TY - JOUR A1 - Schubert, Maria A1 - Spahn, Martin A1 - Kneitz, Susanne A1 - Scholz, Claus Jürgen A1 - Joniau, Steven A1 - Stroebel, Philipp A1 - Riedmiller, Hubertus A1 - Kneitz, Burkhard T1 - Distinct microRNA Expression Profile in Prostate Cancer Patients with Early Clinical Failure and the Impact of let-7 as Prognostic Marker in High-Risk Prostate Cancer JF - PLoS ONE N2 - Background The identification of additional prognostic markers to improve risk stratification and to avoid overtreatment is one of the most urgent clinical needs in prostate cancer (PCa). MicroRNAs, being important regulators of gene expression, are promising biomarkers in various cancer entities, though the impact as prognostic predictors in PCa is poorly understood. The aim of this study was to identify specific miRNAs as potential prognostic markers in high-risk PCa and to validate their clinical impact. Methodology and Principal Findings We performed miRNA-microarray analysis in a high-risk PCa study group selected by their clinical outcome (clinical progression free survival (CPFS) vs. clinical failure (CF)). We identified seven candidate miRNAs (let-7a/b/c, miR-515-3p/5p, -181b, -146b, and -361) that showed differential expression between both groups. Further qRT-PCR analysis revealed down-regulation of members of the let-7 family in the majority of a large, well-characterized high-risk PCa cohort (n = 98). Expression of let-7a/b/and -c was correlated to clinical outcome parameters of this group. While let-7a showed no association or correlation with clinical relevant data, let-7b and let-7c were associated with CF in PCa patients and functioned partially as independent prognostic marker. Validation of the data using an independent high-risk study cohort revealed that let-7b, but not let-7c, has impact as an independent prognostic marker for BCR and CF. Furthermore, we identified HMGA1, a non-histone protein, as a new target of let-7b and found correlation of let-7b down-regulation with HMGA1 over-expression in primary PCa samples. Conclusion Our findings define a distinct miRNA expression profile in PCa cases with early CF and identified let-7b as prognostic biomarker in high-risk PCa. This study highlights the importance of let-7b as tumor suppressor miRNA in high-risk PCa and presents a basis to improve individual therapy for high-risk PCa patients. KW - biomarkers KW - gene expression KW - gene targeting KW - luciferase KW - MircoRNA KW - microarrays KW - oncogenes KW - prostate cancer Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96825 ER - TY - JOUR A1 - Holubyev, Konstyantyn A1 - Bratengeier, Klaus A1 - Gainey, Mark A1 - Polat, Bülent A1 - Flentje, Michael T1 - Towards automated on-line adaptation of 2-Step IMRT plans: QUASIMODO phantom and prostate cancer cases JF - Radiation Oncology N2 - Background The standard clinical protocol of image-guided IMRT for prostate carcinoma introduces isocenter relocation to restore the conformity of the multi-leaf collimator (MLC) segments to the target as seen in the cone-beam CT on the day of treatment. The large interfractional deformations of the clinical target volume (CTV) still require introduction of safety margins which leads to undesirably high rectum toxicity. Here we present further results from the 2-Step IMRT method which generates adaptable prostate IMRT plans using Beam Eye View (BEV) and 3D information. Methods Intermediate/high-risk prostate carcinoma cases are treated using Simultaneous Integrated Boost at the Universitätsklinkum Würzburg (UKW). Based on the planning CT a CTV is defined as the prostate and the base of seminal vesicles. The CTV is expanded by 10 mm resulting in the PTV; the posterior margin is limited to 7 mm. The Boost is obtained by expanding the CTV by 5 mm, overlap with rectum is not allowed. Prescription doses to PTV and Boost are 60.1 and 74 Gy respectively given in 33 fractions. We analyse the geometry of the structures of interest (SOIs): PTV, Boost, and rectum, and generate 2-Step IMRT plans to deliver three fluence steps: conformal to the target SOIs (S0), sparing the rectum (S1), and narrow segments compensating the underdosage in the target SOIs due to the rectum sparing (S2). The width of S2 segments is calculated for every MLC leaf pair based on the target and rectum geometry in the corresponding CT layer to have best target coverage. The resulting segments are then fed into the DMPO optimizer of the Pinnacle treatment planning system for weight optimization and fine-tuning of the form, prior to final dose calculation using the collapsed cone algorithm. We adapt 2-Step IMRT plans to changed geometry whilst simultaneously preserving the number of initially planned Monitor Units (MU). The adaptation adds three further steps to the previous isocenter relocation: 1) 2-Step generation for the geometry of the day using the relocated isocenter, MU transfer from the planning geometry; 2) Adaptation of the widths of S2 segments to the geometry of the day; 3) Imitation of DMPO fine-tuning for the geometry of the day. Results and conclusion We have performed automated 2-Step IMRT adaptation for ten prostate adaptation cases. The adapted plans show statistically significant improvement of the target coverage and of the rectum sparing compared to those plans in which only the isocenter is relocated. The 2-Step IMRT method may become a core of the automated adaptive radiation therapy system at our department. KW - Prostate carcinoma KW - IMRT KW - IGRT KW - Adaptation Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96818 UR - http://www.ro-journal.com/content/8/1/263 ER - TY - JOUR A1 - Stoevesandt, Johanna A1 - Hofmann, Bernd A1 - Hain, Johannes A1 - Kerstan, Andreas A1 - Trautmann, Axel T1 - Single venom-based immunotherapy effectively protects patients with double positive tests to honey bee and Vespula venom JF - Allergy, Asthma & Clinical Immunology N2 - Background Referring to individuals with reactivity to honey bee and Vespula venom in diagnostic tests, the umbrella terms “double sensitization” or “double positivity” cover patients with true clinical double allergy and those allergic to a single venom with asymptomatic sensitization to the other. There is no international consensus on whether immunotherapy regimens should generally include both venoms in double sensitized patients. Objective We investigated the long-term outcome of single venom-based immunotherapy with regard to potential risk factors for treatment failure and specifically compared the risk of relapse in mono sensitized and double sensitized patients. Methods Re-sting data were obtained from 635 patients who had completed at least 3 years of immunotherapy between 1988 and 2008. The adequate venom for immunotherapy was selected using an algorithm based on clinical details and the results of diagnostic tests. Results Of 635 patients, 351 (55.3%) were double sensitized to both venoms. The overall re-exposure rate to Hymenoptera stings during and after immunotherapy was 62.4%; the relapse rate was 7.1% (6.0% in mono sensitized, 7.8% in double sensitized patients). Recurring anaphylaxis was statistically less severe than the index sting reaction (P = 0.004). Double sensitization was not significantly related to relapsing anaphylaxis (P = 0.56), but there was a tendency towards an increased risk of relapse in a subgroup of patients with equal reactivity to both venoms in diagnostic tests (P = 0.15). Conclusions Single venom-based immunotherapy over 3 to 5 years effectively and long-lastingly protects the vast majority of both mono sensitized and double sensitized Hymenoptera venom allergic patients. Double venom immunotherapy is indicated in clinically double allergic patients reporting systemic reactions to stings of both Hymenoptera and in those with equal reactivity to both venoms in diagnostic tests who have not reliably identified the culprit stinging insect. KW - Anaphylaxis KW - Double sensitization KW - Field sting KW - Honey bee KW - Hymenoptera venom KW - Immunotherapy KW - Relapse KW - Risk factor KW - Treatment failure KW - Vespula Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96808 UR - http://www.aacijournal.com/content/9/1/33 ER - TY - JOUR A1 - Bäuerlein, Carina A. A1 - Riedel, Simone S. A1 - Baker, Jeanette A1 - Brede, Christian A1 - Jordán Garrote, Ana-Laura A1 - Chopra, Martin A1 - Ritz, Miriam A1 - Beilhack, Georg F. A1 - Schulz, Stephan A1 - Zeiser, Robert A1 - Schlegel, Paul G. A1 - Einsele, Hermann A1 - Negrin, Robert S. A1 - Beilhack, Andreas T1 - A diagnostic window for the treatment of acute graft-versus-host disease prior to visible clinical symptoms in a murine model JF - BMC Medicine N2 - Background Acute graft-versus-host disease (aGVHD) poses a major limitation for broader therapeutic application of allogeneic hematopoietic cell transplantation (allo-HCT). Early diagnosis of aGVHD remains difficult and is based on clinical symptoms and histopathological evaluation of tissue biopsies. Thus, current aGVHD diagnosis is limited to patients with established disease manifestation. Therefore, for improved disease prevention it is important to develop predictive assays to identify patients at risk of developing aGVHD. Here we address whether insights into the timing of the aGVHD initiation and effector phases could allow for the detection of migrating alloreactive T cells before clinical aGVHD onset to permit for efficient therapeutic intervention. Methods Murine major histocompatibility complex (MHC) mismatched and minor histocompatibility antigen (miHAg) mismatched allo-HCT models were employed to assess the spatiotemporal distribution of donor T cells with flow cytometry and in vivo bioluminescence imaging (BLI). Daily flow cytometry analysis of peripheral blood mononuclear cells allowed us to identify migrating alloreactive T cells based on homing receptor expression profiles. Results We identified a time period of 2 weeks of massive alloreactive donor T cell migration in the blood after miHAg mismatch allo-HCT before clinical aGVHD symptoms appeared. Alloreactive T cells upregulated α4β7 integrin and P-selectin ligand during this migration phase. Consequently, targeted preemptive treatment with rapamycin, starting at the earliest detection time of alloreactive donor T cells in the peripheral blood, prevented lethal aGVHD. Conclusions Based on this data we propose a critical time frame prior to the onset of aGVHD symptoms to identify alloreactive T cells in the peripheral blood for timely and effective therapeutic intervention. KW - Allogeneic stem cell transplantation KW - Graft-versus-host disease KW - Minor histocompatibility antigen mismatch transplantation Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96797 UR - http://www.biomedcentral.com/1741-7015/11/134 ER - TY - JOUR A1 - Rudel, Thomas A1 - Prusty, Bhupesh K. A1 - Siegl, Christine A1 - Hauck, Petra A1 - Hain, Johannes A1 - Korhonen, Suvi J. A1 - Hiltunen-Back, Eija A1 - Poulakkainen, Mirja T1 - Chlamydia trachomatis Infection Induces Replication of Latent HHV-6 JF - PLoS ONE N2 - Human herpesvirus-6 (HHV-6) exists in latent form either as a nuclear episome or integrated into human chromosomes in more than 90% of healthy individuals without causing clinical symptoms. Immunosuppression and stress conditions can reactivate HHV-6 replication, associated with clinical complications and even death. We have previously shown that co-infection of Chlamydia trachomatis and HHV-6 promotes chlamydial persistence and increases viral uptake in an in vitro cell culture model. Here we investigated C. trachomatis-induced HHV-6 activation in cell lines and fresh blood samples from patients having Chromosomally integrated HHV-6 (CiHHV-6). We observed activation of latent HHV-6 DNA replication in CiHHV-6 cell lines and fresh blood cells without formation of viral particles. Interestingly, we detected HHV-6 DNA in blood as well as cervical swabs from C. trachomatis-infected women. Low virus titers correlated with high C. trachomatis load and vice versa, demonstrating a potentially significant interaction of these pathogens in blood cells and in the cervix of infected patients. Our data suggest a thus far underestimated interference of HHV-6 and C. trachomatis with a likely impact on the disease outcome as consequence of co-infection. KW - blood KW - chlamydia KW - chlamydia infection KW - chlamydia trachomatis KW - DNA replication KW - macrophages KW - polymerase chain reaction KW - viral load Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96731 ER - TY - JOUR A1 - Westermaier, Thomas A1 - Stetter, Christian A1 - Kunze, Ekkehard A1 - Willner, Nadine A1 - Raslan, Furat A1 - Vince, Giles H. A1 - Ernestus, Ralf-Ingo T1 - Magnesium treatment for neuroprotection in ischemic diseases of the brain JF - Experimental and Translational Stroke Medicine N2 - This article reviews experimental and clinical data on the use of magnesium as a neuroprotective agent in various conditions of cerebral ischemia. Whereas magnesium has shown neuroprotective properties in animal models of global and focal cerebral ischemia, this effect could not be reproduced in a large human stroke trial. These conflicting results may be explained by the timing of treatment. While treatment can be started before or early after ischemia in experimental studies, there is an inevitable delay of treatment in human stroke. Magnesium administration to women at risk for preterm birth has been investigated in several randomized controlled trials and was found to reduce the risk of neurological deficits for the premature infant. Postnatal administration of magnesium to babies after perinatal asphyxia has been studied in a number of controlled clinical trials. The results are promising but the trials have, so far, been underpowered. In aneurysmal subarachnoid hemorrhage (SAH), cerebral ischemia arises with the onset of delayed cerebral vasospasm several days after aneurysm rupture. Similar to perinatal asphyxia in impending preterm delivery, treatment can be started prior to ischemia. The results of clinical trials are conflicting. Several clinical trials did not show an additive effect of magnesium with nimodipine, another calcium antagonist which is routinely administered to SAH patients in many centers. Other trials found a protective effect after magnesium therapy. Thus, it may still be a promising substance in the treatment of secondary cerebral ischemia after aneurysmal SAH. Future prospects of magnesium therapy are discussed. KW - Medizin Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96729 UR - http://www.etsmjournal.com/content/5/1/6 ER - TY - JOUR A1 - Ute, Hentschel A1 - Reisberg, Eva E. A1 - Hildebrandt, Ulrich A1 - Riederer, Markus T1 - Distinct Phyllosphere Bacterial Communities on Arabidopsis Wax Mutant Leaves JF - PLoS ONE N2 - The phyllosphere of plants is inhabited by diverse microorganisms, however, the factors shaping their community composition are not fully elucidated. The plant cuticle represents the initial contact surface between microorganisms and the plant. We thus aimed to investigate whether mutations in the cuticular wax biosynthesis would affect the diversity of the phyllosphere microbiota. A set of four Arabidopsis thaliana eceriferum mutants (cer1, cer6, cer9, cer16) and their respective wild type (Landsberg erecta) were subjected to an outdoor growth period and analysed towards this purpose. The chemical distinctness of the mutant wax phenotypes was confirmed by gas chromatographic measurements. Next generation amplicon pyrosequencing of the bacterial communities showed distinct community patterns. This observation was supported by denaturing gradient gel electrophoresis experiments. Microbial community analyses revealed bacterial phylotypes that were ubiquitously present on all plant lines (termed “core” community) while others were positively or negatively affected by the wax mutant phenotype (termed “plant line-specific“ community). We conclude from this study that plant cuticular wax composition can affect the community composition of phyllosphere bacteria. KW - arabidopsis thaliana KW - bacteria KW - community structure KW - denaturing gradient gel electrophoresis KW - fatty acids KW - leaves KW - plant communities KW - waxes Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96699 ER - TY - JOUR A1 - Kopf, Juliane A1 - Dresler, Thomas A1 - Reicherts, Philipp A1 - Herrmann, Martin J. A1 - Reif, Andreas T1 - The Effect of Emotional Content on Brain Activation and the Late Positive Potential in a Word n-back Task JF - PLoS ONE N2 - Introduction There is mounting evidence for the influence of emotional content on working memory performance. This is particularly important in light of the emotion processing that needs to take place when emotional content interferes with executive functions. In this study, we used emotional words of different valence but with similar arousal levels in an n-back task. Methods We examined the effects on activation in the prefrontal cortex by means of functional near-infrared spectroscopy (fNIRS) and on the late positive potential (LPP). FNIRS and LPP data were examined in 30 healthy subjects. Results Behavioral results show an influence of valence on the error rate depending on the difficulty of the task: more errors were made when the valence was negative and the task difficult. Brain activation was dependent both on the difficulty of the task and on the valence: negative valence of a word diminished the increase in activation, whereas positive valence did not influence the increase in activation, while difficulty levels increased. The LPP also differentiated between the different valences, and in addition was influenced by the task difficulty, the more difficult the task, the less differentiation could be observed. Conclusions Summarized, this study shows the influence of valence on a verbal working memory task. When a word contained a negative valence, the emotional content seemed to take precedence in contrast to words containing a positive valence. Working memory and emotion processing sites seemed to overlap and compete for resources even when words are carriers of the emotional content. KW - analysis of variance KW - electrode recording KW - electroencephalography KW - emotions KW - eyes KW - near-infrared spectroscopy KW - reaction time KW - working memory Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96687 ER - TY - JOUR A1 - Rudel, Thomas A1 - Faulstich, Michaela A1 - Böttcher, Jan-Peter A1 - Meyer, Thomas F. A1 - Fraunholz, Martin T1 - Pilus Phase Variation Switches Gonococcal Adherence to Invasion by Caveolin-1-Dependent Host Cell Signaling JF - PLoS Pathogens N2 - Many pathogenic bacteria cause local infections but occasionally invade into the blood stream, often with fatal outcome. Very little is known about the mechanism underlying the switch from local to invasive infection. In the case of Neisseria gonorrhoeae, phase variable type 4 pili (T4P) stabilize local infection by mediating microcolony formation and inducing anti-invasive signals. Outer membrane porin PorBIA, in contrast, is associated with disseminated infection and facilitates the efficient invasion of gonococci into host cells. Here we demonstrate that loss of pili by natural pilus phase variation is a prerequisite for the transition from local to invasive infection. Unexpectedly, both T4P-mediated inhibition of invasion and PorBIA-triggered invasion utilize membrane rafts and signaling pathways that depend on caveolin-1-Y14 phosphorylation (Cav1-pY14). We identified p85 regulatory subunit of PI3 kinase (PI3K) and phospholipase Cγ1 as new, exclusive and essential interaction partners for Cav1-pY14 in the course of PorBIA-induced invasion. Active PI3K induces the uptake of gonococci via a new invasion pathway involving protein kinase D1. Our data describe a novel route of bacterial entry into epithelial cells and offer the first mechanistic insight into the switch from local to invasive gonococcal infection. KW - antibodies KW - bacterial pathogens KW - cell membranes KW - intracellular pathogens KW - neisseria gonorrhoeae KW - phosphates KW - phosphorylation KW - pili and fimbriae Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96679 ER - TY - JOUR A1 - Rittner, Heike Lydia A1 - Hackel, Dagmar A1 - Pflücke, Diana A1 - Neumann, Annick A1 - Viebahn, Johannes A1 - Mousa, Shaaban A1 - Wischmeyer, Erhard A1 - Roewer, Norbert A1 - Brack, Alexander T1 - The Connection of Monocytes and Reactive Oxygen Species in Pain JF - PLoS ONE N2 - The interplay of specific leukocyte subpopulations, resident cells and proalgesic mediators results in pain in inflammation. Proalgesic mediators like reactive oxygen species (ROS) and downstream products elicit pain by stimulation of transient receptor potential (TRP) channels. The contribution of leukocyte subpopulations however is less clear. Local injection of neutrophilic chemokines elicits neutrophil recruitment but no hyperalgesia in rats. In meta-analyses the monocytic chemoattractant, CCL2 (monocyte chemoattractant protein-1; MCP-1), was identified as an important factor in the pathophysiology of human and animal pain. In this study, intraplantar injection of CCL2 elicited thermal and mechanical pain in Wistar but not in Dark Agouti (DA) rats, which lack p47phox, a part of the NADPH oxidase complex. Inflammatory hyperalgesia after complete Freund's adjuvant (CFA) as well as capsaicin-induced hyperalgesia and capsaicin-induced current flow in dorsal root ganglion neurons in DA were comparable to Wistar rats. Macrophages from DA expressed lower levels of CCR2 and thereby migrated less towards CCL2 and formed limited amounts of ROS in vitro and 4-hydroxynonenal (4-HNE) in the tissue in response to CCL2 compared to Wistar rats. Local adoptive transfer of peritoneal macrophages from Wistar but not from DA rats reconstituted CCL2-triggered hyperalgesia in leukocyte-depleted DA and Wistar rats. A pharmacological stimulator of ROS production (phytol) restored CCL2-induced hyperalgesia in vivo in DA rats. In Wistar rats, CCL2-induced hyperalgesia was completely blocked by superoxide dismutase (SOD), catalase or tempol. Likewise, inhibition of NADPH oxidase by apocynin reduced CCL2-elicited hyperalgesia but not CFA-induced inflammatory hyperalgesia. In summary, we provide a link between CCL2, CCR2 expression on macrophages, NADPH oxidase, ROS and the development CCL2-triggered hyperalgesia, which is different from CFA-induced hyperalgesia. The study further supports the impact of CCL2 and ROS as potential targets in pain therapy. KW - analysis of variance KW - chemokines KW - hyperalgesia KW - inflammation KW - macrophages KW - monocytes KW - white blood cells KW - wistar rats Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96669 ER - TY - JOUR A1 - Högger, Petra A1 - Kurlbaum, Max A1 - Mülek, Melanie T1 - Facilitated Uptake of a Bioactive Metabolite of Maritime Pine Bark Extract (Pycnogenol) into Human Erythrocytes JF - PLoS ONE N2 - Many plant secondary metabolites exhibit some degree of biological activity in humans. It is a common observation that individual plant-derived compounds in vivo are present in the nanomolar concentration range at which they usually fail to display measurable activity in vitro. While it is debatable that compounds detected in plasma are not the key effectors of bioactivity, an alternative hypothesis may take into consideration that measurable concentrations also reside in compartments other than plasma. We analysed the binding of constituents and the metabolite δ-(3,4-dihydroxy-phenyl)-γ-valerolactone (M1), that had been previously detected in plasma samples of human consumers of pine bark extract Pycnogenol, to human erythrocytes. We found that caffeic acid, taxifolin, and ferulic acid passively bind to red blood cells, but only the bioactive metabolite M1 revealed pronounced accumulation. The partitioning of M1 into erythrocytes was significantly diminished at higher concentrations of M1 and in the presence of glucose, suggesting a facilitated transport of M1 via GLUT-1 transporter. This concept was further supported by structural similarities between the natural substrate α-D-glucose and the S-isomer of M1. After cellular uptake, M1 underwent further metabolism by conjugation with glutathione. We present strong indication for a transporter-mediated accumulation of a flavonoid metabolite in human erythrocytes and subsequent formation of a novel glutathione adduct. The physiologic role of the adduct remains to be elucidated. KW - blood plasma KW - cell metabolism KW - drug metabolism KW - glucose KW - glucos metabolism KW - glutathione KW - plasma proteins KW - red blood cells Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96656 ER - TY - JOUR A1 - Frey, Sönke Percy A1 - Jansen, Hendrik A1 - Doht, Stefanie A1 - Filgueira, Luis A1 - Zellweger, Rene T1 - Immunohistochemical and Molecular Characterization of the Human Periosteum JF - The Scientific World Journal N2 - Purpose. The aim of the present study was to characterize the cell of the human periosteum using immunohistological and molecular methods. Methods. Phenotypic properties and the distribution of the cells within the different layers were investigated with immunohistochemical staining techniques and RT-PCR, focussing on markers for stromal stem cells, osteoblasts, osteoclasts and immune cells. Results. Immunohistochemical results revealed that all stained cells were located in the cambium layer and that most cells were positive for vimentin. The majority of cells consisted of stromal stem cells and osteoblastic precursor cells. The density increased towards the deeper layers of the cambium. In addition, cells positive for markers of the osteoblast, chondrocyte, and osteoclast lineages were found. Interestingly, there were MHC class II-expressing immune cells suggesting the presence of dendritic cells. Using lineage-specific primer pairs RT-PCR confirmed the immunofluorescence microscopy results, supporting that human periosteum serves as a reservoir of stromal stem cells, as well as cells of the osteoblastic, and the chondroblastic lineage, osteoclasts, and dendritic cells. Conclusion. Our work elucidates the role of periosteum as a source of cells with a high regenerative capacity. Undifferentiated stromal stem cells as well as osteoblastic precursor cells are dominating in the cambium layer. A new outlook is given towards an immune response coming from the periosteum as MHC II positive immune cells were detected. KW - Medizin Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96623 ER - TY - JOUR A1 - Sharma, Cynthia M. A1 - Dugar, Gaurav A1 - Herbig, Alexander A1 - Förstner, Konrad U. A1 - Heidrich, Nadja A1 - Reinhardt, Richard A1 - Nieselt, Kay T1 - High-Resolution Transcriptome Maps Reveal Strain-Specific Regulatory Features of Multiple Campylobacter jejuni Isolates JF - PLoS Genetics N2 - Campylobacter jejuni is currently the leading cause of bacterial gastroenteritis in humans. Comparison of multiple Campylobacter strains revealed a high genetic and phenotypic diversity. However, little is known about differences in transcriptome organization, gene expression, and small RNA (sRNA) repertoires. Here we present the first comparative primary transcriptome analysis based on the differential RNA–seq (dRNA–seq) of four C. jejuni isolates. Our approach includes a novel, generic method for the automated annotation of transcriptional start sites (TSS), which allowed us to provide genome-wide promoter maps in the analyzed strains. These global TSS maps are refined through the integration of a SuperGenome approach that allows for a comparative TSS annotation by mapping RNA–seq data of multiple strains into a common coordinate system derived from a whole-genome alignment. Considering the steadily increasing amount of RNA–seq studies, our automated TSS annotation will not only facilitate transcriptome annotation for a wider range of pro- and eukaryotes but can also be adapted for the analysis among different growth or stress conditions. Our comparative dRNA–seq analysis revealed conservation of most TSS, but also single-nucleotide-polymorphisms (SNP) in promoter regions, which lead to strain-specific transcriptional output. Furthermore, we identified strain-specific sRNA repertoires that could contribute to differential gene regulation among strains. In addition, we identified a novel minimal CRISPR-system in Campylobacter of the type-II CRISPR subtype, which relies on the host factor RNase III and a trans-encoded sRNA for maturation of crRNAs. This minimal system of Campylobacter, which seems active in only some strains, employs a unique maturation pathway, since the crRNAs are transcribed from individual promoters in the upstream repeats and thereby minimize the requirements for the maturation machinery. Overall, our study provides new insights into strain-specific transcriptome organization and sRNAs, and reveals genes that could modulate phenotypic variation among strains despite high conservation at the DNA level. KW - bacterial genomics KW - CRISPRs KW - genome annotation KW - campylobacter KW - genomic libraries KW - genomic library construction KW - sequence motif analysis KW - transcriptome analysis Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96610 ER - TY - JOUR A1 - Winter, Patrick A1 - Kampf, Thomas A1 - Helluy, Xavier A1 - Gutjahr, Fabian T. A1 - Meyer, Cord B. A1 - Rommel, Eberhard A1 - Bauer, Wolfgang R. A1 - Jakob, Peter M. A1 - Herold, Volker T1 - Fast retrospectively triggered local pulse-wave velocity measurements in mice with CMR-microscopy using a radial trajectory JF - Journal of Cardiovascular Magnetic Resonance N2 - Background The aortic pulse-wave velocity (PWV) is an important indicator of cardiovascular risk. In recent studies MRI methods have been developed to measure this parameter noninvasively in mice. Present techniques require additional hardware for cardiac and respiratory gating. In this work a robust self-gated measurement of the local PWV in mice without the need of triggering probes is proposed. Methods The local PWV of 6-months-old wild-type C57BL/6J mice (n=6) was measured in the abdominal aorta with a retrospectively triggered radial Phase Contrast (PC) MR sequence using the flow-area (QA) method. A navigator signal was extracted from the CMR data of highly asymmetric radial projections with short repetition time (TR=3 ms) and post-processed with high-pass and low-pass filters for retrospective cardiac and respiratory gating. The self-gating signal was used for a reconstruction of high-resolution Cine frames of the aortic motion. To assess the local PWV the volume flow Q and the cross-sectional area A of the aorta were determined. The results were compared with the values measured with a triggered Cartesian and an undersampled triggered radial PC-Cine sequence. Results In all examined animals a self-gating signal could be extracted and used for retrospective breath-gating and PC-Cine reconstruction. With the non-triggered measurement PWV values of 2.3±0.2 m/s were determined. These values are in agreement with those measured with the triggered Cartesian (2.4±0.2 m/s) and the triggered radial (2.3±0.2 m/s) measurement. Due to the strong robustness of the radial trajectory against undersampling an acceleration of more than two relative to the prospectively triggered Cartesian sampling could be achieved with the retrospective method. Conclusion With the radial flow-encoding sequence the extraction of a self-gating signal is feasible. The retrospective method enables a robust and fast measurement of the local PWV without the need of additional trigger hardware. KW - pulse-wave velocity KW - mouse KW - self-gating KW - phase-contrast CMR KW - non-triggered KW - retrospective KW - radial KW - aorta Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96602 UR - http://jcmr-online.com/content/15/1/88 ER - TY - JOUR A1 - Gassenmaier, Tobias A1 - Gorski, Armin A1 - Aleksic, Ivan A1 - Deubner, Nikolas A1 - Weidemann, Frank A1 - Beer, Meinrad T1 - Impact of cardiac magnet resonance imaging on management of ventricular septal rupture after acute myocardial infarction JF - World Journal of Cardiology N2 - A 74-year-old man was admitted to the cardiac catheterization laboratory with acute myocardial infarction. After successful angioplasty and stent implantation into the right coronary artery, he developed cardiogenic shock the following day. Echocardiography showed ventricular septal rupture. Cardiac magnet resonance imaging (MRI) was performed on the critically ill patient and provided detailed information on size and localization of the ruptured septum by the use of fast MRI sequences. Moreover, the MRI revealed that the ventricular septal rupture was within the myocardial infarction area, which was substantially larger than the rupture. As the patient’s condition worsened, he was intubated and had intra-aortic balloon pump implanted, and extracorporeal membrane oxygenation was initiated. During the following days, the patient’s situation improved, and surgical correction of the ventricular septal defect could successfully be performed. To the best of our knowledge, this case report is the first description of postinfarction ventricular septal rupture by the use of cardiac MRI in an intensive care patient with cardiogenic shock and subsequent successful surgical repair. KW - Cardiac magnetic resonance imaging KW - Ventricular septal rupture KW - Myocardial infarction KW - surgical repair KW - Extracorporeal membrane oxygenation Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96562 ER - TY - JOUR A1 - Halder, Sebastian A1 - Varkuti, Balint A1 - Bogdan, Martin A1 - Kübler, Andrea A1 - Rosenstiel, Wolfgang A1 - Sitaram, Ranganatha A1 - Birbaumer, Niels T1 - Prediction of brain-computer interface aptitude from individual brain structure JF - Frontiers in Human Neuroscience N2 - Objective: Brain-computer interface (BCI) provide a non-muscular communication channel for patients with impairments of the motor system. A significant number of BCI users is unable to obtain voluntary control of a BCI-system in proper time. This makes methods that can be used to determine the aptitude of a user necessary. Methods: We hypothesized that integrity and connectivity of involved white matter connections may serve as a predictor of individual BCI-performance. Therefore, we analyzed structural data from anatomical scans and DTI of motor imagery BCI-users differentiated into high and low BCI-aptitude groups based on their overall performance. Results: Using a machine learning classification method we identified discriminating structural brain trait features and correlated the best features with a continuous measure of individual BCI-performance. Prediction of the aptitude group of each participant was possible with near perfect accuracy (one error). Conclusions: Tissue volumetric analysis yielded only poor classification results. In contrast, the structural integrity and myelination quality of deep white matter structures such as the Corpus Callosum, Cingulum, and Superior Fronto-Occipital Fascicle were positively correlated with individual BCI-performance. Significance: This confirms that structural brain traits contribute to individual performance in BCI use. KW - BCI KW - motor imagery KW - aptitude KW - DTI KW - fractional anisotropy Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96558 ER - TY - JOUR A1 - Freiberg, Florentina Joyce A1 - Matlach, Juliane A1 - Grehn, Franz A1 - Karl, Sabine A1 - Klink, Thomas T1 - Postoperative subconjunctival bevacizumab injection as an adjunct to 5-fluorouracil in the management of scarring after trabeculectomy JF - Clinical Ophthalmology N2 - Purpose: Scarring after glaucoma filtering surgery remains the most frequent cause for bleb failure. The aim of this study was to assess if the postoperative injection of bevacizumab reduces the number of postoperative subconjunctival 5-fluorouracil (5-FU) injections. Further, the effect of bevacizumab as an adjunct to 5-FU on the intraocular pressure (IOP) outcome, bleb morphology, postoperative medications, and complications was evaluated. Methods: Glaucoma patients (N = 61) who underwent trabeculectomy with mitomycin C were analyzed retrospectively (follow-up period of 25 ± 19 months). Surgery was performed exclusively by one experienced glaucoma specialist using a standardized technique. Patients in group 1 received subconjunctival applications of 5-FU postoperatively. Patients in group 2 received 5-FU and subconjunctival injection of bevacizumab. Results: Group 1 had 6.4 ± 3.3 (0–15) (mean ± standard deviation and range, respectively) 5-FU injections. Group 2 had 4.0 ± 2.8 (0–12) (mean ± standard deviation and range, respectively) 5-FU injections. The added injection of bevacizumab significantly reduced the mean number of 5-FU injections by 2.4 ± 3.08 (P ≤ 0.005). There was no significantly lower IOP in group 2 when compared to group 1. A significant reduction in vascularization and in cork screw vessels could be found in both groups (P < 0.0001, 7 days to last 5-FU), yet there was no difference between the two groups at the last follow-up. Postoperative complications were significantly higher for both groups when more 5-FU injections were applied. (P = 0.008). No significant difference in best corrected visual acuity (P = 0.852) and visual field testing (P = 0.610) between preoperative to last follow-up could be found between the two groups. Conclusion: The postoperative injection of bevacizumab reduced the number of subconjunctival 5-FU injections significantly by 2.4 injections. A significant difference in postoperative IOP reduction, bleb morphology, and postoperative medication was not detected. KW - bevacizumab KW - 5-fluorouracil KW - glaucoma KW - trabeculectomy KW - bleb failure KW - bleb scarring Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96546 ER - TY - JOUR A1 - Schneider-Schaulies, Jürgen A1 - Bieringer, Maria A1 - Han, Jung Woo A1 - Kendl, Sabine A1 - Khosravi, Mojtaba A1 - Plattet, Philippe T1 - Experimental Adaptation of Wild-Type Canine Distemper Virus (CDV) to the Human Entry Receptor CD150 JF - PLoS ONE N2 - Canine distemper virus (CDV), a close relative of measles virus (MV), is widespread and well known for its broad host range. When the goal of measles eradication may be achieved, and when measles vaccination will be stopped, CDV might eventually cross the species barrier to humans and emerge as a new human pathogen. In order to get an impression how fast such alterations may occur, we characterized required adaptive mutations to the human entry receptors CD150 (SLAM) and nectin-4 as first step to infect human target cells. Recombinant wild-type CDV-A75/17red adapted quickly to growth in human H358 epithelial cells expressing human nectin-4. Sequencing of the viral attachment proteins (hemagglutinin, H, and fusion protein, F) genes revealed that no adaptive alteration was required to utilize human nectin-4. In contrast, the virus replicated only to low titres (102 pfu/ml) in Vero cells expressing human CD150 (Vero-hSLAM). After three passages using these cells virus was adapted to human CD150 and replicated to high titres (105 pfu/ml). Sequence analyses revealed that only one amino acid exchange in the H-protein at position 540 Asp→Gly (D540G) was required for functional adaptation to human CD150. Structural modelling suggests that the adaptive mutation D540G in H reflects the sequence alteration from canine to human CD150 at position 70 and 71 from Pro to Leu (P70L) and Gly to Glu (G71E), and compensates for the gain of a negative charge in the human CD150 molecule. Using this model system our data indicate that only a minimal alteration, in this case one adaptive mutation, is required for adaptation of CDV to the human entry receptors, and help to understand the molecular basis why this adaptive mutation occurs. KW - antibodies KW - canine distemper virus KW - measles virus KW - microbial mutation KW - protein sequencing KW - recombinant proteins KW - ultraviolet radiation KW - vero cells Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96537 ER - TY - JOUR A1 - Üçeyler, Nurcan A1 - Kahn, Ann-Kathrin A1 - Kramer, Daniela A1 - Zeller, Daniel A1 - Casanova-Molla, Jordi A1 - Wanner, Christoph A1 - Weidemann, Frank A1 - Katsarava, Zaza A1 - Sommer, Claudia T1 - Impaired small fiber conduction in patients with Fabry disease: a neurophysiological case–control study JF - BMC Neurology N2 - Background Fabry disease is an inborn lysosomal storage disorder which is associated with small fiber neuropathy. We set out to investigate small fiber conduction in Fabry patients using pain-related evoked potentials (PREP). Methods In this case–control study we prospectively studied 76 consecutive Fabry patients for electrical small fiber conduction in correlation with small fiber function and morphology. Data were compared with healthy controls using non-parametric statistical tests. All patients underwent neurological examination and were investigated with pain and depression questionnaires. Small fiber function (quantitative sensory testing, QST), morphology (skin punch biopsy), and electrical conduction (PREP) were assessed and correlated. Patients were stratified for gender and disease severity as reflected by renal function. Results All Fabry patients (31 men, 45 women) had small fiber neuropathy. Men with Fabry disease showed impaired cold (p < 0.01) and warm perception (p < 0.05), while women did not differ from controls. Intraepidermal nerve fiber density (IENFD) was reduced at the lower leg (p < 0.001) and the back (p < 0.05) mainly of men with impaired renal function. When investigating A-delta fiber conduction with PREP, men but not women with Fabry disease had lower amplitudes upon stimulation at face (p < 0.01), hands (p < 0.05), and feet (p < 0.01) compared to controls. PREP amplitudes further decreased with advance in disease severity. PREP amplitudes and warm (p < 0.05) and cold detection thresholds (p < 0.01) at the feet correlated positively in male patients. Conclusion Small fiber conduction is impaired in men with Fabry disease and worsens with advanced disease severity. PREP are well-suited to measure A-delta fiber conduction. KW - Fabry disease KW - Pain-related evoked potentials KW - Small fiber neuropathy KW - A-delta fibers Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96527 UR - http://www.biomedcentral.com/1471-2377/13/47 ER - TY - JOUR A1 - Pauli, Paul A1 - Glotzbach-Schoon, Evelyn A1 - Andreatta, Marta A1 - Reif, Andreas A1 - Ewald, Heike A1 - Tröger, Christian A1 - Baumann, Christian A1 - Deckert, Jürgen A1 - Mühlberger, Andreas T1 - Contextual fear conditioning in virtual reality is affected by 5HTTLPR and NPSR1 polymorphisms: effects on fear-potentiated startle JF - Frontiers in Behavioral Neuroscience N2 - The serotonin (5-HT) and neuropeptide S (NPS) systems are discussed as important genetic modulators of fear and sustained anxiety contributing to the etiology of anxiety disorders. Sustained anxiety is a crucial characteristic of most anxiety disorders which likely develops through contextual fear conditioning. This study investigated if and how genetic alterations of the 5-HT and the NPS systems as well as their interaction modulate contextual fear conditioning; specifically, function polymorphic variants in the genes coding for the 5-HT transporter (5HTT) and the NPS receptor (NPSR1) were studied. A large group of healthy volunteers was therefore stratified for 5HTTLPR (S+ vs. LL carriers) and NPSR1 rs324981 (T+ vs. AA carriers) polymorphisms resulting in four genotype groups (S+/T+, S+/AA, LL/T+, LL/AA) of 20 participants each. All participants underwent contextual fear conditioning and extinction using a virtual reality (VR) paradigm. During acquisition, one virtual office room (anxiety context, CXT+) was paired with an unpredictable electric stimulus (unconditioned stimulus, US), whereas another virtual office room was not paired with any US (safety context, CXT−). During extinction no US was administered. Anxiety responses were quantified by fear-potentiated startle and ratings. Most importantly, we found a gene × gene interaction on fear-potentiated startle. Only carriers of both risk alleles (S+/T+) exhibited higher startle responses in CXT+ compared to CXT−. In contrast, anxiety ratings were only influenced by the NPSR1 polymorphism with AA carriers showing higher anxiety ratings in CXT+ as compared to CXT−. Our results speak in favor of a two level account of fear conditioning with diverging effects on implicit vs. explicit fear responses. Enhanced contextual fear conditioning as reflected in potentiated startle responses may be an endophenotype for anxiety disorders. KW - 5HTTLPR KW - NPSR1 KW - gene × gene interaction KW - contextual fear conditioning KW - fear-potentiated startle Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96516 ER - TY - JOUR A1 - Brehm, Klaus A1 - Koziol, Uriel A1 - Krohne, Georg T1 - Anatomy and development of the larval nervous system in Echinococcus multilocularis JF - Frontiers in Zoology N2 - Background The metacestode larva of Echinococcus multilocularis (Cestoda: Taeniidae) develops in the liver of intermediate hosts (typically rodents, or accidentally in humans) as a labyrinth of interconnected cysts that infiltrate the host tissue, causing the disease alveolar echinococcosis. Within the cysts, protoscoleces (the infective stage for the definitive canid host) arise by asexual multiplication. These consist of a scolex similar to that of the adult, invaginated within a small posterior body. Despite the importance of alveolar echinococcosis for human health, relatively little is known about the basic biology, anatomy and development of E. multilocularis larvae, particularly with regard to their nervous system. Results We describe the existence of a subtegumental nerve net in the metacestode cysts, which is immunoreactive for acetylated tubulin-α and contains small populations of nerve cells that are labeled by antibodies raised against several invertebrate neuropeptides. However, no evidence was found for the existence of cholinergic or serotoninergic elements in the cyst wall. Muscle fibers occur without any specific arrangement in the subtegumental layer, and accumulate during the invaginations of the cyst wall that form brood capsules, where protoscoleces develop. The nervous system of the protoscolex develops independently of that of the metacestode cyst, with an antero-posterior developmental gradient. The combination of antibodies against several nervous system markers resulted in a detailed description of the protoscolex nervous system, which is remarkably complex and already similar to that of the adult worm. Conclusions We provide evidence for the first time of the existence of a nervous system in the metacestode cyst wall, which is remarkable given the lack of motility of this larval stage, and the lack of serotoninergic and cholinergic elements. We propose that it could function as a neuroendocrine system, derived from the nervous system present in the bladder tissue of other taeniids. The detailed description of the development and anatomy of the protoscolex neuromuscular system is a necessary first step toward the understanding of the developmental mechanisms operating in these peculiar larval stages. KW - Echinococcus KW - Metacestode KW - Protoscolex KW - Nervous system KW - Neuropeptide KW - Serotonin KW - Acetylated tubulin Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96504 UR - http://www.frontiersinzoology.com/content/10/1/24 ER - TY - JOUR A1 - Waller, Frank A1 - Mueller, Martin J. A1 - Pedrotti, Lorenzo T1 - Piriformospora indica Root Colonization Triggers Local and Systemic Root Responses and Inhibits Secondary Colonization of Distal Roots JF - PLoS ONE N2 - Piriformospora indica is a basidiomycete fungus colonizing roots of a wide range of higher plants, including crop plants and the model plant Arabidopsis thaliana. Previous studies have shown that P. indica improves growth, and enhances systemic pathogen resistance in leaves of host plants. To investigate systemic effects within the root system, we established a hydroponic split-root cultivation system for Arabidopsis. Using quantitative real-time PCR, we show that initial P. indica colonization triggers a local, transient response of several defense-related transcripts, of which some were also induced in shoots and in distal, non-colonized roots of the same plant. Systemic effects on distal roots included the inhibition of secondary P. indica colonization. Faster and stronger induction of defense-related transcripts during secondary inoculation revealed that a P. indica pretreatment triggers root-wide priming of defense responses, which could cause the observed reduction of secondary colonization levels. Secondary P. indica colonization also induced defense responses in distant, already colonized parts of the root. Endophytic fungi therefore trigger a spatially specific response in directly colonized and in systemic root tissues of host plants. KW - Arabidopsis thaliana KW - flowering plants KW - fungal spores KW - fungi KW - gene expression KW - marker genes KW - plant defenses KW - plant signaling Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96493 ER - TY - JOUR A1 - Wolf, Matthias A1 - Chen, Shilin A1 - Song, Jingyuan A1 - Ankenbrand, Markus A1 - Müller, Tobias T1 - Compensatory Base Changes in ITS2 Secondary Structures Correlate with the Biological Species Concept Despite Intragenomic Variability in ITS2 Sequences – A Proof of Concept JF - PLoS ONE N2 - Compensatory base changes (CBCs) in internal transcribed spacer 2 (ITS2) rDNA secondary structures correlate with Ernst Mayr’s biological species concept. This hypothesis also referred to as the CBC species concept recently was subjected to large-scale testing, indicating two distinct probabilities. (1) If there is a CBC then there are two different species with a probability of ~0.93. (2) If there is no CBC then there is the same species with a probability of ~0.76. In ITS2 research, however, the main problem is the multicopy nature of ITS2 sequences. Most recently, 454 pyrosequencing data have been used to characterize more than 5000 intragenomic variations of ITS2 regions from 178 plant species, demonstrating that mutation of ITS2 is frequent, with a mean of 35 variants per species, respectively per individual organism. In this study, using those 454 data, the CBC criterion is reconsidered in the light of intragenomic variability, a proof of concept, a necessary criterion, expecting no intragenomic CBCs in variant ITS2 copies. In accordance with the CBC species concept, we could demonstrate that the probability that there is no intragenomic CBC is ~0.99. KW - citrus KW - concerted evolution KW - DNA sequences KW - Genome evolution KW - Phylogenetics KW - plant evolution KW - sequence alignment KW - sequence databases Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96450 ER - TY - JOUR A1 - Prelog, Martina T1 - Vaccination in Patients with Rheumatoid Arthritis Receiving Immunotherapies JF - Clinical & Cellular Immunology N2 - Patients with rheumatoid arthritis (RA) are at higher risk to suffer from morbidity due to vaccine-preventable diseases and, thus, display an important target population to receive vaccines for protection from infectious complications. There have been only a few studies focusing on the administration of vaccines in RA patients with immunotherapy. Overall, antibody response rates against influenza or pneumococcal disease appeared to be only slightly lower than expected in healthy individuals. Crucial problems in the interpretation of data from studies in RA patients vaccinated against influenza and pneumococcal disease are the impaired comparability of studies due to different study designs and type of vaccines used, different health states among RA patients, heterogeneity in treatments including concomitant therapy with conventional DMARDs and glucocorticoids in addition to biological agents. Assessment of vaccination status should be performed in the initial work-up of patients with RA and should ideally be administered before initiation of immunotherapies or during stable disease. Due to differences in antibody responses and uncertainty regarding maintenance of protective antibodies, routine controls for antibody titers and specific strategies for earlier re-vaccination might be scheduled for patients with RA. KW - Immunotherapy KW - Anti-TNF-alpha agents KW - Rituximab KW - Tocilizumab KW - Abatacept KW - Pneumococcal vaccination KW - Influenza vaccination Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96446 ER - TY - JOUR A1 - Prelog, Martina A1 - Almanzar, Giovanni A1 - Eberle, Gernot A1 - Lassacher, Andrea A1 - Specht, Christian A1 - Koppelstaetter, Christian A1 - Heinz-Erian, Peter A1 - Trawöger, Rudolf A1 - Bernhard, David T1 - Maternal cigarette smoking and its effect on neonatal lymphocyte subpopulations and replication JF - BMC Pediatrics N2 - Background Significant immunomodulatory effects have been described as result of cigarette smoking in adults and pregnant women. However, the effect of cigarette smoking during pregnancy on the lymphocyte subpopulations in newborns has been discussed, controversially. Methods In a prospective birth cohort, we analyzed the peripheral lymphocyte subpopulations of smoking (SM) and non-smoking mothers (NSM) and their newborns and the replicative history of neonatal, mostly naive CD4 + CD45RA + T cells by measurements of T-cell-receptor-excision-circles (TRECs), relative telomere lengths (RTL) and the serum cytokine concentrations. Results SM had higher lymphocyte counts than NSM. Comparing SM and NSM and SM newborns with NSM newborns, no significant differences in proportions of lymphocyte subpopulations were seen. Regardless of their smoking habits, mothers had significantly lower naive T cells and higher memory and effector T cells than newborns. NSM had significantly lower percentages of CD4 + CD25++ T cells compared to their newborns, which was not significant in SM. There were no differences regarding cytokine concentrations in newborns of SM and NSM. However, NSM had significantly higher Interleukin-7 concentrations than their newborns. Regardless of smoking habits of mothers, newborns had significantly longer telomeres and higher TRECs than their mothers. Newborns of SM had significantly longer telomeres than newborns of NSM. Conclusions Apart from higher lymphocyte counts in SM, our results did not reveal differences between lymphocyte subpopulations of SM and NSM and their newborns, respectively. Our finding of significantly longer RTL in newborns of SM may reflect potential harm on lymphocytes, such as cytogenetic damage induced by smoking. KW - Cigarette smoking KW - Lymphocytes KW - T cell receptor excision circles KW - Telomeres Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96435 UR - http://www.biomedcentral.com/1471-2431/13/57 ER - TY - JOUR A1 - Platte, Petra A1 - Herbert, Cornelia A1 - Pauli, Paul A1 - Breslin, Paul A. S. T1 - Oral Perceptions of Fat and Taste Stimuli Are Modulated by Affect and Mood Induction JF - PLoS ONE N2 - This study examined the impact of three clinical psychological variables (non-pathological levels of depression and anxiety, as well as experimentally manipulated mood) on fat and taste perception in healthy subjects. After a baseline orosensory evaluation, ‘sad’, ‘happy’ and ‘neutral’ video clips were presented to induce corresponding moods in eighty participants. Following mood manipulation, subjects rated five different oral stimuli, appearing sweet, umami, sour, bitter, fatty, which were delivered at five different concentrations each. Depression levels were assessed with Beck’s Depression Inventory (BDI) and anxiety levels were assessed via the Spielberger’s STAI-trait and state questionnaire. Overall, subjects were able to track the concentrations of the stimuli correctly, yet depression level affected taste ratings. First, depression scores were positively correlated with sucrose ratings. Second, subjects with depression scores above the sample median rated sucrose and quinine as more intense after mood induction (positive, negative and neutral). Third and most important, the group with enhanced depression scores did not rate low and high fat stimuli differently after positive or negative mood induction, whereas, during baseline or during the non-emotional neutral condition they rated the fat intensity as increasing with concentration. Consistent with others’ prior observations we also found that sweet and bitter stimuli at baseline were rated as more intense by participants with higher anxiety scores and that after positive and negative mood induction, citric acid was rated as stronger tasting compared to baseline. The observation that subjects with mild subclinical depression rated low and high fat stimuli similarly when in positive or negative mood is novel and likely has potential implications for unhealthy eating patterns. This deficit may foster unconscious eating of fatty foods in sub-clinical mildly depressed populations. KW - analysis of variance KW - anxiety KW - citric acid KW - depression KW - glutamate KW - quinine KW - sensory perception KW - sucrose Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96421 ER - TY - JOUR A1 - Streinzer, Martin A1 - Brockmann, Axel A1 - Nagaraja, Narayanappa A1 - Spaethe, Johannes T1 - Sex and Caste-Specific Variation in Compound Eye Morphology of Five Honeybee Species JF - PLoS ONE N2 - Ranging from dwarfs to giants, the species of honeybees show remarkable differences in body size that have placed evolutionary constrains on the size of sensory organs and the brain. Colonies comprise three adult phenotypes, drones and two female castes, the reproductive queen and sterile workers. The phenotypes differ with respect to tasks and thus selection pressures which additionally constrain the shape of sensory systems. In a first step to explore the variability and interaction between species size-limitations and sex and caste-specific selection pressures in sensory and neural structures in honeybees, we compared eye size, ommatidia number and distribution of facet lens diameters in drones, queens and workers of five species (Apis andreniformis, A. florea, A. dorsata, A. mellifera, A. cerana). In these species, male and female eyes show a consistent sex-specific organization with respect to eye size and regional specialization of facet diameters. Drones possess distinctly enlarged eyes with large dorsal facets. Aside from these general patterns, we found signs of unique adaptations in eyes of A. florea and A. dorsata drones. In both species, drone eyes are disproportionately enlarged. In A. dorsata the increased eye size results from enlarged facets, a likely adaptation to crepuscular mating flights. In contrast, the relative enlargement of A. florea drone eyes results from an increase in ommatidia number, suggesting strong selection for high spatial resolution. Comparison of eye morphology and published mating flight times indicates a correlation between overall light sensitivity and species-specific mating flight times. The correlation suggests an important role of ambient light intensities in the regulation of species-specific mating flight times and the evolution of the visual system. Our study further deepens insights into visual adaptations within the genus Apis and opens up future perspectives for research to better understand the timing mechanisms and sensory physiology of mating related signals. KW - eyes KW - foraging KW - honey bees KW - insect flight KW - physiological parameters KW - sensory systems KW - vision KW - visual system Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96412 ER - TY - JOUR A1 - Schulze, Katja A1 - Tillich, Ulrich M. A1 - Dandekar, Thomas A1 - Frohme, Marcus T1 - PlanktoVision – an automated analysis system for the identification of phytoplankton JF - BMC Bioinformatics N2 - Background Phytoplankton communities are often used as a marker for the determination of fresh water quality. The routine analysis, however, is very time consuming and expensive as it is carried out manually by trained personnel. The goal of this work is to develop a system for an automated analysis. Results A novel open source system for the automated recognition of phytoplankton by the use of microscopy and image analysis was developed. It integrates the segmentation of the organisms from the background, the calculation of a large range of features, and a neural network for the classification of imaged organisms into different groups of plankton taxa. The analysis of samples containing 10 different taxa showed an average recognition rate of 94.7% and an average error rate of 5.5%. The presented system has a flexible framework which easily allows expanding it to include additional taxa in the future. Conclusions The implemented automated microscopy and the new open source image analysis system - PlanktoVision - showed classification results that were comparable or better than existing systems and the exclusion of non-plankton particles could be greatly improved. The software package is published as free software and is available to anyone to help make the analysis of water quality more reproducible and cost effective. KW - Bioinformatik Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96395 UR - http://www.biomedcentral.com/1471-2105/14/115 ER - TY - JOUR A1 - Kozjak‑Pavlovic, Vera A1 - Ott, Christine A1 - Utech, Mandy A1 - Goetz, Monika A1 - Rudel, Thomas T1 - Requirements for the import of neisserial Omp85 into the outer membrane of human mitochondria JF - Bioscience Reports N2 - β-Barrel proteins are present only in the outer membranes of Gram-negative bacteria, chloroplasts and mitochondria. Fungal mitochondria were shown to readily import and assemble bacterial β-barrel proteins, but human mitochondria exhibit certain selectivity. Whereas enterobacterial β-barrel proteins are not imported, neisserial ones are. Of those, solely neisserial Omp85 is integrated into the outer membrane of mitochondria. In this study, we wanted to identify the signal that targets neisserial β-barrel proteins to mitochondria. We exchanged parts of neisserial Omp85 and PorB with their Escherichia coli homologues BamA and OmpC. For PorB, we could show that its C-terminal quarter can direct OmpC to mitochondria. In the case of Omp85, we could identify several amino acids of the C-terminal β-sorting signal as crucial for mitochondrial targeting. Additionally, we found that at least two POTRA (polypeptide-transport associated) domains and not only the β-sorting signal of Omp85 are needed for its membrane integration and function in human mitochondria. We conclude that the signal that directs neisserial β-barrel proteins to mitochondria is not conserved between these proteins. Furthermore, a linear mitochondrial targeting signal probably does not exist. It is possible that the secondary structure of β-barrel proteins plays a role in directing these proteins to mitochondria. KW - β-barrel KW - mitochondrion KW - Omp85 KW - PorB KW - POTRA domain Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96381 ER - TY - JOUR A1 - Gageik, Nils A1 - Strohmeier, Michael A1 - Montenegro, Sergio T1 - An Autonomous UAV with an Optical Flow Sensor for Positioning and Navigation JF - International Journal of Advanced Robotic Systems N2 - A procedure to control all six DOF (degrees of freedom) of a UAV (unmanned aerial vehicle) without an external reference system and to enable fully autonomous flight is presented here. For 2D positioning the principle of optical flow is used. Together with the output of height estimation, fusing ultrasonic, infrared and inertial and pressure sensor data, the 3D position of the UAV can be computed, controlled and steered. All data processing is done on the UAV. An external computer with a pathway planning interface is for commanding purposes only. The presented system is part of the AQopterI8 project, which aims to develop an autonomous flying quadrocopter for indoor application. The focus of this paper is 2D positioning using an optical flow sensor. As a result of the performed evaluation, it can be concluded that for position hold, the standard deviation of the position error is 10cm and after landing the position error is about 30cm. KW - Autonomous UAV KW - Quadrocopter KW - Quadrotor KW - Optical Flow KW - positioning KW - navigation Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96368 ER - TY - JOUR A1 - Prelog, Martina A1 - Schönlaub, Jörn A1 - Würzner, Reinhard A1 - Koppelstaetter, Christian A1 - Almanzar, Giovanni A1 - Brunner, Andrea A1 - Gasser, Martin A1 - Prommegger, Rupert A1 - Häusler, Gabriele A1 - Kapelari, Klaus A1 - Högler, Wolfgang T1 - Lower CD28+ T cell proportions were associated with CMV-seropositivity in patients with Hashimoto’s thyroiditis JF - BMC Endocrine Disorders N2 - Background Alterations in the naive T cell subpopulations have been demonstrated in patients with T cell mediated autoimmune disorders, reminiscent of immunological changes found in the elderly during immunosenescence, including the switch from CD45RA + to CD45RO + T cells and decreased thymic function with increased compensatory proliferative mechanisms, partly associated with latent Cytomegalovirus (CMV) infection. The present study was aimed to investigate proportions of lymphocytes, their relation to CMV-seropositivity and the replicative history of CD45RA + expressing T cells in Hashimoto’s thyroiditis (HT, n = 18) and healthy controls (HC, n = 70). Methods Proportions of peripheral T cells were investigated by flow cytometry. The replicative history was assessed by T cell receptor excision circles (TRECs) and relative telomere length (RTL). Expression of CD62L was analyzed by immunohistochemistry in thyroid sections. The role of CMV was assessed by serology, ELISPOT assay and in situ hybridization. Results Our results demonstrated a significant increase of CD28-negative T cells, associated with CMV-seropositivity in HT patients. HT showed abundant CD45RO + T cells with peripheral loss of CD62L-expressing CD8 + CD45RA + T cells, the latter mainly depending on disease duration. CD62L was expressed in thyroid lymphocyte infiltrations. The diagnosis of HT and within the HT group CMV-seropositivity were the main determinants for the loss of CD28 expression. RTL was not different between HC and HT. HT showed significantly lower TRECs in CD4 + CD45RA + T cells compared to HC. Conclusions Patients with HT display a peripheral T cell phenotype reminiscent of findings in elderly persons or other autoimmune disorders. Whether these mechanisms are primary or secondary to the immunological alterations of autoimmune conditions should be investigated in longitudinal studies which may open research on new therapeutic regimes for treatment of HT and associated autoimmune diseases. KW - Immunosenescence KW - CD62L KW - Regulatory T cells KW - TREC KW - Telomere Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96352 UR - http://www.biomedcentral.com/1472-6823/13/34 ER - TY - JOUR A1 - Mantel, Frederick A1 - Flentje, Michael A1 - Guckenberger, Matthias T1 - Stereotactic body radiation therapy in the re-irradiation situation – a review JF - Radiation Oncology N2 - Although locoregional relapse is frequent after definitive radiotherapy (RT) or multimodal treatments, re-irradiation is only performed in few patients even in palliative settings like e.g. vertebral metastasis. This is most due to concern about potentially severe complications, especially when large volumes are exposed to re-irradiation. With technological advancements in treatment planning the interest in re-irradiation as a local treatment approach has been reinforced. Recently, several studies reported re-irradiation for spinal metastases using SBRT with promising local and symptom control rates and simultaneously low rates of toxicity. These early data consistently indicate that SBRT is a safe and effective treatment modality in this clinical situation, where other treatment alternatives are rare. Similarly, good results have been shown for SBRT in the re-irradiation of head and neck tumors. Despite severe late adverse effects were reported in several studies, especially after single fraction doses >10 Gy, they appear less frequently compared to conventional radiotherapy. Few studies with small patient numbers have been published on SBRT re-irradiation for non-small cell lung cancer (NSCLC). Overall survival (OS) is limited by systemic progression and seems to depend particularly on patient selection. SBRT re-irradiation after primary SBRT should not be practiced in centrally located tumors due to high risk of severe toxicity. Only limited data is available for SBRT re-irradiation of pelvic tumors: feasibility and acceptable toxicity has been described, suggesting SBRT as a complementary treatment modality for local symptom control. KW - Stereotactic body radiotherapy KW - Radiosurgery KW - Re-irradiation KW - Locoregional recurrence KW - Normal tissue tolerance KW - Spinal metastases KW - NSCLC KW - Head and neck cancer KW - Pelvic tumors Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96346 UR - http://www.ro-journal.com/content/8/1/7 ER - TY - JOUR A1 - Luxenhofer, Robert A1 - Fetsch, Corinna T1 - Thermal Properties of Aliphatic Polypeptoids JF - Polymers N2 - A series of polypeptoid homopolymers bearing short (C1–C5) side chains of degrees of polymerization of 10–100 are studied with respect to thermal stability, glass transition and melting points. Thermogravimetric analysis of polypeptoids suggests stability to >200 °C. The study of the glass transition temperatures by differential scanning calorimetry revealed two dependencies. On the one hand an extension of the side chain by constant degree of polymerization decrease the glass transition temperatures (Tg) and on the other hand a raise of the degree of polymerization by constant side chain length leads to an increase of the Tg to a constant value. Melting points were observed for polypeptoids with a side chain comprising not less than three methyl carbon atoms. X-ray diffraction of polysarcosine and poly(N-ethylglycine) corroborates the observed lack of melting points and thus, their amorphous nature. Diffractograms of the other investigated polypeptoids imply that crystalline domains exist in the polymer powder. KW - peptoid KW - biomaterials KW - glass transition temperature KW - DSC KW - TGA KW - XRD Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96333 ER - TY - JOUR A1 - Almanzar, Giovanni A1 - Zlamy, Manuela A1 - Koppelstaetter, Christian A1 - Brunner, Andrea A1 - Jeller, Verena A1 - Duftner, Christina A1 - Dejaco, Christian A1 - Brunner, Juergen A1 - Prelog, Martina T1 - Increased replication of CD4+ naive T cells and changes in T cell homeostasis in a case of acute exacerbation of juvenile idiopathic arthritis: a case comparison study JF - Journal of Medical Case Reports N2 - Introduction Juvenile idiopathic arthritis is a heterogeneous T cell-mediated autoimmune disease with symptoms of premature aging of the immune system (immunosenescence). The present work is an investigation of immunosenescence parameters, such as quantity of naive and CD28- T cells, T cell receptor excision circles, relative telomere length and alterations of peripheral T cell replication, and was performed via comparison of a case of acute exacerbation of juvenile idiopathic arthritis against six patients with juvenile idiopathic arthritis with disease remission and six age-matched healthy donors over a follow-up course of 12 months. Case presentation Phenotypical T cell characterization and intracellular interferon γ, tumor necrosis factor α, and interleukin 2 production were studied in peripheral blood mononuclear cells from seven patients with juvenile idiopathic arthritis and six healthy control donors, with findings determined by flow cytometry. T cell receptor excision circles and relative telomere length quantification were performed on deoxyribonucleic acid isolated from naive (CD4+CD28+CD45RA+) T cells and investigated via reverse transcription polymerase chain reaction. Ki67 expression was studied by immunohistochemistry on naive T cells. The non-parametric Mann-Whitney U test and Wilcoxon test for two independent groups of variables were used to compare healthy donors with patients with juvenile idiopathic arthritis. During follow-up, patients with juvenile idiopathic arthritis showed lower total counts of naive and CD28-expressing T cells compared to healthy donors. Acute exacerbation led to low naive and CD28+ T cell populations and elevated proportions of Ki67-expressing CD4+ naive T cells. In conditions of exacerbation, T cell receptor excision circle numbers were in the lower range in patients with juvenile idiopathic arthritis and increased after follow-up. Healthy donors showed significantly higher relative telomere lengths compared to patients with juvenile idiopathic arthritis. Conclusions This investigation illustrates that the changes in T cell homeostasis in patients with juvenile idiopathic arthritis may be the result of several mechanisms, such as diminished thymus function and peripheral exertions to maintain the peripheral T cell pool. The results also demonstrate that hallmarks of immunosenescence such as decreased naive T cell levels and lower T cell receptor excision circle numbers can only be interpreted together with replication markers such as relative telomere length or Ki67 expression. KW - Exacerbation KW - Juvenile idiopathic arthritis KW - Naive T cells KW - T cell receptor excision circles Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96325 UR - http://www.jmedicalcasereports.com/content/7/1/135 ER - TY - JOUR A1 - Deeken, Rosalia A1 - Gohlke, Jochen A1 - Scholz, Claus-Juergen A1 - Kneitz, Susanne A1 - Weber, Dana A1 - Fuchs, Joerg A1 - Hedrich, Rainer T1 - DNA Methylation Mediated Control of Gene Expression Is Critical for Development of Crown Gall Tumors JF - PLoS Genetics N2 - Crown gall tumors develop after integration of the T-DNA of virulent Agrobacterium tumefaciens strains into the plant genome. Expression of the T-DNA–encoded oncogenes triggers proliferation and differentiation of transformed plant cells. Crown gall development is known to be accompanied by global changes in transcription, metabolite levels, and physiological processes. High levels of abscisic acid (ABA) in crown galls regulate expression of drought stress responsive genes and mediate drought stress acclimation, which is essential for wild-type-like tumor growth. An impact of epigenetic processes such as DNA methylation on crown gall development has been suggested; however, it has not yet been investigated comprehensively. In this study, the methylation pattern of Arabidopsis thaliana crown galls was analyzed on a genome-wide scale as well as at the single gene level. Bisulfite sequencing analysis revealed that the oncogenes Ipt, IaaH, and IaaM were unmethylated in crown galls. Nevertheless, the oncogenes were susceptible to siRNA–mediated methylation, which inhibited their expression and subsequently crown gall growth. Genome arrays, hybridized with methylated DNA obtained by immunoprecipitation, revealed a globally hypermethylated crown gall genome, while promoters were rather hypomethylated. Mutants with reduced non-CG methylation developed larger tumors than the wild-type controls, indicating that hypermethylation inhibits plant tumor growth. The differential methylation pattern of crown galls and the stem tissue from which they originate correlated with transcriptional changes. Genes known to be transcriptionally inhibited by ABA and methylated in crown galls became promoter methylated upon treatment of A. thaliana with ABA. This suggests that the high ABA levels in crown galls may mediate DNA methylation and regulate expression of genes involved in drought stress protection. In summary, our studies provide evidence that epigenetic processes regulate gene expression, physiological processes, and the development of crown gall tumors. KW - DNA methylation KW - DNA transcription KW - gene expression KW - oncogenes KW - plant genomics KW - sequence motif analysis KW - arabidopsis thaliana KW - agrobacterium tumefaciens Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96318 ER - TY - JOUR A1 - Astakhov, Georgy V. A1 - Fuchs, F. A1 - Soltamov, V. A. A1 - Väth, S. A1 - Baranov, P. G. A1 - Mokhov, E. N. A1 - Dyakonov, V. T1 - Silicon carbide light-emitting diode as a prospective room temperature source for single photons JF - Scientific Reports N2 - Generation of single photons has been demonstrated in several systems. However, none of them satisfies all the conditions, e.g. room temperature functionality, telecom wavelength operation, high efficiency, as required for practical applications. Here, we report the fabrication of light-emitting diodes (LEDs) based on intrinsic defects in silicon carbide (SiC). To fabricate our devices we used a standard semiconductor manufacturing technology in combination with high-energy electron irradiation. The room temperature electroluminescence (EL) of our LEDs reveals two strong emission bands in the visible and near infrared (NIR) spectral ranges, associated with two different intrinsic defects. As these defects can potentially be generated at a low or even single defect level, our approach can be used to realize electrically driven single photon source for quantum telecommunication and information processing. KW - semiconductors KW - inorganic LEDs KW - quantum optics KW - nanophotonics KW - plasmonics Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96308 ER - TY - JOUR A1 - Streng, Andrea A1 - Grote, Veit A1 - Carr, David A1 - Hagemann, Christine A1 - Liese, Johannes G. T1 - Varicella routine vaccination and the effects on varicella epidemiology – results from the Bavarian Varicella Surveillance Project (BaVariPro), 2006-2011 JF - BMC Infectious Diseases N2 - Background In 2004, routine varicella vaccination was recommended in Germany for children 11-14 months of age with one dose, and since 2009, with a second dose at 15-23 months of age. The effects on varicella epidemiology were investigated. Methods Data on varicella vaccinations, cases and complications were collected from annual parent surveys (2006-2011), monthly paediatric practice surveillance (Oct 2006 - Sep 2011; five varicella seasons) and paediatric hospital databases (2005-2009) in the area of Munich (about 238,000 paediatric inhabitants); annual incidences of cases and hospitalisations were estimated. Results Varicella vaccination coverage (1st dose) in children 18-36 months of age increased in two steps (38%, 51%, 53%, 53%, 66% and 68%); second-dose coverage reached 59% in the 2011 survey. A monthly mean of 82 (62%) practices participated; they applied a total of 50,059 first-dose and 40,541 second-dose varicella vaccinations, with preferential use of combined MMR-varicella vaccine after recommendation of two doses, and reported a total of 16,054 varicella cases <17 years of age. The mean number of cases decreased by 67% in two steps, from 6.6 (95%CI 6.1-7.0) per 1,000 patient contacts in season 2006/07 to 4.2 (95%CI 3.9-4.6) in 2007/08 and 4.0 (95%CI 3.6-4.3) in 2008/09, and further to 2.3 (95%CI 2.0-2.6) in 2009/10 and 2.2 (95%CI 1.9-2.5) in 2010/11. The decrease occurred in all paediatric age groups, indicating herd protection effects. Incidence of varicella was estimated as 78/1,000 children <17 years of age in 2006/07, and 19/1,000 in 2010/11. Vaccinated cases increased from 0.3 (95%0.2-0.3) per 1,000 patient contacts in 2006/07 to 0.4 (95%CI 0.3-0.5) until 2008/09 and decreased to 0.2 (95%CI 0.2-0.3) until 2010/11. The practices treated a total of 134 complicated cases, mainly with skin complications. The paediatric hospitals recorded a total of 178 varicella patients, including 40 (22.5%) with neurological complications and one (0.6%) fatality due to varicella pneumonia. Incidence of hospitalisations decreased from 7.6 per 100,000 children <17 years of age in 2005 to 4.3 in 2009, and from 21.0 to 4.7 in children <5 years of age. Conclusions Overall, the results show increasing acceptance and a strong impact of the varicella vaccination program, even with still suboptimal vaccination coverage. KW - Varicella KW - Surveillance KW - Coverage KW - Vaccination KW - Hospitalisation KW - Paediatric KW - Incidence Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96297 UR - http://www.biomedcentral.com/1471-2334/13/303 ER - TY - JOUR A1 - Alsheimer, Manfred A1 - Link, Jana A1 - Jahn, Daniel A1 - Schmitt, Johannes A1 - Göb, Eva A1 - Baar, Johannes A1 - Ortega, Sagrario A1 - Benavente, Ricardo T1 - The Meiotic Nuclear Lamina Regulates Chromosome Dynamics and Promotes Efficient Homologous Recombination in the Mouse JF - PLoS Genetics N2 - The nuclear lamina is the structural scaffold of the nuclear envelope and is well known for its central role in nuclear organization and maintaining nuclear stability and shape. In the past, a number of severe human disorders have been identified to be associated with mutations in lamins. Extensive research on this topic has provided novel important clues about nuclear lamina function. These studies have contributed to the knowledge that the lamina constitutes a complex multifunctional platform combining both structural and regulatory functions. Here, we report that, in addition to the previously demonstrated significance for somatic cell differentiation and maintenance, the nuclear lamina is also an essential determinant for germ cell development. Both male and female mice lacking the short meiosis-specific A-type lamin C2 have a severely defective meiosis, which at least in the male results in infertility. Detailed analysis revealed that lamin C2 is required for telomere-driven dynamic repositioning of meiotic chromosomes. Loss of lamin C2 affects precise synapsis of the homologs and interferes with meiotic double-strand break repair. Taken together, our data explain how the nuclear lamina contributes to meiotic chromosome behaviour and accurate genome haploidization on a mechanistic level. KW - homologous chromosomes KW - homologous recombination KW - lamins KW - Oocytes KW - spermatocytes KW - synapsis KW - telomeres KW - testes Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96285 ER - TY - JOUR A1 - Pielström, Steffen A1 - Roces, Flavio T1 - Sequential Soil Transport and Its Influence on the Spatial Organisation of Collective Digging in Leaf-Cutting Ants JF - PLoS ONE N2 - The Chaco leaf-cutting ant Atta vollenweideri (Forel) inhabits large and deep subterranean nests composed of a large number of fungus and refuse chambers. The ants dispose of the excavated soil by forming small pellets that are carried to the surface. For ants in general, the organisation of underground soil transport during nest building remains completely unknown. In the laboratory, we investigated how soil pellets are formed and transported, and whether their occurrence influences the spatial organisation of collective digging. Similar to leaf transport, we discovered size matching between soil pellet mass and carrier mass. Workers observed while digging excavated pellets at a rate of 26 per hour. Each excavator deposited its pellets in an individual cluster, independently of the preferred deposition sites of other excavators. Soil pellets were transported sequentially over 2 m, and the transport involved up to 12 workers belonging to three functionally distinct groups: excavators, several short-distance carriers that dropped the collected pellets after a few centimetres, and long-distance, last carriers that reached the final deposition site. When initiating a new excavation, the proportion of long-distance carriers increased from 18% to 45% within the first five hours, and remained unchanged over more than 20 hours. Accumulated, freshly-excavated pellets significantly influenced the workers' decision where to start digging in a choice experiment. Thus, pellets temporarily accumulated as a result of their sequential transport provide cues that spatially organise collective nest excavation. KW - animal behavior KW - ants KW - confidence interval KW - decision making KW - foraging KW - fungal structure KW - fungi KW - hormone transport Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96275 ER - TY - JOUR A1 - Kranke, Peter A1 - Girard, Thierry A1 - Lavand’homme, Patricia A1 - Melber, Andrea A1 - Jokinen, Johanna A1 - Muellenbach, Ralf M. A1 - Wirbelauer, Johannes A1 - Hönig, Arnd T1 - Must we press on until a young mother dies? Remifentanil patient controlled analgesia in labour may not be suited as a “poor man’s epidural” JF - BMC Pregnancy and Childbirth N2 - Background The epidural route is still considered the gold standard for labour analgesia, although it is not without serious consequences when incorrect placement goes unrecognized, e.g. in case of intravascular, intrathecal and subdural placements. Until now there has not been a viable alternative to epidural analgesia especially in view of the neonatal outcome and the need for respiratory support when long-acting opioids are used via the parenteral route. Pethidine and meptazinol are far from ideal having been described as providing rather sedation than analgesia, affecting the cardiotocograph (CTG), causing fetal acidosis and having active metabolites with prolonged half-lives especially in the neonate. Despite these obvious shortcomings, intramuscular and intravenously administered pethidine and comparable substances are still frequently used in delivery units. Since the end of the 90ths remifentanil administered in a patient-controlled mode (PCA) had been reported as a useful alternative for labour analgesia in those women who either don’t want, can’t have or don’t need epidural analgesia. Discussion In view of the need for conversion to central neuraxial blocks and the analgesic effect remifentanil has been demonstrated to be superior to pethidine. Despite being less effective in terms of the resulting pain scores, clinical studies suggest that the satisfaction with analgesia may be comparable to that obtained with epidural analgesia. Owing to this fact, remifentanil has gained a place in modern labour analgesia in many institutions. However, the fact that remifentanil may cause harm should not be forgotten when the use of this potent mu-agonist is considered for the use in labouring women. In the setting of one-to-one midwifery care, appropriate monitoring and providing that enough experience exists with this potent opioid and the treatment of potential complications, remifentanil PCA is a useful option in addition to epidural analgesia and other central neuraxial blocks. Already described serious consequences should remind us not refer to remifentanil PCA as a “poor man’s epidural” and to safely administer remifentanil with an appropriate indication. Summary Therefore, the authors conclude that economic considerations and potential cost-savings in conjunction with remifentanil PCA may not be appropriate main endpoints when studying this valuable method for labour analgesia. KW - Remifentanil KW - Epidural Analgesia KW - Labour Pain KW - Labour Analgesia KW - Patient Controlled Analgesia KW - Patient Satisfaction KW - Healthcare Cost KW - Healthcare Economics Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96262 UR - http://www.biomedcentral.com/1471-2393/13/139 ER - TY - JOUR A1 - Papoutsoglou, Nikolaos A1 - Burger, Maximilian A1 - Riedmiller, Hubertus T1 - Persistent painless hemospermia due to metastatic melanoma of the right seminal vesicle JF - BMC Urology N2 - Background Metastatic melanoma of the seminal vesicles is a very rare clinical entity and has been reported only once until today in a patient suffering from concomitant HIV infection 12 years ago. Case presentation We report a case of persistent, painless hemospermia in a young Caucasian caused by metastatic malignant melanoma of the right seminal vesicle. The diagnosis was established by magnetic resonance imaging and transrectal ultrasound-guided biopsy. In the subsequent diagnostic workup the primary location of the tumor remained unknown but concomitant pulmonary, hepatic and supraclavicular lymph node metastases have been detected. Despite immediate chemotherapy initiation the patient finally succumbed to his progressive disease six months later. Conclusions Malignant melanoma should be considered as a rare differential diagnosis of hemospermia after common causes have been ruled out. KW - Metastatic melanoma KW - Hemospermia KW - Seminal vesicle tumor KW - Ultrasound KW - Biopsy Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96254 UR - http://www.biomedcentral.com/1471-2490/13/43 ER - TY - JOUR A1 - Meule, Adrian A1 - Fath, Katharina A1 - Real, Ruben G. L. A1 - Sütterlin, Stefan A1 - Vögele, Claus A1 - Kübler, Andrea T1 - Quality of life, emotion regulation, and heart rate variability in individuals with intellectual disabilities and concomitant impaired vision JF - Psychology of Well-Being: Theory, Research and Practice N2 - Background Positive associations have been found between quality of life, emotion regulation strategies, and heart rate variability (HRV) in people without intellectual disabilities. However, emotion regulation and HRV have rarely been investigated in people with intellectual disabilities. Assessment of subjectively reported quality of life and emotion regulation strategies in this population is even more difficult when participants are also visually impaired. Methods Subjective and objective quality of life, emotion regulation strategies, and HRV at rest were measured in a sample of people with intellectual disabilities and concomitant impaired vision (N = 35). Heart rate was recorded during a 10 min resting period. For the assessment of quality of life and emotion regulation, custom made tactile versions of questionnaire-based instruments were used that enabled participants to grasp response categories. Results The combined use of reappraisal and suppression as emotion regulation strategies was associated with higher HRV and quality of life. HRV was associated with objective quality of life only. Emotion regulation strategies partially mediated the relationship between HRV and quality of life. Conclusions Results replicate findings about associations between quality of life, emotion regulation, and HRV and extend them to individuals with intellectual disabilities. Furthermore, this study demonstrated that quality of life and emotion regulation could be assessed in such populations even with concomitant impaired vision with modified tactile versions of established questionnaires. HRV may be used as a physiological index to evaluate physical and affective conditions in this population. KW - Quality of life KW - Emotion regulation KW - Heart rate variability KW - Cardiac autonomic regulation KW - Intellectual disability KW - Impaired vision Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96247 UR - http://www.psywb.com/content/3/1/1 ER - TY - THES A1 - Skiera, Christina T1 - 1H NMR spectroscopic determination of deterioration marker compounds in fats and oils T1 - 1H-NMR spektroskopische Bestimmung von Fettverderbsmarkern in Fetten und Ölen N2 - In food and pharmaceutical analysis, the classical indices peroxide value (PV), acid value (AV) and p-anisidine value (ANV) still play an important role as quality and authenticity control parameters of fats and oils. These indices are sum parameters for certain deterioration products (PV for hydroperoxides, AV for free fatty acids, ANV for aldehydes) and are obtained using volumetric or UV/VIS spectroscopic analytical approaches. 1H NMR spectroscopy provides a fast and simple alternative to these classical approaches. In the present work, novel 1H NMR methods to determine hydroperoxides, free fatty acids and aldehydes in fats and oils were developed. Hydroperoxides: The influence of solvent, water, free fatty acids and sample weight on the hydroperoxide group proton (OOH) signal was investigated. On the basis of the obtained results, the sample preparation procedure of the new 1H NMR method was established. A rough assignment of the hydroperoxide group signals in edible fats and oils to methyl oleate, methyl linoleate and methyl linolenate was conducted. Furthermore, to gain information on how many different hydroperoxide species originate from trioleate autoxidation, a kinetic study on trioleate monohydroperoxides was performed. The evaluation of the data strongly indicates that all of the conceivable 18 trioleate monohydroperoxides were formed during trioleate autoxidation. The analytical performance of the NMR method was compared to that of the classical PV approach by means of the so-called “relative sensitivity” according to Mandel. It was shown that both methods exhibit a similar analytical performance. A total of 444 edible oil samples were analysed using both methods. For some oil varieties considerable discrepancies were found between the results. In the case of black seed oil and olive oil two substances were identified that influence the classical PV determination and thus cause positive (black seed oil) and negative (olive oil) deviations from the theoretical PV expected from the NMR values. Free fatty acids: In order to find the optimal solvent mixture to measure the carboxyl group protons (COOH) of free fatty acids in fats and oils, the effect of solvent on the COOH signal was investigated for different mixtures of CDCl3 and DMSO-d6. The comparison of the NMR method with the classical AV method by means of the relative sensitivity revealed that both methods exhibit a similar analytical performance. 420 edible oil samples were analysed by both approaches. Except for pumpkin seed oil, where slight deviations were observed, there was a good compliance between the results obtained from the two methods. Furthermore, the applicability of the 1H NMR assay to further lipids with relevance in pharmacy was tested. For hard fat, castor oil, waxes and oleyl oleate modifications of the original sample preparation procedure of the NMR method were necessary to achieve comparable results for both methods. Aldehydes: The new 1H NMR method enables the determination of the molar amounts of n-alkanals, (E)-2-alkenals and (E,E)-2,4-alkadienals. It was illustrated that the ANV can be modelled as a linear combination of the NMR integrals of these aldehyde species. A functional relationship was derived on the basis In conclusion, the new 1H NMR methods provide an excellent alternative to of calibration experiments. The suitability of the model was shown by comparing the NMR-determined ANVs with the measured classical ANVs of 79 commercially available edible oils of different oil types. In conclusion, the new 1H NMR methods provide an excellent alternative to the determination of the classical indices PV, AV and ANV. They have several advantages over the classical methods including the consumption of small solvent amounts, the ability to automatize measurement and to acquire several different parameters out of the same NMR spectrum. Especially concerning their selectivity, the 1H NMR methods are highly superior to the classical methods. N2 - Im Bereich der Lebensmittel- und pharmazeutischen Analytik besitzen die klassischen Fettkennzahlen Peroxidzahl (POZ), Säurezahl (SZ) und p-Anisidinzahl (AnZ) bis heute eine große Bedeutung in der Qualitäts- und Authentizitätskontrolle von Fetten und Ölen. Diese Kennzahlen sind Summenparameter für bestimmte Verderbsprodukte (POZ für Hydroperoxide, SZ für freie Fettsäuren, AnZ für Aldehyde) und werden mittels volumetrischer oder UV/VIS-spektroskopischer Verfahren ermittelt. 1H-NMR Spektroskopie bietet eine einfache und schnelle Alternative zu den klassischen Fettkennzahlen. In der vorliegenden Arbeit wurden neue 1H-NMR Methoden zur Bestimmung von Hydroperoxiden, freien Fettsäuren und Aldehyden in Fetten und Ölen entwickelt. Hydroperoxide: Der Einfluss des Lösungsmittels, von Wasser, freien Fettsäuren und der Probeneinwaage auf das Hydroperoxidgruppensignal wurde untersucht. Anhand der Ergebnisse wurde die Probenaufarbeitungsprozedur für die neue 1H-NMR Methode erarbeitet. Es wurde eine grobe Zuordnung der Hydroperoxidgruppensignale in Fetten und Ölen zu Methyloleat, Methyllinoleat und Methylinolenat vorgenommen. Weiterhin wurde eine kinetische Studie für Trioleat-Monohydroperoxide durchgeführt, um Informationen darüber zu erhalten, wieviel verschiedene Hydroperoxidspezies bei der Autoxidation von Trioleat gebildet werden. Das Ergebnis weist stark darauf hin, dass alle 18 möglichen Monohydroperoxide entstehen. Die analytische Leistungsfähigkeit der NMR-Methode und der klassischen POZ-Methode wurde mit Hilfe der sog. „relative sensitivity“ nach Mandel verglichen. Es wurde gezeigt, dass beide Methoden eine vergleichbare analytische Leistungsfähigkeit besitzen. Insgesamt wurden 444 Speiseölproben mit beiden Methoden untersucht. Für einige Ölarten wurden beträchtliche Diskrepanzen zwischen der POZ und den NMR-Ergebnissen beobachtet. Im Fall von Schwarzkümmelöl und Olivenöl wurden zwei Substanzen identifiziert, die bei der klassischen POZ-Bestimmung miterfasst werden und dadurch für die positiven (Schwarzkümmelöl) und negativen (Olivenöl) Abweichungen von den aufgrund der NMR-Ergebnisse theoretisch zu erwartenden POZ-Werten verantwortlich sind. Freie Fettsäuren: Zur Optimierung der Messbedingungen wurde der Einfluss des Lösungsmittels auf das Carboxylgruppensignal von freien Fettsäuren für verschiedene Mischungen von CDCl3 und DMSO-d6 untersucht. Die NMR-Methode wurde mit der klassischen SZ-Methode mit Hilfe der „relative sensitivity“ verglichen. Dabei wurde eine vergleichbare analytische Leistungsfähigkeit für beide Methoden festgestellt. 420 Speiseöle wurden mit beiden Methoden analysiert. Mit Ausnahme der Analysenergebnisse von Kürbiskernölen, die geringe Abweichungen zeigten, wurde eine gute Übereinstimmung der Ergebnisse beider Methoden beobachtet. Weiterhin wurde die Anwendbarkeit der 1H-NMR-Methode für weitere Lipide mit Bedeutung in der Pharmazie getestet. Durch Modifikation der ursprünglichen Analysenvorschrift der NMR-Methode wurden für Hartfett, Rizinusöl, Wachse und Oleyloleat mit beiden Methoden vergleichbare Ergebnisse erhalten. Aldehyde: Mit der neuen 1H-NMR Methode können die molaren Gehalte von n-Alkanalen, (E)-2-Alkenalen und (E,E)-2,4-Alkadienalen bestimmt werden. Die vorliegende Arbeit zeigt, dass die AnZ als eine Linearkombination der normalisierten NMR-Integrale der Aldehyde modelliert werden kann. Ein funktionaler Zusammenhang wurde auf Grundlage von Kalibrationsexperimenten abgeleitet. Die Eignung des Modells wurde durch den Vergleich der mittels NMR bestimmten AnZ mit der klassischen AnZ von 79 kommerziell erhältlichen Speiseölen verschiedener Ölarten gezeigt. Abschließend lässt sich sagen, dass die neuen 1H-NMR-Methoden eine sehr gute Alternative zu der Bestimmung der klassischen Fettkennzahlen POZ, SZ and AnZ darstellen. Sie besitzen mehrer Vorteile gegenüber den klassischen Methoden wie beispielsweise der geringe Lösungsmittelverbrauch, die Automatisierbarkeit der Messung und die Möglichkeit mehrere unterschiedliche Parameter aus demselben NMR-Spektrum bestimmen zu können. Es hat sich gezeigt, dass die 1H-NMR-Methoden den klassischen Methoden insbesondere hinsichtlich ihrer Selektivität weit überlegen sind und damit fehlerhafte Befunde, wie sie z. B. bei der POZ-Bestimmung auftreten können, vermieden werden. KW - Fett KW - Öl KW - Verderb KW - NMR-Spektroskopie KW - Fettkennzahlen KW - lipid deterioration markers KW - hydroperoxides KW - free fatty acids KW - aldehydes KW - lipid deterioration KW - Protonen-NMR-Spektroskopie KW - Lipide KW - Hydroperoxide KW - Aldehyde Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-95756 ER - TY - JOUR A1 - Schuster, Frank A1 - Johannsen, Stephan A1 - Schneiderbanger, Daniel A1 - Roewer, Norbert T1 - Evaluation of suspected malignant hyperthermia events during anesthesia JF - BMC Anesthesiology N2 - Background Malignant hyperthermia (MH), a metabolic myopathy triggered by volatile anesthetics and depolarizing muscle relaxants, is a potentially lethal complication of general anesthesia in susceptible patients. The implementation of modern inhalation anesthetics that research indicates as less potent trigger substances and the recommended limitations of succinylcholine use, suggests there may be considerable decline of fulminant MH cases. In the presented study, the authors analyzed suspected MH episodes during general anesthesia of patients that were referred to the Wuerzburg MH unit between 2007 and 2011, assuming that MH is still a relevant anesthetic problem in our days. Methods With approval of the local ethics committee data of patients that underwent muscle biopsy and in vitro contracture test (IVCT) between 2007 and 2011 were analyzed. Only patients with a history of suspected MH crisis were included in the study. The incidents were evaluated retrospectively using anesthetic documentation and medical records. Results Between 2007 and 2011 a total of 124 patients were tested. 19 of them were referred because of suspected MH events; 7 patients were diagnosed MH-susceptible, 4 MH-equivocal and 8 MH-non-susceptible by IVCT. In a majority of cases masseter spasm after succinylcholine had been the primary symptom. Cardiac arrhythmias and hypercapnia frequently occurred early in the course of events. Interestingly, dantrolene treatment was initiated in a few cases only. Conclusions MH is still an important anesthetic complication. Every anesthetist must be aware of this life-threatening syndrome at any time. The rapid onset of adequate therapy is crucial to avoid major harm and possibly lethal outcome. Dantrolene must be readily available wherever MH triggering agents are used for anesthesia. KW - Malignant hyperthermia KW - In vitro contracture test KW - Succinylcholine KW - Volatile anesthetics Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96231 UR - http://www.biomedcentral.com/1471-2253/13/24 ER - TY - JOUR A1 - Harrach, Bastian T1 - Recent Progress on the Factorization Method for Electrical Impedance Tomography JF - Computational and Mathematical Methods in Medicine N2 - The Factorization Method is a noniterative method to detect the shape and position of conductivity anomalies inside an object. The method was introduced by Kirsch for inverse scattering problems and extended to electrical impedance tomography (EIT) by Brühl and Hanke. Since these pioneering works, substantial progress has been made on the theoretical foundations of the method. The necessary assumptions have been weakened, and the proofs have been considerably simplified. In this work, we aim to summarize this progress and present a state-of-the-art formulation of the Factorization Method for EIT with continuous data. In particular, we formulate the method for general piecewise analytic conductivities and give short and self-contained proofs. KW - Mathematik Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96229 ER - TY - JOUR A1 - Anders, Diana A1 - Trautmann, Axel T1 - Allergic anaphylaxis due to subcutaneously injected heparin JF - Allergy, Asthma & Clinical Immunology N2 - Heparins are one of the most used class of anticoagulants in daily clinical practice. Despite their widespread application immune-mediated hypersensitivity reactions to heparins are rare. Among these, the delayed-type reactions to s.c. injected heparins are well-known usually presenting as circumscribed eczematous plaques at the injection sites. In contrast, potentially life-threatening systemic immediate-type anaphylactic reactions to heparins are extremely rare. Recently, some cases of non-allergic anaphylaxis could be attributed to undesirable heparin contaminants. A 43-year-old patient developed severe anaphylaxis symptoms within 5–10 minutes after s.c. injection of enoxaparin. Titrated skin prick testing with wheal and flare responses up to an enoxaparin dilution of 1:10.000 indicated a probable allergic mechanism of the enoxaparin-induced anaphylaxis. The basophil activation test as an additional in-vitro test method was negative. Furthermore, skin prick testing showed rather broad cross-reactivity among different heparin preparations tested. In the presented case, history, symptoms, and results of skin testing strongly suggested an IgE-mediated allergic hypersensitivity against different heparins. Therefore, as safe alternative anticoagulants the patient could receive beneath coumarins the hirudins or direct thrombin inhibitors. Because these compounds have a completely different molecular structure compared with the heparin-polysaccharides. KW - Anaphylaxis KW - Allergy KW - Basophil activation test KW - Enoxaparin KW - Heparin KW - Hypersensitivity KW - Immunoglobulin E KW - Immediate-type Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96214 UR - http://www.aacijournal.com/content/9/1/1 ER - TY - JOUR A1 - Engel, Volker A1 - Albert, Julian A1 - Schubert, Alexander T1 - Two-dimensional vibronic spectroscopy of molecular predissociation JF - New Journal of Physics N2 - We calculate two-dimensional (2D) spectra reflecting the time-dependent electronic predissociation of a diatomic molecule. The laser-excited electronic state is coupled non-adiabatically to a fragment channel, leading to the decay of the prepared quasi-bound states. This decay can be monitored by the three-pulse configuration employed in optical 2D spectroscopy. It is shown that in this way it is possible to state-selectively characterize the time-dependent population of resonance states with different lifetimes. A model of the NaI molecule serves as a numerical example. KW - computational physics KW - atomic physics KW - molecular physics Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96199 ER - TY - JOUR A1 - Gunreben, Ignaz A1 - Geis, Christian A1 - Kleinschnitz, Christoph T1 - Acute tetraparesis secondary to bilateral precentral gyral cerebral ischemia: a case report JF - Journal of Medical Case Reports N2 - Introduction Sudden tetraparesis represents a neurological emergency and is most often caused by traumatic spinal cord injury, spinal epidural bleeding or brainstem ischemia and less frequently by medial disc herniation or spinal ischemia. Case presentation Here we report the rare case of an 82-year-old Caucasian man who developed severe tetraparesis four days after radical cystoprostatectomy. An emergency diagnostic study for spinal cord affection was normal. Brain magnetic resonance imaging revealed acute bilateral ischemic strokes in the precentral gyri as the underlying cause. Conclusions This case report underlines the need to also consider unusual causes of tetraparesis in an emergency situation apart from spinal cord or brain stem injury in order not to leave severe symptomatology unclear and possibly miss therapeutic options. KW - Medizin Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96179 UR - http://www.jmedicalcasereports.com/content/7/1/61 ER - TY - JOUR A1 - Prelog, Martina A1 - Zlamy, Manuela A1 - Kofler, Sabine A1 - Orth, Dorothea A1 - Würzner, Reinhard A1 - Heinz-Erian, Peter A1 - Streng, Andrea T1 - The impact of Rotavirus mass vaccination on hospitalization rates, nosocomial Rotavirus gastroenteritis and secondary blood stream infections JF - BMC Infectious Diseases N2 - Background The aim of the study was to evaluate the effects of universal mass vaccination (UMV) against rotavirus (RV) on the hospitalization rates, nosocomial RV infections and RV-gastroenteritis (GE)-associated secondary blood stream infections (BSI). Methods The retrospective evaluation (2002–2009) by chart analysis included all clinically diagnosed and microbiologically confirmed RV-GE cases in a large tertiary care hospital in Austria. The pre-vaccination period (2002–2005) was compared with the recommended and early funded (2006–2007) and the funded (2008–2009) vaccination periods. Primary outcomes were RV-GE-associated hospitalizations, secondary outcomes nosocomial RV disease, secondary BSI and direct hospitalization costs for children and their accompanying persons. Results In 1,532 children with RV-GE, a significant reduction by 73.9% of hospitalized RV-GE cases per year could be observed between the pre-vaccination and the funded vaccination period, which was most pronounced in the age groups 0–11 months (by 87.8%), 6–10 years (by 84.2%) and 11–18 years (88.9%). In the funded vaccination period, a reduction by 71.9% of nosocomial RV-GE cases per year was found compared to the pre-vaccination period. Fatalities due to nosocomial RV-GE were only observed in the pre-vaccination period (3 cases). Direct costs of hospitalized, community-acquired RV-GE cases per year were reduced by 72.7% in the funded vaccination period. The reduction of direct costs for patients (by 86.9%) and accompanying persons (86.2%) was most pronounced in the age group 0–11 months. Conclusions UMV may have contributed to the significant decrease of RV-GE-associated hospitalizations, to a reduction in nosocomial RV infections and RV-associated morbidity due to secondary BSI and reduced direct hospitalization costs. The reduction in nosocomial cases is an important aspect considering severe disease courses in hospitalized patients with co-morbidities and death due to nosocomial RV-GE. KW - Rotavirus KW - Gastroenteritis KW - Blood stream infection KW - Children KW - Universal mass vaccination Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96147 UR - http://www.biomedcentral.com/1471-2334/13/112 ER - TY - JOUR A1 - Brixner, Tobias A1 - Koch, Federico A1 - Kullmann, Martin A1 - Selig, Ulrike A1 - Nuernberger, Patrick A1 - Götz, Daniel C. G. A1 - Bringmann, Gerhard T1 - Coherent two-dimensional electronic spectroscopy in the Soret band of a chiral porphyrin dimer JF - New Journal of Physics N2 - Using coherent two-dimensional (2D) electronic spectroscopy in fully noncollinear geometry, we observe the excitonic coupling of β,β'-linked bis[tetraphenylporphyrinato-zinc(II)] on an ultrafast timescale in the excited state. The results for two states in the Soret band originating from an excitonic splitting are explained by population transfer with approximately 100 fs from the energetically higher to the lower excitonic state. This interpretation is consistent with exemplary calculations of 2D spectra for a model four-level system with coupling. KW - optics KW - quantum optics KW - laser Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96139 ER - TY - JOUR A1 - Nedopil, Alexander A1 - Raab, Peter A1 - Rudert, Maximilian T1 - Desmoplastic Fibroma: A Case Report with Three Years of Clinical and Radiographic Observation and Review of the Literature JF - Open Orthopaedics Journal N2 - Background: Desmoplastic fibroma (DF) is an extremely rare locally aggressive bone tumor with an incidence of 0.11% of all primary bone tumors. The typical clinical presentation is pain and swelling above the affected area. The most common sites of involvement are the mandible and the metaphysis of long bones. Histologically and biologically, desmoplastic fibroma mimics extra-abdominal desmoid tumor of soft tissue. Case Presentation and Literature Review: A case of a 27-year old man with DF in the ilium, including the clinical, radiological and histological findings over a 4-year period is presented here. CT scans performed in 3-year intervals prior to surgical intervention were compared with respect to tumor extension and cortical breakthrough. The patient was treated with curettage and grafting based on anatomical considerations. Follow-up CT scans over 18-months are also documented here. Additionally, a review and analysis of 271 cases including the presented case with particular emphasis on imaging patterns in MRI and CT as well as treatment modalities and outcomes are presented. Conclusion: In patients with desmoplastic fibroma, CT is the preferred imaging technique for both the diagnosis of intraosseus tumor extension and assessment of cortical involvement, whereas MRI is favored for the assessment of extraosseus tumor growth and preoperative planning. While tumor resection remains the preferred treatment for DF, curettage and grafting prove to be an acceptable alternative treatment modality with close follow-up when resection is not possible. Curettage and grafting have been shown to provide good clinical results and are associated with long recurrence free intervals. KW - Desmoplastic fibroma KW - rare bone tumor KW - benign bone tumor KW - curettage KW - autograft Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96123 ER - TY - JOUR A1 - Djuzenova, Cholpon S. A1 - Elsner, Ines A1 - Katzer, Astrid A1 - Worschech, Eike A1 - Distel, Luitpold V. A1 - Flentje, Michael A1 - Polat, Bülent T1 - Radiosensitivity in breast cancer assessed by the histone γ-H2AX and 53BP1 foci JF - Radiation Oncology N2 - Background High expression of constitutive histone γ-H2AX, a sensitive marker of DNA damage, might be indicative of defective DNA repair pathway or genomic instability. 53BP1 (p53-binding protein 1) is a conserved checkpoint protein with properties of a DNA double-strand breaks sensor. This study explores the relationship between the clinical radiosensitivity of tumor patients and the expression/induction of γ-H2AX and 53BP1 in vitro. Methods Using immunostaining, we assessed spontaneous and radiation-induced foci of γ-H2AX and 53 BP1 in peripheral blood mononuclear cells derived from unselected breast cancer (BC) patients (n=57) undergoing radiotherapy (RT). Cells from apparently healthy donors (n=12) served as references. Results Non-irradiated cells from controls and unselected BC patients exhibited similar baseline levels of DNA damage assessed by γ-H2AX and 53BP1 foci. At the same time, the γ-H2AX assay of in vitro irradiated cells revealed significant differences between the control group and the group of unselected BC patients with respect to the initial (0.5 Gy, 30 min) and residual (2 Gy, 24 h post-radiation) DNA damage. The numbers of 53BP1 foci analyzed in 35 BC patients were significantly higher than in controls only in case of residual DNA damage. A weak correlation was found between residual foci of both proteins tested. In addition, cells from cancer patients with an adverse acute skin reaction (grade 3) to RT showed significantly increased radiation-induced γ-H2AX foci and their protracted disappearance compared to the group of BC patients with normal skin reaction (grade 0–1). The mean number of γ-H2AX foci after 5 clinical fractions was significantly higher than that before RT, especially in clinically radiosensitive patients. Conclusions The γ-H2AX assay may have potential for screening individual radiosensitivity of breast cancer patients. KW - DNA damage KW - DNA repair KW - Peripheral blood lymphocytes KW - Radiosensitivity KW - DNS-Schädigung KW - DNS-Reparatur Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96110 UR - http://www.ro-journal.com/content/8/1/98 ER - TY - JOUR A1 - Elias, Johannes A1 - Heuschmann, Peter U. A1 - Schmitt, Corinna A1 - Eckhardt, Frithjof A1 - Boehm, Hartmut A1 - Maier, Sebastian A1 - Kolb-Mäurer, Annette A1 - Riedmiller, Hubertus A1 - Müllges, Wolfgang A1 - Weisser, Christoph A1 - Wunder, Christian A1 - Frosch, Matthias A1 - Vogel, Ulrich T1 - Prevalence dependent calibration of a predictive model for nasal carriage of methicillin-resistant Staphylococcus aureus JF - BMC Infectious Diseases N2 - Background Published models predicting nasal colonization with Methicillin-resistant Staphylococcus aureus among hospital admissions predominantly focus on separation of carriers from non-carriers and are frequently evaluated using measures of discrimination. In contrast, accurate estimation of carriage probability, which may inform decisions regarding treatment and infection control, is rarely assessed. Furthermore, no published models adjust for MRSA prevalence. Methods Using logistic regression, a scoring system (values from 0 to 200) predicting nasal carriage of MRSA was created using a derivation cohort of 3091 individuals admitted to a European tertiary referral center between July 2007 and March 2008. The expected positive predictive value of a rapid diagnostic test (GeneOhm, Becton & Dickinson Co.) was modeled using non-linear regression according to score. Models were validated on a second cohort from the same hospital consisting of 2043 patients admitted between August 2008 and January 2012. Our suggested correction score for prevalence was proportional to the log-transformed odds ratio between cohorts. Calibration before and after correction, i.e. accurate classification into arbitrary strata, was assessed with the Hosmer-Lemeshow-Test. Results Treating culture as reference, the rapid diagnostic test had positive predictive values of 64.8% and 54.0% in derivation and internal validation corhorts with prevalences of 2.3% and 1.7%, respectively. In addition to low prevalence, low positive predictive values were due to high proportion (> 66%) of mecA-negative Staphylococcus aureus among false positive results. Age, nursing home residence, admission through the medical emergency department, and ICD-10-GM admission diagnoses starting with “A” or “J” were associated with MRSA carriage and were thus included in the scoring system, which showed good calibration in predicting probability of carriage and the rapid diagnostic test’s expected positive predictive value. Calibration for both probability of carriage and expected positive predictive value in the internal validation cohort was improved by applying the correction score. Conclusions Given a set of patient parameters, the presented models accurately predict a) probability of nasal carriage of MRSA and b) a rapid diagnostic test’s expected positive predictive value. While the former can inform decisions regarding empiric antibiotic treatment and infection control, the latter can influence choice of screening method. KW - Methicillin-resistant staphylococcus aureus KW - Infection control KW - Clinical prediction rule KW - Predictive value of tests KW - False positive reactions KW - Calibration Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96091 UR - http://www.biomedcentral.com/1471-2334/13/111 ER - TY - JOUR A1 - Bodem, Jochen A1 - Schrom, Eva-Maria A1 - Moschall, Rebecca A1 - Hartl, Maximilian J. A1 - Weitner, Helena A1 - Fecher, David A1 - Langemeier, Jörg A1 - Wöhrl, Brigitta M. T1 - U1snRNP-mediated suppression of polyadenylation in conjunction with the RNA structure controls poly (A) site selection in foamy viruses JF - Retrovirology N2 - Background During reverse transcription, retroviruses duplicate the long terminal repeats (LTRs). These identical LTRs carry both promoter regions and functional polyadenylation sites. To express full-length transcripts, retroviruses have to suppress polyadenylation in the 5′LTR and activate polyadenylation in the 3′LTR. Foamy viruses have a unique LTR structure with respect to the location of the major splice donor (MSD), which is located upstream of the polyadenylation signal. Results Here, we describe the mechanisms of foamy viruses regulating polyadenylation. We show that binding of the U1 small nuclear ribonucleoprotein (U1snRNP) to the MSD suppresses polyadenylation at the 5′LTR. In contrast, polyadenylation at the 3′LTR is achieved by adoption of a different RNA structure at the MSD region, which blocks U1snRNP binding and furthers RNA cleavage and subsequent polyadenylation. Conclusion Recently, it was shown that U1snRNP is able to suppress the usage of intronic cryptic polyadenylation sites in the cellular genome. Foamy viruses take advantage of this surveillance mechanism to suppress premature polyadenylation at the 5’end of their RNA. At the 3’end, Foamy viruses use a secondary structure to presumably block access of U1snRNP and thereby activate polyadenylation at the end of the genome. Our data reveal a contribution of U1snRNP to cellular polyadenylation site selection and to the regulation of gene expression. KW - Polyadenylation KW - foamy virus KW - RNA structure KW - Major splice donor KW - Polyadenylierung KW - RNS Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96085 UR - http://www.retrovirology.com/content/10/1/55 ER - TY - JOUR A1 - Buchberger, Alexander A1 - Böhm, Stephanie T1 - The Budding Yeast Cdc48Shp1 Complex Promotes Cell Cycle Progression by Positive Regulation of Protein Phosphatase 1 (Glc7) JF - PLoS One N2 - The conserved, ubiquitin-selective AAA ATPase Cdc48 regulates numerous cellular processes including protein quality control, DNA repair and the cell cycle. Cdc48 function is tightly controlled by a multitude of cofactors mediating substrate specificity and processing. The UBX domain protein Shp1 is a bona fide substrate-recruiting cofactor of Cdc48 in the budding yeast S. cerevisiae. Even though Shp1 has been proposed to be a positive regulator of Glc7, the catalytic subunit of protein phosphatase 1 in S. cerevisiae, its cellular functions in complex with Cdc48 remain largely unknown. Here we show that deletion of the SHP1 gene results in severe growth defects and a cell cycle delay at the metaphase to anaphase transition caused by reduced Glc7 activity. Using an engineered Cdc48 binding-deficient variant of Shp1, we establish the Cdc48Shp1 complex as a critical regulator of mitotic Glc7 activity. We demonstrate that shp1 mutants possess a perturbed balance of Glc7 phosphatase and Ipl1 (Aurora B) kinase activities and show that hyper-phosphorylation of the kinetochore protein Dam1, a key mitotic substrate of Glc7 and Ipl1, is a critical defect in shp1. We also show for the first time a physical interaction between Glc7 and Shp1 in vivo. Whereas loss of Shp1 does not significantly affect Glc7 protein levels or localization, it causes reduced binding of the activator protein Glc8 to Glc7. Our data suggest that the Cdc48Shp1 complex controls Glc7 activity by regulating its interaction with Glc8 and possibly further regulatory subunits. KW - alleles KW - cell cycle KW - immunoprecipitation KW - phosphatases KW - genetic interactions Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96073 ER - TY - JOUR A1 - Szalay, Aladar A A1 - Weibel, Stephanie A1 - Hofmann, Elisabeth A1 - Basse-Luesebrink, Thomas Christian A1 - Donat, Ulrike A1 - Seubert, Carolin A1 - Adelfinger, Marion A1 - Gnamlin, Prisca A1 - Kober, Christina A1 - Frentzen, Alexa A1 - Gentschev, Ivaylo A1 - Jakob, Peter Michael T1 - Treatment of malignant effusion by oncolytic virotherapy in an experimental subcutaneous xenograft model of lung cancer JF - Journal of Translational Medicine N2 - Background Malignant pleural effusion (MPE) is associated with advanced stages of lung cancer and is mainly dependent on invasion of the pleura and expression of vascular endothelial growth factor (VEGF) by cancer cells. As MPE indicates an incurable disease with limited palliative treatment options and poor outcome, there is an urgent need for new and efficient treatment options. Methods In this study, we used subcutaneously generated PC14PE6 lung adenocarcinoma xenografts in athymic mice that developed subcutaneous malignant effusions (ME) which mimic pleural effusions of the orthotopic model. Using this approach monitoring of therapeutic intervention was facilitated by direct observation of subcutaneous ME formation without the need of sacrificing mice or special imaging equipment as in case of MPE. Further, we tested oncolytic virotherapy using Vaccinia virus as a novel treatment modality against ME in this subcutaneous PC14PE6 xenograft model of advanced lung adenocarcinoma. Results We demonstrated significant therapeutic efficacy of Vaccinia virus treatment of both advanced lung adenocarcinoma and tumor-associated ME. We attribute the efficacy to the virus-mediated reduction of tumor cell-derived VEGF levels in tumors, decreased invasion of tumor cells into the peritumoral tissue, and to viral infection of the blood vessel-invading tumor cells. Moreover, we showed that the use of oncolytic Vaccinia virus encoding for a single-chain antibody (scAb) against VEGF (GLAF-1) significantly enhanced mono-therapy of oncolytic treatment. Conclusions Here, we demonstrate for the first time that oncolytic virotherapy using tumor-specific Vaccinia virus represents a novel and promising treatment modality for therapy of ME associated with advanced lung cancer. KW - Oncolytic virotherapy KW - Malignant effusion KW - Lung cancer KW - VEGF KW - Lungenkrebs KW - Vascular endothelial Growth Factor Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96016 UR - http://www.translational-medicine.com/content/11/1/106 ER - TY - JOUR A1 - Haring, Bernhard A1 - Pettinger, Mary A1 - Bea, Jennifer W. A1 - Wactawski-Wende, Jean A1 - Carnahan, Ryan M. A1 - Ockene, Judith K. A1 - Wyler von Ballmoos, Moritz A1 - Wallace, Robert B. A1 - Wassertheil-Smoller, Sylvia T1 - Laxative use and incident falls, fractures and change in bone mineral density in postmenopausal women: results from the Women’s Health Initiative JF - BMC Geriatrics N2 - Background Laxatives are among the most widely used over-the-counter medications in the United States but studies examining their potential hazardous side effects are sparse. Associations between laxative use and risk for fractures and change in bone mineral density [BMD] have not previously been investigated. Methods This prospective analysis included 161,808 postmenopausal women (8907 users and 151,497 nonusers of laxatives) enrolled in the WHI Observational Study and Clinical Trials. Women were recruited from October 1, 1993, to December 31, 1998, at 40 clinical centers in the United States and were eligible if they were 50 to 79 years old and were postmenopausal at the time of enrollment. Medication inventories were obtained during in-person interviews at baseline and at the 3-year follow-up visit on everyone. Data on self-reported falls (≥2), fractures (hip and total fractures) were used. BMD was determined at baseline and year 3 at 3 of the 40 clinical centers of the WHI. Results Age-adjusted rates of hip fractures and total fractures, but not for falls were similar between laxative users and non-users regardless of duration of laxative use. The multivariate-adjusted hazard ratios for any laxative use were 1.06 (95% confidence interval [CI], 1.03-1.10) for falls, 1.02 (95% CI, 0.85-1.22) for hip fractures and 1.01 (95% CI, 0.96-1.07) for total fractures. The BMD levels did not statistically differ between laxative users and nonusers at any skeletal site after 3-years intake. Conclusion These findings support a modest association between laxative use and increase in the risk of falls but not for fractures. Its use did not decrease bone mineral density levels in postmenopausal women. Maintaining physical functioning, and providing adequate treatment of comorbidities that predispose individuals for falls should be considered as first measures to avoid potential negative consequences associated with laxative use. KW - laxative KW - use KW - fall KW - fracture KW - bone mineral density KW - aging Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-95960 UR - http://www.biomedcentral.com/1471-2318/13/38 ER - TY - JOUR A1 - Elias, Johannes A1 - Findlow, Jamie A1 - Borrow, Ray A1 - Tremmel, Angelika A1 - Frosch, Matthias A1 - Vogel, Ulrich T1 - Persistence of antibodies in laboratory staff immunized with quadrivalent meningococcal polysaccharide vaccine JF - Journal of Occupational Medicine and Toxicology N2 - Background Occupational exposure to live meningococci can potentially cause invasive meningococcal disease in laboratory staff. While, until recently, immunization with quadrivalent polysaccharide vaccine represented one cornerstone of protection, data on long-term persistence of antibodies in adults remain scarce. Methods We analyzed the relationship of antibody levels and time following quadrivalent polysaccharide vaccination (Mencevax® ACWY, GlaxoSmithKline) in a cross-sectional sample of 20 laboratory workers vaccinated at ages between 16.4 to 40.7 years from Germany. Sera were obtained 0.4 to 158.5 (median 35.3) months after vaccination. At the time of sampling, laboratory workers had been regularly exposed to meningococci for periods between 3.2 to 163.8 (median 41.2) months. Serum bactericidal assay (SBA) with rabbit complement and a microsphere-based flow analysis method were used to determine bactericidal titers and concentrations of IgG, respectively, against serogroups A, C, W135, and Y. Decay of antibodies was modeled using linear regression. Protective levels were defined as SBA titers ≥ 8. Results Half-lives of SBA titers against serogroups A, C, W135, and Y were estimated at 27.4, 21.9, 18.8, and 28.0 months, respectively. Average durations of protection were estimated at 183.9, 182.0, 114.6, and 216.4 months, respectively. Inter-individual variation was high; using lower margins of 95% prediction intervals, minimal durations of protection against serogroups A, C, W135 and Y were estimated at 33.5, 24.6, 0.0, and 55.1 months, respectively. The proportion of staff with protective SBA titers against W135 (65.0%) was significantly lower than proportions protected against A (95.0%), C (94.7%), and Y (95.0%). Consistently, geometric mean titer (97.0) and geometric mean concentration of IgG (2.1 μg/ml) was lowest against serogroup W135. SBA titers in a subset of individuals with incomplete protection rose to ≥ 128 (≥ 8 fold) after reimmunization with a quadrivalent glycoconjugate vaccine. Conclusions The average duration of protection following immunization with a quadrivalent polysaccharide vaccine in adults was ≥ 115 months regardless of serogroup. A substantial proportion (approximately 23% according to our decay model) of adult vaccinees may not retain protection against serogroup W135 for five years, the time suggested for reimmunization. KW - Vaccination KW - Meningococcal infection KW - Biohazard KW - Meningococcal polysaccharide caccine Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-95953 UR - http://www.occup-med.com/content/8/1/4 ER - TY - JOUR A1 - Matlach, Juliane A1 - Freiberg, Florentina Joyce A1 - Leippi, Swetlana A1 - Grehn, Franz A1 - Klink, Thomas T1 - Comparison of phacotrabeculectomy versus phacocanaloplasty in the treatment of patients with concomitant cataract and glaucoma JF - BMC Ophthalmology N2 - Background Cataract and glaucoma are both common comorbidities among older patients. Combining glaucoma surgery with minimal invasive phacoemulsification (phaco) is a considerable option to treat both conditions at the same time, although the combination with filtration surgery can produce a strong inflammatory response. Combined non-penetrating procedures like canaloplasty have shown to reduce intraocular pressure (IOP) comparable to trabeculectomy without the risk of serious bleb-related complications. The purpose of this retrospective study was to compare the outcomes of phacotrabeculectomy and phacocanaloplasty. Methods Thirty-nine eyes with concomitant cataract and glaucoma who underwent phacotrabeculectomy (n = 20; 51.3%) or phacocanaloplasty (n = 19; 48.7%) were included into this trial on reduction of IOP, use of medication, success rate, incidence of complications and postsurgical interventions. Complete success was defined as IOP reduction by 30% or more and to 21 mmHg or less (definition 1a) or IOP to less than 18 mmHg (definition 2a) without glaucoma medication. Results Over a 12-month follow-up, baseline IOP significantly decreased from 30.0 ± 5.3 mmHg with a mean of 2.5 ± 1.2 glaucoma medications to 11.7 ± 3.5 mmHg with a mean of 0.2 ± 0.4 medications in eyes with phacotrabeculectomy (P < .0001). Eyes with phacocanaloplasty had a preoperative IOP of 28.3 ± 4.1 mmHg and were on 2.8 ± 1.1 IOP-lowering drugs. At 12 months, IOP significantly decreased to 12.6 ± 2.1 mmHg and less glaucoma medications were necessary (mean 1.0 ± 1.5 topical medications; P < .05). 15 patients (78.9%) with phacotrabeculectomy and 9 patients (60.0%) in the phacocanaloplasty group showed complete success according to definition 1 and 2 after 1 year (P = .276). Postsurgical complications were seen in 7 patients (36.8%) of the phacocanaloplasty group which included intraoperative macroperforation of the trabeculo-Descemet membrane (5.3%), hyphema (21.1%) and bleb formation (10.5%). Although more complications were observed in the phacotrabeculectomy group, no statistically significant difference was found. Conclusions Phacocanaloplasty offers a new alternative to phacotrabeculectomy for treatment of concomitant glaucoma and cataract, although phacotrabeculectomy yielded in better results in terms of IOP maintained without glaucoma medications. KW - Non-penetrating glaucoma surgery KW - Phacotrabeculectomy KW - Phacocanaloplasty KW - Canaloplasty KW - Trabeculectomy KW - Augenkrankheit Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-95948 UR - http://www.biomedcentral.com/1471-2415/13/1 ER - TY - JOUR A1 - Pahl, Mario A1 - Si, Aung A1 - Zhang, Shaowu T1 - Numerical cognition in bees and other insects JF - Frontiers in Comparative Psychology N2 - The ability to perceive the number of objects has been known to exist in vertebrates for a few decades, but recent behavioral investigations have demonstrated that several invertebrate species can also be placed on the continuum of numerical abilities shared with birds, mammals, and reptiles. In this review article, we present the main experimental studies that have examined the ability of insects to use numerical information. These studies have made use of a wide range of methodologies, and for this reason it is striking that a common finding is the inability of the tested animals to discriminate numerical quantities greater than four. Furthermore, the finding that bees can not only transfer learnt numerical discrimination to novel objects, but also to novel numerosities, is strongly suggestive of a true, albeit limited, ability to count. Later in the review, we evaluate the available evidence to narrow down the possible mechanisms that the animals might be using to solve the number-based experimental tasks presented to them. We conclude by suggesting avenues of further research that take into account variables such as the animals’ age and experience, as well as complementary cognitive systems such as attention and the time sense. KW - bee KW - insect KW - counting KW - learning KW - memory KW - Biene KW - numerical cognition KW - quantity discrimination Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-95935 UR - http://journal.frontiersin.org/Journal/10.3389/fpsyg.2013.00162/full ER - TY - JOUR A1 - Busch, Albert A1 - Lorenz, Udo A1 - Tiurbe, George Christian A1 - Bühler, Christoph A1 - Kellersmann, Richard T1 - Femoral vein obturator bypass revascularization in groin infectious bleeding: two case reports and review of the literature JF - Journal of Medical Case Reports N2 - Introduction Groin infections resulting in arterial bleeding due to bacterial vessel destruction are a severe challenge in vascular surgery. Patients with them most often present as emergencies and therefore need individualized reconstruction solutions. Case presentation Case 1 is a 67-year-old man with infectious bleeding after an autologous reconstruction of the femoral bifurcation with greater saphenous vein due to infection of a bovine pericard patch after thrombendarterectomy. Case 2 is a 35-year-old male drug addict and had severe femoral bleeding and infection after repeated intravenous and intra-arterial substance abuse. Both patients were treated with an autologous obturator bypass of the superficial femoral vein. We review the current literature and highlight our therapeutic concept of this clinical entity. Conclusions Treatment should include systemic antibiotic medication, surgical control of the infectious site, revascularization and soft tissue repair. An extra-anatomical obturator bypass with autologous superficial femoral vein should be considered as the safest revascularization procedure in infections caused by highly pathogenic bacteria. KW - Obturator bypass KW - Groin infection KW - Autologous KW - Extra-anatomical KW - Femoral vein Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-95901 UR - http://www.jmedicalcasereports.com/content/7/1/75 ER - TY - JOUR A1 - Dandekar, Thomas A1 - Ahmed, Zeeshan A1 - Saman, Zeeshan A1 - Huber, Claudia A1 - Hensel, Michael A1 - Schomburg, Dietmar A1 - Münch, Richard A1 - Eisenreich, Wolfgang T1 - Software LS-MIDA for efficient mass isotopomer distribution analysis in metabolic modelling JF - BMC Bioinformatics N2 - Background The knowledge of metabolic pathways and fluxes is important to understand the adaptation of organisms to their biotic and abiotic environment. The specific distribution of stable isotope labelled precursors into metabolic products can be taken as fingerprints of the metabolic events and dynamics through the metabolic networks. An open-source software is required that easily and rapidly calculates from mass spectra of labelled metabolites, derivatives and their fragments global isotope excess and isotopomer distribution. Results The open-source software “Least Square Mass Isotopomer Analyzer” (LS-MIDA) is presented that processes experimental mass spectrometry (MS) data on the basis of metabolite information such as the number of atoms in the compound, mass to charge ratio (m/e or m/z) values of the compounds and fragments under study, and the experimental relative MS intensities reflecting the enrichments of isotopomers in 13C- or 15 N-labelled compounds, in comparison to the natural abundances in the unlabelled molecules. The software uses Brauman’s least square method of linear regression. As a result, global isotope enrichments of the metabolite or fragment under study and the molar abundances of each isotopomer are obtained and displayed. Conclusions The new software provides an open-source platform that easily and rapidly converts experimental MS patterns of labelled metabolites into isotopomer enrichments that are the basis for subsequent observation-driven analysis of pathways and fluxes, as well as for model-driven metabolic flux calculations. KW - LS-MIDA Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-95882 UR - http://www.biomedcentral.com/1471-2105/14/218 ER - TY - JOUR A1 - Holzapfel, Boris Michael A1 - Prodinger, Peter M. A1 - Pilge, Hakan A1 - Banke, Ingo J. A1 - Bürklein, Dominik A1 - Miethke, Thomas A1 - Gradinger, Reiner T1 - Acute Osteomyelitis of the Humerus mimicking Malignancy: Streptococcus pneumoniae as Exceptional Pathogen in an Immunocompetent Adult JF - BMC Infectious Diseases N2 - Background Chronic osteomyelitis due to direct bone trauma or vascular insufficiency is a frequent problem in orthopaedic surgery. In contrast, acute haematogenous osteomyelitis represents a rare entity that almost exclusively affects prepubescent children or immunodeficient adults. Case Presentation In this article, we report the case of acute pneumococcal osteomyelitis of the humerus in an immunocompetent and otherwise healthy 44-year-old male patient presenting with minor inflammation signs and misleading clinical features. Conclusions The diagnosis had to be confirmed by open biopsy which allowed the initiation of a targeted therapy. A case of pneumococcal osteomyelitis of a long bone, lacking predisposing factors or trauma, is unique in adults and has not been reported previously. KW - Acute osteomyelitis KW - Haematogenous KW - Long bones KW - Immunodeficiency KW - Osteomyelitis of the humerus Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-95790 ER - TY - JOUR A1 - Schupp, Nicole A1 - Ali, Badreldin H. A1 - Beegam, Sumyia A1 - Al-Husseni, Isehaq A1 - Al-Shukaili, Ahmed A1 - Nemmar, Abderrahim A1 - Schierling, Simone A1 - Queisser, Nina T1 - Effect of gum arabic on oxidative stress and inflammation in adenine-induced chronic renal failure in rats JF - PLoS One N2 - Inflammation and oxidative stress are known to be involved in the pathogenesis of chronic kidney disease in humans, and in chronic renal failure (CRF) in rats. The aim of this work was to study the role of inflammation and oxidative stress in adenine-induced CRF and the effect thereon of the purported nephroprotective agent gum arabic (GA). Rats were divided into four groups and treated for 4 weeks as follows: control, adenine in feed (0.75%, w/w), GA in drinking water (15%, w/v) and adenine+GA, as before. Urine, blood and kidneys were collected from the rats at the end of the treatment for analysis of conventional renal function tests (plasma creatinine and urea concentration). In addition, the concentrations of the pro-inflammatory cytokine TNF-a and the oxidative stress markers glutathione and superoxide dismutase, renal apoptosis, superoxide formation and DNA double strand break frequency, detected by immunohistochemistry for c-H2AX, were measured. Adenine significantly increased the concentrations of urea and creatinine in plasma, significantly decreased the creatinine clearance and induced significant increases in the concentration of the measured inflammatory mediators. Further, it caused oxidative stress and DNA damage. Treatment with GA significantly ameliorated these actions. The mechanism of the reported salutary effect of GA in adenine-induced CRF is associated with mitigation of the adenine-induced inflammation and generation of free radicals. KW - adenine KW - blood plasma KW - creatinine KW - inflammation KW - inflammatory diseases KW - Kidneys KW - Oxidative stress KW - Water resources Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-95787 ER - TY - THES A1 - Tupak, Sara T1 - Modulators of Prefrontal Fear Network Function: An Integrative View T1 - Modulatoren präfrontaler Furchtnetzwerkfunktion: Ein integrativer Ansatz N2 - Regulating our immediate feelings, needs, and urges is a task that we are faced with every day in our lives. The effective regulation of our emotions enables us to adapt to society, to deal with our environment, and to achieve long‐term goals. Deficient emotion regulation, in contrast, is a common characteristic of many psychiatric and neurological conditions. Particularly anxiety disorders and subclinical states of increased anxiety are characterized by a range of behavioral, autonomic, and neural alterations impeding the efficient down‐regulation of acute fear. Established fear network models propose a downstream prefrontal‐amygdala circuit for the control of fear reactions but recent research has shown that there are a range of factors acting on this network. The specific prefrontal cortical networks involved in effective regulation and potential mediators and modulators are still a subject of ongoing research in both the animal and human model. The present research focused on the particular role of different prefrontal cortical regions during the processing of fear‐relevant stimuli in healthy subjects. It is based on four studies, three of them investigating a different potential modulator of prefrontal top‐down function and one directly challenging prefrontal regulatory processes. Summarizing the results of all four studies, it was shown that prefrontal functioning is linked to individual differences in state anxiety, autonomic flexibility, and genetic predisposition. The T risk allele of the neuropeptide S receptor gene, a recently suggested candidate gene for pathologically elevated anxiety, for instance, was associated with decreased prefrontal cortex activation to particularly fear‐relevant stimuli. Furthermore, the way of processing has been found to crucially determine if regulatory processes are engaged at all and it was shown that anxious individuals display generally reduced prefrontal activation but may engage in regulatory processes earlier than non‐anxious subjects. However, active manipulation of prefrontal functioning in healthy subjects did not lead to the typical behavioral and neural patterns observed in anxiety disorder patients suggesting that other subcortical or prefrontal structures can compensate for an activation loss in one specific region. Taken together, the current studies support prevailing theories of the central role of the prefrontal cortex for regulatory processes in response to fear‐eliciting stimuli but point out that there are a range of both individual differences and peculiarities in experimental design that impact on or may even mask potential effects in neuroimaging research on fear regulation. N2 - Tagtäglich sind wir gefordert, die Kontrolle über unsere unmittelbaren Gefühle und Bedürfnisse zu bewahren und diese zu regulieren. Die effektive Kontrolle unserer Emotionen ermöglicht es uns, uns unserer Umgebung und Gesellschaft anzupassen und langfristige Ziele zu erreichen. Defizitäre Emotionsregulation, im Gegensatz, charakterisiert eine Reihe von psychiatrischen und neurologischen Erkrankungen. Vor allem Angststörungen und subklinisch erhöhte Ängstlichkeit zeichnen sich durch eine Reihe von behavioralen, vegetativen und neuronalen Abweichungen aus, welche sich störend auf die effiziente Furchtregulation auswirken. Gängige Modelle des Furchtnetzwerks gehen davon aus, dass Furchtreaktionen durch eine top‐down Verschaltung von Präfrontalkortex und Amygdala reguliert werden. Neure Studien jedoch haben gezeigt, dass dieses Netzwerk durch eine Reihe von Faktoren beeinflusst wird. Die spezifischen präfrontalen kortikalen Netzwerke, die an einer effektiven Regulation beteiligt sind und deren potentielle Mediatoren und Modulatoren sind jedoch noch immer Gegenstand heutiger Forschung, sowohl im Tier‐, als auch im Menschenmodell. Der Fokus der vorliegenden Arbeit richtete sich speziell auf die Rolle verschiedener Regionen des Präfrontalkortex während der Verarbeitung furchtrelevanter Reize bei gesunden Probanden. Die Arbeit basiert auf vier Studien, von denen drei jeweils einen potentiellen Modulator präfrontaler top-down Funktion näher untersuchten, während jene regulatorischen Prozesse in einer weiteren Studie gezielt manipuliert wurden. Zusammenfassend konnte gezeigt werden, dass die Präfrontalfunktion mit individuellen Unterschieden in Ängstlichkeit, vegetativer Flexibilität und genetischer Prädisposition assoziiert ist. So wurde beispielsweise das T Risikoallel des Neuropeptid S Rezeptor Gens, ein erst kürzlich entdecktes Kandidatengen für pathologisch erhöhte Ängstlichkeit, speziell während der Darbietung furchtrelevanter Reize mit geringerer Präfrontalkortex Aktivierung in Verbindung gebracht. Des Weiteren konnte gezeigt werden, dass die Art der Verarbeitung im Wesentlichen bestimmt, ob überhaupt regulatorische Vorgänge in Gang gesetzt werden und dass insbesondere ängstliche Probanden eine allgemein verminderte präfrontale Aktivierung zeigen. Die Ergebnisse deuten jedoch auch darauf hin, dass diese regulatorischen Prozesse bei Ängstlichen möglicherweise früher aktiviert werden als bei weniger Ängstlichen. Das aktive Eingreifen in die Präfrontalfunktion bei Gesunden führte jedoch nicht zu den typischen neuronalen und Verhaltensmustern, wie sie bei Patienten mit Angststörungen beobachtet werden, was wiederum die Annahme nahe legt, dass andere subkortikale oder präfrontale Strukturen für eine Aktivitätsverringerung in einer bestimmten Region kompensieren können. Zusammenfassend kann gesagt werden, dass die vorliegenden Ergebnisse aktuelle Theorien einer zentralen Rolle des Präfrontalkortex in Bezug auf regulatorische Prozesse während der Konfrontation mit furchtrelevanten Reizen untermauern, jedoch auch zeigen, dass es eine Reihe an individuellen Charakteristika und Feinheiten im jeweiligen experimentellen Design gibt, die potentielle Effekte in Bildgebungsstudien zur Furchtregulation beeinflussen oder sogar maskieren können. KW - Neurogenetik KW - NIR-Spektroskopie KW - Furcht KW - Herzfrequenzvariabilität KW - ranskranielle magnetische Stimulation KW - Emotionsregulation KW - Präfrontaler Cortex KW - Theta Burst Stimulation KW - Neuropeptid S Rezeptor Gen KW - emotionale Interferenz KW - emotion regulation KW - prefrontal cortex KW - theta burst stimulation KW - neuropeptide S receptor gene KW - emotional interference KW - Angst KW - Neurowissenschaften Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-85673 ER - TY - THES A1 - Krauß, Martin Bernhard T1 - Testing Models with Higher Dimensional Effective Interactions at the LHC and Dark Matter Experiments T1 - Tests von Modellen mit höherdimensionalen effektiven Operatoren am LHC und Experimenten zur Suche dunkler Materie N2 - Dark matter and non-zero neutrino masses are possible hints for new physics beyond the Standard Model of particle physics. Such potential consequences of new physics can be described by effective field theories in a model independent way. It is possible that the dominant contribution to low-energy effects of new physics is generated by operators of dimension d>5, e.g., due to an additional symmetry. Since these are more suppressed than the usually discussed lower dimensional operators, they can lead to extremly weak interactions even if new physics appears at comparatively low scales. Thus neutrino mass models can be connected to TeV scale physics, for instance. The possible existence of TeV scale particles is interesting, since they can be potentially observed at collider experiments, such as the Large Hadron Collider. Hence, we first recapitulate the generation of neutrino masses by higher dimensional effective operators in a supersymmetric framework. In addition, we discuss processes that can be used to test these models at the Large Hadron Collider. The introduction of new particles can affect the running of gauge couplings. Hence, we study the compatibilty of these models with Grand Unified Theories. The required extension of these models can imply the existence of new heavy quarks, which requires the consideration of cosmological constraints. Finally, higher dimensional effective operators can not only generate small neutrino masses. They also can be used to discuss the interactions relevant for dark matter detection experiments. Thus we apply the methods established for the study of neutrino mass models to the systematic discussion of higher dimensional effective operators generating dark matter interactions. N2 - Dunkle Materie und nichtverschwindende Neutrinomassen sind nur zwei Hinweise auf das mögliche Vorhandensein neuer Physik jenseits des Standardmodells der Teilchenphysik. Solche möglichen Konsequenzen neuer Physik können modellunabhängig mit effektiven Feldtheorien beschrieben werden. Beispielsweise aufgrund zusätzlicher Symmetrien ist es möglich, dass Operatoren mit Dimension $d>5$ den dominanten Beitrag zu den Effekten neuer Physik bei niedrigen Energieskalen liefern. Da diese stärker unterdrückt sind als die gewöhnlicherweise betrachteten Operatoren niedrigerer Dimension, können sie zu äußerst schwachen Wechselwirkungen führen, selbst wenn neue Physik bereits bei vergleichsweise niedrigen Energien auftritt. Dies ermöglicht unter anderem neue Teilchen mit Massen im Bereich der TeV-Skala mit der Erzeugung der sehr geringen Neutrinomassen in Verbindung zu bringen. Solche Teilchen sind besonders interessant, da sie an Beschleunigerexperimenten wie dem Large Hadron Collider untersucht werden können. Deswegen wird in dieser Arbeit zunächst die Erzeugung von Neutrinomassen durch höherdimensionale effektive Operatoren in supersymmetrischen Modellen rekapituliert. Darüber hinaus sollen mögliche Prozesse zum Nachweis dieser Modelle am Large Hadron Collider anhand eines Beispiels diskutiert werden. Da das Einführen neuer Teilchen das Laufen der Kopplungskonstanten beeinflussen kann, wird ferner betrachtet, inwiefern solche Szenarien vereinbar mit großen vereinheitlichten Theorien (Grand Unified Theories) sind. Die entsprechende Erweiterung dieser Modelle kann beispielsweise das Auftreten neuer schwerer Quarks zur Folge haben, die auf ihre Vereinbarkeit mit kosmologischen Beobachtungen untersucht werden. Höherdimensionale Operatoren können jedoch nicht nur sehr kleine Neutrinomassen erzeugen, sondern auch für Experimente zum Nachweis dunkler Materie relevant sein. Daher sollen die zuvor angewandten Methoden zur systematischen Diskussion effektiver Operatoren, die Wechselwirkungen dunkler Materie beschreiben, verwendet werden. KW - Neutrino KW - Supersymmetrie KW - Dunkle Materie KW - Effektive Theorie KW - Theoretische Teilchenphysik KW - Theoretical High Energy Physics KW - Neutrino Physics KW - Neutrinophysik KW - Supersymmetry KW - Supersymmetrie KW - Dark Matter KW - Dunkle Materie KW - Effective Field Theory KW - Effektive Feldtheorien KW - Elementarteilchenphysik Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-94519 ER - TY - THES A1 - Joseph, Arun Antony T1 - Real-time MRI of Moving Spins Using Undersampled Radial FLASH T1 - Echtzeit MRI von bewegten Spins mithilfe der unterabgetasteten radialen FLASH sequenz N2 - Nuclear spins in motion is an intrinsic component of any dynamic process when studied using magnetic resonance imaging (MRI). Moving spins define many functional characteristics of the human body such as diffusion, perfusion and blood flow. Quantitative MRI of moving spins can provide valuable information about the human physiology or of a technical system. In particular, phase-contrast MRI, which is based on two images with and without a flow-encoding gradient, has emerged as an important diagnostic tool in medicine to quantify human blood flow. Unfortunately, however, its clinical usage is hampered by long acquisition times which only provide mean data averaged across multiple cardiac cycles and therefore preclude Monitoring the immediate physiological responses to stress or exercise. These limitations are expected to be overcome by real-time imaging which constitutes a primary aim of this thesis. Short image acquisition times, as the core for real-time phase-contrast MRI, can be mainly realized through undersampling of the acquired data. Therefore the development focused on related technical aspects such as pulse sequence design, k-space encoding schemes and image reconstruction. A radial encoding scheme was experimentally found to be robust to motion and less sensitive to undersampling than Cartesian encoding. Radial encoding was combined with a FLASH acquisition technique for building an efficient real-time phase-contrast MRI sequence. The sequence was further optimized through overlapping of gradients to achieve the shortest possible echo time. Regularized nonlinear inverse reconstruction (NLINV), a technique which jointly estimates the image content and its corresponding coil sensitivities, was used for image reconstruction. NLINV was adapted specifically for phase-contrast MRI to produce both Magnitude images and phase-contrast maps. Real-time phase-contrast MRI therefore combined two highly undersampled (up to a factor of 30) radial gradient-echo acquisitions with and without a flow-encoding gradient with modified NLINV reconstructions. The developed method achieved real-time phase-contrast MRI at both high spatial (1.3 mm) and temporal resolution (40 ms). Applications to healthy human subjects as well as preliminary studies of patients demonstrated real-time phase-contrast MRI to offer improved patient compliance (e.g., free breathing) and immediate access to physiological variations of flow parameters (e.g., response to enhanced intrathoracic pressure). In most cases, quantitative blood flow was measured in the ascending aorta as an important blood vessel of the cardiovascular circulation system commonly studied in the clinic. The performance of real-time phase-contrast MRI was validated in comparison to standard Cine phase-contrast MRI using studies of flow phantoms as well as under in vivo conditions. The evaluations confirmed good agreement for comparable results. As a further extension to real-time phase-contrast MRI, this thesis implemented and explored a dual-echo phase-contrast MRI method which employs two sequential gradient echoes with and without flow encoding. The introduction of a flow-encoding gradient in between the two echoes aids in the further reduction of acquisition time. Although this technique was efficient under in vitro conditions, in vivo studies showed the influence of additional motion-induced Phase contributions. Due to these additional temporal phase information, the approach showed Little promise for quantitative flow MRI. As a further method three-dimensional real-time phase-contrast MRI was developed in this thesis to visualize and quantify multi-directional flow at about twice the measuring time of the standard real-time MRI method, i.e. at about 100 ms temporal resolution. This was achieved through velocity mapping along all three physical gradient directions. Although the method is still too slow to adequately cover cardiovascular blood flow, the preliminary results were found to be promising for future applications in tissues and organ systems outside the heart. Finally, future developments are expected to benefit from the adaptation of model-based reconstruction techniques to real-time phase-contrast MRI. N2 - Die Bewegung der Kernspins ist eine wesentliche Eigenschaft von dynamischen Vorgängen, die mit Hilfe der Magnetresonanztomographie (MRT) untersucht werden. Bewegte oder fließende Spins charakterisieren viele Funktionen des menschlichen Körpers, wie z.B. die Gewebeperfusion und den Blutfluss in den Gefäßen. Die quantitative MRT von bewegten Spins kann daher wertvolle Informationen über die menschliche Physiologie oder auch über ein technisches System geben. Insbesondere die Phasenkontrast-MRT, die auf der Aufnahme von zwei Bildern mit und ohne flusskodierenden Gradienten basiert, hat sich als ein wichtiges diagnostisches Werkzeug in der Medizin entwickelt, um den Blutfluss funktionell zu quantifizieren. Die klinische Nutzung ist jedoch durch die langen Messzeiten eingeschränkt, da die Daten über mehrere Herzzyklen gemittelt werden müssen und damit die Untersuchung unmittelbarer physiologischer Reaktionen auf Stress und/oder Muskelbelastung ausgeschlossen ist. Ein primäres Ziel dieser Arbeit war es, diese Einschränkungen durch die Entwicklung einer MRT-Flussmessung in Echtzeit zu überwinden. Entscheidende Grundlage jeder Echtzeit-MRT sind kurze Aufnahmezeiten, die vor allem durch eine Reduktion der aufgenommenen Daten (Unterabtastung) realisiert werden. Daher konzentrierte sich die hier vorgestellte Entwicklung auf die damit verbundenen technischen Aspekte wie die MRT-Sequenz zur Datenaufnahme, das räumliche Kodierungsschema, und die Bildrekonstruktion. Experimentell erwies sich ein radiales Kodierungsschema als robust gegenüber Bewegungen und relativ unempfindlich gegenüber milder Unterabtastung. Dieses Kodierungsschema wurde mit der FLASH Aufnahmetechnik für eine effiziente Phasenkontrast-Sequenz in Echtzeit kombiniert. Zusätzlich wurde die Sequenz durch Überlappung von Gradienten hinsichtlich einer kurzen Echozeit optimiert. Für die Bildrekonstruktion wurde die regularisierte nichtlineare inverse Rekonstruktion (NLINV) verwendet, bei der die Bildinformation und die entsprechenden pulensensitivitäten gleichzeitig geschätzt werden. NLINV wurde speziell für die Phasenkontrast-MRT angepasst, um sowohl Betragsbilder als auch robuste Phasenkontrast-Karten mit hoher raumzeitlicher Genauigkeit zu berechnen. Das erarbeitete Verfahren der Phasenkontrast-MRT in Echtzeit kombiniert daher zwei stark unterabgetastete (bis zu einem Faktor von 30) und unterschiedlich flusskodierte, radiale Gradientenecho-Aufnahmen mit einer modifizierten NLINV Rekonstruktion. Mit dieser Methode wurde sowohl eine gute räumliche Auflösung (1.3 mm), als auch eine hohe zeitliche Auflösung (40 ms) erreicht. Bei Anwendungen an gesunden Probanden sowie vorläufigen Untersuchungen von Patienten konnte nachgewiesen werden, dass die Phasenkontrast-MRT in Echtzeit einen verbesserten Komfort für die Patienten (z.B. freie Atmung) und unmittelbaren Zugang zu physiologischen Veränderungen der Flussparameter bietet (z.B. Reaktion auf erhöhten Druck im Brustraum). In den meisten Fällen wurden quantitative Blutflussmessungen in der aufsteigenden Aorta, einem klinisch wichtigen Gefäß des Herz-Kreislauf-Systems, vorgenommen. Die Messungen mit der Phasenkontrast-MRT in Echtzeit wurden mit der EKG-getriggerten Cine Phasenkontrast-MRT (klinischer Standard) an einem Flussphantom und unter in vivo Bedingungen verglichen. Die Ergebnisse zeigten unter vergleichbaren Bedingungen gute Übereinstimmung. Im Rahmen dieser Arbeit wurde zusätzlich eine Doppelecho-Variante der Phasenkontrast-MRT in Echtzeit implementiert. Das Einfügen eines flusskodierenden Gradienten zwischen den beiden Echos führte zu einer weiteren Reduzierung der Messzeit. Obwohl sich diese Technik unter in vitro Bedingungen als tauglich erwies, zeigten sich bei in vivo Studien störende Einflüsse durch bewegungsinduzierte Phasenbeiträge, die wenig Erfolg für quantitative Flussmessungen versprechen. Als weitere Methode wurde in dieser Arbeit eine dreifach kodierte Sequenz zur Phasenkontrast-MRT entwickelt, um multidirektionalen Fluss zu untersuchen. Die Geschwindigkeitskodierung entlang aller drei physikalischen Gradientenrichtungen führte zu einer verlängerten Messzeit (zeitliche Auflösung � 100 ms) gegenüber der Echtzeit-Flussmessung in nur einer Richtung. Obwohl das Verfahren noch zu langsam ist, um den kardiovaskulären Blutfluss adäquat zu beschreiben, waren vorläufige Ergebnisse in Körperregionen außerhalb des Herzens für zukünftige klinische Anwendungen sehr vielversprechend. Es ist zu erwarten, dass entsprechende Weiterentwicklungen von modellbasierten ekonstruktionsverfahren profitieren werden. KW - Kernspintomografie KW - Real-time MRI Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-94000 ER - TY - THES A1 - Fronhofer, Emanuel Alexis T1 - Beyond classical metapopulations: trade-offs and information use in dispersal ecology T1 - Differentielle Energieallokation und informierte Emigration: Eine Erweiterung des Metapopulationskonzeptes N2 - All animal and plant species must disperse in order to survive. Although this fact may seem trivial, and the importance of the dispersal process is generally accepted, the eco-evolutionary forces influencing dispersal, and the underlying movement elements, are far from being comprehensively understood. Beginning in the 1950s scientists became aware of the central role of dispersal behaviour and landscape connectivity for population viability and species diversity. Subsequently, dispersal has mainly been studied in the context of metapopulations. This has allowed researchers to take into account the landscape level, e.g. for determining conservation measures. However, a majority of theses studies classically did not include dispersal evolution. Yet, it is well known that dispersal is subject to evolution and that this process may occur (very) rapidly, i.e. over short ecological time-scales. Studies that do take dispersal evolution into account, mostly focus on eco-evolutionary forces arising at the level of populations - intra-specific competition or Allee effects, for example - and at the level of landscapes - e.g. connectivity, patch area and fragmentation. Yet, relevant ecological and evolutionary forces can emerge at all levels of biological complexity, from genes and individuals to populations, communities and landscapes. Here, I focus on eco-evolutionary forces arising at the gene- and especially at the individual level. Combining individual-based modelling and empirical field work, I explicitly analyse the influence of mobility trade-offs and information use for dispersal decisions - i.e. individual level factors - during the three phases of dispersal - emigration, transfer and immigration. I additionally take into account gene level factors such as ploidy, sexual reproduction (recombination) and dominance. Mobility-fertility trade-offs may shape evolutionarily stable dispersal strategies and lead to the coexistence of two or more dispersal strategies, i.e. polymorphisms and polyphenisms. This holds true for both dispersal distances (chapter 3) and emigration rates (chapter 4). In sessile organisms - such as trees or corals - maternal investment, i.e. transgenerational trade-offs between maternal fertility and propagule dispersiveness, can be the cause of bimodal and fat-tailed dispersal kernels. However, the coexistence of two or more dispersal strategies may be critically dependent on gene level factors, such as ploidy or dominance (chapter 4). Passively dispersing individuals may realize such multimodal dispersal kernels by mixing different dispersal vectors. Active choice of these vectors allows to optimize the kernel. As most animals have evolved some kind of memory and sensory apparatus - chemical, acoustic or optical sensors - it is obvious that these capacities should be used for dispersal decisions. Chapter 5 explores the use of chemical cues for vector choice in passively dispersed animals. I find that the neotropical phoretic flower mites Spadiseius calyptrogynae non-randomly mix different dispersal vectors, i.e. one short- and one long-distance disperser, in order to achieve fat-tailed dispersal kernels. Such kernels allow an optimal exploitation of patchily distributed habitats. In addition, this strategy increases the probability of successful immigration as the short-distance dispersal vectors show directed dispersal towards suitable habitats. Results from individual-based simulations support and explain my empirical findings. The use of memory and sensory apparatus in dispersal is also the main topic of chapter 6 which strives to bridge the gap between dispersal and movement ecology. In this part of my thesis I develop a model of non-random, memory-based animal movement strategies. Extending the movement ecology paradigm of Nathan (2008a) I postulate that four elements may be relevant for the emergence of efficient movement strategies: perception, memory, inference and anticipation. Movement strategies including these four elements optimize search efficiency at two scales: within patches and between patches. This leads to a significantly increased search efficiency over a comparable area restricted search strategy. These four chapters are completed by a general analysis of metapopulation dynamics (chapter 2). I find that although the metapopulation concept is very popular in theoretical ecology, classical metapopulations can be predicted to be rare in nature, as suggested by lacking empirical evidence. This is especially the case when gene level factors, such as ploidy and sex, are taken into account. In summary, my work analyses the effects of ecological and evolutionary forces arising at the gene- and individual level on the evolution of dispersal and movement strategies. I highlight the importance of including these limiting factors, mechanisms and processes and show how they impact the evolution of dispersal in spatially structured populations. All chapters demonstrate that these forces may have dramatic effects on resulting ecological and evolutionary dynamics. If we intend to understand animal and plant dispersal or movement, it is crucial to include eco-evolutionary forces emerging at all levels of complexity, from genes to communities and landscapes. This endeavour is certainly not purely academic. Particularly nowadays, with rapidly changing landscape structures and anticipated drastic shifts of climatic zones due to global change, dispersal is a factor that cannot be overestimated. N2 - Alle Tier- und Pflanzenarten müssen sich ausbreiten, um ihr Überleben zu sichern. Diese Feststellung mag trivial erscheinen und es wird inzwischen allgemein anerkannt, dass Ausbreitungsverhalten von groß er Relevanz ist. Trotzdem sind wir weit davon entfernt, die öko-evolutionären Kräfte zu verstehen, die Ausbreitungsverhalten und zu Grunde liegende Bewegungsstrategien determinieren. Erst in den 50er Jahren des 20. Jahrhunderts begannen Ökologen die zentrale Rolle von Ausbreitungsverhalten und Konnektivität für die langfristige Überlebensfähigkeit von Populationen sowie für die Entstehung und Aufrechterhaltung von Artenvielfalt zu begreifen. Bis heute wurde Ausbreitungsverhalten vor allem im Kontext von Metapopulationen analysiert. So konnte, über die Untersuchung der Dynamik von lokalen Populationen hinaus, die Landschaftsebene mit einbezogen werden, um beispielsweise effiziente Naturschutzmaßnahmen abzuleiten. Die Evolution von Ausbreitungsverhalten wurde in diesen Studien allerdings traditionellerweise nicht berücksichtigt. Inzwischen ist jedoch zweifelsfrei erwiesen, dass Ausbreitungsverhalten sehr schnell evolvieren kann, wodurch dieser Prozess bereits auf kurzen ökologischen Zeitskalen von Bedeutung ist. Untersuchungen zur Evolution von Ausbreitungsverhalten berücksichtigen aber meist nur öko-evolutionäre Kräfte die auf der Populations- und Landschaftsebene entstehen, wie etwa intra-spezifische Konkurrenz oder Allee Effekte beziehungsweise Konnektivität, Habitatgröße und Fragmentierungsgrad. Es ist jedoch einleuchtend, dass ökologische und evolutionäre Kräfte auf allen Ebenen biologischer Komplexität, von Genen und Individuen über Populationen und Artengemeinschaften bis hin zu Landschaften, entstehen können. In dieser Arbeit möchte ich die Bedeutung von öko-evolutionären Kräften, die speziell auf der individuellen und genetischen Ebene begründet sind, näher beleuchten. Ich verbinde einen individuen-basierten Modellierungsansatz mit empirischer Feldforschung, um den Einfluss von differentieller Energieallokation (“life-history trade-offs'”) und Informationsnutzung für Ausbreitungsentscheidungen während der drei Ausbreitungsphasen - Emigration, Transition und Immigration - zu untersuchen. Zusätzlich berücksichtige ich genetische Mechanismen und Rahmenbedigungen wie Ploidie, sexuelle Reproduktion (Rekombination) und Dominanz. Differentielle Allokation von Energie für Ausbreitungsverhalten und Reproduktion kann evolutionär stabile Ausbreitungsstrategien entscheidend beeinflussen und zur stabilen Koexistenz zweier oder mehrerer Strategien führen, also Polymorphismen und Polyphenismen bedingen. Dies gilt sowohl für Ausbreitungsdistanzen (Kapitel 3) als auch für Ausbreitungsraten (Kapitel 4). In sessilen Organismen, wie beispielsweise Bäumen oder Korallen, kann mütterliche Investition in die Ausbreitungsfähigkeit von Propagulen zu Bimodalität und zu einer Häufung von besonders langen Ausbreitungsdistanzen (“fat tail”) in der evolutionär stabilen Häufigkeitsverteilung der Ausbreitungsdistanzen (“dispersal kernel”) führen. Die stabile Koexistenz zweier oder mehrerer Ausbreitungsstrategien kann jedoch sehr stark von genetischen Faktoren, wie Ploidie oder Dominanz, abhängen. Arten, die sich aufgrund zu geringer Mobilität nicht selbst aktiv ausbreiten können, werden solch bimodale Häufigkeitsverteilungen von Ausbreitungsdistanzen, z.B. durch eine gezielte Mischstrategie mit zwei Vektoren, realisieren. Eine aktive Auswahl der entsprechenden Vektoren ermöglicht es, die resultierende Verteilung der Ausbreitungsdistanzen zu optimieren. Da die meisten Tiere über eine Form von Gedächtnis und sensorischem Apparat verfügen - um chemische, akustische oder optische Reize aufzunehmen und zu verarbeiten - ist es naheliegend, dass diese Fähigkeiten auch für Ausbreitungsentscheidungen genutzt werden. In Kapitel 5 untersuche ich die Nutzung chemischer Signale für die Auswahl von Ausbreitungsvektoren bei Tieren mit passiver Ausbreitung. Ich zeige, dass die neotropischen, phoretischen Blütenmilben der Art Spadiseius calyptrogynae gezielt zwei Ausbreitungsvektoren nutzen - einen Vektor, der v.a. kurze Strecken, und einen, der besonders lange Strecken zurücklegt - und damit, wie oben beschrieben, eine Häufung von groß en Werten in der Häufigkeitsverteilung der Ausbreitungdistanzen (“fat-tailed dispersal kernel”) erzielen. Solche Strategien sind optimal an die Ausbreitung in fragmentierten Habitaten angepasst. Zusätzlich erhöhen diese Blütenmilben durch ihre Vektorwahl die Wahrscheinlichkeit, sich erfolgreich auszubreiten, da einer der beiden Vektoren bevorzugt die Futterpflanze der Milben, also geeignetes Habitat, anfliegt. Diese empirische Studie wird durch eine individuen-basierte Simulation des Systems vervollständigt, deren Ergebnisse die empirischen Befunde erklären und deren Interpretation bestätigen. Die Nutzung von Gedächtnis und sensorischen Kapazitäten steht auch in Kapitel 6 im Vordergrund. In diesem Teil meiner Arbeit entwickle ich ein individuen-basiertes Modell für Bewegungs- und Suchstrategien, das, im Gegensatz zu den meisten Modellen in diesem Bereich, nicht auf Diffusionsprozessen (“random walks”) sondern auf der Nutzung von mentalen und sensorischen Kapazitäten basiert. Ziel ist es, ein mechanistisches Bewegungsmodell im Sinne von Nathan und Kollegen (2008a) zu schaffen und dadurch Ausbreitungs- und Bewegungsökologie zu vereinen. Ich postuliere, dass vier Elemente für die Emergenz von effizienten Bewegungs- und Suchstrategien von zentraler Bedeutung sind: Wahrnehmung, Erinnerung, Inferenz und Antizipation. Suchstrategien, die diese vier Elemente berücksichtigen, sind im Vergleich zu analogen Modellen, die auf Diffusionsprozessen basieren, besonders effizient, da sie ihre Sucheffizienz auf zwei Skalen, nämlich innerhalb und außerhalb von Ressourcenansammlungen, optimieren. Diese vier Kapitel werden durch eine allgemeine Analyse von Metapopulationsdynamiken in Kapitel 2 ergänzt. Hier zeige ich, dass, obwohl sich das Metapopulationskonzept in der theoretischen Ökologie großer Beliebtheit erfreut, klassische Metapopulationsdynamiken in natürlichen Systemen selten zu erwarten sind. Damit bestätigen sich Hinweise empirischer Studien, die seit Längerem berichten, dass klassische Metapopulationen wenig häufig aufzutreten scheinen. Klassische Metapopulationsdynamiken entstehen auch in Modellen besonders selten, wenn diese evolutionäre Faktoren, die auf der Genebene begründet sind, wie Ploidie und Rekombination, berücksichtigen. In der vorliegenden Arbeit analysiere ich die Effekte von ökologischen und evolutionären Kräften, die auf der Gen- und Individuenebene entstehen und evolutionär stabile Ausbreitungs- und Suchstrategien bestimmen. Ich hebe die zentrale Bedeutung dieser Rahmenbedigungen, Mechanismen und Prozesse hervor und zeige, wie sie die Evolution von Ausbreitungsstrategien in räumlich strukturierten Populationen maßgeblich beeinflussen. Aus meiner Arbeit wird unmittelbar ersichtlich, dass die Berücksichtigung öko-evolutionärer Kräfte auf allen Ebenen, von Genen bis hin zu Artengemeinschaften und Landschaften, von zentraler Bedeutung ist, wenn wir Ausbreitungsstrategien von Tieren und Pflanzen verstehen wollen. Dieses Ziel ist über den rein akademischen Bereich hinaus, z.B. auch für den Naturschutz, von großer Relevanz, denn besonders heutzutage, in Anbetracht schneller, anthropogener Veränderungen von Landschaftsstrukturen und des globalen Klimawandels ist die Fähigkeit zur Ausbreitung essentiell. KW - Metapopulation KW - Verbreitungsökologie KW - Ressourcenallokation KW - metapopulation KW - dispersal KW - trade-offs KW - information use KW - Differentielle Ressourcenallokation KW - Ausbreitungsverhalten KW - Informationsnutzung Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-85816 ER - TY - THES A1 - Sieber, Christian T1 - Holistic Evaluation of Novel Adaptation Logics for DASH and SVC T1 - Leistungsbewertung neuartiger Adaptionslogiken für DASH mit SVC N2 - Streaming of videos has become the major traffic generator in today's Internet and the video traffic share is still increasing. According to Cisco's annual Visual Networking Index report, in 2012, 60% of the global Internet IP traffic was generated by video streaming services. Furthermore, the study predicts further increase to 73% by 2017. At the same time, advances in the fields of mobile communications and embedded devices lead to a widespread adoption of Internet video enabled mobile and wireless devices (e.g. Smartphones). The report predicts that by 2017, the traffic originating from mobile and wireless devices will exceed the traffic from wired devices and states that mobile video traffic was the source of roughly half of the mobile IP traffic at the end of 2012. With the increasing importance of Internet video streaming in today's world, video content provider find themselves in a highly competitive market where user expectations are high and customer loyalty depends strongly on the user's satisfaction with the provided service. In particular paying customers expect their viewing experience to be the same across all their viewing devices and independently of their currently utilized Internet access technology. However, providing video streaming services is costly in terms of storage space, required bandwidth and generated traffic. Therefore, content providers face a trade-off between the user perceived Quality of Experience (QoE) and the costs for providing the service. Today, a variety of transport and application protocols exist for providing video streaming services, but the one utilized depends on the scenario in mind. Video streaming services can be divided up in three categories: Video conferencing, IPTV and Video-on-Demand services. IPTV and video-conferencing have severe real-time constraints and thus utilize mostly datagram-based protocols like the RTP/UDP protocol for the video transmission. Video-on-Demand services in contrast can profit from pre-encoded content, buffers at the end user's device, and mostly utilize TCP-based protocols in combination with progressive streaming for the media delivery. In recent years, the HTTP protocol on top of the TCP protocol gained widespread popularity as a cost-efficient way to distribute pre-encoded video content to customers via progressive streaming. This is due to the fact that HTTP-based video streaming profits from a well-established infrastructure which was originally implemented to efficiently satisfy the increasing demand for web browsing and file downloads. Large Content Delivery Networks (CDN) are the key components of that distribution infrastructure. CDNs prevent expensive long-haul data traffic and delays by distributing HTTP content to world-wide locations close to the customers. As of 2012, already 53% of the global video traffic in the Internet originates from Content Delivery Networks and that percentage is expected to increase to 65% by the year 2017. Furthermore, HTTP media streaming profits from existing HTTP caching infrastructure, ease of NAT and proxy traversal and firewall friendliness. Video delivery through heterogeneous wired and wireless communications networks is prone to distortions due to insufficient network resources. This is especially true in wireless scenarios, where user mobility and insufficient signal strength can result in a very poor transport service performance (e.g. high packet loss, delays and low and varying bandwidth). A poor performance of the transport in turn may degrade the Quality of Experience as perceived by the user, either due to buffer underruns (i.e. playback interruptions) for TCP-based delivery or image distortions for datagram-based real-time video delivery. In order to overcome QoE degradations due to insufficient network resources, content provider have to consider adaptive video streaming. One possibility to implement this for HTTP/TCP streaming is by partitioning the content into small segments, encode the segments into different quality levels and provide access to the segments and the quality level details (e.g. resolution, average bitrate). During the streaming session, a client-centric adaptation algorithm can use the supplied details to adapt the playback to the current environment. However, a lack of a common HTTP adaptive streaming standard led to multiple proprietary solutions developed by major Internet companies like Microsoft (Smooth Streaming), Apple (HTTP Live Streaming) and Adobe (HTTP Dynamic Streaming) loosely based on the aforementioned principle. In 2012, the ISO/IEC published the Dynamic Adaptive Streaming over HTTP (MPEG-DASH) standard. As of today, DASH is becoming widely accepted with major companies announcing their support or having already implemented the standard into their products. MPEG-DASH is typically used with single layer codecs like H.264/AVC, but recent publications show that scalable video coding can use the existing HTTP infrastructure more efficiently. Furthermore, the layered approach of scalable video coding extends the adaptation options for the client, since already downloaded segments can be enhanced at a later time. The influence of distortions on the perceived QoE for non-adaptive video streaming are well reviewed and published. For HTTP streaming, the QoE of the user is influenced by the initial delay (i.e. the time the client pre-buffers video data) and the length and frequency of playback interruptions due to a depleted video playback buffer. Studies highlight that even low stalling times and frequencies have a negative impact on the QoE of the user and should therefore be avoided. The first contribution of this thesis is the identification of QoE influence factors of adaptive video streaming by the means of crowd-sourcing and a laboratory study. MPEG-DASH does not specify how to adapt the playback to the available bandwidth and therefore the design of a download/adaptation algorithm is left to the developer of the client logic. The second contribution of this thesis is the design of a novel user-centric adaption logic for DASH with SVC. Other download algorithms for segmented HTTP streaming with single layer and scalable video coding have been published lately. However, there is little information about the behavior of these algorithms regarding the identified QoE-influence factors. The third contribution is a user-centric performance evaluation of three existing adaptation algorithms and a comparison to the proposed algorithm. In the performance evaluation we also evaluate the fairness of the algorithms. In one fairness scenario, two clients deploy the same adaptation algorithm and share one Internet connection. For a fair adaptation algorithm, we expect the behavior of the two clients to be identical. In a second fairness scenario, one client shares the Internet connection with a large HTTP file download and we expect an even bandwidth distribution between the video streaming and the file download. The forth contribution of this thesis is an evaluation of the behavior of the algorithms in a two-client and HTTP cross traffic scenario. The remainder of this thesis is structured as follows. Chapter II gives a brief introduction to video coding with H.264, the HTTP adaptive streaming standard MPEG-DASH, the investigated adaptation algorithms and metrics of Quality of Experience (QoE) for video streaming. Chapter III presents the methodology and results of the subjective studies conducted in the course of this thesis to identify the QoE influence factors of adaptive video streaming. In Chapter IV, we introduce the proposed adaptation algorithm and the methodology of the performance evaluation. Chapter V highlights the results of the performance evaluation and compares the investigated adaptation algorithms. Section VI summarizes the main findings and gives an outlook towards QoE-centric management of DASH with SVC. KW - DASH KW - DASH KW - SVC KW - crowdsourcing KW - quality of experience KW - qoe KW - progressive download KW - dynamic adaptive streaming over http Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-92362 ER - TY - THES A1 - Stegmann, Martin T1 - Identification of PUB22 Targets and Functional Characterization in PAMP-Triggered Immunity T1 - Identifizierung von PUB22 Zielproteinen und deren funktionelle Charakterisierung in der PAMP-vermittelten Immunantwort N2 - The three closely related PUB proteins PUB22, PUB23 and PUB24 were described as important regulators for PTI signaling and plant immunity. To find cellular targets regulated by the action of the PUB triplet we performed a yeast two-hybrid screen to identify candidate target proteins of PUB22. We could identify Exo70B2 as a target protein of PUB22, which is ubiquitinated by the E3-ubiquitin ligase and consequently degraded in response to flg22 perception. The importance of Exo70B2 for immunity was shown by reverse genetics, demonstrating that exo70B2 mutants are impaired in PTI signaling and plant immunity. Exo70B2 is one of 23 homologs of the yeast Exo70p in Arabidopsis thaliana, which is a subunit of an octameric protein complex, termed the exocyst. The exocyst complex is required for the tethering of post-Golgi vesicles to specific target membranes and thus an important component of intracellular vesicle trafficking. The elucidated function of Exo70B2 and its requirement for PTI signaling is a novel finding and similar functions had not yet been described for the exocyst complex or subunits thereof in plants. Additional target proteins of PUB22 are also predicted to be involved in vesicle trafficking processes, suggesting that PUB22 has specialized to regulate trafficking protein complexes required for PTI signaling. Furthermore, the presented work suggests a mechanism for the regulation of Exo70B2 ubiquitination by PUB22. PUB22 was shown to be intrinsically instable due to its autocatalytic ubiquitination activity. Flg22 treatment induced the rapid post-translational stabilization of PUB22. This potentially enables the ligase to efficiently interact with Exo70B2, resulting in its polyubiquitination and 26S-proteasome-dependent turnover. N2 - Die drei E3-Ubiquitin-Ligasen vom Pflanzen U-box Typ (PUB), PUB22, PUB23 und PUB24, wurden als wichtige Regulatoren der Pathogen-assozierten Molekülmuster (PAMP)-vermittelten Signaltransduktion und der damit verbundenen pflanzlichen Immunantwort beschrieben. Es wurde ein Hefe Zwei-Hybridscreen mit PUB22 durchgeführt, um die zellulären Vorgänge besser zu verstehen, welche durch die drei PUB Proteine reguliert werden. Mit Hilfe des Screens konnte Exo70B2 als ein Zielprotein von PUB22 identifiziert werden. Exo70B2 wird von PUB22 ubiquitiniert und nach Erkennung von flg22 durch das 26S-Proteasom abgebaut. In weiterführenden Experimenten konnte die Bedeutung von Exo70B2 für die pflanzliche Abwehrreaktion gezeigt werden. Mutanten von exo70B2 zeigten verminderte PAMP-vermittelte Signaltransduktion und eine beeinträchtigte Immunreaktion. Exo70B2 ist eines von 23 Arabidopsis Homologen des Exo70p Proteins aus Hefe. Exo70p ist eine Untereinheit des oktameren Exozystkomplexes, welcher für das Andocken von post-Golgi Vesikeln an spezifischen Zielmembranen benötigt wird. Der Exozystkomplex stellt demnach eine wichtige Komponente des intrazellulären Vesikeltransports dar. Die aufgeklärte Funktion von Exo70B2 und seine Bedeutung für die PAMP-vermittelte Signaltransduktion wurde bisher noch nicht für den Exozystkomplex oder einzelner seiner Untereinheiten im pflanzlichen System beschrieben. Demnach tragen die Ergebnisse dieser Arbeit zur Erkenntnis neuer Funktionen des Exozystkomplexes der Pflanze bei. Zusätzliche Zielproteine von PUB22 werden ebenfalls mit der Beteiligung an intrazellulären Vesikeltransportprozessen in Verbindung gebracht. Dies legt die Vermutung nahe, dass sich PUB22 auf die Regulation von Vesikeltransportprozessen spezialisiert hat, die für die PAMP-vermittelte Signalübertragung benötigt werden. Des Weiteren schlagen die Ergebnisse der vorliegenden Arbeit einen Regulationsmechanismus für die PUB22-vermittelte Exo70B2-Ubiquitinierung vor. Es konnte gezeigt werden, dass PUB22 intrinsisch instabil ist, was auf seine autokatalytische Ubiquitinierungsaktivität zurückzuführen ist. Nach Behandlung mit flg22 konnte eine rapide posttranslationale Stabilisierung von PUB22 beobachtet werden. Dies erlaubt möglicherweise die Interaktion mit Exo70B2, was zur Polyubiquitinierung und zum 26S-Proteasom-vermittelten Abbau des Zielproteins führt. KW - Ubiquitinligase KW - Exozytose KW - PTI signalling KW - vesicle trafficking KW - plant immunity Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-92061 ER - TY - THES A1 - Audretsch, Christof T1 - Analysing Quorum Sensing and Biofilm formation in Staphylococcus aureus T1 - Untersuchungen des Quorum-Sensing und der Biofilm-Bildung in Staphylokokkus aureus N2 - Staphylococcus aureus (SA) causes nosocomial infections including life threatening sepsis by multi-resistant strains (MRSA). It has the ability to form biofilms to protect it from the host immune system and from anti staphylococcal drugs. Biofilm and planctonic life style is regulated by a complex Quorum-Sensing (QS) system with agr as a central regulator. To study biofilm formation and QS mechanisms in SA a Boolean network was build (94 nodes, 184 edges) including two different component systems such as agr, sae and arl. Important proteins such as Sar, Rot and SigB were included as further nodes in the model. System analysis showed there are only two stable states biofilm forming versus planctonic with clearly different subnetworks turned on. Validation according to gene expression data confirmed this. Network consistency was tested first according to previous knowledge and literature. Furthermore, the predicted node activity of different in silico knock-out strains agreed well with corresponding micro array experiments and data sets. Additional validation included the expression of further nodes (Northern blots) and biofilm production compared in different knock-out strains in biofilm adherence assays. The model faithfully reproduces the behaviour of QS signalling mutants. The integrated model allows also prediction of various other network mutations and is supported by experimental data from different strains. Furthermore, the well connected hub proteins elucidate how integration of different inputs is achieved by the QS network. For in silico as well as in vitro experiments it was found that the sae-locus is also a central modulator of biofilm production. Sae knock-out strains showed stronger biofilms. Wild type phenotype was rescued by sae complementation. To elucidate the way in which sae takes influence on biofilm formation the network was used and Venn-diagrams were made, revealing nodes regulated by sae and changed in biofilms. In these Venn-diagrams nucleases and extracellular proteins were found to be promising nodes. The network revealed DNAse to be of great importance. Therefore qualitatively the DNAse amount, produced by different SA mutants was measured, it was tried to dissolve biofilms with according amounts of DNAse and the concentration of nucleic acids, proteins and polysaccharides were measured in biofilms of different SA mutants. With its thorough validation the network model provides a powerful tool to study QS and biofilm formation in SA, including successful predictions for different knock-out mutant behaviour, QS signalling and biofilm formation. This includes implications for the behaviour of MRSA strains and mutants. Key regulatory mutation combinations (agr–, sae–, sae–/agr–, sigB+, sigB+/sae–) were directly tested in the model but also in experiments. High connectivity was a good guide to identify master regulators, whose detailed behaviour was studied both in vitro and in the model. Together, both lines of evidence support in particular a refined regulatory role for sae and agr with involvement in biofilm repression and/or SA dissemination. With examination of the composition of different mutant biofilms as well as with the examination of the reaction cascade that connects sae to the biofilm forming ability of SA and also by postulating that nucleases might play an important role in that, first steps were taken in proving and explaining regulatory links leading from sae to biofilms. Furthermore differences in biofilms of different mutant SA strains were found leading us in perspective towards a new understanding of biofilms including knowledge how to better regulate, fight and use its different properties. N2 - Staphylococcus aureus (SA) ist Auslöser nosocomialer Infektionen, darunter auch die, durch multiresistente Stämme (MRSA) verursachte, lebensbedrohliche Sepsis. Er hat die Fähigkeit Biofilme zu bilden, um sich vor dem Immunsystem des Wirtes und vor Antibiotika zu schützen. Biofilm und planktonische Lebensweise werden durch ein komplexes Quorum-Sensing (QS) System mit agr als zentralem Regulator gesteuert. Um die Biofilm Bildung und QS Mechanismen in SA zu untersuchen, wurde ein Boole´sches Netzwerk erstellt (94 Knoten, 184 Kanten) das verschiedene Zwei-Komponenten-Systeme wie agr, sae und arl mit einschließt. Wichtige Proteine wie Sar, Rot und SigB wurden als weitere Knoten im Modell eingefügt. Die Systemanalyse zeigte, dass es nur zwei stabile Zustände gibt, Biofilm bildend versus planktonisch, in denen deutlich unterschiedliche Subnetzwerke angeschaltet sind. Überprüfungen anhand von Gen-Expressions-Daten bestätigten dies. Die Netzwerkstabilität wurde zuerst an Hand von bestehendem Wissen und Literatur getestet. Zudem stimmte die vorhergesagte Aktivität der Knoten in verschiedenen in silico Knock-out Stämmen sehr gut mit den zugehörigen Micro-array Experimenten und Daten überein. Zusätzliche Validierungen schlossen die Expression weiterer Knoten (Northern Blots) und die Biofilm Produktion, verglichen durch Biofilm adherence assays, in verschiedenen Knock-out Stämmen mit ein. Das Modell spiegelt zuverlässig das Verhalten von QS-Signal Mutanten wieder. Das integrierte Modell erlaubt auch Vorhersagen von diversen anderen Netzwerk Mutationen und wird durch experimentelle Daten unterschiedlicher Stämme gestützt. Außerdem zeigen die gut vernetzten Hubproteine im Detail auf, wie die Verarbeitung unterschiedlicher Eingangssignale durch das QS-Netzwerk erreicht wird. Sowohl für in silico als auch für in vitro Experimente konnte gezeigt werden, dass der sae-Locus auch einen zentralen Modulator der Biofilm Produktion darstellt, sae Knock-out Stämme zeigten stärkere Biofilme. Der Wildtyp Phänotyp wurde durch sae Komplementierung wiederhergestellt. Um die Art und Weise, mit der sae Einfluss auf die Biofilm Bildung nimmt, aufzuklären wurde das Netzwerk genutzt und Venn-Diagramme angefertigt, welche Knoten aufzeigten, die durch sae reguliert- und in Biofilmen verändert sind. In den Venn-Diagrammen wurden Nucleasen und extrazelluläre Proteine als vielversprechende Knoten gefunden. Das Netzwerk zeigte, dass DNAse von großer Bedeutung ist. Deswegen wurde qualitativ die, durch unterschiedliche SA Mutanten produzierte, DNAse-Menge gemessen, es wurde versucht den Biofilm mit vergleichbaren DNAse-Mengen aufzulösen und die Konzentration von Nukleinsäuren, Proteinen und Polysacchariden wurde in Biofilmen unterschiedlicher SA Mutanten gemessen. Aufgrund seiner sorgfältigen Überprüfung stellt das Netzwerk-Modell ein mächtiges Werkzeug zur Untersuchung von QS und Biofilm Bildung in SA dar, erfolgreiche Vorhersagen über das Verhalten unterschiedlicher Knock-out Mutanten, QS Signale und Biofilm Bildung eingeschlossen. Dies beinhaltet Prognosen für das Verhalten von MRSA Stämmen und Mutanten. Zentrale regulatorische Mutationskombinationen (agr–, sae–, sae–/agr–, sigB+, sigB+/sae–) wurden direkt im Model aber auch in Experimenten getestet. Hohe Konektivität war ein guter Anhaltspunkt, um Hauptregulatoren zu identifizieren, deren Verhalten in vitro und im Modell untersucht wurde. Zusammen unterstützen beide Beweisführungen im Besonderen eine präzise regulatorische Rolle von sae und agr in Bezug auf Biofilm Unterdrückung und/oder SA Ausbreitung. Mit der Untersuchung der Zusammensetzung von Biofilmen unterschiedlicher Mutanten, ebenso wie mit der Untersuchung der Reaktionskaskade die sae mit der Biofilm Bildungsfähigkeit von SA verbindet und auch dem Überprüfen der Annahme, dass Nukleasen eine bedeutende Rolle hierin spielen könnten, wurden erste Schritte unternommen, um regulatoische Interaktionen zwischen sae und Biofilmen zu belegen und zu untersuchen. Des Weiteren wurden Unterschiede in Biofilmen verschiedener mutierter SA Stämme gefunden, die uns voraussichtlich zu einem neuem Verständnis von Biofilmen und damit zu Wissen führen, wie ihre Eigenschaften reguliert, bekämpft und genutzt werden können. KW - Staphylococcus aureus KW - Biofilm KW - Simulation KW - Staphylococcus aureus KW - Quorum-Sensing KW - Simulation KW - Biofilm KW - sae KW - agr KW - sar KW - DNAse Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-92189 ER - TY - THES A1 - Kern, Julia T1 - Field Dependence of Charge Carrier Generation in Organic Bulk Heterojunction Solar Cells T1 - Feldabhängige Ladungsträgergenerierung in organischen Bulk Heterojunction-Solarzellen N2 - In the field of organic photovoltaics, one of the most intensely researched topics to date is the charge carrier photogeneration in organic bulk heterojunction solar cells whose thorough understanding is crucial for achieving higher power conversion efficiencies. In particular, the mechanism of singlet exciton dissociation at the polymer–fullerene interface is still controversially debated. This work addresses the dissociation pathway via relaxed charge transfer states (CTS) by investigating its field dependence for reference material systems consisting of MDMO-PPV and one of the fullerene derivatives PC61BM, bisPCBM and PC71BM. Field dependent photoluminescence (PL(F)) and transient absorption (TA(F)) measurements give insight into the recombination of charge transfer excitons (CTE) and the generation of polarons, respectively. Optically detected magnetic resonance and atomic force microscopy are used to characterize the morphology of the samples. The comparison of the experimental field dependent exciton recombination recorded by PL(F) and the theoretical exciton dissociation probability given by the Onsager–Braun model yields the exciton binding energy as one of the key parameters determining the dissociation efficiency. The binding energies of both the singlet exciton in neat MDMO-PPV and the CTE in MDMO-PPV:PC61BM 1:1 are extracted, the latter turning out to be significantly reduced with respect to the one of the singlet exciton. Based on these results, the field dependence of CTE dissociation is evaluated for MDMO-PPV:PC61BM blends with varying fullerene loads by PL(F) and TA(F). For higher PC61BM contents, the CTE binding energies decrease notably. This behavior is ascribed to a larger effective dielectric constant for well-intermixed blends and to an interplay between dielectric constant and CTE delocalization length for phase separated morphologies, emphasizing the importance of high dielectric constants for the charge carrier photogeneration process. Finally, the CTE binding energies are determined for MDMO-PPV blends with different fullerene derivatives, focusing on the influence of the acceptor LUMO energy. Here, the experimental results suggest the latter having no or at least no significant impact on the binding energy of the CTE. Variations of this binding energy are rather related to different trap levels in the acceptors which seem to be involved in CTS formation. N2 - Einer der aktuellen Forschungsschwerpunkte im Bereich der organischen Photovoltaik ist die Ladungsträgergenerierung in „Bulk Heterojunction-Solarzellen“, deren Verständnis für das Erreichen höherer Wirkungsgrade essentiell ist. In diesem Zusammenhang wird derzeit vor allem der Dissoziationsmechanismus der Singulett-Exzitonen an der Donator–Akzeptor-Grenzfläche kontrovers diskutiert. Die vorliegende Arbeit adressiert die Dissoziation über relaxierte Ladungstransferzustände (CTS) durch die Untersuchung der Feldabhängigkeit des Prozesses für Referenzsysteme aus MDMO-PPV und den Fullerenderivaten PC61BM, bisPCBM sowie PC71BM. Feldabhängige Photolumineszenz (PL(F)) und transiente Absorption (TA(F)) geben Aufschluss über Rekombination der Ladungstransfer-Exzitonen (CTE) bzw. Polaronengenerierung, während die Morphologie der Proben durch optisch detektierte Magnetresonanz und Rasterkraftmikroskopie charakterisiert wird. Durch den Vergleich der experimentellen feldabhängigen Exzitonenrekombination mit der theoretischen Dissoziationswahrscheinlichkeit nach dem Onsager–Braun-Modell lässt sich die Bindungsenergie der Exzitonen ermitteln, welche die Dissoziationseffizienz entscheidend beeinflusst. Diese Bindungsenergie wird sowohl für das Singulett-Exziton in reinem MDMO-PPV als auch für das CTE in MDMO-PPV:PC61BM 1:1 bestimmt, wobei letztere deutlich geringer als die des Singulett-Exzitons ist. Ausgehend von diesen Ergebnissen wird die Feldabhängigkeit der CTE-Dissoziation für MDMO-PPV:PC61BM-Gemische mit unterschiedlichen Fullerenanteilen durch PL(F) und TA(F) untersucht. Für höhere PC61BM-Konzentrationen nimmt die CTE-Bindungsenergie merklich ab. Dieses Verhalten ist für gut durchmischte Systeme einer höheren dielektrischen Konstante und für phasenseparierte Systeme dem Zusammenspiel zwischen Dielektrizitätskonstante und Delokalisation der CTE zuzuschreiben. Schließlich werden die CTE-Bindungsenergien für Gemische aus MDMO-PPV und unterschiedlichen Fullerenderivaten bestimmt, wobei der Einfluss des LUMO-Niveaus der Akzeptoren im Fokus steht. Dieses scheint jedoch keine oder nur eine geringe Bedeutung für die CTE-Bindungsenergie zu besitzen. Die beobachteten Variationen der Bindungsenergie sind vielmehr auf die Fallenzustände der Akzeptoren zurückzuführen, welche offenbar an der Ausbildung der CTS beteiligt sind. KW - Organische Solarzelle KW - organic photovoltaics KW - charge transfer state KW - bulk heterojunction KW - binding energy KW - charge carrier generation KW - Bindungsenergie Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-91963 ER - TY - THES A1 - Eman, Maher Othman Sholkamy T1 - In Vitro and In Vivo Analysis of Insulin-Induced Oxidative Stress and DNA Damage T1 - In vitro und in vivo Untersuchungen von Insulin-induzierten oxidativen Stress und DNA-Schäden N2 - Hyperinsulinemia, a condition with excessively high insulin blood levels, is related to an increased cancer incidence. Diabetes mellitus, metabolic syndrome, obesity and polycystic ovarian syndrome are the most common of several diseases accompanied by hyperinsulinemia. Since an elevated cancer risk especially for colon and kidney cancers, was reported for those patients, we investigated for the first time the induction of genomic damage by insulin mainly in HT29 (human colon cells), LLC-PK1 (pig kidney cells), HK2 (human kidney cells) and peripheral lymphocytes, and to confirm the genotoxicity of insulin in other cells from different tissues. To ascertain that the insulin effects were not only limited to permanent cell lines, rat primary colon, kidney, liver and fatty tissue cells were also studied. To connect the study and the findings to in vivo conditions, two in vivo models for hyperinsulinemia were used; Zucker diabetic fatty rats in a lean and diabetic state infused with different insulin concentrations and peripheral lymphocytes from type 2 diabetes mellitus patients. First, the human colon adenocarcinoma cells (HT29) showed significant elevation of DNA damage using comet assay and micronucleus frequency analysis upon treatment with 5 nM insulin in standard protocols. Extension of the treatment to 6 days lowered the concentration needed to reach significance to 0.5-1 nM. Insulin enhanced the cellular ROS production as examined by the oxidation of the dyes 2´,7´-dichlorodihydrofluorescein diacetate (H2DCF-DA) and dihydroethidium (DHE). The FPG modified comet assay and the reduction of damage by the radical scavenger tempol connected the insulin-mediatedDNA damage to ROS production. To investigate the sources of ROS upon insulin stimulation, apocynin and VAS2870 as NADPH oxidase inhibitors and rotenone as mitochondrial inhibitor were applied in combination with insulin and all of them led to a reduction of the genomic damage. Investigation of the signaling pathway started by evaluation of the binding of insulin to its receptor and to the IGF-1 receptor. The results showed the involvement of both receptors in the signaling mechanism. Following the activation of both receptors, PI3K activation occurs leading to phosphorylation of AKT which in turn activates two pathways for ROS production, the first related to mitochondria and the second through activation of Rac1 , resulting in the activation of Nox1. Both pathways could be activated through AKT or through the mitochondrial ROS which in turn could activates Nox1. Studying another human colon cancer cell line, Caco-2 and rat primary colon cells in vitro confirmed the effect of insulin on cellular chromatin. We conclude that pathophysiological levels of insulin can cause DNA damage in colon cells, which may contribute to the induction or progression of colon cancer. Second, in kidney cells, insulin at a concentration of 5 nM caused a significant increase in DNA damage in vitro. This was associated with the formation of reactive oxygen species (ROS). In the presence of antioxidants, blockers of the insulin and IGF-1 receptors, and a phosphatidylinositol 3-kinases (PI3K) inhibitor, the insulin mediated DNA damage was reduced. Phosphorylation of AKT was increased and p53 accumulated. Inhibition of the mitochondrial and NADPH oxidase related ROS production reduced the insulin mediated damage. In primary rat cells insulin also induced genomic damage. HK2 cells were used to investigate the mechanistic pathway in the kidney The signaling is identical to the one in the colon cells untill the activation of the mitochondrial ROS production, because after the activation of PI3K activation of Nox4 occurs at the same time across talk between mitochondria and Nox4 activation has been suggested and might play a role in the observed effects. In the in vivo model, kidneys from healthy, lean ZDF rats, which were infused with insulin to yield normal or high blood insulin levels, while keeping blood glucose levels constant, the amounts of ROS and p53 were elevated in the high insulin group compared to the control level group. ROS and p53 were also elevated in diabetic obese ZDF rats. The treatment of the diabetic rats with metformin reduced the DNA oxidation measured as 8-oxodG as well as the ROS production in that group. HL60 the human premyelocytic cells and cultured lymphocytes as models for the hemopoietic system cells showed a significant induction for DNA damage upon treatment with insulin. The diabetic patients also exhibited an increase in the micronucleus formation over the healthy individuals. In the present study, we showed for the first time that insulin induced oxidative stress resulting in genomic damage in different tissues, and that the source of the produced ROS differs between the tissues. If the same mechanisms are active in patients, hyperinsulinemia might cause genomic damage through the induction of ROS contributing to the increased cancer risk, against which the use of antioxidants as well as mitochondrial and NADPH oxidase inhibitors might exert protective effects with cancer preventive potential under certain conditions. Normal healthy human plasma insulin concentrations are in the order of 0.04 nM after overnight fasting and increase to less than about 0.2 nM after a meal. Pathophysiological levels can reach 1 nM and can stay above 0.2 nM for the majority of the daytime yielding condictions close to the insulin concentrations determined in the present study. Whether the observed effects also occur in vivo and whether they actually initiate or promote tumor formation remains to be determined. However, if proof of that can be obtained, our experiments with inhibitors indicate chances for pharmacological intervention applying antioxidants or enzyme inhibitors. It will not be the aim to reduce ROS in any case or as much as possible because ROS have now been recognized as important signaling molecules and participatants in immune defense, but a reduction to physiological levels instead of pathophysiological levels in the context of a disease associated with ROS overproduction might be beneficial. N2 - Hyperinsulinämie, ein Zustand mit sehr hohen Blutspiegeln an Insulin, ist mit einer erhöhten Krebsinzidenz verbunden. Diabetes mellitus, das metabolische Syndrom, Adipositas und das polyzystische Ovarialsyndrom sind die häufigsten Krankheiten, die mit Hyperinsulinämie einhergehen. Da ein erhöhtes Krebsrisiko insbesondere für Krebserkrankungen des Dickdarms und der Niere beobachtet wurde, untersuchten wir erstmals die Induktion von Genomschäden durch Insulin in HT29-Zellen (humane Dickdarmzellen), LLC-PK1-Zellen (Nierenzellen vom Schwein), HK2-Zellen (humane Nierenzellen) und peripheren humanen Lymphozyten. Um die Gentoxizität von Insulin zu bestätigen, wurden auch andere Zellen aus unterschiedlichen Geweben untersucht. Um sicherzustellen, dass die Effekte durch Insulin nicht auf permanente Zelllinien beschränkt sind, wurden außerdem primäre Rattenzellen aus Dickdarm, Niere, Leber und Fettgewebe untersucht. Um die Befunde auf die in-vivo-Situation übertragen zu können, kamen zwei Hyperinsulinämie-Modelle zum Einsatz: mit Insulin infundierte ZDF-Ratten (Zucker Diabetic Fatty Rats) und periphere Lymphozyten von Patienten mit Diabetes Typ 2. Zuerst konnte in humanen Adenokarzinomzellen des Dickdarms (HT29) eine signifikante Erhöhung des DNA-Schadens in Standard-Protokollen des Comet Assays und des Mikrokerntests nach Behandlung mit 5 nM Insulin gezeigt werden. Bei Verlängerung der Behandlungszeit auf 6 Tage wurden signifikante Effekte bereits ab 0,5 nM beobachtet. Insulin erhöhte die zelluläre ROS-Produktion, die als Oxidation der Farbstoffe 2‘,7‘-Dichlorodihydrofluoresceindiacetat (H2DCF-DA) und Dihydroethidium (DHE) nachgewiesen wurde. Befunde aus dem FPG-modifizierten Comet Assay und das Ergebnis, dass der Radikalfänger Tempol die Zellen schützte stellen die Verbindung zwischen Insulin-verursachtem DNA-Schaden und ROS produktion her. Um die ROS-Quelle nach Stimulation mit Insulin zu untersuchen, wurden Apocynin und VAS2870 als NADPH-Oxidase-Inhibitoren und Rotenon als Inhibitor der Mitochondrien mit Insulin kombiniert. Alle diese Stoffe reduzierten den Genomschaden. Zur Charakterisierung der Signalwege wurde zunächst die Bindung von Insulin an seinen Rezeptor und an den IGF1-Rezeptor untersucht. Beide Rezeptoren sind an der Signaltransduktion beteiligt. Nach Aktivierung der Rezeptoren wird die PI3K aktiviert, dies führt zur Phosphorylierung von AKT. Dadurch werden zwei Wege zur ROS-Produktion aktiviert, der erste involviert die mitochondriale Atmungskette , der zweite agiert durch Rac1-Aktivierung. Letzteres resultiert in der Aktivierung der NADPH-Oxidase Isoform Nox1. Der Effekt von Insulin auf zelluläres Chromatin konnte in einer weiteren humanen Dickdarmkrebs-Zelllinie und in primären Dickdarmzellen der Ratte in vitro bestätigt werden. Wir schlussfolgern aus diesen Ergebnissen, dass pathophysiologische Insulin-Blutspiegel DNA-Schäden im Dickdarm verursachen können. Dies könnte zur Induktion oder Progression von Dickdarmkrebs beitragen. Weiterhin verursachte Insulin bei einer Konzentration von 5 nM einen signifikanten Anstieg von DNA-Schäden in vitro. Dies war verbunden mit der Bildung von reaktiven Sauerstoffspezies (ROS). Bei Anwesenheit von Antioxidantien, von Inhibitoren des Insulin-Rezeptors bzw. des IGF-1-Rezeptors und eines Phosphatidylinositol-3-Kinase(PI3K)-Inhibitors war der Insulin-vermittelte DNA-Schaden reduziert. Phosphorylierung von AKT war erhöht und das Protein P53 akkumulierte. Inhibierung der ROS-Produktion der Mitochondrien bzw. der NADPH-Oxidase reduzierte den Insulin-vermittelten Schaden. In primären Rattenzellen induzierte Insulin ebenfalls Genomschaden. HK2-Zellen wurden zur Untersuchung der mechanistischen Signalwege in der Niere eingesetzt. Die Signalwege entsprechen denen der Dickdarmzellen bis zur Aktivierung der ROS-Produktion in den Mitochondrien. Als Folge der Aktivierung von PI3K wird Nox4 aktiviert. Eine Verbindung zwischen Mitochondrien und Nox4-Aktivierung wird vorgeschlagen. Als in-vivo-Modell wurden gesunde ZDF-Ratten mit Insulin infundiert, um normale bzw. erhöhte Insulin-Blutspiegel bei konstanten Glukose-Blutspiegeln zu erreichen. In den Nieren war der Gehalt an ROS und an P53 in der Gruppe mit erhöhten Insulin-Blutspiegeln im Vergleich zur Kontrolle erhöht. ROS und P53 waren ebenfalls in den diabetischen und adipösen ZDF-Ratten erhöht. Die Behandlung der diabetischen Ratten mit Metformin reduzierte die DNA-Oxidation, die in Form von 8-oxodG bestimmt wurde, und die ROS-Produktion in dieser Gruppe. HL60-Zellen und kultivierte Lymphozyten als Modelle für das hämatopoetische System zeigten eine signifikante Induktion von DNA-Schäden nach Behandlung mit Insulin. Diabetes-Patienten zeigten eine erhöhte Mikrokern-Bildung im Vergleich zu gesunden Probanden. In der vorliegenden Studie konnten wir erstmals zeigen, dass Insulin-induzierter oxidativer Stress zu Genomschaden führt, und dass in unterschiedlichen Geweben ROS aus verschiedenen Quellen stammten. Falls diese Mechanismen auch in Patienten auftreten, könnte Hyperinsulinämie durch ROS-Induktion zu Genomschaden führen und damit zu einem erhöhten Krebsrisiko beitragen. Unter bestimmten Bedingungen könnten Antioxidantien bzw. Inhibitoren der Mitochondrien oder der NADPH-Oxidase protektive Effekte ausüben. KW - Insulin KW - Oxidativer Stress KW - DNS-Schädigung KW - oxidativer Stress KW - DNA Schaden KW - Insulin KW - Insulin KW - Oxidative Stress KW - DNA Damage Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-69274 ER - TY - THES A1 - Busch, Rhoda T1 - Redundancy and indispensability of NFATc1-isoforms in the adaptive and innate immune system T1 - Redundanz und Unentbehrlichkeit der NFATc1-Isoformen im adaptiven und natürlichen Immunsystem N2 - Peritonitis is a common disease in man, frequently caused by fungi, such as Candida albicans; however, in seldom cases opportunistic infections with Saccharomyces cerevisiae are described. Resident peritoneal macrophages (prMΦ) are the major group of phagocytic cells in the peritoneum. They express a broad range of surface pattern recognition receptors (PRR) to recognize invaders. Yeast infections are primarily detected by the Dectin-1 receptor, which triggers activation of NFAT and NF-κB pathways. The transcription of the Nfatc1 gene is directed by the two alternative promoters, inducible P1 and relatively constitutive P2 promoter. While the role of P1-directed NFATc1α-isoforms to promote survival and proliferation of activated lymphocytes is well-established, the relevance of constitutively generated NFATc1β-isoforms, mainly expressed in resting lymphocytes, myeloid and non-lymphoid cells, remains unclear. Moreover, former work at our department indicated different roles for NFATc1α- and NFATc1β-proteins in lymphocytes. Our data revealed the functional role of NFATc1 in peritoneal resident macrophages. We demonstrated that the expression of NFATc1β is required for a proper immune response of prMΦ during fungal infection-induced acute peritonitis. We identified Ccl2, a major chemokine produced in response to fungal infections by prMΦ, as a novel NFATc1 target gene which is cooperatively regulated through the NFAT- and canonical NF-κB pathways. Consequently, we showed that NFATc1β deficiency in prMΦ results in a decreased infiltration of inflammatory monocytes, leading to a delayed clearance of peritoneal fungal infection. We could further show that the expression of NFATc1β-isoforms is irrelevant for homeostasis of myeloid and adaptive immune system cells and that NFATc1α- (but not β-) isoforms are required for a normal development of peritoneal B1a cells. In contrast to the situation in myeloid cells, NFATc1β deficiency is compensated by increased expression of NFATc1α-isoforms in lymphoid cells. As a consequence, NFATc1ß is dispensable for activation of the adaptive immune system. Taken together our results illustrate the redundancy and indispensability of NFATc1-isoforms in the adaptive and innate immune system, indicating a complex regulatory system for Nfatc1 gene expression in different compartments of the immune system and likely beyond that. N2 - Peritonitis ist eine alltägliche Erkrankung des Menschen, die häufig durch Pilze wie Candida albicans verursacht wird. In seltenen Fällen sind opportunistische Infektionen mit Saccharomyces cerevisiae beschrieben. Residente peritoneale Makrophagen (prMΦ) stellen die größte Gruppe phagozytischer Zellen im Peritoneum dar. Sie exprimieren eine Vielzahl an Oberflächenrezeptoren (PRR), mit denen sie Eindringlinge erkennen. Hefeinfektionen werden dabei vorrangig durch den Dectin-1 Rezeptor erkannt, der die Signalkaskaden von NFAT und NF-κB aktiviert. Die Transkription des Nfatc1 Gens wird von zwei Promotoren gelenkt, dem induzierbaren P1-Promotor und dem relativ konstitutiven P2-Promotor. Während die Funktionen der vom P1-Promotor erzeugten NFATc1α-Isoformen beim Überleben und der Proliferation von aktivierten Lymphozyten wohl bekannt sind, blieb die Rolle der NFATc1β-Isoformen, die vor allem in ruhenden lymphoiden, myeloiden und nicht-lymphoiden Zellen exprimiert sind, bisher ungeklärt. Unser Labor konnte zudem zeigen, dass NFATc1α- und NFATc1β- Proteine unterschiedliche Funktionen in Lymphozyten haben. Unsere Daten lassen die Funktion von NFATc1 in peritonealen Makrophagen erkennen. Wir konnten zeigen, dass während einer pilzinduzierten Peritonitis die Expression von NFATc1β für eine vollständige Immunantwort der prMΦ erforderlich ist. Wir haben Ccl2, das am stärksten von prMΦ als Antwort auf Pilzinfektionen produzierte Chemokin, als neues NFATc1 Zielgen identifiziert, welches kooperativ von den NFATc1- und NF-κB-Signalwegen reguliert wird. Folglich konnten wir zeigen, dass das Fehlen von NFATc1β in prMΦ zu einer Abnahme der eindringenden entzündlichen Monozyten führt, was eine verspätete Abwehr von peritonealen Pilzinfektionen zur Folge hat. Des Weiteren konnten wir zeigen, dass die Expression von NFATc1β-Isoformen irrelevant für die Homöostase von myeloiden und adaptiven Immunzellen ist, und dass NFATc1α- (aber nicht β-) Isoformen für die normale Entwicklung von B1a-Zellen erforderlich sind. In lymphoiden Zellen wird das Fehlen von NFATc1β, im Gegensatz zur Situation in myeloiden Zellen, durch eine erhöhte Expression von NFATc1α kompensiert. Demzufolge ist NFATc1β entbehrlich für die Aktivierung des adaptiven Immunsystems. Zusammengenommen zeigen unsere Ergebnisse die Redundanz und die Unentbehrlichkeit der NFATc1-Isoformen im adaptiven und natürlichen Immunsystem, welche auf ein komplexes regulatorisches System der Genexpression von NFATc1 in den verschiedenen Kompartimenten des Immunsystems und wahrscheinlich darüber hinaus hinweist. KW - Immunsystem KW - NFATc1 KW - fungal infection KW - Ccl2 KW - Bauchfellentzündung KW - Mykose KW - Transkriptionsfaktor Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-91096 ER - TY - THES A1 - Kamke, Janine T1 - Single-cell genomics of the candidate phylum Poribacteria T1 - Einzelzell-genomische Analysen des Candidatus Phylums Poribacteria N2 - Marine sponges are the most ancient metazoans and of large ecological importance as drivers of water and nutrient flows in benthic habitats. Furthermore marine sponges are well known for their association with highly abundant and diverse microbial consortia. Microorganisms inhabit the extracellular matrix of marine sponges where they can make up to 35% of the sponge’s biomass. Many microbial symbionts of marine sponges are highly host specific and cannot, or only in very rare abundances, be found outside of their host environment. Of special interest is the candidate phylum Poribacteria that was first discovered in marine sponges and still remains almost exclusive to their hosts. Phylogenetically Poribacteria were placed into the Planctomycetes, Verrucomicrobia, Chlamydiae superphylum and similarly to many members of this superphylum cell compartmentation has been proposed to occur in members of the Poribacteria. The status as a candidate phylum implies that no member of Poribacteria has been obtained in culture yet. This restricts the investigations of Poribacteria and their interactions with marine sponges to culture independent methods and makes functional characterisation a difficult task. In this PhD thesis I used the novel method of single-cell genomics to investigate the genomic potential of the candidate phylum Poribacteria. Single-cell genomics enables whole genome sequencing of uncultivated microorganisms by singularising cells from the environment, subsequent cell lysis and multiple displacement amplification of the total genomic DNA. This process yields sufficient amounts of DNA for whole genome sequencing and genome analysis. This technique and its relevance for symbiosis studies are discussed in this PhD thesis. Through the application of single-cell genomics it was possible to increase the number of single-amplified genomes of the candidate phylum Poribacteria from initially one to a total of six. Analyses of these datasets made it possible to enhance our understanding of the metabolism, taxonomy, and phylum diversity of Poribacteria and thus made these one of the best-characterised sponge symbionts today. The poribacterial genomes represented three phylotypes within the candidate phylum of which one appeared dominant. Phylogenetic and phylogenomic analyses revealed a novel phylogenetic positioning of Poribacteria distinctly outside of the Planctomycete, Verrucomicorbia, Chlamydiae superphylum. The occurrence of cell compartmentation in Poribacteria was also revisited based on the obtained genome sequences and revealed evidence for bacterial microcompartments instead of the previously suggested nucleotide-like structures. An extensive genomic repertoire of glycoside hydrolases, glycotransferases, and other carbohydrate active enzymes was found to be the central shared feature between all poribacterial genomes and showed that Poribacteria are among those marine bacteria with the largest genomic repertoire for carbohydrate degradation. Detailed analysis of the carbohydrate metabolism revealed that Poribacteria have the genomic potential for degradation of a variety of polymers, di- and monosaccharaides that allow these symbionts to feed various nutrient sources accessible through the filter-feeding activities of the sponge host. Furthermore the poribacterial glycobiome appeared to enable degradation of glycosaminoglycan chains, one of the main building blocks of extracellular matrix of marine sponges. Different lifestyles resulting from the poribacterial carbohydrate degradation potential are discussed including the influence of nutrient cycling in sponges, nutrient recycling and scavenging. The findings of this thesis emphasise the long overlooked importance of heterotrophic symbionts such as Poribacteria for the interactions with marine sponges and represent a solid basis for future studies of the influence heterotrophic symbionts have on their sponge hosts. N2 - Marine Schwämme sind die ältesten rezenten Vertreter der Metazoen. Durch ihre Lebensweise als Nahrungsfiltrierer und den damit verbundenen Einfluss auf Nährstoffzyklen sind sie von großer ökologischer Relevanz. Des Weiteren zeichnen sich marine Schwämme durch das Zusammenleben mit hoch abundanten und diversen mikrobiellen Konsortien aus. Diese Mikroorganismen finden sich meist in der extrazellulären Matrix des Schwamms und können mehr als 35% der Biomasse ihres Wirtes ausmachen. Viele mikrobielle Symbionten mariner Schwämme sind hochgradig Wirts-spezifisch und können außerhalb des Schwamms, wenn überhaupt, nur in sehr geringer Anzahl gefunden werden. Von besonderem Interesse ist das Candidatus Phylum Poribacteria, dessen Vertreter erstmals in Schwämmen detektiert wurden, und bis heute fast ausschließlich in Schwämmen zu finden sind. Phylogenetisch wurden die Poribacteria dem Planctomycetes, Verrucomicrobia, Chlamydiae (PVC) Superphylum zugeordnet. Einige Vertreter dieses Superphylums zeigen einen kompartimentierten Zellplan auf, eine Eigenschaft, die auch für Poribacteria vermutet wird. Der Status der Poribacteria als Candidatus Phylum zeigt das Fehlen von Vertretern dieses Phylums in Reinkultur an. Dies beschränkt die Untersuchung von Poribacteria auf kultivierungs-unabhängige Methoden, was die funktionelle Charakterisierung dieser Symbionten erheblich erschwert. In dieser Doktorarbeit wurde das Candidatus Phylum Poribacteria mit Hilfe der Einzelzellgenomik untersucht. Diese Methode ermöglicht es aus vereinzelten mikrobiellen Zellen genomische Komplett-DNA zu gewinnen und diese, mit Hilfe der so genannten „multiple displacement amplification“ so hochgradig anzureichern, dass eine Sequenzierung und anschließende Analyse erfolgen kann. Die Anwendung dieser Methode im Allgemeinen und in der Symbiose Forschung wird in dieser Doktorarbeit diskutiert. Die Einzelzellgenomik ermöglichte die Anzahl poribakterieller Datensätze, von zunächst einem auf sechs Genome zu erhöhen. Die Analyse dieser Genome konnte unser Verständnis vom metabolischen Potential, der Taxonomie und der Diversität innerhalb dieses Phylums deutlich zu verbessern. Die poribakteriellen Genome beschrieben drei Phylotypen, von denen einer deutlich dominierte. Die phylogenetische Position des Phylums Poribacteria wurde außerdem anhand von phylogenetischen und phylogenomischen Berechnungen neu zugeordnet, und resultierte in einer deutlichen Positionierung außerhalb des PVC Superphylums. Weiterhin wurden genomische Hinweise auf einen kompartimentierten Zellplan in Poribacteria gefunden. Diese deuten aber nicht, wie vorher vermutet, auf eine Zellkern-ähnliche Struktur hin, sondern auf bakterielle Mikrokompartimente mit noch ungeklärter Funktion. Die Analysen des genomischen Potentials zeigte in allen Datensätzen eine hohe Frequenz von Genen, die für Glycosidasen, Glycosyltransferasen und weiteren Proteinen der so-genannten „carbohydrate active enzymes“ kodieren, was ein ausgeprägtes Vermögen zum Kohlehydratabbau aufzeigt. Das genomische Potential von Poribacteria zum Abbau von Kohlehydratpolymeren, Di- und Monosacchariden konnte durch detaillierte Analyse des Kohlehydratmetabolismus genau beschrieben werden. Außerdem schienen Poribacteria Glycosaminoglycanketten, die zentrale Bausteine der extrazellulären Matrix des Schwammes sind, abbauen zu können. Die aus dem poribakteriellen Glycobiome resultierenden möglichen Lebensweisen als Wiederverwerter von Nährstoffen, Mitesser, oder auch der Einfluss von Poribacteria auf Nährstoffzyklen im Schwamm werden in dieser Doktorarbeit diskutiert. Die Ergebnisse dieser Doktorarbeit machen Poribacteria zu den genomische am besten beschriebenen Schwammsymbionten und zeigen die lange übersehene Relevanz heterotropher Symbionten in marinen Schwämmen. KW - Bakterien KW - Schwämme KW - Einzelzellgenomik KW - Single-cell genomics KW - Poribacteria KW - Sponges KW - Bacteria KW - Symbiose KW - Genanalyse Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-85042 ER - TY - THES A1 - Reddy, Edamakanti Chandrakanth T1 - Role of differential phosphorylation of c-Jun N-terminal domain in degenerative and inflammatory pathways of CNS T1 - Die Rolle der unterschiedlichen Phosphorylierung von c-Jun N-terminale Domäne bei degenerativen und entzündlichen Wirkungen im Nervengewebe N2 - In this study we have investigated the possible role of c-Jun and it’s activation by the JNK pathway in neuronal cell death and in the inflammatory response of activated astrocytes. The first part of this thesis focuses on the role of site specific phosphorylation of c-Jun in neuronal cell death. The second part focuses on the function of c-Jun in LPS-mediated activation of Bergmann glia cells. In the nervous system, activation of c-Jun transcription factor by different isoforms of c-Jun N-terminal kinase (JNK) functions in various cellular programs, including neurite outgrowth, repair and apoptosis. Yet, the regulatory mechanism underlying the functional dichotomy of c-Jun remains to be elucidated. Serine (S) 63/73 and threonine (T) 91/93 of c-Jun are the target phosphorylation sites for JNKs in response to various stimuli. Yet, these two groups of phosphorylation sites are differentially regulated in vivo, as the S63/73 sites are promptly phosphorylated upon JNK activation, whereas T91/93 phosphorylation requires a priming event at the adjacent T95 site. In our study, we used cerebellar granule cell (CGC) apoptosis by trophic/potassium (TK) deprivation as a model system to investigate the regulation and function of site-specific c-Jun phosphorylation at the S63 and T91/T93 JNK-sites in neuronal cell death. In this model system, JNK induces pro-apoptotic genes through the c-Jun/Ap-1 transcription factor. On the other side, a survival pathway initiated by lithium leads to repression of pro-apoptotic c-Jun/Ap-1 target genes without interfering with JNK activity. Yet, the mechanism by which lithium inhibits c-Jun activity remains to be elucidated. We found that TK-deprivation led to c-Jun phosphorylation at all three JNK sites. However, immunofluorescence analysis of c-Jun phosphorylation at single cell level revealed that the S63 site was phosphorylated in all c-Jun-expressing cells, whereas the response of T91/T93 phosphorylation was more sensitive, mirroring the switch-like apoptotic response of cerebellar granular cells (CGCs). Furthermore, we observed that lithium impaired c-Jun phosphorylation at T91/93, without interfering with S63/73 phosphorylation or JNK activation, suggesting that T91/T93 phosphorylation triggers c-Jun pro-apoptotic activity. Notably, expression of a c-Jun mutant lacking the T95-priming site for T91/93 phosphorylation (c-Jun A95) mimicked the effect of lithium on both cell death and c-Jun site-specific phosphorylation, whereas it was fully able to induce neurite outgrowth in naïve PC12 cells. Vice-versa, a c-Jun mutant bearing aspartate-substitution of T95 overwhelmed lithium-mediate protection of CGCs from TK-deprivation, validating that inhibition of T91/T93/T95 phosphorylation underlies the effect of lithium on cell death. Mass-spectrometry analysis confirmed that c-Jun is phosphorylation at T91/T93/T95 in cells. Moreover, recombinant-JNK phosphorylated c-Jun at T91/T93 in a T95-dependent manner. Based on our results, we propose that T91/T93/T95 phosphorylation of c-Jun functions as a sensitivity amplifier of the JNK cascade, setting the threshold for c-Jun pro-apoptotic activity in neuronal cells. In the central nervous system (CNS), the c-Jun transcription factor has been mainly studied in neuronal cells and coupled to apoptotic and regenerative pathways following brain injury. Besides, several studies have shown a transcriptional role of c-Jun in activated cortical and spinal astrocytes. In contrast, little is known about c-Jun expression and activation in Bergmann glial (BG) cells, the radial cerebellar astrocytes playing crucial roles in cerebellar development and physiology. In this study, we used neuronal/glial cerebellar cultures from neonatal mice to assess putative functions of c-Jun in BG cells. By performing double immunocytochemical staining of c-Jun and two BG specific markers, S100 and GLAST, we observed that c-Jun was highly expressed in radial glial cells derived from Bergmann glia. Bergmann glia-derived cells expressed toll-like receptor (TLR 4) and treatment with bacterial lipopolysaccharide (Le et al.) induced c-Jun phosphorylation at S63, exclusively in BG cells. Moreover, LPS induced IL-1β expression and inhibition of JNK activity abolished both c-Jun phosphorylation and the increase of IL-1β mRNA. Notably, we also observed that LPS failed to induce IL-1β mRNA in neuronal/glial cerebellar cultures generated from conditional knockout mice lacking c-Jun expression in the CNS. These results indicate that c-Jun plays a central role in c-Jun in astroglial-specific induction of IL-1β. Furthermore, we confirmed in vivo that c-Jun is expressed in BG cells, during the formation of the BG monolayer. Altogether, our finding underlines a putative role of c-Jun in astroglia-mediated neuroinflammatory dysfunctions of the cerebellum. N2 - In dieser Studie wurde die Rolle des Transkriptionsfaktors c-Jun sowie seine Aktivierung durch den JNK Signalweg beim neuronalen Zelltod und bei der entzündlichen Reaktion von aktivierten Astrozyten untersucht. Der erste Teil dieser Arbeit beschäftigt sich mit der Rolle von mehrfacher c-Jun Phosphorylierung an den Aminosäuren Threonin 91/93/95 beim neuronalen Zelltod. Der zweite Teil konzentriert sich auf die Rolle von c-Jun und seine Transaktivierung in LPS-vermittelter Aktivierung von Bergmann Gliazellen. Als Modellsystem für den neuronalen Zelltod wurde die Apoptose von cerebellären Granularzellen (CGC) durch trophische Granulazellen Kaliumkonzentration-Erniedrigung (TK) verwendet, da es ein Modell der Um das ist, das Zusammenspiel von pro-apoptotischen und pro-Überleben Signalwegen beim neuronalen Zelltod zu studieren. In diesem Modell induziert die c-Jun N-terminale Kinase (JNK) pro-apoptotische Gene durch den c-Jun/Ap-1 Transkriptionsfaktor. Auf der anderen Seite, führt ein Lithium-induzierter Überleben-Signalweg zur Unterdrückung der pro-apoptotischen c-Jun/Ap-1 Zielgene, ohne Interferenz mit JNK Aktivität. Es blieb jedoch der Mechanismus zu klären, durch den Lithium c-Jun-Aktivität hemmt. In der Arbeit wurde dieses Modellsystem benutzt, um die Regulation und Funktion der c-Jun-Phosphorylierung durch JNK an den Stellen S63 und T91/T93 beim neuronalen Zelltod zu studieren. Es wurde gefunden, dass TK-Kaliumerniedrigung zu c-Jun phosphorylierung führte und zwar an allen drei durch JNK phosphorylierbaren Ser/Thr (JNK-Stellen). Immunfluoreszenzanalyse von c-Jun Phosphorylierung auf Einzel-Zell-Ebene ergab jedoch, dass die S63-Stelle in allen c-Jun-exprimierenden Zellen phosphoryliert wurde, während T91/T93 Phosphorylierung empfindlicher war, analog zur Schalter-ähnlichen apoptotischen Antwort von CGCs. Umgekehrt verhinderte Lithium T91 und T93 Phosphorylierung und Zelltod ohne Wirkung auf die S63-Seite, was darauf hindeutet, dass T91/T93 Phosphorylierung durch c-Jun eine pro-apoptotische Aktivität auslöst. Dementsprechend schützte eine c-Jun-Mutation, der die T95 Priming-Stelle für T91/93 Phosphorylierung fehlt (T95A), CGCs vor Apoptose, wohingegen T95A Neuriten-wachstum in PC12-Zellen induzieren konnte. Umgekehrt führte eine c-Jun Mutante mit Aspartat-Substitution von T95 (T95D ) zur Aufhebung der schützenden Wirkung von Lithium auf CGC Apoptose, wodurch bestätigt wurde, dass die Inhibierung der T91/T93/T95 Phosphorylierung der Wirkung von Lithium auf den Zelltod zugrundeliegt. Massenspektrometrie-Analyse bestätigte multiple Phosphorylierung von c-Jun an T91/T93/T95 in den Zellen. Außerdem wurde rekombinantes c-Jun durch JNK an T91/T93 in einer T95-abhängigen Weise phosphoryliert. Basierend auf diesen Ergebnissen wird vorgeschlagen, dass T91/T93/T95 phosphorylierung von c-Jun als Empfindlichkeit-Verstärker der JNK-Kaskade fungiert, der die Schwelle für die pro-apoptotische Aktivität von c-Jun in neuronalen Zellen einstellt. Im zentralen Nervensystem (ZNS) wurde die Rolle des c-Jun Transkriptionsfaktors hauptsächlich bei neuronalem Zelltod und bei neuronaler Regeneration nach Hirnschädigung untersucht. Außerdem wurde auch eine Rolle für c-Jun bei der Transkription in aktivierten kortikalen und spinalen Astrozyten beschrieben. Im Gegensatz dazu ist wenig bekannt über die Expression von c-Jun und dessen Transaktivierung in Bergmann Gliazellen (BG)-Zellen, die eine entscheidende Rolle bei der Entwicklung des Kleinhirns und dessen Physiologie spielen. In dieser Arbeit wurde die putative Rolle von c-Jun bei kultivierten neuronalen/BG-Zellen aus dem Maus-Kleinhirn untersucht. Immunfluoreszenzanalyse von c-Jun und zwei für BG-Zellen spezifische Marker, S100 und GLAST, ergab, dass c-Jun in BG-Zellen hoch exprimiert wurde. Außerdem wurde gefunden, dass der Toll-like Rezeptor TLR4 in BG-Zellen exprimiert ist und dass die Behandlung mit bakteriellem Lipopolysaccharid (Le et al.) die c-Jun- Phosphorylierung an S63 induziert. Zusätzlich wurde gefunden, dass LPS IL-1b Expression induziert und die Inhibierung von JNK Aktivität verhinderte sowohl c-Jun-Phosphorylierung, als auch die Zunahme von IL-1 b mRNA. Insbesondere konnte LPS die IL-1b mRNA-Produktion in neuronalen / BG-Kulturen aus konditionellen Knockout Mäusen, denen c-Jun im ZNS fehlte, nicht induzieren, womit gezeigt wurde, dass c-Jun bei der Astroglia-spezifischen Induktion von IL-1 b essentiell ist. Immunohistochemische Analyse von c-Jun-exprimierenden Zellen im postnatalen Kleinhirn bestätigte in-vivo die Expression von c-Jun in BG Zellen und förderte eine dynamische Expression von c-Jun während der Entwicklung der BG Monolayer zutage. Insgesamt unterstreichen die Befunde dieser Arbeit eine wahrscheinliche Rolle von c-Jun bei Astroglia-vermittelten neuroinflammatorischen Funktionsstörungen des Kleinhirns. KW - Jun KW - c-Jun Phosphorylierung KW - JNK KW - neuronal cell death KW - Licl KW - degeneratives Nervengewebe KW - Zelltod KW - Zentralnervensystem KW - Astrozyt Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-90748 ER - TY - THES A1 - Schwindt, Daniel T1 - Permafrost in ventilated talus slopes below the timberline - A multi-methodological study on the ground thermal regime and its impact on the temporal variability and spatial heterogeneity of permafrost at three sites in the Swiss Alps T1 - Permafrost in ventilierten Hangschutthalden unterhalb der Waldgrenze – eine multi-methodische Studie zum thermalen Regime des Untergrundes und dessen Einfluss auf die zeitliche Variabilität und räumliche Heterogenität von Permafrost an drei Standorten in den Schweizer Alpen N2 - In the central Alps permafrost can be expected above 2300 m a.s.l., at altitudes where mean annual air temperatures are below -1 °C. Isolated permafrost occurrences can be detected in north-exposed talus slopes, far below the timberline, where mean annual air temperatures are positive. Driving factors are assumed to be a low income of solar radiation, a thick organic layer with high insulation capacities as well as the thermally induced chimney effect. Aim of this study is to achieve a deeper understanding of the factors determining the site-specific thermal regime, as well as the spatially limited and temporally highly variable permafrost occurrences in vegetated talus slopes. Three supercooled talus slopes in the Swiss Alps were chosen for investigation. Substantially different characteristics were a central criterion in the selection of study sites. Located in the Upper Engadin, climatic conditions, altitude as well as dimensions of the talus slopes are comparable for the study sites Val Bever and Val Susauna; major differences are rooted in the nature of talus substrate and in humus- and vegetation distribution. Characteristics of the Brüeltobel site, located in the Appenzeller Alps, diverge with regard to climatic conditions, altitude and dimensions of the talus slope; humus- and vegetation compositions are comparable to the Val Susauna site. Confirmation and characterisation of ground ice is accomplished by the application of electrical resistivity and seismic refraction tomography. The estimation of the spatial permafrost distribution is based on quasi-3D resistivity imaging. For the confirmation of permafrost and the analysis of its temporal variability electrical resistivity monitoring arrays were constructed and installed at all study sites, to allow year-round measurements. In addition to resistivity monitoring, the – up to now – first seismic refraction tomography winter monitoring was conducted at the Val Susauna to analyse the permafrost evolution during the winter half-year. Investigations of the ground thermal regime were based on the analysis of temperature logger data. Besides recording air- and ground surface temperatures, focus was set on the temperature evolution in vents and in the organic layer. To analyse the relationship between permafrost distribution on the one hand and humus- and vegetation distribution on the other hand, an extensive mapping of humus characteristics and vegetation composition was conducted at Val Susauna. The existence of permafrost could be proven at all study sites. Spatially, permafrost bodies show a narrow transition to neighbouring, unfrozen areas. As observed at Val Susauna, the permafrost distribution strongly correlates with areas with exceptionally thick organic layer, high percentages of mosses and lichens in the undergrowth and dwarf grown trees. The temporal variability of permafrost has proven to be exceptionally high, with the magnitude of seasonal variations distinctly exceeding intra-annual changes. Thereby, the winter season is characterised by a significant supercooling. During snowmelt a growth in volumetric ice content is induced by refreezing of percolating meltwater on the supercooled talus. The results confirmed the fundamental influence of the chimney effect on the existence and temporal variability of permafrost in talus slopes. Divergences in the effectiveness of the thermal regime were detected between the study sites. These are based on differences in the nature of talus material, humus characteristics and vegetation composition. During summer, the organic material is usually dry at the daytime, inducing a high insulation capability and a protection of the subsurface against high atmospheric temperatures. Bouldery talus slopes typically show an organic layer that is fragmented by large boulders, which induces a strongly reduced insulation capability and allows an efficient heat exchange by convective airflow and percolating precipitation water. In the winter half-year, the thermal conductivity of the organic layer increases massively under moist or frozen conditions, allowing an efficient, conductive cooling of the talus material. The convective cooling in bouldery talus slopes affects an earlier onset and a higher magnitude of supercooling than under consistent humus conditions. Here, conductive heat flow is dominant and the cooling in autumn is buffered by a prolonged zero curtain. The snow cover has proven to be incapable of prohibiting an efficient supercooling of the talus slope in winter, almost independent from thickness. N2 - In den zentralen Alpen kann oberhalb einer Höhe von 2300 m ü NN, bei mittleren Jährlichen Lufttemperaturen von weniger als -1 °C mit Permafrost gerechnet werden. Isolierte Permafrostvorkommen können jedoch in nordexponierten Hangschutthalden bei positiven Jahresmitteltemperaturen bis weit unterhalb der Waldgrenze gefunden werden. Ziel dieser Arbeit ist es ein tieferes Verständnis des Faktorenkomplexes zu erreichen, der das standortspezifische, kleinräumige thermale Regime bedingt und damit die räumlich begrenzten, zeitlich hochvariablen Permafrostvorkommen in Hangschutthalden unterhalb der Waldgrenze steuert und ermöglicht. Drei unterkühlte Hangschutthalden in den Schweizer Alpen wurden zur Untersuchung ausgewählt. Bei der Auswahl wurde im Speziellen auf fundamentale Unterschiede der Standortfaktoren Wert gelegt. Im Unterengadin gelegen sind die klimatischen Bedingungen, Höhenlage sowie die Dimensionen der Hangschutthalden an den Standorten Val Bever und Val Susauna vergleichbar; Eigenschaften des Hangschuttes, Charakteristik der organischen Auflage sowie der Vegetation unterscheiden sich. Der in den Appenzeller Alpen gelegenen Standort Brüeltobel unterscheidet sich in Bezug auf die klimatischen Bedingungen, der Höhenlage und der Ausmaße der Hangschutthalde deutlich, zeigt jedoch eine zum Val Susauna ähnliche Humus- und Vegetationscharakteristik. Der Nachweis und die Charakterisierung von Untergrundeis basiert auf der Kombination von elektrischer Widerstandstomographie und seismischer Refraktionstomographie. Zur Detektion der räumlichen Verbreitung von Untergrundeis wurden diese Methoden durch quasi-3D Widerstandstomographie ergänzt. Zum Nachweis von Permafrost und zur Analyse seiner zeitlichen Variabilität wurden Monitoringauslagen konstruiert und an den Standorten fest installiert. Widerstandsmessungen wurden ganzjährig durchgeführt. In Ergänzung zu dem Widerstandsmonitoring wurde im Val Susauna erstmalig seismische Refraktionstomographie zum Monitoring der Permafrostentwicklung im Winter durchgeführt. Die Analyse des thermalen Regimes basiert auf der Analyse von Temperaturlogger Daten. Dabei wurden neben Luft- und Bodentemperaturen vor allem die Temperaturentwicklung in den Schloten sowie in der Humusauflage berücksichtigt. Zur Untersuchung des Zusammenhangs der Permafrostverbreitung mit der Humus- und Vegetationscharakteristik wurde im Val Susauna eine Kartierung der Humuseigenschaften sowie der Vegetationszusammensetzung durchgeführt. An allen untersuchten Standorten konnte Permafrost nachgewiesen werden. Räumlich sind die Permafrostkörper sehr scharf von benachbarten Hangbereichen abgegrenzt. Am Standort Val Susauna konnte ein hoher räumlicher Zusammenhang zwischen der Permafrostverbreitung und Bereichen mit besonders mächtiger Humusauflage, einem hohen Anteil an Moosen und Flechten im Unterwuchs sowie einem ausgeprägtem Zwergwuchs nachgewiesen werden. Die zeitliche Variabilität des Permafrost hat sich an allen Standorten als außergewöhnlich hoch herausgestellt. Dabei übersteigt die Magnitude der saisonalen Variabilität die mehrjährigen Veränderungen deutlich. Das Winterhalbjahr zeigt sich durch eine effiziente Unterkühlung geprägt. Die Schneeschmelze im Frühling steht in Verbindung mit einem deutlichen Eiszuwachs, der durch ein wiedergefrieren des versickernden Schmelzwassers an dem unterkühlten Hangschutt verursacht wird. Die Ergebnisse haben den fundamentalen Einfluss des Chimney Effekt auf die Existenz und zeitliche Variabilität von Permafrost in Hangschutthalden bestätigt. Unterschiede in der Wirkungsweise des thermalen Regimes konnten herausgestellt werden, die in erster Linie auf die unterschiedliche Ausprägung der Humusauflage, Charakteristik des Hangschutts, und die Vegetationszusammensetzung zurückzuführen sind. Während des Sommers ermöglicht die sehr geringe thermische Leitfähigkeit der im oberflächennahen Bereich meist recht trockenen organischen Auflage eine ausgeprägte Isolation des Untergrundes gegenüber hohen Außentemperaturen. Die in grobblockigen Hangschutthalden zu findende ungleichmäßige, von Blockmaterial fragmentierte organische Auflage zeigt eine deutlich geringere Isolationsfähigkeit und ermöglicht einen effektiven, Wärmeaustausch durch Konvektion und perkolierendes Niederschlagswasser. Im Winterhalbjahr steigt die thermische Leitfähigkeit des organischen Materials unter durchfeuchteten sowie gefrorenen Bedingungen massiv an und ermöglicht eine effiziente Auskühlung der Hangschutts. Die Unterkühlung in grobblockigen Hangschutthalden zeigt aufgrund des auch im Winter ausgeprägten konvektiven Wärmeflusses eine höhere Magnitude und ein früheres Einsetzen als bei homogenen Humusauflagen, wo konduktiver Wärmefluss dominiert und eine Auskühlung im Herbst durch eine ausgeprägte zero-curtain Periode gepuffert wird. Der Einfluss der Schneedecke auf das thermale Regime ist insgesamt gering; ihre Isolationsfähigkeit ist, annähernd unabhängig von der Schneemächtigkeit, stark reduziert. KW - Engadin KW - Schutthalde KW - geophysical monitoring KW - Val Bever Val Susauna Brüeltobel KW - 3D-ERT electrical resistivity tomography KW - SRT seismic refraction tomography KW - ERT electrical resistivity tomography KW - chimney effect KW - humus cover organic material KW - ground thermal regime KW - scree slope KW - sporadic alpine permafrost KW - Dauerfrostboden KW - Monitorüberwachung KW - Permafrost KW - Geophysics Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-90099 ER - TY - THES A1 - Baerwald, Philipp T1 - Neutrinos from gamma-ray bursts, and the multi-messenger connection T1 - Neutrinos von Gammablitzen und die Verbindung zu multiplen Botenteilchen N2 - In this work, we take a look at the connection of gamma-ray bursts (GRBs) and ultra-high-energy cosmic rays (UHECR) as well as the possibilities how to verify this connection. The currently most promising approach is based on the detection of high-energy neutrinos, which are associated with the acceleration of cosmic rays. We detail how the prompt gamma-ray emission is connected to the prediction of a neutrino signal. We focus on the interactions of photons and protons in this regard. At the example of the current ANTARES GRB neutrino analysis, we show the differences between numerical predictions and older analytical methods. Moreover, we discuss the possibilities how cosmic ray particles can escape from GRBs, assuming that UHECR are entirely made up of protons. For this, we compare the commonly assumed neutron escape model with a new component of direct proton escape. Additionally, we will show that the different components, which contribute to the cosmic ray flux, strongly depend on the burst parameters, and test the applicability on some chosen GRBs. In a further step, we continue with the considerations regarding the connection of GRBs and UHECR by connecting the GRB source model with the cosmic ray observations using a simple cosmic ray propagation code. We test if it is possible to achieve the observed cosmic ray energy densities with our simple model and what the consequences are regarding the prompt GRB neutrino flux predictions as well as the cosmogenic neutrinos. Furthermore, we consider the question of neutrino lifetime and how it affects the prompt GRB neutrino flux predictions. In a final chapter, we show that it is possible to apply the basic source model with photohadronic interactions to other types of sources, using the example of the microquasar Cygnus X-3. N2 - In dieser Arbeit beschäftigen wir uns mit dem Zusammenhang von Gammablitzen (GRBs) und ultra-hochenergetischer kosmischer Strahlung (UHECR) sowie mit den Möglichkeiten, wie dieser Zusammenhang überprüft werden kann. Der zur Zeit erfolgsversprechendste Ansatz basiert auf der Detektion von hochenergetischen Neutrinos, die mit der Beschleunigung von kosmischer Strahlung assoziiert werden. Wir zeigen detailliert, wie die prompte Emission im Bereich der Gammastrahlung mit der Voraussage eines Neutrinosignals zusammenhängt. Ein besonderes Augenmerk legen wir hierbei auf die Wechselwirkung von Photonen und Protonen. Am Beispiel der aktuellen Analyse des ANTARES Neutrinoteleskops zu Neutrinos von Gammablitzen zeigen wir, wie sich numerische Voraussagen von älteren analytischen Methoden unterscheiden. Des Weiteren diskutieren wir Möglichkeiten, wie die Teilchen der kosmischen Strahlung aus einem Gammablitz entkommen können, wenn die ultra-hochenergetische kosmische Strahlung nur aus Protonen bestehen würde. Wir vergleichen dazu das meistens angenommene Entkommen in Form von Neutronen mit einer neuen Komponente von direkt ausströmenden Protonen. Auch zeigen wir, dass die unterschiedlichen Komponenten, die zur kosmischen Strahlung beitragen, stark von den verwendeten Parametern der Gammablitze abhängen, und uberprüfen die Modelle an einigen ausgewählten Gammablitzen. In einem weiteren Schritt führen wir die Überlegungen zu dem Zusammenhang von Gammablitzen und ultra-hochenergetischer kosmischer Strahlung fort, in dem wir mittels eines einfachen Propagationscodes für kosmische Strahlung eine Verbindung zwischen dem Quellmodell für Gammablitze und den Beobachtungsdaten der kosmischen Strahlung herstellen. Wir überprüfen, inwieweit sich die beobachteten Energiedichten der kosmischen Strahlung mittels unseres einfachen Modells realisieren lassen und welche Konsequenzen dies für die Voraussagen der prompten Neutrinoemission von Gammablitzen sowie den kosmogenischen Neutrinos hat. Außerdem gehen wir der Frage nach, wie die vorausgesagten prompten Neutrinoflüsse von einer endlichen Lebenszeit der Neutrinos beeinflusst werden würden. In einem letzten Kapitel übertragen wir das verwendete grundlegende Quellmodell mit photohadronischen Wechselwirkungen auf eine andere Klasse von Quellen, am Beispiel von Voraussagen fürden Mikroquasar Cygnus X-3. KW - Neutrino KW - Gamma-Burst KW - neutrinos KW - gamma-ray bursts KW - cosmic rays KW - multi-messenger physics KW - Gammablitze KW - Kosmische Strahlung KW - multiple Botenteilchen KW - UHECR KW - Burst Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-85333 ER - TY - THES A1 - Brill, Martin Fritz T1 - Processing and plasticity within the dual olfactory pathway in the honeybee brain T1 - Verarbeitung und Plastizität in der dualen olfaktorischen Bahn im Gehirn der Honigbiene N2 - In their natural environment animals face complex and highly dynamic olfactory input. This requires fast and reliable processing of olfactory information, in vertebrates as well as invertebrates. Parallel processing has been shown to improve processing speed and power in other sensory systems like auditory or visual. In the olfactory system less is known about olfactory coding in general and parallel processing in particular. With its elaborated olfactory system and due to their specialized neuroanatomy, honeybees are well-suited model organism to study parallel olfactory processing. The honeybee possesses a unique neuronal architecture - a dual olfactory pathway. Two mirror-imaged output projection neuron (PN) pathways connect the first olfactory processing stage, the antennal lobe (analog to the vertebrates olfactory bulb, OB), with the second, the mushroom body (MB) known to be involved in orientation and learning and memory, and the lateral horn (LH). The medial antennal lobe-protocerebral tract (m-APT) first innervates the MB and thereafter the LH, while the other, the lateral-APT (l-APT) projects in opposite direction. The neuroanatomy and evolution of these pathways has been analyzed, yet little is known about its physiology. To analyze the function of the dual olfactory pathway a new established recording method was designed and is described in the first chapter of this thesis (multi-unit-recordings). This is now the first time where odor response from several PNs of both tracts is recorded simultaneously and with high temporal precision. In the second chapter the PN odor responses are analyzed. The major findings are: both tracts responded to all tested odors but with differing characteristics. Since recent studies describe the input to the two tracts being rather similar, the results now indicate differential odor processing along the tracts, therefore this is a good indicator for parallel processing. PNs of the m-APT process odors in a sparse manner with delayed response latencies, but with high odor-specificity. PNs of the l-APT in contrast respond to several odor stimuli and respond in general faster. In some PN originating from both tracts, characteristics of odor-identity coding via response latencies were found. Analyzing the over-all dynamic range of the PNs both l- and m-APT PNs were tested over a large odor concentration range (10-6 to 10-2) (3. chapter). The PNs responded with linear and non-linear correlation of the response strength to the odor concentration. In most cases the l-APT is comparatively more sensitive to low odor concentrations. Response latency decreases with increasing odor concentration in both tracts. Alternative coding principles and elaboration on the hypothesis whether the dual olfactory pathway may contribute coincidental innervation to the next higher-order neurons, the Kenyon cells (KC), is subject of the 4. chapter. Cross-correlations and synchronous responses of both tracts show that in principle odors may be coded via temporal coding. Results suggest that odor processing is enhanced if both tracts contribute to olfactory coding together. In another project the distribution of the inhibitory neurotransmitter GABA (gamma-aminobutyric acid) was measured in the bee’s MB during adult maturation (5. chapter). GABAergic inhibition is of high importance in odor coding. An almost threefold decrease in the total amount of GABAergic innervation was found during adult maturation in the l- and m-APT target region, in particular at the change in division of labor during the transition from a young nurse bee to an older forager bee. The results fit well into the current understanding of brain development in the honeybee and other social insects during adult maturation, which was described as presynaptic pruning and KC dendritic outgrowth. Combining anatomical and functional properties of the bee’s dual olfactory pathway suggests that both rate and temporal coding are implemented along two parallel streams. Comparison with recent work on analog output pathways of the vertebrate’s OB indicates that parallel processing of olfactory information may be a common principle across distant taxa. N2 - In ihrem natürlichen Lebensraum sind Lebewesen mit komplexen und hoch dynamischen olfaktorischen Reizen konfrontiert, was eine schnelle und zuverlässige Duft-Verarbeitung sowohl bei Insekten als auch bei Wirbeltieren erfordert. Im visuellen oder auditorischen System wird sensorischer Eingang durch Parallel-Verarbeitung schneller und effektiver an höhere Gehirnzentren übertragen und verarbeitet. Im olfaktorischen System ist generell und im speziellen über Parallel-Verarbeitung noch wenig bekannt. Die Honigbiene stellt jedoch mit ihrer hoch spezialisierten Duftwahrnehmung und ihrem Duft und Pheromon gesteuerten Verhalten aufgrund ihrer Neuroanatomie einen besonderen Modelorganismus für die Erforschung der Duftverarbeitung und insbesondere der olfaktorischen Parallel-Verarbeitung dar. Honigbienen besitzen „duale olfaktorische Bahnen“, die ausschließlich in Hymenopteren (Bienen, Ameisen, Wespen) als Merkmal ausgeprägt sind. Gebildet werden sie aus zwei spiegelbildlichen Projektions-Neuronen (PN) Ausgangs-Trakten, die das erste olfaktorische Verarbeitungs-Zentrum, den Antennal-Lobus (vergleichbar mit dem Olfaktorischen Bulbus der Wirbeltiere, OB) mit sekundären Verarbeitungszentren, dem Pilzkörper (MB) und dem lateralen Horn (LH) verbinden. Der mediale Antennal-Lobusprotocerebrale Trakt (m-APT) innerviert erst den MB und dann das LH, der laterale Trakt (l-APT) projiziert in umgekehrter Reihenfolge. Der MB ist bei Orientierung, Lernen und Gedächtnis involviert, über die Funktion des LH ist in der Biene noch wenig bekannt. Über die Neuroanatomie und Evolution dieser dualen Bahnen wurde viel geforscht, die Funktion und damit ihre Physiologie sind allerdings noch unzureichend aufgeklärt. Die vorliegende Dissertation beschäftigt sich deshalb mit der Duftverarbeitung im Bienengehirn und im Speziellen mit Parallelverarbeitung in der Olfaktorik. Für die Aufklärung wurde eine neu entwickelte und in dieser Dissertation beschriebene Messmethode etabliert (1. Kapitel). Mit Hilfe dieser Messapparatur (Multi-Unit Recordings) ist es jetzt das erste Mal möglich, hoch-zeitaufgelöst simultan aus beiden Trakten mehrere PNs auf unterschiedliche Düfte hin zu untersuchen. Das 2. Kapitel beschäftigt sich eingehender mit der Analyse von Duftanworten der PN. Die Hauptergebnisse sind, dass beide Trakte auf alle getesteten Düfte regieren, dies aber mit unterschiedlichen Charakteristiken tun. Da gezeigt wurde, dass beide Trakte ähnlichen olfaktorischen Eingang erhalten, die Trakte aber Düfte unterschiedlich verarbeiten, stellen diese Ergebnisse ein erstes Indiz für Parallelverarbeitung im olfaktorischen System der Biene dar. M-APT PN reagieren mit Zeitverzögerung und duftspezifisch, d.h. selektiver auf Düfte. Dagegen reagieren l-APT PN vergleichsweise schneller und duft-unspezifischer auf die in dieser Arbeit verwendeten Düfte. In einigen PN beider Trakte wurde gefunden, dass die PN Duft-Identitäten über duftspezifische Antwort-Latenzen abgebildet werden können. Um Aufschluss über die Gesamtdynamik der PN zu gewinnen, wurden l- und m-APT PN Antworten über weite Duftkonzentrationen (10-6 bis 10-2) hin untersucht (3. Kapitel). Die PN reagierten mit linearen und nicht-linearen Korrelationen. Zudem sind in den meisten Fällen l-APT PN bei schwachen Duftkonzentrationen sensitiver. Die Antwort-Latenz ist zur Duftkonzentration in beiden Trakten negativ-proportional. Alternative Kodierungsmöglichkeiten und die Ausarbeitung der Hypothese, dass die dualen Bahnen eine Koinzidenzverschaltung auf die nächst höheren Neurone, die Kenyon Zellen (KC), bilden könnten, wird im 4. Kapitel behandelt. Dazu zeigen Kreuz-Korrelationsanalysen und synchrone Antwortmuster aus beiden Trakten, dass prinzipiell Düfte auch über Zeit-Kodierung verarbeitet werden können. Generell zeigt sich, dass die dualen olfaktorischen Bahnen eine verbesserte Duftkodierung gegenüber einem Trakt gewährleisten. In einem weiteren Ansatz wurde die alterskorrelierte Plastizität der inhibitorischen GABAergen (gamma-Aminobuttersäure) Innervation im Pilzkörper der Biene während der Adult-Reifung bestimmt (5. Kapitel). Inhibition ist für olfaktorische Kodierung sehr wichtig. Eine fast dreifache Reduktion in der Gesamtmenge von GABA wurde während der Adult-Reifung in beiden Zielregionen der dualen olfaktorischen Bahn gleichermaßen gefunden. Dieser Effekt wurde mit einer insgesamt halbierten GABA Innervierung ebenfalls im visuellen Innervationsgebiet des MB gefunden. Die Ergebnisse passen gut in das derzeitige Verständnis von Adultplastizität der Pilzkörper in der Honigbiene, in denen eine Ausdünnung (Pruning) präsynaptischer Endigungen von PN und ein Auswachsen von KC-Dendriten beschrieben wurde. Aus den neuroanatomischen und physiologischen Eigenschaften der dualen olfaktorischen Bahnen lässt sich schlussfolgern, dass Düfte sowohl über Raten- als auch Zeit-Kodierung bis hin zu Koinzidenz-Verschaltungen verarbeitet werden können. Zudem zeigen derzeitige Arbeiten über analoge Ausgangs-Trakte im OB von Wirbeltieren, dass Parallelverarbeitung im olfaktorischen System ein allgemeines Kodierungsprinzip über weit entfernte Taxa zu sein scheint. KW - Tierphysiologie KW - Geruchssinn KW - Nervennetz KW - Nervenzelle KW - Biene KW - Antennallobus KW - antennal lobe KW - olfaction KW - multi-unit recording KW - Insekten KW - Geruch KW - Physiologie Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-85600 ER - TY - THES A1 - Benadi, Gita T1 - Linking specialisation and stability of plant-pollinator networks T1 - Untersuchung des Zusammenhangs zwischen Spezialisierungsgrad und Stabilität von Pflanzen-Bestäuber-Netzwerken N2 - In this dissertation, I examine the relationship between specialisation and stability of plant-pollinator networks, with a focus on two issues: Diversity maintenance in animal-pollinated plant communities and robustness of plant-pollinator systems against disturbances such as those caused by anthropogenic climate change. Chapter 1 of this thesis provides a general introduction to the concepts of ecological stability and specialisation with a focus on plant-pollinator systems, and a brief outline of the following chapters. Chapters 2-5 each consist of a research article addressing a specific question. While chapters 2 and 3 deal with different aspects of diversity maintenance in animal-pollinated plant communities, chapters 4 and 5 are concerned with the consequences of climate change in the form of temporary disturbances caused by extreme climatic events (chapter 4) and shifts in phenology of plants and pollinators (chapter 5). From a methodological perspective, the first three articles (chapter 2-4) can be grouped together as they all employ mathematical models of plant-pollinator systems, whereas chapter 5 describes an empirical study of plant-pollinator interactions along an altitudinal gradient in the Alps. The final chapter (6) provides a review of current knowledge on each of the two main themes of this thesis and places the findings of the four research articles in the context of related studies. N2 - In dieser Dissertation untersuche ich den Zusammenhang zwischen Spezialisierung und Stabilität von Pflanzen-Bestäuber-Netzwerken. Dabei konzentriere ich mich speziell auf zwei Themengebiete: Die Erhaltung der Diversität in Pflanzengemeinschaften, die durch Tiere bestäubt werden, und die Widerstandsfähigkeit von Pflanzen-Bestäuber-Systemen gegenüber Störungen, wie sie durch den anthropogenen Klimawandel hervorgerufen werden. Kapitel 1 dieser Arbeit gibt eine allgemeine Einführung zu den Konzepten der ökologischen Stabilität und der Spezialisierung mit einem Schwerpunkt auf Pflanzen-Bestäuber-Systemen, und einen kurzen Überblick über die folgenden Kapitel der Arbeit. Kapitel 2-5 bestehen jeweils aus einem wissenschaftlichen Artikel, der eine spezifische Fragestellung untersucht. Während Kapitel 2 und 3 sich mit verschiedenen Aspekten der Erhaltung der Diversität in tierbestäubten Pflanzengemeinschaften befassen, beschäftigen sich Kapitel 4 und 5 mit den Auswirkungen des Klimawandels in Form von temporären Störungen verursacht durch klimatische Extremereignisse (Kapitel 4) und zeitlichen Verschiebungen der Phänologie von Pflanzen und Bestäubern (Kapitel 5). Aus methodologischer Sicht bilden die ersten drei Artikel eine Einheit, da sie alle mathematische Modelle der Populationsdynamik von Pflanzen und Bestäubern verwenden, während Kapitel 5 eine empirische Studie über Pflanzen-Bestäuber-Interaktionen entlang eines Höhengradienten in den Alpen beschreibt. Das letzte Kapitel (6) gibt einen Überblick über den Wissensstand in den beiden zentralen Themengebieten dieser Arbeit und bettet die Ergebnisse der vier Artikel in den Kontext verwandter wissenschaftlicher Arbeiten ein. KW - Theoretische Ökologie KW - Bestäubung KW - Theoretical ecology KW - Plant-animal interactions KW - Pollination KW - Tierökologie Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-85288 ER - TY - THES A1 - Parragh, Nicolaus T1 - Strongly Correlated Multi-Orbital Systems : A Continuous-Time Quantum Monte Carlo Analysis T1 - Stark korrelierte Vielteilchensysteme : Eine Zeitkontinuum-Quanten-Monte-Carlo-Analyse N2 - In this thesis I present results concerning realistic calculations of correlated fermionic many-body systems. One of the main objectives of this work was the implementation of a hybridization expansion continuous-time quantum Monte Carlo (CT-HYB) algorithm and of a flexible self-consistency loop based on the dynamical mean-field theory (DMFT). DMFT enables us to treat strongly correlated electron systems numerically. After the implementation and extensive testing of the program we investigated different problems to answer open questions concerning correlated systems and their numerical treatment. N2 - Die vorliegende Dissertation beschäftigt sich mit der numerischen Berechnung von realistischen stark korrelierten fermionischen Vielteilchensystemen. Die Hauptzielsetzung dieser Arbeit war die Implementierung und das Testen einer zeitkontinuum Quanten Monte Carlo Methode in der Hybridisierungsentwicklung und einer flexiblen selbstkonsistenten Schleife basierend auf der dynamischen Molekularfeldtheorie die es uns ermöglicht solch stark korrelierte Systeme zu berechnen. Nach der Implementierung wurde das Programm ausführlich getest und es wurden Studien an unterschiedlichen Problemen durchgeführt. In Kapitel 1 werde ich das Anderson St¨orstellen-Problem und verschiedene Lösungsansätze für dieses Problem vorstellen. Besonderes Augenmerk werde ich auf den speziellen Lösungsansatz legen den ich implementiert habe. Am Ende des Kapitels werde ich Benchmark-Ergebnisse präsentieren. ... KW - Monte-Carlo-Simulation KW - Elektron KW - Vielteilchen KW - Quanten-Monte-Carlo-Analyse KW - electron KW - many body KW - quantum Monte Carlo KW - Vielteilchensystem KW - Fermionensystem KW - Starke Kopplung Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-85253 ER - TY - THES A1 - Esterlechner, Jasmina T1 - Role of the DREAM complex in mouse embryonic stem cells and identification of ZO-2 as a new LIN9 interacting protein T1 - Die Rolle des DREAM-Komplexes in embryonalen Stammzellen der Maus und Identifikation von ZO-2 als neues LIN9- interagierendes Protein N2 - The DREAM complex plays an important role in regulation of gene expression during the cell cycle. It was previously shown that the DREAM subunits LIN9 and B-MYB are required for early embryonic development and for the maintenance of the inner cell mass in vitro. In this work the effect of LIN9 or B-MYB depletion on embryonic stem cells (ESC) was examined. It demonstrates that LIN9 and B-MYB knock down changes the cell cycle distribution of ESCs and results in an accumulation of cells in G2 and M and in an increase of polyploid cells. By using genome-wide expression studies it was revealed that the depletion of LIN9 leads to downregulation of mitotic genes and to upregulation of differentiation-specific genes. ChIP-on chip experiments determined that mitotic genes are direct targets of LIN9 while lineage specific markers are regulated indirectly. Importantly, depletion of LIN9 does not alter the expression of the pluripotency markers Sox2 and Oct4 and LIN9 depleted ESCs retain alkaline phosphatase activity. I conclude that LIN9 is essential for proliferation and genome stability of ESCs by activating genes with important functions in mitosis and cytokinesis. The exact molecular mechanisms behind this gene activation are still unclear as no DREAM subunit features a catalytically active domain. It is assumed that DREAM interacts with other proteins or co-factors for transcriptional activation. This study discovered potential binding proteins by combining in vivo isotope labeling of proteins with mass spectrometry (MS) and further analysed the identified interaction of the tight junction protein ZO-2 with DREAM which is cell cycle dependent and strongest in S-phase. ZO-2 depletion results in reduced cell proliferation and decreased G1 gene expression. As no G2/M genes, typical DREAM targets, are affected upon ZO-2 knock down, it is unlikely that ZO-2 binding is needed for a functional DREAM complex. However, this work demonstrates that with (MS)-based quantitative proteomics, DREAM interacting proteins can be identified which might help to elucidate the mechanisms underlying DREAM mediated gene activation. N2 - Der DREAM Komplex spielt eine bedeutende Rolle in der Genregulation im Verlauf des Zellzyklus. Es wurde gezeigt, dass die DREAM Untereinheiten LIN9 und B-MYB für die frühe Embryogenese und den in vitro Erhalt der inneren Zellmasse erforderlich sind. In der vorligenden Arbeit wurde die Auswirkung von LIN9 und B-MYB Depletierung auf embryonale Stammzellen untersucht. Es zeigt sich, dass Depletion von LIN9 und B-MYB die Zellzyklus-Verteilung von embryonalen Stammzellen beeinflusst, zur Akkumulation der Zellen in G2 und M Phase und zu erhöhter Polyploidie führt. Genomweite Expressionsstudien ergaben, dass die Verringerung von LIN9 in der Runterregulierung von mitotischen und in der Hochregulierung von differenzierungsspezifischen Genen resultiert. ChIP-on-chip Experimente ermittelten, dass LIN9 Mitosegene als direkte Ziele hat, wohingegen entwicklungslinienspezifische Marker indirekt reguliert werden. Wesentlich ist, dass LIN9 Depletion nicht die Expression der Pluripotenzgene Oct4 oder Sox2 beeinflusst und embryonale Stammzellen ihre Alkaline Phosphatase Aktivität behalten. Daraus lässt schließen, dass LIN9 essentiell für die Proliferation und genomische Stabilität von embryonalen Stammzellen ist, in dem es Gene aktiviert, die wichtige Funktionen in Mitose und Zytokinese ausüben. Der exakte Mechanismus hinter der Genaktivierung ist noch nicht geklärt, da keine DREAM Untereinheit eine katalytisch aktive Domäne aufweist. Vermutlich ist die Interaktion mit weiteren Proteinen oder Co-Faktoren für die Genaktivierung vonnöten. Diese Studie entdeckte mit in vivo Isotop-Markierung von Proteinen und Massenspektrometrie (MS) potentielle Bindungspartner und untersuchte die identifizierte Bindung mit dem Tight Junction Protein ZO-2 genauer. Diese Bindung ist zellzyklus-abhängig und ist am stärksten während der S-Phase. ZO-2 Depletion führt zu reduzierter Zellproliferation und verringerter G1-Genexpression. Da keine G2/M Gene, typische DREAM Ziele, von einer ZO-2 Depletion beeinflusst werden, ist es unwahrscheinlich, dass die ZO-2 Bindung für einen funktionellen DREAM Komplex benötigt wird. Jedoch demonstriert diese Studie, dass mit (MS)-basierender, quantitativer Proteomik DREAM interagierende Proteine identifiziert werden können. Dies ist hilfreich um die Mechanismen hinter der DREAM vermittelten Genaktivierung aufzuklären. KW - Zellzyklus KW - cellcycle KW - Stammzelle KW - Maus KW - stem cells KW - DREAM KW - Genregulation Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-90440 ER - TY - THES A1 - Constantino, Jennifer Anne T1 - Characterization of Novel Magnetic Materials: Ultra-Thin (Ga,Mn)As and Epitaxial-Growth MnSi Thin Films T1 - Charakterisierung von neuen magnetischen Materialien: ultradünne (Ga,Mn)As und epitaktisch gewachsene MnSi Dünnschichten N2 - The study of magnetic phases in spintronic materials is crucial to both our fundamental understanding of magnetic interactions and for finding new effects for future applications. In this thesis, we study the basic electrical and magnetic transport properties of both epitaxially-grown MnSi thin films, a helimagnetic metal only starting to be developed within our group, and parabolic-doped ultra-thin (Ga,Mn)As layers for future studies and applications. N2 - Um einerseits ein fundamentales Verständnis magnetischer Wechselwirkungen zu erhalten und andererseits neue Effekte für zukünftige Anwendungen zu finden, ist es entscheidend, magnetische Phasen spintronischer Materialien zu untersuchen. In dieser Arbeit fokussieren wir uns auf grundlegende elektrische und magnetische Transporteigenschaften zweier Materialsysteme. Das sind zum Ersten ultradünne (Ga,Mn)As Filme mit parabolischen Dotierprofilen, und zum Zweiten epitaktisch gewachsene Dünnschichten aus MnSi, einem helimagnetischen Metal, dessen Entwicklung seit Kurzem in unserer Gruppe vorangetrieben wird. KW - Galliumarsenid KW - Manganarsenide KW - Dünne Schicht KW - Magnetischer Halbleiter KW - Helimagnetism KW - Manganese Silicide KW - Gallium Manganese Arsenide KW - Ferromagnetic Semiconductors KW - Magnetic Anisotropy KW - Mangansilicide KW - Magnetotransport KW - Mangan KW - Halbleiter KW - Herstellung Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-90578 ER - TY - THES A1 - Banaszek, Agnes T1 - Dual Antigen-Restricted Complementation of a Two-Part Trispecific Antibody for Targeted Immunotherapy of Blood Cancer T1 - Von zwei Antigenen abhängige Komplementierung eines zweiteiligen trispezifischen Antikörpers zur gezielten Immuntherapie von Blutkrebs N2 - Cancer cells frequently escape from immune surveillance by down-regulating two important components of the immune defence: antigen-presenting MHC and costimulatory molecules. Therefore several novel anti-tumour compounds that aim to assist the immune system in recognising and fighting cancer are currently under development. Recombinant bispecific antibodies represent one group of such novel therapeutics. They target two different antigens and recruit cytotoxic effector cells to tumour cells. For cancer immunotherapy, bispecific T cell-engaging antibodies are already well characterised. These antibodies target a tumour-associated antigen and CD3ε, the constant molecule of the T cell receptor complex. On the one hand, this study presents the development of a bispecific antibody targeting CD3ε and the rhabdomyosarcoma-associated fetal acetylcholine receptor. On the other hand, it describes a novel two-part trispecific antibody format for the treatment of leukaemia and other haematological malignancies in the context of haematopoietic stem cell transplantation (HSCT). For HSCT, an HLA-identical donor is preferred, but very rarely available. In an HLA-mismatched setting, the HLA disparity could be exploited for targeted cancer treatment. In the present study, a two-part trispecific HLA-A2 × CD45 × CD3 antibody was developed for potential cases in which the patient is HLA-A2-positive, but the donor is not. This holds true for about half the cases in Germany, since HLA-A2 is the most common HLA molecule found here. Combinatorial targeting of HLA-A2 and the leucocyte-common antigen CD45 allows for highly specific dual-antigen restricted tumour targeting. More precisely, two single-chain antibody constructs were developed: i) a single-chain variable fragment (scFv) specific for HLA-A2, and ii) a scFv against CD45, both linked to the VL and the VH domain of a CD3ε-specific antibody, respectively. It turned out that, after the concomitant binding of these constructs to the same HLA-A2- and CD45-expressing cell, the unpaired variable domains of a CD3ε-specific antibody assembled to a functional scFv. In a therapeutic situation, this assembly should exclusively occur on the recipient’s blood cancer cells, leading to T cell-mediated cancer cell destruction. In this way, a relapse of disease might be prevented, and standard therapy (radiation and chemotherapy) might be omitted. For both approaches, the antibody constructs were periplasmically expressed in E. coli, purified via His tag, and biochemically characterised. Their binding to the respective targets was proven by flow cytometry. The stimulatory properties of the antibodies were assayed by measuring IL-2 release after incubation with T cells and antigen-expressing target cells. Both the bispecific antibody against rhabdomyosarcoma and the assembled trispecific antibody against blood cancer mediated T-cell activation in a concentration-dependent manner at nanomolar concentrations. For the trispecific antibody, this effect indeed proved to be dual antigen-restricted, as it could be blocked by prior incubation of either HLA-A2- or CD45-specific scFv and did not occur on single-positive (CD45+) or double-negative (HLA-A2- CD45-) target cells. Furthermore, antibodies from both approaches recruited T cells for tumour cell destruction in vitro. N2 - Krebszellen entgehen der Immunüberwachung oftmals dadurch, dass sie zwei wichtige Komponenten der Immunabwehr, nämlich antigenpräsentierende MHC- und kostimulatorische Moleküle, herunter regeln. Zurzeit befindet sich daher eine Reihe neuartiger Anti-Krebs-Substanzen in der Entwicklung, die darauf abzielen, das Immunsystem beim Erkennen und Bekämpfen von Krebs zu unterstützen. Rekombinante bispezifische Antikörper stellen eine Gruppe solch neuartiger Therapeutika dar. Sie erkennen zwei unterschiedliche Antigene und rekrutieren gezielt zytotoxische Effektorzellen zu Tumorzellen. Zur Krebsimmuntherapie sind BiTE-Antikörper (bispecific T cell engager) bereits gut untersucht. Diese Antikörper sind gegen ein tumorassoziiertes Antigen sowie gegen CD3ε, das konstante Molekül des T Zell-Rezeptor-Komplexes, gerichtet. Diese Arbeit beschreibt zum einen die Entwicklung eines bispezifischen Antikörpers, der CD3ε und den mit Rhabdomyosarkom assoziierten fetalen Acetylcholinrezeptor erkennt. Zum anderen präsentiert sie ein neues, zweiteiliges trispezifisches Antikörperformat, das zur Behandlung von Leukämie und anderen bösartigen Erkrankungen des blutbildenden Systems im Zusammenhang mit hämatopoetischer Stammzelltransplantation (HSZT) genutzt werden könnte. Für eine HSZT wird ein HLA-identischer Spender bevorzugt. Dieser steht jedoch nur sehr selten zur Verfügung. In Fällen mit nur einer Unstimmigkeit in den HLA-Merkmalen zwischen Patient und Spender könnte diese HLA-Unstimmigkeit nun zur gezielten Krebsbehandlung ausgenutzt werden. In dieser Arbeit wurde ein trispezifisches HLA-A2 × CD45 × CD3 Antikörperkonstrukt speziell für solche Fälle entwickelt, in denen der Patient HLA-A2-positiv ist, der Spender jedoch nicht. Dies trifft in Deutschland auf ungefähr die Hälfte aller Fälle zu, da HLA-A2 hier als häufigstes HLA-Molekül vorkommt. Mit der Kombination aus HLA-A2 und dem Pan-Leukozytenmarker CD45 (leucocyte-common antigen) als Ziel, wird eine hochspezifische, von zwei Antigenen abhängige, zielgerichtete Tumoransteuerung (tumour targeting) möglich. Genauer gesagt wurden zwei Einzelketten-Antikörperkonstrukte entwickelt: i) ein HLA A2-spezifisches single-chain variable fragment (scFv) und ii) ein CD45-spezifisches scFv, jeweils verbunden mit der VL- bzw. der VH-Domäne eines CD3ε-spezifischen Antikörpers. Es stellte sich heraus, dass nach gleichzeitiger Bindung der beiden Konstrukte an dieselbe HLA-A2- und CD45-exprimierende Zelle sich die beiden einzelnen, ungepaarten variablen Domänen eines CD3ε-spezifischen Antikörpers zu einem funktionellen scFv zusammenfügen. Dieses Zusammenfügen sollte in einer therapeutischen Situation ausschließlich auf den Blutkrebszellen des Empfängers geschehen, was zur T-Zell-vermittelten Zerstörung der Krebszellen führen würde. Auf diese Weise könnte ein Rückfall der Erkrankung vermieden und eventuell sogar auf die Standardtherapie (Bestrahlung und Chemotherapie) verzichtet werden. Für die beiden beschriebenen Ansätze wurden die Antikörperkonstrukte periplasmatisch in E. coli exprimiert, über einen His-Tag aufgereinigt und biochemisch charakterisiert. Ihre Bindung an die jeweiligen Zielantigene wurde mittels Durchflusszytometrie nachgewiesen. Die stimulatorischen Eigenschaften der Antikörper wurden durch eine Messung der IL-2-Freisetzung nach Inkubation zusammen mit T-Zellen und antigenexprimierenden Zielzellen untersucht. Sowohl der gegen Rhabdomyosarkom gerichtete BiTE-Antikörper, als auch der zusammengefügte trispezifische Antikörper gegen Blutkrebs vermittelten konzentrationsabhängig eine T Zellaktivierung bei nanomolaren Konzentrationen. Für den trispezifischen Antikörper erwies sich dieser Effekt tatsächlich als abhängig von zwei Antigenen, da er durch eine vorausgehende Inkubation mit entweder einem HLA-A2- oder einem CD45-spezifischen scFv-Fragment geblockt werden konnte und nicht auf Zellen auftrat, die nur ein Antigen (CD45+) oder keins von beiden (HLA-A2- CD45-) tragen. Darüber hinaus rekrutierten die Antikörper beider Ansätze T-Zellen zur Zerstörung von Tumorzellen in vitro. KW - Immuntherapie KW - Antikörper KW - Cytotoxischer Antikörper KW - Leukämie KW - Rhabdomyosarkom KW - bispecific antibodies KW - antibody engineering KW - cancer immunotherapy KW - rekombinante Antikörper KW - bispezifische antikörper Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-90174 ER - TY - THES A1 - Dürrbeck, Nina T1 - Photoinduced Charge-Transfer Processes in Redox Cascades based on Triarylamine Donors and the Perchlorinated Triphenylmethyl Radical Acceptor T1 - Photoinduzierte Ladungstransferprozesse in Redox-Kaskaden basierend auf Triarylamin-Donoren und dem perchlorierten Triphenylmethyl-Radikal-Akzeptor N2 - In this work, a series of redox cascades was synthesised and investigated in view of their photophysical and electrochemical properties. The cascades are based on a perchlorinated triphenylmethyl radical acceptor and two triarylamine donors. Absorption spectra showed the presence of charge-transfer bands in the NIR range of the spectra, which pointed to the population of a charge-transfer state between a triarylamine donor and the radical acceptor. A weak to moderate emission in the NIR range of the spectra was observed for all compounds in cyclohexane. Spectroelectrochemical measurements were used to investigate the characteristic spectral features of the oxidised and reduced species of all compounds. Transient absorption spectra in the ns- and fs-time regime revealed an additional hole transfer in the cascades between the triarylamine donors, resulting in a charge-separated state. Charge-separation and -recombination processes were found to be located in the ps-time regime. N2 - Im Rahmen dieser Arbeit wurde eine Reihe von Redox-Kaskaden synthetisiert und hinsichtlich ihrer spektroskopischen und elektrochemischen Eigenschaften untersucht. Die Kaskaden basieren auf einem perchlorierten Triphenylmethyl-Radikal-Akzeptor und zwei Triarylamin-Donoren. Absorptionsspektren zeigten das Vorhandensein von Ladungstransferbanden im NIR-Bereich des Spektrums, welche auf die Bevölkerung eines Ladungstransferzustands zwischen einem Triarylamin-Donor und dem perchlorierten Akzeptor hinweisen. Eine schwache bis mäßige Fluoreszenz ließ sich für alle Verbindungen in Cyclohexan im NIR-Bereich beobachten. Spektroelektrochemische Messungen kamen zur Untersuchung der oxidierten und reduzierten Spezies aller Verbindungen zum Einsatz. Transiente Absorption im ns- bis fs-Zeitbereich zeigte einen zusätzlichen Lochtransfer zwischen den Triarylaminen, welcher zur Ausbildung eines ladungsseparierten Zustands führte. Alle Ladungsseparierungs- und Rekombinationsprozesse fanden im ps-Bereich statt. KW - Ladungstransfer KW - Donator KW - Akzeptor KW - Redox-Kaskade KW - Transiente Absorption KW - charge transfer KW - redox cascade KW - acceptor KW - transient absorption KW - Donor Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-90078 ER - TY - THES A1 - Rauh, Daniel T1 - Impact of Charge Carrier Density and Trap States on the Open Circuit Voltage and the Polaron Recombination in Organic Solar Cells T1 - Einfluss der Ladungsträgerdichte und Störstellen auf die Leerlaufspannung und die Polaronenrekombination in organischen Solarzellen N2 - The focus of this work is studying recombination mechanisms occurring in organic solar cells, as well as their impact on one of their most important parameters — the open circuit voltage Voc. Firstly, the relationship between Voc and the respective charge carrier density n in the active layer under open circuit conditions is analyzed. Therefor, a model after Shockley for the open circuit voltage is used, whose validity is proven with the aid of fits to the measured data. Thereby, it is emphasized that the equation is only valid under special conditions. In the used reference system P3HT:PC61BM the fits are in agreement with the measurement data only in the range of high temperatures (150 - 300 K), where Voc increases linearly with decreasing temperature. At lower temperatures (50 – 150 K), the experiment shows a saturation of Voc. This saturation cannot be explained with the model by the measured falling charge carrier density with decreasing temperatures. In this temperature range Voc is not directly related to the intrinsic properties of the active layer. Voc saturation is due to injection energy barriers at the contacts, which is ascertained by macroscopic simulations. Furthermore, it is observed that Voc in the case of saturation is equivalent to the so-called built-in potential. The difference between the built-in potential and the energy gap corresponds thereby to the sum of the energy barriers at both contacts. With the knowledge of the Voc(n) dependency for not contact limited solar cells, it is possible to investigate the recombination mechanisms of charge carriers in the active layer. For Langevin recombination the recombination rate is Rn2 (recombination order RO = 2), for Shockley-Read-Hall (SRH) Rn1 (RO=1); in various publications RO higher than two is reported with two main explanations. 1: Trap states for charge carriers exist in the respective separated phases, i.e. electrons in the acceptor phase and holes in the donor phase, which leads to a delayed recombination of the charge carriers at the interface of both phases and finally to an apparent recombination order higher than 2. 2: The enhanced R(n) dependency is attributed to the so called recombination prefactor, which again is dependent from n dependent mobility µ. It is shown that for the system P3HT:PC61BM at room temperature the µ(n) dependency does nearly completely explain the higher RO but not at lower temperatures which in this case supports the first explanation. In the material system PTB7:PC71BM the increased RO cannot be explained by the µ(n) dependency even at room temperature. To support the importance of trap states in combination with a phase separation for the explanation of the enhanced RO, additional trap states were incorporated in the solar cells to investigate their influence on the recombination mechanisms. To achieve this, P3HT:PC61BM solar cells were exposed to synthetic air (in the dark and under illumination) or TCNQ was added in small concentrations to the active layer which act as electron traps. For the oxygen degraded solar cell the recombination order is determined by a combination of open Voc-transients and Voc(n) measurements. Thereby, a continuous increase of the recombination order from 2.4 to more than 5 is observed with higher degradation times. By the evaluation of the ideality factor it can be shown that the impact of SRH recombination is increasing with higher trap concentration in relation to Langevin recombination. A similar picture is revealed for solar cells with TCNQ as extrinsic trap states. Finally, a phenomenon called s-shaped IV-curves is investigated, which can sometimes occur for solar cells under illumination. As course of this a reduced surface recombination velocity can be found. Experimentally, the solar cells were fabricated using a special plasma treatment of the ITO contact. The measured IV-curves of such solar cells are reproduced by macroscopic simulations, where the surface recombination velocity is reduced. Hereby, it has to be distinguished between the surface recombination of majority and minority charge carriers at the respective contacts. The theory can be experimentally confirmed by illumination level dependent IV-curves as well as short circuit current density and open circuit voltage transients. N2 - Im Fokus der vorliegenden Arbeit liegen die Rekombinationsmechanismen welche in organischen Solarzellen vorkommen, sowie deren Einfluss auf eine der wichtigsten charakteristischen Kenngrößen dieser - der Leerlaufspannung Voc. Zuerst wird der Zusammenhang zwischen Voc und zugehöriger Ladungsträgerdichte n in der aktiven Schicht unter Leerlaufbedingungen untersucht. Dazu wird ein Modell nach Shockley für die Leerlaufspannung verwendet, dessen Gültigkeit mit Hilfe von Fits an die Messdaten überprüft wird. Dabei stellt sich heraus, dass dieses nur für bestimmte Rahmenbedingungen gültig ist. Im verwendeten Referenzsystem P3HT:PC61BM stimmen die Fits nur im Bereich höherer Temperaturen (150 - 300 K), in denen Voc linear mit sinkenden Temperaturen steigt, mit den Messwerten überein. Im Bereich tieferer Temperaturen (50 - 150 K) stellt sich experimentell eine Sättigung von Voc ein. Diese Sättigung kann mit der gemessenen fallenden Ladungsträgerdichten mit sinkender Temperatur laut Modell nicht erklärt werden. Voc steht in diesem Temperaturbereich deshalb in keinem direkten Zusammenhang zu den intrinsischen Eigenschaften der aktiven Schicht. Die Ursache der Sättigung sind Energiebarrieren an den Kontakten, was mit Hilfe von makroskopischen Simulationen nachgewiesen werden kann. Weiterhin wird festgestellt, dass Voc im Sättigungsfall genau dem sogenannten eingebauten Potential entspricht. Die Differenz zwischen dem eingebauten Potential und der Bandlücke entspricht dabei der Summe der Energiebarrieren an beiden Kontakten. Mit der Erkenntnis, dass für nicht kontaktlimitierte Solarzellen eine Voc(n) Abhängigkeit besteht, kann man sich den Rekombinationsmechanismen in der aktiven Schicht widmen. Für Langevin Rekombination ist die Rekombinstionsrate Rn2 (Rekombinationsordnung RO = 2), für Shockley-Read-Hall (SRH) Rn1 (RO=1); experimentell wird in der Literatur aber von RO größer 2 berichtet wofür zwei Erklärungen existieren. 1.: Es gibt Fallenzustände für Ladungsträger in den entsprechenden separaten Phasen, d.h. Elektronen in der Akzeptorphase und Löcher in der Donatorphase, was in einer verzögerten Rekombination der Ladungsträger an der Grenzfläche beider Phasen führt und damit zu einer höheren RO als 2. 2.: Die erhöhte R(n)-Abhängigkeit wird dem sogenannten Rekombinationsvorfaktor zugeschrieben, welcher wiederum von der n-abhängigen Mobilität µ abhängt. Es wird gezeigt, dass für das System P3HT:PC61BM bei Raumtemperatur der µ(n) Verlauf fast komplett die erhöhte RO erklären kann, allerding nicht bei tieferen Temperaturen welches dort die erste Erklärung stützt. Im Materialsystem PTB7:PC71BM ist schon für Raumtemperatur die erhöhte RO nicht durch den µ(n) Verlauf erklärbar. Um zu untermauern, dass Störstellen in Kombination mit einer Phasenseparation für die erhöhte RO verantwortlich sind, wurden Störstellen in Solarzellen eingebaut um deren Einfluss auf die Rekombinationsmechanismen zu untersuchen. Dazu wurden P3HT:PC61BM Solarzellen zum einen synthetischer Luft ausgesetzt (im Dunkeln und unter Beleuchtung) zum anderen der aktiven Schicht in geringen Konzentrationen TCNQ beigefügt, welches als Elektronenstörstelle fungiert. Für die O2 degradierte Solarzelle wird die RO aus einer Kombination von Voc-Transienten und Voc(n) Messungen bestimmt. Dabei kann mit erhöhter Degradation ein kontinuierlicher Anstieg der RO von 2.4 auf mehr als 5 beobachtet werden. Durch die Auswertung des Idealitätsfaktors kann gezeigt werden, dass der Einfluss der SRH Rekombination in Relation zur Langevin Rekombination mit erhöhter Störstellenkonzentration zunimmt. Ein ähnliches Bild ergibt sich für die Solarzellen mit TCNQ als extrinsische Störstellen. Zuletzt wird das Phänomen s-förmiger Strom-Spannungs-Kennlinien untersucht, welches manchmal für Solarzellen unter Beleuchtung auftritt. Als Ursache kann eine reduzierte Oberflächenrekombinationsgeschwindigkeit ausgemacht werden. Experimentell wurden die Solarzellen mit einer speziellen Plasmabehandlung des ITO Kontaktes hergestellt. Die gemessenen IV-Kennlinien solcher Solarzellen können anhand von makroskopischen Simulationen nachgebildet werden, indem darin die Oberflächenrekombinationsgeschwindigkeit reduziert wird, wobei man dabei die Oberflächenrekombination von Majoritäts- bzw. Minoritätsladungsträgern an den entsprechenden Kontakten unterscheiden muss. Experimentell untermauert werden kann die Theorie anhand von lichtleistungsabhängigen IV-Kurven bzw. Transienten der Kurzschlussstromdichte und der Leerlaufspannung. KW - Organische Solarzelle KW - organische Solarzellen KW - Leerlaufspannung KW - Störstellen KW - recombination KW - organic solar cells KW - open circuit voltage KW - trap states KW - Fotovoltaik KW - Organischer Halbleiter KW - Rekombination Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-90083 ER - TY - THES A1 - Wagenpfahl, Alexander Johannes T1 - Numerical simulations on limitations and optimization strategies of organic solar cells T1 - Numerische Simulationen von Limitierungen und Optimierungsstrategien organischer Solarzellen N2 - Continuously increasing energy prices have considerably influenced the cost of living over the last decades. At the same time increasingly extreme weather conditions, drought-filled summers as well as autumns and winters with heavier rainfall and worsening storms have been reported. These are possibly the harbingers of the expected approaching global climate change. Considering the depletability of fossil energy sources and a rising distrust in nuclear power, investigations into new and innovative renewable energy sources are necessary to prepare for the coming future. In addition to wind, hydro and biomass technologies, electricity generated by the direct conversion of incident sunlight is one of the most promising approaches. Since the syntheses and detailed studies of organic semiconducting polymers and fullerenes were intensified, a new kind of solar cell fabrication became conceivable. In addition to classical vacuum deposition techniques, organic cells were now also able to be processed from a solution, even on flexible substrates like plastic, fabric or paper. An organic solar cell represents a complex electrical device influenced for instance by light interference for charge carrier generation. Also charge carrier recombination and transport mechanisms are important to its performance. In accordance to Coulomb interaction, this results in a specific distribution of the charge carriers and the electric field, which finally yield the measured current-voltage characteristics. Changes of certain parameters result in a complex response in the investigated device due to interactions between the physical processes. Consequently, it is necessary to find a way to generally predict the response of such a device to temperature changes for example. In this work, a numerical, one-dimensional simulation has been developed based on the drift-diffusion equations for electrons, holes and excitons. The generation and recombination rates of the single species are defined according to a detailed balance approach. The Coulomb interaction between the single charge carriers is considered through the Poisson equation. An analytically non-solvable differential equation system is consequently set-up. With numerical approaches, valid solutions describing the macroscopic processes in organic solar cells can be found. An additional optical simulation is used to determine the spatially resolved charge carrier generation rates due to interference. Concepts regarding organic semiconductors and solar cells are introduced in the first part of this work. All chapters are based on previous ones and logically outline the basic physics, device architectures, models of charge carrier generation and recombination as well as the mathematic and numerical approaches to obtain valid simulation results. In the second part, the simulation is used to elaborate issues of current interest in organic solar cell research. This includes a basic understanding of how the open circuit voltage is generated and which processes limit its value. S-shaped current-voltage characteristics are explained assigning finite surface recombination velocities at metal electrodes piling-up local space charges. The power conversion efficiency is identified as a trade-off between charge carrier accumulation and charge extraction. This leads to an optimum of the power conversion efficiency at moderate to high charge carrier mobilities. Differences between recombination rates determined by different interpretations of identical experimental results are assigned to a spatially inhomogeneous recombination, relevant for almost all low mobility semiconductor devices. N2 - Stetig steigende Preise für Energie haben die Lebenshaltungskosten in Deutschland über die letzten Jahrzehnte maßgeblich beeinflusst. Gleichzeitig werden scheinbar extremere Wetterbedingungen, dürrere Sommer, ebenso wie regen und sturmreichere Winter aufgezeichnet. Dies könnten bereits heute die Vorboten eines kommenden, globalen Klimawandels sein. Berücksichtigt man die Endlichkeit fossiler Energieträger und die wachsende Ablehnung gegenüber nuklearer Energieerzeugung, führt kein Weg an einer genaueren Erforschung innovativer, erneuerbarer Energiequellen vorbei. Neben Wind- und Wasserkraft stellt die direkte Umwandlung von Sonnenlicht in elektrischen Strom einen der erfolgversprechendsten Ansätze dar. Seit Beginn der Synthese und der genaueren Untersuchungen organischer, halbleitender Polymere und Fullerene innerhalb der letzten Jahre, wurde eine neue Arte der Solarzellenherstellung, neben den bereits etablierten Technologien, denkbar. Zusätzlich zu klassischen Aufdampfverfahren können Solarzellen aus organischen Materialien in Lösung hergestellt und auf verschiedenartigste Materialien wie Plastik, Stoff oder Papier aufgebracht werden. Aufgrund der Unordnung in den aktiven Schichten verhalten sich solche Solarzellen jedoch anders als solche aus anorganischen Materialien. Eine organische Solarzelle ist ein komplexes elektrisches Bauteil, welches durch eine Anzahl physikalischer Effekte maßgeblich beeinflusst wird. So ist, beispielsweise, die Verteilung erzeugter Ladungsträger durch optische Interferenzeffekte bestimmt. Ladungstransport und Ladungsträgerrekombination stellen weitere Einflussfaktoren dar. Die experimentell gemessenen Strom-Spannungs-Kennlinien sind somit stets makroskopische Kombination mehrerer Effekte. Änderungen einzelner Parameter führen zu einer komplexen Änderung des elektrischen Verhaltens des Bauteils. Folgerichtig ist es notwendig, ein Modell zu entwickeln, welches das Verhalten organischer Solarzellen bei sich ändernden Umgebungsbedingungen, allgemeingültig vorhersagen kann. Im Rahmen dieser Arbeit wurde, zu diesem Zweck, eine eindimensionale, numerische Simulation entwickelt. Basierend auf Drift- und Diffusionsgleichungen für Elektronen, Löcher und Exzitonen kann der Ladungstransport in organischen Halbleitern beschrieben werden. Benötigte Generations- und Rekombinationsraten werden durch entsprechende Ratengleichungen bestimmt. Über die Poisson-Gleichung wird zudem das auftretende elektrische Feld innerhalb der Solarzelle berücksichtigt. Das resultierende differentielle Gleichungssystem ist jedoch nicht analytisch lösbar. Nur mit Hilfe spezieller numerischer Methoden, können gültige Lösungen gefunden werden. Hiermit kann das Verhalten organischer Solarzellen sehr gut beschrieben. Eine zusätzliche optische Simulation kann dazu benutzt werden, optische Interferenzeffekte zu berücksichtigen. Im des ersten Teiles dieser Arbeit werden Methoden und Modellvorstellungen für Prozesse in organischer Solarzellen vorgestellt. Die Kapitel bauen aufeinander auf und gehen nacheinander auf die grundlegende Physik, die Bauteilarchitektur, die Modelle der Ladungsträgergeneration und -rekombination, ebenso wie auf die benötigten mathematischen und numerischen Methoden ein. Beiträge zur aktuellen Forschung werden im zweiten Abschnitt vorgestellt. Diese Umfassen ein grundlegendes Verständnis der offenen Klemmspannung organischer Solarzellen. Diese wird entweder durch Oberflächenrekombination an den Elektroden oder durch Injektionsbarrieren limitiert. S-förmige Verformungen von gemessenen und simulierten Strom-Spannungs-Kennlinien konnten durch endliche Oberflächenrekombinationsgeschwindigkeiten erklärt werden. Aufgrund verminderter Extraktions- und Injektionseigenschaften entsteht eine spannungsabhängige Raumladungszone, welche diese oft beobachtete Verformung verursacht. Der Wirkungsgrad organischer Solarzellen konnte als Kompromiss zwischen Ladungsträgeranhäufung und -extraktion im Bauteil identifiziert werden. Dies führt letztendlich zu einem Optimum der Solarzelleneffizienz bei moderaten bis hohen Ladungsträgerbeweglichkeiten. Abweichungen experimentell unterschiedlich bestimmter Rekombinationsraten konnten auf eine räumlich inhomogene Verteilung der Ladungsträgerrekombination zurückgeführt werden. Diese wird durch selektive Kontakte erzeugt und ist für alle halbleitenden Bauelemente mit niedriger Mobilität relevant. KW - Organische Solarzelle KW - Fotovoltaik KW - Organischer Halbleiter KW - s-shape KW - Doppeldiode KW - Simulation KW - Solarzelle KW - Rekombination KW - Strom-Spannungs-Kennlinie Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-90119 N1 - zu ergänzende PACS-Nummern wären: 88.40.jr und 81.05.Fb (Quelle: http://www.aip.org/publishing/pacs/pacs-alphabetical-index) ER - TY - THES A1 - Engelhardt [geb. Christiansen], Frauke T1 - Synaptic Connectivity in the Mushroom Body Calyx of Drosophila melanogaster T1 - Synaptische Konnektivität im Pilzkörper Kalyx in Drosophila melanogaster N2 - Learning and memory is considered to require synaptic plasticity at presynaptic specializations of neurons. Kenyon cells are the intrinsic neurons of the primary olfactory learning center in the brain of arthropods – the mushroom body neuropils. An olfactory mushroom body memory trace is supposed to be located at the presynapses of Kenyon cells. In the calyx, a sub-compartment of the mushroom bodies, Kenyon cell dendrites receive olfactory input provided via projection neurons. Their output synapses, however, were thought to reside exclusively along their axonal projections outside the calyx, in the mushroom body lobes. By means of high-resolution imaging and with novel transgenic tools, we showed that the calyx of the fruit fly Drosophila melanogaster also comprised Kenyon cell presynapses. At these presynapses, synaptic vesicles were present, which were capable of neurotransmitter release upon stimulation. In addition, the newly identified Kenyon cell presynapses shared similarities with most other presynapses: their active zones, the sites of vesicle fusion, contained the proteins Bruchpilot and Syd-1. These proteins are part of the cytomatrix at the active zone, a scaffold controlling synaptic vesicle endo- and exocytosis. Kenyon cell presynapses were present in γ- and α/β-type KCs but not in α/β-type Kenyon cells. The newly identified Kenyon cell derived presynapses in the calyx are candidate sites for an olfactory associative memory trace. We hypothesize that, as in mammals, recurrent neuronal activity might operate for memory retrieval in the fly olfactory system. Moreover, we present evidence for structural synaptic plasticity in the mushroom body calyx. This is the first demonstration of synaptic plasticity in the central nervous system of Drosophila melanogaster. The volume of the mushroom body calyx can change according to changes in the environment. Also size and numbers of microglomeruli - sub-structures of the calyx, at which projection neurons contact Kenyon cells – can change. We investigated the synapses within the microglomeruli in detail by using new transgenic tools for visualizing presynaptic active zones and postsynaptic densities. Here, we could show, by disruption of the projection neuron - Kenyon cell circuit, that synapses of microglomeruli were subject to activity-dependent synaptic plasticity. Projection neurons that could not generate action potentials compensated their functional limitation by increasing the number of active zones per microglomerulus. Moreover, they built more and enlarged microglomeruli. Our data provide clear evidence for an activity-induced, structural synaptic plasticity as well as for the activity-induced reorganization of the olfactory circuitry in the mushroom body calyx. N2 - Synaptische Plastizität an den präsynaptischen Spezialisierungen von Neuronen sind nach allgemeinem Verständnis die Grundlage für Lern- und Gedächtnisprozesse. Kenyon Zellen sind die intrinsischen Zellen des Zentrums für olfaktorisches Lernen im Gehirn von Arthropoden – den Pilzkörper Neuropilen. An den Präsynapsen der Kenyon Zellen wird eine olfaktorische Gedächtnisspur vermutet. Im Kalyx, einer Substruktur der Pilzkörper, erhalten die Kenyon Zell Dendriten ihren olfaktorischen Input durch Projektionsneurone. Ihre Präsynapsen wiederum befinden sich ausschließlich in ihren axonalen Kompartimenten außerhalb des Kalyx, nämlich in den Loben der Pilzkörper. Mit Hilfe von hochauflösenden bildgebenden Techniken und neuen transgenen Methoden, ist es uns in der Fruchtfliege Drosophila melanogaster gelungen, Kenyon Zell Präsynapsen im Kalyx zu identifizieren. Diese Präsynapsen enthalten synaptische Vesikel, die nach Stimulation ihren Inhalt freisetzen können. Sie weisen noch weitere Gemeinsamkeiten mit den meisten anderen Präsynapsen auf: Ihre Aktiven Zonen, die Orte der Transmitterfreisetzung, enthalten die Proteine Bruchpilot und Syd-1. Diese sind Teil der Zytomatrix an der Aktiven Zone, ein Proteingerüst das Endo- und Exozytose der synaptischen Vesikel kontrolliert. Die Präsynapsen im Kalyx wurden in γ- and α/β-Typ Kenyon Zellen aber nicht in α/β-Typ Kenyon Zellen gefunden. Die neu identifizierten Kenyon Zell Präsynapsen beherbergen potentiell eine Gedächtnisspur für olfaktorisch assoziatives Lernen. Möglicherweise wird im olfaktorischen Nervensystem von Fruchtfliegen rücklaufende neuronale Aktivität benötigt, um Gedächtnis abzurufen, so wie es auch für Säuger beschrieben ist. Darüber hinaus zeigen wir synaptische Plastizität im Kalyx. Dies ist die erste Beschreibung überhaupt von synaptischer Plastizität im zentralen Nervensystem von Drosophila melanogaster. Das Volumen des Kalyx kann sich als Antwort auf äußere Einflüsse verändern. Genauso auch Größe und Anzahl der Mikroglomeruli, Substrukturen des Kalyx, in denen Projektionsneurone und Kenyon Zellen aufeinander treffen. Wir untersuchten die Synapsen in Mikroglomeruli detailliert, mithilfe von neuen transgenen Methoden, die es erlauben, präsynaptische Aktive Zonen sowie Postsynaptische Spezialisierungen zu visualisieren. Mittels Beeinträchtigung der Kommunikation zwischen Projektionsneuronen und Kenyon Zellen, konnten wir synaptische Plastizität in Mikroglomeruli zeigen. Projektionsneurone, die nicht in der Lage waren, Aktionspotentiale zu erzeugen, kompensierten ihre funktionelle Einschränkung durch den vermehrten Einbau von Aktiven Zonen in Mikroglomeruli. Außerdem produzierten sie mehr und vergrößerte Mikroglomeruli. Unsere Daten zeigen deutlich eine aktivitätsinduzierte Veränderung des olfaktorischen neuronalen Netzes, sowie strukturelle synaptische Plastizität im Kalyx. KW - Taufliege KW - Pilzkörper KW - Drosophila melanogaster KW - mushroom body KW - calyx KW - Geruch KW - Lernen KW - Gedächtnis KW - Kalyx Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-85058 ER - TY - THES A1 - Lücking, Thomas T1 - Acquisition Behavior in High-Technology Industries – The Role of Product Diversification, Technological Change, and IP Protection T1 - Akquisitionsverhalten in Hochtechnologiebranchen – Die Rolle von Produktdiversifikation, technologischem Wandel und dem Schutz von geistigem Eigentum N2 - Frequent acquisition activities in high-technology industries are due to the intense competition, driven by short product life cycles, more complex products/services and prevalent network effects. This dissertation theoretically analyzes the circumstances leading to technology-driven acquisitions and empirically tests these within a clearly defined market scenario. N2 - Die zahlreichen Unternehmensakquisitionen in Hochtechnologiebranchen sind einem intensiven Wettbewerb geschuldet, der durch immer kürzere Produktlebenszyklen, komplexere Produktdesigns und extreme Netzwerkeffekte geprägt ist. Die vorliegende Forschungsarbeit hat zum Ziel, die genauen Umstände, die zu technologiegetriebenen Akquisitionen führen, in Form von relevanten erklärenden Einflussfaktoren theoretisch herzuleiten und empirisch zu untersuchen. KW - Mergers and Acquisitions KW - Technologieunternehmen KW - Hochtechnologie KW - Unternehmensakquisition KW - Produktdiversifikation KW - High-technology KW - acquisition behavior KW - product diversification KW - strategic management KW - organizational science KW - Spitzentechnologie KW - Strategisches Management KW - Organisationstheorie Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-85065 ER - TY - THES A1 - Andlauer, Till Felix Malte T1 - Structural and Functional Diversity of Synapses in the Drosophila CNS T1 - Strukturelle und funktionale Diversität von Synapsen im ZNS von Drosophila N2 - Large-scale anatomical and functional analyses of the connectivity in both invertebrate and mammalian brains have gained intense attention in recent years. At the same time, the understanding of synapses on a molecular level still lacks behind. We have only begun to unravel the basic mechanisms of how the most important synaptic proteins regulate release and reception of neurotransmitter molecules, as well as changes of synaptic strength. Furthermore, little is known regarding the stoichiometry of presynaptic proteins at different synapses within an organism. An assessment of these characteristics would certainly promote our comprehension of the properties of different synapse types. Presynaptic proteins directly influence, for example, the probability of neurotransmitter release as well as mechanisms for short-term plasticity. We have examined the strength of expression of several presynaptic proteins at different synapse types in the central nervous system of Drosophila melanogaster using immunohistochemistry. Clear differences in the relative abundances of the proteins were obvious on different levels: variations in staining intensities appeared from the neuropil to the synaptic level. In order to quantify these differences, we have developed a ratiometric analysis of antibody stainings. By application of this ratiometric method, we could assign average ratios of presynaptic proteins to different synapse populations in two central relays of the olfactory pathway. In this manner, synapse types could be characterized by distinct fingerprints of presynaptic protein ratios. Subsequently, we used the method for the analysis of aberrant situations: we reduced levels of Bruchpilot, a major presynaptic protein, and ablated different synapse or cell types. Evoked changes of ratio fingerprints were proportional to the modifications we had induced in the system. Thus, such ratio signatures are well suited for the characterization of synapses. In order to contribute to our understanding of both the molecular composition and the function of synapses, we also characterized a novel synaptic protein. This protein, Drep-2, is a member of the Dff family of regulators of apoptosis. We generated drep-2 mutants, which did not show an obvious misregulation of apoptosis. By contrast, Drep-2 was found to be a neuronal protein, highly enriched for example at postsynaptic receptor fields of the input synapses of the major learning centre of insects, the mushroom bodies. Flies mutant for drep-2 were viable but lived shorter than wildtypes. Basic synaptic transmission at both peripheral and central synapses was in normal ranges. However, drep-2 mutants showed a number of deficiencies in adaptive behaviours: adult flies were locomotor hyperactive and hypersensitive towards ethanol-induced sedation. Moreover, the mutant animals were heavily impaired in associative learning. In aversive olfactory conditioning, drep-2 mutants formed neither short-term nor anaesthesia-sensitive memories. We could demonstrate that Drep-2 is required in mushroom body intrinsic neurons for normal olfactory learning. Furthermore, odour-evoked calcium transients in these neurons, a prerequisite for learning, were reduced in drep-2 mutants. The impairment of the mutants in olfactory learning could be fully rescued by pharmacological application of an agonist to metabotropic glutamate receptors (mGluRs). Quantitative mass spectrometry of Drep-2 complexes revealed that the protein is associated with a large number of translational repressors, among them the fragile X mental retardation protein FMRP. FMRP inhibits mGluR-mediated protein synthesis. Lack of this protein causes the fragile X syndrome, which constitutes the most frequent monogenic cause of autism. Examination of the performance of drep-2 mutants in courtship conditioning showed that the animals were deficient in both short- and long-term memory. Drep-2 mutants share these phenotypes with fmrp and mGluR mutants. Interestingly, drep-2; fmrp double mutants exhibited normal memory. Thus, we propose a model in which Drep-2 antagonizes FMRP in the regulation of mGluR-dependent protein synthesis. Our hypothesis is supported by the observation that impairments in synaptic plasticity can arise if mGluR signalling is imbalanced in either direction. We suggest that Drep-2 helps in establishing this balance. N2 - Umfangreiche anatomische und funktionelle Analysen der Konnektivität in Gehirnen von Wirbellosen und Säugern haben in den letzten Jahren große Aufmerksamkeit erhalten. Gleichzeitig ist unser Verständnis von Synapsen auf molekularer Ebene jedoch noch unvollständig. Wir haben erst damit begonnen, die grundlegenden Mechanismen zu entschlüsseln, nach denen die wichtigsten synaptischen Proteine die Ausschüttung und Erkennung von Neurotransmittern sowie Veränderungen der Stärke von Synapsen regulieren. Darüber hinaus ist auch über die Stöchiometrie präsynaptischer Proteine an verschiedenen Synapsen noch wenig bekannt. Eine Untersuchung dieser Eigenschaften würde zum besseren Verständnis der Merkmale verschiedener Synapsentypen beitragen. Präsynaptische Proteine beeinflussen zum Beispiel die Wahrscheinlichkeit der Ausschüttung von Neurotransmittern sowie Mechanismen zur Erzeugung von Kurzzeit-Plastizität. Wir haben die Expressionsstärke mehrerer präsynaptischer Proteine an verschiedenen Synapsentypen des Zentralnervensystems von Drosophila melanogaster mittels Immunhistochemie untersucht. Auf mehreren Ebenen waren deutliche Unterschiede in der relativen Anreicherung der Proteine offensichtlich: Färbungsintensitäten variierten von der Neuropilebene bis zum einzelnen Synapsentyp. Um diese Unterschiede zu quantifizieren, haben wir eine ratiometrische Analyse von Antikörperfärbungen entwickelt. Mit dieser Methode war es möglich, verschiedenen Synapsenpopulationen zweier Schaltstellen der Riechbahn durchschnittliche Ratios präsynaptischer Proteine zuzuweisen. Synapsentypen konnten durch eindeutige Fingerabdrücke präsynaptischer Proteinratios charakterisiert werden. So gelang es uns, die Auswirkungen einer Verringerung der Menge des wichtigen präsynaptischen Proteins Bruchpilot sowie der Entfernung verschiedener Synapsen- und Zelltypen zu untersuchen. Die in diesen Situationen hervorgerufenen Veränderungen der Ratio-Fingerabdrücke entsprachen den von uns im System erzeugten Abweichungen. Ratios präsynaptischer Proteine eignen sich daher gut dafür, Synapsentypen zu charakterisieren. Um unser Verständnis von sowohl der molekularen Zusammensetzung als auch der Funktion von Synapsen zu verbessern, haben wir außerdem das neue synaptische Protein Drep-2 charakterisiert. Drep-2 gehört zu den Dff-Proteinen, einer Familie von Apoptoseregulatoren. Wir haben drep-2 Mutanten erzeugt, bei denen Zelltod jedoch nicht fehlreguliert erschien. Stattdessen stellte sich Drep-2 als neuronales Protein heraus, angereichert zum Beispiel postsynaptisch an Eingangssynapsen der Pilzkörper, den Lernzentren von Insekten. Fliegen, denen das Gen drep-2 fehlte, waren lebensfähig, lebten jedoch kürzer. Die basale Übertragung an peripheren und zentralen Synapsen erschien unverändert. Die Mutanten zeigten jedoch Ausfälle in verschiedenen adaptiven Verhaltensweisen: Die Fliegen waren hyperaktiv in ihrer Bewegung sowie hypersensibel gegenüber Ethanol. Zudem zeigten die Tiere ein stark eingeschränktes assoziatives Lernvermögen. In aversivem Geruchslernen konnten die Mutanten weder Kurz- noch Mittelzeiterinnerungen bilden. Wir konnten nachweisen, dass Drep-2 für normales Geruchslernen in Pilzköper-intrinsischen Neuronen benötigt wird. Außerdem waren bei den Mutanten in diesen Neuronen durch Gerüche hervorgerufene Kalziumsignale, eine Voraussetzung für Lernen, reduziert. Die Lerneinschränkungen der Mutanten konnten durch Gabe eines pharmakologischen Agonisten metabotroper Glutamatrezeptoren (mGluR) vollständig behoben werden. Quantitative Massenspektrometrie von Drep-2-Komplexen zeigte, dass das Protein mit einer großen Anzahl von Translationsrepressoren assoziiert ist. Unter diesen befand sich das Fragile X Protein FMRP. FMRP inhibiert mGluR-vermittelte Proteinsynthese. Ein Mangel an FMRP erzeugt das Fragile X Syndrom, die häufigste monogenetische Ursache für Autismus. Bei Balzkonditionierung konnten drep-2 Mutanten weder Kurz- noch Langzeiterinnerungen speichern. Diesen Phänotyp haben sie mit fmrp- und mGluR-Mutanten gemeinsam. Drep-2; fmrp Doppelmutanten hatten jedoch ein normales Gedächtnis. Wir gehen daher davon aus, dass Drep-2 FMRP bei der Regulierung von mGluR-abhängiger Translation entgegenwirkt. Die Beobachtung, dass synaptische Plastizität gestört sein kann, wenn mGluR-Signalwege unausgewogen sind, stärkt diese Hypothese. Wir nehmen an, dass Drep-2 dazu beiträgt, von mGluR erzeugte Signale zu balancieren. KW - Taufliege KW - Neurobiologie KW - Zentralnervensystem KW - Synapse KW - Molekulare Marker KW - Aktive Zone KW - Lernen und Gedächtnis KW - Pilzkörper KW - Fragiles X Syndrom KW - Active zone KW - Learning and memory KW - Mushroom body KW - Conditioning KW - Metabotropic glutamate receptor KW - Neurogenetik KW - Drosophila Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-85018 ER - TY - THES A1 - Asthana, Manish T1 - Associative learning – Genetic modulation of extinction and reconsolidation and the effects of transcranial Direct Current Stimulation (tDCS) T1 - Assoziatives Lernen - Genetische Modulation der Auslöschung und Rück-verfestigung und die Auswirkungen der transkraniellen Gleichstromstimulation (tDCS) N2 - Scientific surveys provide sufficient evidence that anxiety disorders are one of the most common psy-chiatric disorders in the world. The lifetime prevalence rate of anxiety disorder is 28.8% (Kessler, et al., 2005). The most widely studied anxiety disorders are as follows panic disorder (PD), post-traumatic stress disorder (PTSD), obsessive-compulsive disorder (OCD), social phobia (or social anxiety disorder), specific phobias, and generalized anxiety disorder (GAD). (NIMH Article, 2009). Classical conditioning is the stable paradigm used from the last one century to understand the neurobi-ology of fear learning. Neurobiological mechanism of fear learning is well documented with the condi-tioning studies. In the therapy of anxiety disorders, exposure based therapies are known to be the most effective approaches. Flooding is a form of exposure therapy in which a participant is exposed to the fear situation and kept in that situation until their fear dissipates. The exposure therapy is based on the phenomena of extinction; this means that a conditioned response diminishes if the conditioned stimulus (CS) is repeatedly presented without an unconditioned stimulus (UCS). One problem with extinction as well as with exposure-based therapy is the problem of fear return (for e.g. renewal, spontaneous recov-ery and reinstatement) after successful extinction. Therefore, extinction does not delete the fear memory trace. It has been well documented that memory processes can be modulated or disrupted using several sci-entific paradigms such as behavioral (for e.g. exposure therapy), pharmacological (for e.g. drug manipu-lation), non-invasive stimulation (for e.g. non-invasive stimulation such as electroconvulsive shock (ECS), transcranial magnetic stimulation (TMS), transcranial direct current stimulation (tDCS), etc. However, modulation of memory processes after reactivation or via non-invasive stimulation is still not clear, which is the focus of the current study. In addition, study of genetic variant suggests that genetic differences play a vital role in the psychiatric disorder especially in fear learning. Hence, it is also one of the concerns of the current dissertation to investigate the interaction between gene and reconsolidation of memory. With respect to fear-conditioning, there are three findings in the current dissertation, which are as fol-lows: (i) In the first study we investigated that non-invasive weak electrical stimulation interferes with the consolidation process and disrupts the fear consolidation to attain stable form. This might offer an effective treatment in the pathological memories, for e.g. PTSD, PD, etc. (ii) In the second study we demonstrated whether a brief single presentation of the CS will inhibit the fear recovery. Like earlier studies we also found that reactivation followed by reconsolidation douses fear return. Attenuation of fear recovery was observed in the reminder group compared to the no-reminder group. (iii) Finally, in our third study we found a statistically significant role of brain derived neurotrophic factor (BDNF) polymorphism in reconsolidation. Results of the third study affirm the involvement of BDNF variants (Met vs. Val) in the modulation of conditioned fear memory after its reactivation. In summary, we were able to show in the current thesis modulation of associative learning and recon-solidation via transcranial direct current stimulation and genetic polymorphism. N2 - Mit einer lebenslangen Prävalenz von etwa 28% (Kessler Rc, 2005) stellen Angststörungen eine der häufigsten psychischen Störungen weltweit dar. Zu den am besten untersuchten Angststörungen gehö-ren Panikstörungen (PD), posttraumatische Belastungsstörungen (PTSD), Zwangsstörungen (OCD), soziale Phobien (oder soziale Angststörungen), spezifische Phobien und generalisierte Angststörungen (GAD) (NIMH Artikel, 2009). Die klassische Konditionierung ist das seit dem letzten Jahrhundert gültige Paradigma zur Erforschung der neurobiologischen Mechanismen des Angstlernens. Bei der Behandlung von Angststörungen haben sich Konfrontationstherapien als äußerst wirksam herausgestellt. Reizüberflutung (Flooding) ist bei-spielsweise eine Form der Konfrontationstherapie, bei der der Teilnehmer einer furchteinflößenden Situation ausgesetzt und in ihr gehalten wird, bis seine Furcht vergeht. Die Konfrontationstherapie ba-siert auf dem Phänomen der Extinktion, also dem Rückgang eines konditionierten Verhaltens nach wie-derholter Präsentation eines konditionierten Stimulus (CS) ohne einen unkonditionierten Stimulus (UCS). Ein Problem der Extinktion und der Konfrontationstherapien ist, dass das Furchtgefühl nach einer erfolgreichen Extinktion zurückkehren kann, was darauf hinweist, dass eine Extinktion nicht die Spuren des Angstgedächtnisses löscht. Vieles deutet darauf, dass der Erinnerungsprozess mittels verschiedenener wissenschaftlicher Para-digmen moduliert oder unterbrochen werden kann. Hierzu gehören etwa behavioristische (z.B. Kon-frontationstherapie), pharmakologische oder nicht-invasive Interventionen (z.B. Elektrokonvulsions-therapie (ECS), transkranielle Magnetstimulation (TMS) oder transkranielle Gleichstromstimulation (tDCS)). Da die Modulation von Erinnerungsprozessen nach einer Reaktivierung oder durch eine nicht-invasive Stimulation derzeit noch unzureichend erforscht ist, wurde der Schwerpunkt der vorliegenden Studie auf diese Thematik gelegt. Ein weiteres Ziel ist es, die Wechselwirkung bestimmter Gene mit der Rekonsolidierung des Gedächtnisses zu untersuchen, also Prozesse, denen eine entscheidende Rolle für Angststörungen im Allgemeinen und Furcht-Lernen im Speziellen zugeschrieben wird. Die vorliegende Dissertation umfasst drei zentrale Ergebnisse zur konditionierten Angst: (i.) In der ers-ten Studie wurde herausgefunden, dass eine nicht-invasive, schwache Stimulation den Konsolidie-rungsprozess beeinflusst und verhindert, dass die Angstkonsolidierung eine stabile Form erreicht. Dies könnte eine neue Möglichkeit darstellen, pathologische Gedächtnisinhalte, die z.B. bei Störungen wie PTSD oder PD vorkommen, effektiv zu behandeln. (ii.) Die zweite Studie untersuchte, ob eine kurze, einfache Präsentation des CS das Wiederaufkommen von Angst hemmen kann. Ähnlich wie in früheren Studien beschrieben, fanden auch wir, dass eine Reaktivierung gefolgt von einer Rekonsolidierung die Rückkehr der Angst unterbindet. Insbesondere wurde in der Gruppe, deren Teilnehmer erneut kon-frontiert wurden (reminder), im Vergleich zur Kontroll-Gruppe (no-reminder) ein verringertes Wieder-aufkommen von Angst beobachtet. (iii.) Die dritte Studie zeigte, dass ein Polymorphismus im BDNF-Gen (Met vs Val) eine signifikante Rolle für die Rekonsolidierung und die Modulation des konditionierten Angstgedächtnisses nach seiner Reaktivierung spielt. KW - Konditionierung KW - Angststörung KW - Associative learning KW - transcranial Direct Current Stimulation (tDCS) KW - Elektrotherapie KW - Brain-derived neurotrophic factor KW - Assoziatives Lernen KW - transkranielle Gleichstromstimulation Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-84158 ER - TY - THES A1 - Schul, Daniela T1 - Spatio-temporal investigation and quantitative analysis of the BMP signaling pathway T1 - Raum-Zeitliche Untersuchung und quantitative Analyse des BMP-Signaltransduktionsweges N2 - Bone Morphogenetic Proteins (BMPs) are key regulators for a lot of diverse cellular processes. During embryonic development these proteins act as morphogens and play a crucial role particularly in organogenesis. BMPs have a direct impact on distinct cellular fates by means of concentration-gradients in the developing embryos. Using the diverse signaling input information within the embryo due to the gradient, the cells transduce the varying extracellular information into distinct gene expression profiles and cell fate decisions. Furthermore, BMP proteins bear important functions in adult organisms like tissue homeostasis or regeneration. In contrast to TGF-ß signaling, currently only little is known about how cells decode and quantify incoming BMP signals. There is poor knowledge about the quantitative relationships between signal input, transducing molecules, their states and location, and finally their ability to incorporate graded systemic inputs and produce qualitative responses. A key requirement for efficient pathway modulation is the complete comprehension of this signaling network on a quantitative level as the BMP signaling pathway, just like many other signaling pathways, is a major target for medicative interference. I therefore at first studied the subcellular distribution of Smad1, which is the main signal transducing protein of the BMP signaling pathway, in a quantitative manner and in response to various types and levels of stimuli in murine c2c12 cells. Results indicate that the subcellular localization of Smad1 is not dependent on the initial BMP input. Surprisingly, only the phospho-Smad1 level is proportionally associated to ligand concentration. Furthermore, the activated transducer proteins were entirely located in the nucleus. Besides the subcellular localization of Smad1, I have analyzed the gene expression profile induced by BMP signaling. Therefore, I examined two endogenous immediate early BMP targets as well as the expression of the stably transgenic Gaussia Luciferase. Interestingly, the results of these independent experimental setups and read-outs suggest oscillating target gene expression. The amplitudes of the oscillations showed a precise concentration-dependence for continuous and transient stimulation. Additionally, even short-time stimulation of 15’ activates oscillating gene-expression pulses that are detectable for at least 30h post-stimulation. Only treatment with a BMP type I receptor kinase inhibitor leads to the complete abolishment of the target gene expression. This indicated that target gene expression oscillations depend directly on BMP type I receptor kinase activity. N2 - Bone Morphogenetic Proteins (BMPs) stellen wichtige Regulatoren für eine Vielzahl von verschiedenen zellulären Prozessen dar. Während der Embryonalentwicklung agieren diese Proteine als Morphogene und spielen daher eine entscheidende Rolle für diesen Prozess, vor allem in der Organogenese. Durch Konzentrationsgradienten üben BMPs einen direkten Einfluss auf verschiedene zelluläre Schicksale im entwickelnden Embryo aus. Aufgrund dieser Gradienten gelangen vielfältige Signalinformationen zu den verschiedenen Zellen, welche die extrazelluläre Information in verschiedene Genexpressionsprofile und Zellschicksalsentscheidungen umwandeln. Darüber hinaus tragen BMPs wichtige Funktionen im erwachsenen Organismus, wie z.B. Gewebshomöostase oder -regeneration. Im Gegensatz zu dem verwandten TGF-ß Signaltransduktionsweg ist derzeit nur wenig über die zelluläre Übersetzung und Quantifizierung eingehender BMP-Signale bekannt. Es gibt wenige Kenntnisse über die quantitative Beziehung zwischen Signaleingang, Überträgerproteinen, ihren Zuständen sowie intrazellulären Positionen, und schließlich ihre Fähigkeit Signaleingänge systemisch zu integrieren und qualitative Antworten der Zelle zu produzieren. Eine wesentliche Voraussetzung für die effiziente Signaltransduktions-modulierung ist das vollständige Verständnis des Signalnetzwerkes auf einer quantitativen Ebene, da der BMP-Signalweg, wie auch viele andere Signalwege, ein wichtiges Ziel für medizinische Anwendungen und Medikamentenentwicklung ist. Daher untersuchte ich zunächst die subzelluläre Verteilung der wichtigsten Signalweiterleitungsproteine des BMP-Signalweges, der Smad1-Proteine, auf quantitativer Ebene und deren Reaktion auf verschiedene Stimulierungsarten und BMP-Konzentrationsstufen in murinen c2c12-Zellen. Die Ergebnisse zeigen, dass die subzelluläre Lokalisation von Smad1 unabhängig von der BMP-Konzentration ist und nur das phospho-Smad1 Level proportional zur Konzentration des Liganden steigt. Darüber hinaus befanden sich die aktiven Überträgerproteine nach Stimulierungvollständig im Zellkern. Neben der subzellulären Lokalisation von Smad1, habe ich das Genexpressionsprofil von BMP-Zielgenen analysiert. Ich untersuchte zwei endogene und frühe BMP-Zielgene sowie die Expression der stabil transgenen Gaussia Luciferase. Interessanterweise deuten die Ergebnisse dieser zwei unabhängigen Versuchsaufbauten und Detektionsmethoden auf eine oszillierende Expression der Zielgene hin. Die Amplituden der Schwingungen zeigten eine deutliche Konzentrationsabhängigkeit bei kontinuierlicher und transienter Stimulation. Außerdem aktiviert eine Kurzzeitstimulierung von 15 Minuten ebenfalls ein oszillierendes Genexpressionsprofil, welches für mindestens 30 Stunden nach der Stimulierung nachweisbar ist. Nur die Behandlung mit einem BMP Typ-I-Rezeptorkinaseinhibitor führt zur vollständigen Aufhebung der Zielgenexpression. Infolgedessen sind die Oszillationen der Zielgenexpression direkt von der Aktivität der BMP Typ-I-Rezeptorkinase abhängig. KW - Knochen-Morphogenese-Proteine KW - Signaltransduktion KW - BMP-Signaltransduktionsweg KW - Analyse KW - BMP signaling pathway KW - analysis Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-84224 ER - TY - THES A1 - Li, Xiaoli T1 - Functional analyses of ES cell pluripotency by inducible knockdown of the Polycomb group protein Pcgf6 T1 - Functionelle Analysen der ES-Zell-Pluripotenz durch induzierbaren Knockdown des Polycomb group Proteins Pcgf6 N2 - Polycomb group (PcG) proteins are chromatin modifiers involved in heritable gene repression. Two main PcG complexes have been characterized: Polycomb repressive complex (PRC) 2 is involved in the initiation of gene silencing, whereas PRC1 participates in the stable maintenance of gene repression. Pcgf4 (Polycomb group protein, Bmi1) is one of the most studied PRC1 members with essential functions for embryonic development and adult stem cell self renewal. In embryonic stem cells (ES cells), Pcgf4 is poorly expressed while its paralogs (Pcgf1, Pcgf2, Pcgf3, Pcgf5 and Pcgf6) are expressed at higher levels. The relevance of the Pcgf paralog Pcgf6 for the maintenance of ESC pluripotency has not been addressed so far. My analyses revealed that Pcgf6 was the most expressed Pcgf paralog in undifferentiated ES cells. When ES cells differentiated, gene expression of Pcgf6 strongly declined. To investigate the functions of Pcgf6 in ES cells, we established a doxycycline (dox) inducible shRNA-targeted knockdown system according to publications by Seibler et al. (Seibler et al. 2005; Seibler et al. 2007). Following dox-induced knockdown (KD) of Pcgf6, we observed decreased ES cell colony formation. In parallel, gene expression of pluripotency markers Oct4, Nanog and Sox2 was reduced upon dox-treatment, wheras the expression of mesoderm genes such as T (Brachyury) were up-regulated. Further, microarray analysis revealed de-repression of several spermatogenesis-specic genes upon Pcgf6-KD, suggesting that Pcgf6 may play a role during spermatogenesis. Upon in vitro differentiation, Pcgf6-KD ES cells showed increased hemangioblast formation, paralleled by increased hematopoietic development. In summary, results of this study suggest that Pcgf6 is involved in maintaining ES cell identity by repressing lineage-specific gene expression in undifferentiated ES cells. N2 - Polycomb Gruppe (PcG) Proteine sind Chromatin-Modifikatoren, die an der vererbbaren Genrepression beteiligt sind. Primär wurden bisher zwei PcG-Komplexe charakterisiert: Polycomb-repressiv-Komplex (PRC) 2, der die ersten Schritte des Gen-Silencings übernimmt, und PRC1, der an der stabilen Aufrechterhaltung der Genrepression beteiligt ist. Pcgf4 (Bmi1) ist das am besten untersuchte PRC1-Mitglied. Pcgf4 hat wichtige Funktionen in der embryonalen Entwicklung und in der Selbst-Erneuerung adulter Stammzellen. In embryonalen Stammzellen (ES-Zellen) wird Pcgf4 kaum exprimiert, während seine Paraloge (Pcgf1, Pcgf2, Pcgf3, Pcgf5 und Pcgf6) höher exprimiert sind. Die Bedeutung des Pcgf-Paralogs Pcgf6 für die Aufrechterhaltung der Pluripotenz von ES-Zellen wurde bislang nicht untersucht. Meine Analysen zeigten, dass Pcgf6 der am meisten exprimierter Pcgf-Paralog in undifferenzierten ES-Zellen war. Während der Differenzierung von ES-Zellen wurde die Expression von Pcgf6 stark reduziert. Um die Funktionen von Pcgf6 in ES-Zellen zu untersuchen, habe ich ein Doxycyclin (dox)-induzierbares shRNA-Expressionssystem für den gezielten Knockdown (KD) von Pcgf6 nach Seibler et al. (Seibler et al. 2005; Seibler et al. 2007) etabliert. Nach dox-induziertem KD von Pcgf6 beobachtete ich eine Verringerung der ES-Zell-Kolonie-Bildung. Die Expression der Pluripotenzmarker Oct4, Nanog und Sox2 war nach Dox-Behandlung reduziert, während die Expression mesodermaler Gene, wie z.B. T (Brachyury), hochreguliert wurden. Außerdem zeigten Microarray-Analysen eine De-Repression Spermatogenese-spezifischer Gene nach KD von Pcgf6, was darauf hindeutete, dass Pcgf6 eine Rolle in der Spermatogenese spielen könnte. In der in-vitro- Differenzierung zeigten Pcgf6-KD-ES-Zellen, neben einer erhöhten Bildung von Hämangioblasten, mehr hämatopoetische Vorläufer. Zusammenfassend zeigten die Daten dieser Studie, dass das Pcgf-Paralog Pcgf6 an der Aufrechterhaltung der ES-Zell-Identität durch Unterdrücken lineage-spezifischer Geneexpression in undifferenzierten ES-Zellen beteiligt ist. KW - Embryonale Stammzelle KW - Pluripotenz KW - ES cells KW - Polycomb KW - Epigenetik KW - ES Zellen Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-84015 ER - TY - THES A1 - Rudolf, Ronald T1 - Transcriptional Regulation of and by NFATc1 in Lymphocytes T1 - Transkriptionelle Regulation von und durch NFATc1 in Lymphozyten N2 - The transcription factor NFATc1 has been shown to regulate the activation and differentiation of T-cells and B-cells, of DCs and megakaryocytes. Dysregulation of NFAT signaling was shown to be associated with the generation of autoimmune diseases, malignant transformation and the development of cancer [71]. The primary goal of this work was to gain insights on Nfatc1 induction and regulation in lymphocytes and to find new direct NFATc1 target genes. Three new BAC -transgenic reporter mouse strains (tgNfatc1/Egfp, tgNfatc1/DE1 and tgNfatc1/DE2) were applied to analyze Nfatc1 induction and regulation in primary murine B- and T-cells. As a result, we were able to show the persistent requirement of immunoreceptor-signaling for constant Nfatc1 induction, particularly, for NFATc1/αA expression. Furthermore, we showed that NF-κB inducing agents, such as LPS, CpG or CD40 receptor engagement, in combination with primary receptor-signals, positively contributed to Nfact1 induction in B-cells [137]. We sought to establish a new system which could help to identify direct NFATc1 target genes by means of ChIP and NGS in genom-wide approaches. We were able to successfully generate a new BAC-transgene encoding a biotinylatable short isoform of NFATc1, which is currently injected into mice oocyte at the TFM in Mainz. In addition, in vivo biotinylatable NFATc1–isoforms were cloned and stably expressed in the murine B-cell lymphoma line WEHI-231. The successful use of these cells stably overexpressing either the short NFATc1/αA or the long NFATc1/βC isoform along with the bacterial BirA biotin ligase was confirmed by intracellular stainings, FACS analysis, confocal microscopy and protein IP. By NGS, we detected 2185 genes which are specifically controlled by NFATc1/αA, and 1306 genes which are exclusively controlled by NFATc1/βC. This shows that the Nfatc1 locus encodes “two genes” which exhibit alternate, in part opposite functions. Studies on the induction of apoptosis and cell-death revealed opposed roles for the highly inducible short isoform NFATc1/αA and the constantly expressed long isoform NFATc1/βC. These findings were confirmed by whole transcriptome-sequencing performed with cells overexpressing NFATc1/αA and NFATc1/βC. Several thousand genes were found to be significantly altered in their expression profile, preferentially genes involved in apoptosis and PCD for NFATc1/βC or genes involved in transcriptional regulation and cell-cycle processes for NFATc1/αA. In addition we were able to perform ChIP-seq for NFATc1/αA and NFATc1/βC in an ab-independent approach. We found potential new target-sites, but further studies will have to address this ambitious goal in the future. In individual ChIP assays, we showed direct binding of NFATc1/αA and NFATc1/βC to the Prdm1 and Aicda promoter regions which are individually controlled by the NFATc1 isoforms. N2 - Der Transkriptionsfaktor NFATc1 wurde als Regulator der Aktivierung und Differenzierung für T-Zellen, B-Zellen, Dendritische-Zellen und Megakaryozyten beschrieben. Autoimmunerkrankungen und die Entstehung von Krebs wurden mit Fehlregulationen der NFAT-Signalwege in Verbindung gebracht [71]. Ziel dieser Arbeit war der Gewinn neuer Erkenntnisse über die Induktion und Regulation von NFATc1 in Lymphozyten. Darüber hinaus sollten Gene, welche direkt durch NFATc1 gebunden und reguliert werden, identifiziert werden. Um die Induktion und Regulation von NFATc1 in primären T- und B-Zellen untersuchen zu können, wurden drei BAC transgene Reporter Maus Linien (tgNfatc1/Egfp, tgNfatc1/DE1 and tgNfatc1/DE2) verwendet. Dadurch war es uns möglich zu zeigen, dass es einer ununterbrochenen Antigen-Rezeptor Stimulation bedarf, um NFATc1, im Besonderen die Transkription der kurzen Isoform NFATc1/αA, dauerhaft zu induzieren. Zusätzlich konnten wir zeigen, dass Induktoren wie LPS, CpG oder auch die Stimulation des CD40-Rezeptors, die die Expression des Transkriptionsfaktors NF-B zur Folge haben, einen positiven Einfluss auf die Nfatc1-Induktion haben [137]. Unser Interesse lag darin, ein System zu etablieren, dass es uns ermöglichen sollte, neue NFATc1-Zielgene durch ChIP assays und Genom-weite Sequenzierungen zu ermitteln. Es ist uns gelungen, ein neues BAC-Transgen, welches für eine in vivo biotinylierbare Variante des NFATc1/αA Proteins kodiert, zu erzeugen. Dieses Konstrukt wird zum gegenwärtigen Zeitpunkt - in Zusammenarbeit mit der Universität Mainz (TFM) - in die Vorkerne von Maus-Eizellen injiziert. Ferner wurden biotinylierbare NFATc1-Isoformen kloniert und mit Hilfe retroviraler Plasmide stabil in WEHI-231 B-Lymphom-Zellen integriert. Durch intrazellulare Färbungen, FACS-Analysen, Konfokalmikroskopie und Immunpräzipitationen konnten wir eine erfolgreiche in vivo Biotinylierung in NFATc1/αA- und NFATc1/βC-exprimierenden WEHI-231 Zellen nachweisen. Mittels Next-Generation-Sequencing, in Kollaboration mit TRON, Univ. Mainz, konnten wir 2185 Gene, die spezifisch durch NFATc1/αA kontrolliert wurden, und 1306 Gene, die ausschließlich durch die Überexpression von NFATc1/βC reguliert wurden, identifizieren. Diese Ergebnisse zeigen, dass im Nfatc1 Locus „zwei Gene“ mit alternativer, zum Teil gegensätzlicher Funktion, kodiert sind. Untersuchungen zu Apoptose und Zelltod haben entgegengesetzte Eigenschaften der stark induzierbaren, kurzen Isoform NFATc1/αA und der stetig exprimierten langen Isoform NFATc1/βC aufgezeigt. Daten von Sequenzierungen des gesamten Transkriptoms, die mit NFATc1/αA und -βC überexprimierenden WEHI-231 Zellen durchgeführt wurden (TRON, Mainz), bestätigten diese Befunde. Es zeigte sich, dass es wesentliche Veränderungen der Expressionsprofile Tausender von Genen gab. In WEHI-231-Zellen, die NFATc1/βC überexprimierten, waren viele dieser Gene an Apoptose und Zelltod beteiligt. Demgegenüber waren in NFATc1/αA-Zellen vor allem Gene betroffen, die an transkriptionaler Regulation und dem Zellzyklus beteiligt waren. Überdies war es uns möglich, ChIPseq Assays für NFATc1/αA und NFATc1/βC in einem Antikörper-unabhängigen Ansatz durchzuführen. Dadurch konnten wir neue NFATc1-Bindungstellen identifizieren. Es bedarf jedoch noch weiterer Untersuchungen, um diese Ergebnisse der Genom-weiten ChIPseq Assays zu bestätigen. Durch weitere ChIP Experimente konnten wir eine direkte Bindung von NFATc1/αA und NFATc1/βC an die regulatorischen Regionen der Prdm1- und Aicda-Gene nachweisen. Die Transkription beider Gene wurde durch die Überexpression von NFATc1/αA und -βC deutlich reguliert und spielt offenbar bei der Bildung von Plasma-B-Zellen, die für die Antikörper-Produktion verantwortlich sind, eine wesentliche Rolle. KW - Lymphozyt KW - Transkriptionsfaktor KW - Lymphozyten KW - NFATc1 KW - Lymphocytes KW - NFATc1 KW - Genregulation KW - Maus Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-83993 ER - TY - THES A1 - Lee, Wook T1 - Computational study on the catalytic mechanism of mtKasA T1 - Theoretische Untersuchungen des katalytischen Mechanismus von mtKasA N2 - Das Enzym KasA spielt eine entscheidende Rolle in der Biosynthese von Mykolsäuren, den Bausteinen der Zellwände von Mycobacteriumtuberculosis. Dessen essentielle Notwendigkeit zeigt sich bei Abwesenheit von KasA in einer Zelllyse (Auflösung von Zellen) bei Mycobacteriumtuberculosis. Durch seine Bedeutung für Mycobacteriumtuberculosis, dem Erreger von Tuberkulose und damit der zweithäufigsten Todesursache durch Infektionskrankheiten, stellt KasA ein vielversprechendes Ziel für die Entwicklung neuer Medikamente gegen Tuberkulose dar. Durch das Auftreten von extensiv resistenten Stämmen welche die meisten bekannten Antibiotika zur Bekämpfung von Tuberkulose inaktivieren wird es dringend notwendig neue Medikamente gegen Tuberkulose zu entwickeln. In Kapitel 3.1 wird der Protonierungszustand der katalytischen Reste im Ruhezustand untersucht. Für diese Untersuchungen wurden Free Energy Perturbation (FEP) Rechnungen und MD Simulationen verwendet. Die Ergebnisse zeigten, dass der zwitterionische Zustand am wahrscheinlichsten ist. Um diese Aussage mit weiteren handfesten Daten zu untermauern wurden Potential(hyper)flächen (PES) für den Protonentransfer zwischen neutralen und zwitterionischen Zustand mit Hilfe von QM/MM Methoden berechnet. Durch die starke Abhängigkeit der QM/MM Optimierung von der Ausgangsstruktur war es nicht möglich konsistente Ergebnisse für diese Berechnungen zu bekommen. Um dieses Problem zu umgehen wurde ein auf QM/MM basierendes Umbrella Sampling mit Semiempirischen Methoden (RM1) durchgeführt. Die sich daraus ergebende PMF Fläche zeigt das der zwitterionische Zustand stabiler ist als der neutrale Zustand. In Kapitel 3.2 wurde der Protonierungszustand der entsprechenden Reste im Acyl-Enzym Zustand untersucht. Im Unterschied zu anderen katalytischen Resten ist der Protonierungszustand von His311 ist nicht eindeutig im Acyl-Enzym Zustand und es ergeben sich aus den verschiedenen Protonierungszuständen verschiedene Decarboxylierungsmechanismen. Um den wahrscheinlichsten Protonierungszustand bezüglich der freien Energie zu bestimmen wurden FEP Rechnungen durchgeführt. Die Ergebnisse zeigen, dass der pKa Wert an Nδ beträchtlich durch die Enzymumgebung verringert wird, während dies für Nε nicht der Fall ist. Zusätzlich dazu wurden die PMF Profile für den Protonentransfer zwischen Lys340 und Glu354 mit der QM/MM basierten Umbrella Sampling Methode berechnet. Die Ergebnisse zeigen, dass das Lys340/Glu354 Paar eher neutral als ionisch ist, wenn His311 an Nε protoniert ist. Ein relativ hoher ionischer Charakter des Lys340/Glu354 Paares, wenn His311 doppelt protoniert ist, gibt einen wertvollen Einblick in die Rolle welche das Lys340/Glu354 Paar beim verschieben des Protonierungszustandes von Nδ zu Nε im His311 nach dem Acyltransferschritt spielt. Die Ergebnisse zeigen, dass His311 neutral und an Nε protoniert ist. Ebenso ist das Lys340/Glu354 Paar neutral im Acyl-Enzym Zustand. Diese berechneten Ergebnisse führen zu dem Schluss, dass die Decarboxylierung durch ein Oxyanion Loch erleichtert wird welches aus zwei katalytischen Histidin Resten besteht. In Kapitel 3.3 wurde der Protonierungszustand der katalytischen Reste im Ruhezustand erneut untersucht da eine aktuelle Benchmarkstudie zeigte, dass die verwendete Semiempirische Methode (RM1) in Kapitel 3.1 dazu tendiert die Stabilisation des zwitterionischen Zustandes zu überschätzen. Auch wurde in Kapitel 3.1 das Lys340/Glu354 Paar als rein ionisch angesehen, während sich in Kapitel 3.2 herausstellte, dass es sich um eine Mischung aus neutralen und ionischen Charakter handelt. Die neuen Untersuchungen beinhalten eine größere QM Region inklusive des Lys340/Glu354 Paares. Der dafür verwendete BLYP/6-31G** Ansatz ist ausreichend akkurat für die aktuelle Fragestellung, was durch Vergleichsrechnungen bewiesen wurde. Die neuen Ergebnisse der QM/MM MD und FEP Rechnungen deuten an, dass die katalytischen Reste im Ruhezustand höchst wahrscheinlich neutral vorliegen. Dies wiederum führt zu der Frage wie KasA aktiviert werden kann um die katalytische Reaktion zu initiieren. Auf der Basis der Ergebnisse der MD Simulationen und FEP Rechnungen für den His311Ala Mutanten in Kapitel 3.1 stellten wir die Hypothese auf, dass die offene Konformation von Phe404 die Aktivierung der katalytischen Reste durch die (Aus)bildung einer starken Wasserstoffbindung einleitet. Die QM/MM MD Simulation bestätigt dass diese Aktivierung der katalytischen Reste durch die offene Konformation des Phe404 bewerkstelligt werden kann. Das entsprechende auf Kraftfeld basierende PMF Profil zeigt auch, dass dieser Konformationswechsel energetisch realisierbar ist. Die Verteilung der hydrophilen und hydrophoben Reste in der Malonyl Bindungstasche in Verbindung mit unseren berechneten Ergebnissen geben einen Einblick in den detaillierten N2 - KasA is a key enzyme which plays an essential part in the biosynthetic pathway of mycolic acids, the building block of cell wall in Mycobacterium tuberculosis. Its importance was demonstrated by the finding that the depletion of KasA leads to the cell lysis of Mycobacterium tuberculosis. Since Mycobacterium tuberculosis is a pathogen of tuberculosis, the second leading cause of death from an infectious disease worldwide, KasA has drawn attention as one of the attractive drug targets against tuberculosis. Due to the emergence of extensively drug-resistant strains which make most of the known antibiotics for treating tuberculosis ineffective, it became an urgent issue to develop new drugs against tuberculosis. In chapter 3.1, the protonation state of the catalytic residues in the resting state was mainly addressed. The FEP computation and MD simulations were employed for this investigation, and the results showed that the zwitterionic state is most probable. To underpin this conclusion with more solid data, The PESs for the proton transfer between the neutral and zwitterionic state were computed in the context of QM/MM. However, due to the strong dependency of the QM/MM optimization on the initial structure, it was not possible to obtain consistent results from these computations. To circumvent this problem, QM/MM based umbrella sampling was carried out with a semi-empirical method (RM1), and the resulting PMF surface indicated that the zwitterionic state is more stable than the neutral state. In chapter 3.2, the protonation state of significant residues in the acyl-enzyme state was investigated. Unlike other catalytic residues, the protonation state of His311 is ambiguous in the acyl-enzyme state, and different decarboxylation mechanisms can be derived depending on the protonation state of His311 in the acyl-enzyme state. Therefore, FEP computations were carried out to find most probable protonation state of His311 in terms of free energy, and the results showed that the pKa value at Nδ is considerably lowered by the enzyme environment while that of Nε is not. Additionally, the PMF profiles for the proton transfer between Lys340 and Glu354 were computed using QM/MM based umbrellas sampling method, and the results showed that the property of the Lys340/Glu354 pair is neutral rather than ionic when His311 is protonated at Nε. Moreover, a relatively larger ionic character of the Lys340/Glu354 pair when His311 is doubly protonated provides a valuable insight into how the Lys340/Glu354 pair plays a role in shifting the protonated state from Nδ to Nε in His311 after the acyl-transfer step. Overall, the results demonstrated that His311 is neutral and protonated at Nε, and the Lys340/Glu354 pair is also neutral in the acyl-enzyme state. Those computational results lead to the conclusion that the decarboxylation reaction is facilitated by an oxyanion hole which is comprised of two catalytic histidines. In chapter 3.3, the protonation state of catalytic residues in the resting state was revisited because a recent benchmark study showed that the employed semi-empirical method (RM1) in chapter 3.1 tends to overestimate the stabilization of the zwitterionic state. Furthermore, the Lys340/Glu354 pair was considered as purely ionic in chapter 3.1, while it actually has a mixed neutral and ionic character as demonstrated in chapter 3.2. The new investigations employed a larger QM region including the Lys340/Glu354 pair with the BLYP/6-31G** approach, which was proven to be accurate enough for the present purpose by benchmark computations. The new results from the QM/MM MD and FEP computations indicated the catalytic residues to be neutral most probably in the resting state, and this in turn brought up the question how KasA can be activated to initiate the catalytic reaction. On the basis of the results from the MD simulations and FEP computations for the His311Ala mutant in chapter 3.1, we hypothesized that the open conformation of Phe404 would trigger the activation of the catalytic residues by the formation of a strong hydrogen bond. The QM/MM MD simulation proved that the activation of the catalytic residues can indeed be accomplished by the open conformation of Phe404 we suggested, and the corresponding force field based PMF profile also indicated that this conformational change is energetically feasible. The distribution of hydrophilic and hydrophobic residues in the malonyl binding pocket in conjunction with our computational results further provided a valuable insight into the detailed process how the catalytic residues is activated upon the substrate entering. KW - Tuberkelbakterium KW - KasA KW - katalytischer Mechanismus KW - QM/MM KW - Molekular Dynamik KW - KasA KW - catalytic mechanism KW - QM/MM KW - Molecular dynamics KW - Enzymkatalyse KW - Enzym Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-83989 ER - TY - THES A1 - Scholz, Markus T1 - Energy-Dispersive NEXAFS: A Novel Tool for the Investigation of Intermolecular Interaction and Structural Phase Dynamics T1 - Energiedispersives NEXAFS: Eine neue Methode zur Untersuchung intermolekularer Wechselwirkung und Phasendynamik N2 - In the context of this thesis, the novel method soft X-ray energy-dispersive NEXAFS spectroscopy was explored and utilized to investigate intermolecular coupling and post-growth processes with a temporal resolution of seconds. 1,4,5,8- naphthalene tetracarboxylic acid dianhydride (NTCDA)multilayer films were the chosen model system for these investigations. The core hole-electron correlation in coherently coupled molecules was studied by means of energy-dispersive near-edge X-ray absorption fine-structure spectroscopy. A transient phase was found which exists during the transition between a disordered condensed phase and the bulk structure. This phase is characterized by distinct changes in the spectral line shape and energetic position of the X-ray absorption signal at the C K-edge. The findings were explained with the help of theoretical models based on the coupling of transition dipole moments, which are well established for optically excited systems. In consequence, the experimental results provides evidence for a core hole-electron pair delocalized over several molecules. Furthermore, the structure formation of NTCDA multilayer films on Ag(111) surfaces was investigated. With time-resolved and energy-dispersive NEXAFS experiments the intensity evolution in s- and p-polarization showed a very characteristic behavior. By combining these findings with the results of time-dependent photoemission measurements, several sub-processes were identified in the post- growth behavior. Upon annealing, the amorphous but preferentially flat-lying molecules flip into an upright orientation. After that follows a phase characterized by strong intermolecular coupling. Finally, three-dimensional islands are established. Employing the Kolmogorov-Johnson-Mehl-Avrami model, the activation energies of the sub-processes were determined. N2 - Im Rahmen dieser Arbeit wurden die Möglichkeiten der neuartigen Methode energiedispersive Röntgen-Nahkanten-Absorptions-Spektroskopie für die Untersuchung intermolekularer Wechselwirkungen und zeitabhängiger Prozesse während der Strukturbildung aufgezeigt. Als Modellsystem wurden hierbei 1,4,5,8- Naphthalin-Tetracarboxyls¨aure-Dianhydrid-(NTCDA-) Filme verwendet. Es wurde die Rumpfloch-Elektronen-Wechselwirkung kohärent gekoppelter Moleküle mittels energiedispersiver Röntgen-Nahkanten-Absorptions-Spektroskopie untersucht. Dabei wurde eine Übergangsphase gefunden, die während der Ausbildung einer langreichweitigen Ordnung zeitlich zwischen der ungeordneten und der Volumenstruktur auftritt. Diese Übergangsphase zeichnete sich durch eine charakteristische Änderung der spektralen Linienform und ihrer energetischen Position bei Messungen an der C K-Kante aus. Die experimentellen Befunde lassen sich mit Hilfe theoretischer Modelle erklären, welche die Kopplung von Übergangsdipolmomenten beschreiben. Diese theoretischen Konzepte sind bei optisch angeregten Systemen etabliert. Die experimentellen Ergebnisse zeigen den über mehrere Moleküle delokalisierten Charakter des Rumpfloch-Elektron-Paars. Zudem wurde die Strukturbildung von mehrlagigen NTCDA-Filmen auf Ag(111) untersucht. Zeitabhängige energiedispersive NEXAFS-Experimente mit s- und p-polarisiertem Licht zeigten ein charakteristisches Verhalten. In Kombination mit zeitabhängigen Photoemissionsmessungen wurden bei der Strukturbildung verschiedene Unterprozesse gefunden. Nach erwärmen der Probe richten sich die ursprünglich flach orientierte Moleküle zunächst auf. Im Anschluss folgt eine Aggregation der Moleküle in einer Phase mit starker intermolekularer Kopplung. Letztendlich bildet sich die bekannte dreidimensionale Filmstruktur aus. Anhand des Kolmogorov-Johnson-Mehl-Avrami Modells konnte die Aktivierungsenergie für die verschiedenen Unterprozesse ermittelt werden. KW - Organisches Molekül KW - NEXAFS KW - Zwischenmolekulare Kraft KW - Dünne Schicht KW - Energiedispersiv KW - Phasendynamik KW - Strukturbildung KW - NEXAFS KW - energy-dispersive KW - organic molecule KW - intermolecular interaction KW - phase dynamics Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-83839 ER - TY - THES A1 - Förtig, Alexander T1 - Recombination Dynamics in Organic Solar Cells T1 - Rekombinationsdynamiken in organischen Solarzellen N2 - Neben herkömmlichen, konventionellen anorganischen Solarzellen — hauptsächlich auf Silizium basierend — ist die Organische Photovoltaik (OPV) auf dem besten Wege in naher Zukunft eine kostengünstige, umweltfreundliche, komplementäre Technolgie darzustellen. Die Produktionskosten, die Lebenszeit der Solarzellen sowie deren Wirkungsgrad müssen dabei weiter optimiert werden, um einen Markteintritt der OPV zu ermöglichen. Die vorliegende Arbeit befasst sich mit der Effizienz organischer Solarzellen und deren Limitierung durch die Rekombination von Ladungsträgern. Um funktionsfähige Zellen zu untersuchen, werden zeitaufgelöste Experimente wie die Messung der transienten Photospannung (TPV), des transienten Photostroms (TPC), die Ladungsextraktion (CE) sowie die time delayed collection field (TDCF) Methode angewandt. Untersucht werden sowohl flüssig prozessierte als auch aufgedampfte Proben, unterschiedliche Materialzusammensetzungen und verschiedene Probengeometrien. Das Standardmaterialsystem der OPV, P3HT:PC61BM, wird bei verschiedenen emperaturen und Beleuchtungsstärken auf die Lebenszeit und Dichte der photogenerierten Ladungsträger überprüft. Für den Fall spannungsunabhängiger Generation von Ladungsträgern zeigt sich die Anwendbarkeit der Shockley-Gleichung auf organische Solarzellen. Des Weiteren wird ein konsistentes Modell erläutert, welches den Idealtitätsfaktor direkt mit der Rekombination von freien mit gefangenen, exponentiell verteilten Ladungsträgern verknüpft. Ein Ansatz, bekannt unter der Bezeichung j=V Rekonstruktion, ermöglicht es, den leistungslimitierenden Verlustmechanismus in unbehandelten und thermisch geheizten P3HT:PC61BM Solarzellen zu identifizieren. Dieses Verf ahren, welches TPV, CE und TDCF Messungen beinhaltet, wird auf Proben basierend auf dem neuartigen, low-band gap Polymer PTB7 in Verbindung mit dem Fulleren PC71BM ausgeweitet. Während in der Zelle hergestellt aus reinem Chlorbenzol beträchtliche geminale wie nichtgeminale Verluste zu beobachten sind, erleichtert die Zugabe eines Lösungsmittelzusatzes die Polaronenpaartrennung, was zu einer starken Reduktion geminaler Verluste führt. In einer Kooperation mit dem IMEC Institut in Leuven, werden abschließend die beiden bedeutensten Probenarchitekturen organischer Solarzellen, die planare und die Mischübergang Struktur, jeweils basierend auf CuPC und C60, bezüglich nichtgeminaler Rekombination und Ladungsträgerverteilung miteinander verglichen. Neben den beiden experimentellen Techniken um TPV und CE werden makroskopische Simulationen herangezogen, um den Ursprung unterschiedlichen Voc vs. Lichtintensität–Verhaltens zu erklären. N2 - Besides established, conventional inorganic photovoltaics—mainly based on silicon—organic photovoltaics (OPV) are well on the way to represent a lowcost, environment friendly, complementary technology in near future. Production costs, solar cell lifetime and performance are the relevant factors which need to be optimized to enable a market launch of OPV. In this work, the efficiency of organic solar cells and their limitation due to charge carrier recombination are investigated. To analyze solar cells under operating conditions, time-resolved techniques such as transient photovoltage (TPV), transient photocurrent (TPC) and charge extraction (CE) are applied in combination with time delayed collection field (TDCF) measurements. Solution processed and evaporated samples of different material composition and varying device architectures are studied. The standard OPV reference system, P3HT:PC61BM, is analyzed for various temperatures in terms of charge carrier lifetime and charge carrier density for a range of illumination intensities. The applicability of the Shockley Equation for organic solar cells is validated in case of field-independent charge photogeneration. In addition, a consistent model is presented, directly relating the ideality factor to the recombination of free with trapped charge carriers in an exponential density of states. An approach known as j=V reconstruction enables to identify the performance limiting loss mechanism of as-prepared and thermally treated P3HT:PC61BM solar cells. This procedure, involving TPV, CE and TDCF measurements, is extended to samples based on the rather new, low-band gap polymer PTB7 in combination with PC71BM. While in the devices processed from pure chlorobenzene solution considerable geminate and nongeminate losses are observed, the use of a solvent additive facilitates efficient polaron pair dissociation minimizing geminate recombination. Finally, in collaboration with the IMEC institute in Leuven, the two main organic solar cell device architectures, planar and bulk heterojunction—both based on CuPc and C60—are directly compared in terms of nongeminate recombination and charge carrier distribution. Two experimental techniques, TPV and CE, as well as a macroscopic device simulation are applied to reveal the origin of different Voc vs. light intensity dependence. KW - Organische Solarzelle KW - Fotovoltaik KW - Organischer Halbleiter KW - physics KW - solar cell KW - recombination KW - organic semiconductors KW - Physik KW - Solartechnik KW - Energietechnik KW - Solarzelle KW - Rekombination Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-83895 ER - TY - THES A1 - Niewidok, Natalia T1 - Modulation of radiosensitivity of human tumor and normal cells by inhibition of heat shock proteins Hsp90 and Hsp70 T1 - Modulation der Strahlenempfindlichkeit humaner maligner und nicht-maligner Zellen mittels Inhibition der Hitzeschockproteine Hsp90 und Hsp70 N2 - Cancer is the leading cause of death in economically developed countries (Jemal et al. 2011). Heat shock protein 90 can be a promising target in cancer treatment as it is responsible for sustaining protein homeostasis in every human cell by folding and activating of more than 200 client proteins (Picard et al. 2002). Apart from strong anti-tumor activities in vitro (Smith et al. 2005) and in vivo (Supko et al. 1995), Hsp90 inhibitors can sensitize tumor cells to radiation (Bisht et al. 2003, Stingl et al.2010, Schilling et al. 2011). Recently, our group showed the radiosensitizing potential of novel Hsp90 inhibitors: NVP-AUY922 and NVP-BEP800 (Stingl et al. 2010). The drugs were administered to cancer cell lines of different origin 24 hours before irradiation (drug-first treatment). In the present work, we explored the effects of a schedule other than drug-first treatment on A549 and SNB19 tumor cell lines. Cell samples were treated with either NVP-AUY922 or NVP-BEP800 one hour before IR and kept in the drug-containing medium for up to 48 hours (simultaneous drug-IR treatment). Our findings showed that depending on the tumor cell line, the combination of Hsp90 inhibition and irradiation may result in radiosensitization or apoptosis of cancer cell lines. It is advised to adjust the sequence of treatment, involving Hsp90 inhibition and irradiation, on the basis of the genetic background of tumor cells. Before entering the clinic, novel therapeutics should be tested on non-malignant tissue to exclude their possible toxic activities. Thus, we applied the simultaneous drug-IR treatment on human skin fibroblast strains. This work showed that Hsp90 inhibitors NVP-AUY922 and NVP-BEP800 preferentially sensitize tumor cells to radiation, whereas the effect(s) on normal fibroblasts was much weaker. The exact mechanisms underlying the Hsp90 inhibitors’ selectivity towards malignant cells remain to be elucidated. It was shown previously that the administration of Hsp90 inhibitors, including NVP-AUY922 and NVP-BEP800, induces heat shock response (Niewidok et al. 2012). Heat shock response triggers the up-regulation of Hsp70, which, due to its strong anti-apoptotic properties, might be responsible for reducing the effects of Hsp90 inhibition. The transfection with Hsp70 siRNA suppressed the NVP-AUY922-induced over-expression of the target protein. However, on the long-term scale, it did not influence the radiosensitivity of A549 and SNB19 cells. To summarize, the use of siRNA proved that Hsp70 inhibition could be used to support Hsp90 inhibition on the short-term scale. Therefore, for future works, more potent and stable methods of Hsp70 inhibition are needed. This thesis presented the effects induced by two novel Hsp90 inhibitors NVP-AUY922 and NVP-BEP800, in combination with irradiation in tumor cell lines as well as in normal skin fibroblasts. Hsp70 pre-silencing was tested as a method for improving radiosensitizing potential of NVP-AUY922. These results support the use of NVP-AUY922 and NVP-BEP800 in combination with irradiation in future clinical trials. N2 - Trotz aller wissenschaftlicher Fortschritte, die in den letzten Jahren in der Onkologie erfolgten, ist Krebs eine der Haupttodesursachen in den wirtschaftlich entwickelten Ländern. Das Hitzeschockprotein 90 (Hsp90) stellt ein vielversprechendes neues Target für die Krebstherapie dar, weil es einen großen Anteil des Proteingleichgewichts in jeder humanen Zelle durch Faltung und Aktivierung seiner Klientenproteine kontrolliert (Picard et al. 2002, Trepel et al. 2010). Es wurde gezeigt, dass Hsp90 Inhibitoren starke anti-proliferative Eigenschaften in vitro (Smith et al. 2005) und in vivo aufweisen (Supko et al. 1995). Außerdem führte die Hsp90 Inhibition zur Radiosensibilisierung unterschiedlicher Tumorzelllinien (Bisht et al. 2003, Stingl et al.2010, Schilling et al. 2011). Vor Kurzem wurde in unserer Arbeitsgruppe gezeigt, dass die neuartigen Hsp90 Inhibitoren NVP-AUY922 und NVP-BEP800 zur Erhöhung der Strahlenempfindlichkeit der Tumorzelllinien führen (Stingl et al. 2010). Die Krebszellen wurden 24 Stunden vor der Bestrahlung behandelt und bestrahlt (‚drug-first’ Behandlungsschema). In dieser Doktorarbeit wurden die Effekte eines anderen Behandlungsschemas auf die A549 und SNB19 Tumorzelllinien untersucht. Die Zellen wurden entweder mit NVP-AUY922 oder NVP-BEP800 eine Stunde vor der Bestrahlung behandelt und bis zu 48 Stunden nach der Bestrahlung weiterhin mit Hsp90 Inhibitor kultiviert (simultane drug-IR Behandlungsschema). Zusammenfassend zeigen die hier gewonnenen Ergebnisse, dass abhängig von der Tumorzelllinie, die Kombination der Hsp90 Inhibition mit Bestrahlung zur Radiosensibilisierung oder zur Apoptose führen kann. Die Reihenfolge der Behandlung mit Hsp90 Inhibitoren und Bestrahlung sollte individuell der Tumorart und den vorliegenden Mutationen angepasst werden. Bevor Medikamente in der Klinik angewendet werden können, müssen sie auf nicht-malignem Gewebe getestet werden, um eine mögliche toxische Wirkung auszuschließen. Deshalb wurden in der vorliegenden Arbeit die zwei humane Hautfibroblastenlinien HFib1 und HFib2 nach dem simultanen Behandlungsschema mit Hsp90 Inhibitoren und Bestrahlung behandelt. Diese Arbeit zeigte, dass NVP-AUY922 und NVP-BEP800 Tumorzelllinien für die Bestrahlung sensibilisieren, wohingegen der Einfluss von Hsp90 Inhibitoren auf normale Fibroblasten geringer war. Der exakte Mechanismus der Selektivität der Hsp90 Inhibitoren auf Krebszellen ist aber noch unbekannt und erfordert weitere Experimente. Die Behandlung mit N-terminalen Hsp90 Inhibitoren, zum Beispiel mit NVP-AUY922 oder mit NVP-BEP800, induziert die Hitzeschockantwort und unter anderem die Hochregulierung von Hsp70 (Niewidok et al. 2012). Hsp70 ist bekannt für seine starken anti-apoptotischen Eigenschaften, die das therapeutische Potenzial der Hsp90 Inhibitoren reduzieren können. Die Behandlung mit siRNA reduzierte die von NVP-AUY922 induzierte Hsp70-Überexpression, aber beeinflusste nicht die Strahlenempfindlichkeit der Tumorzelllinien A549 und SNB19. Die Transfektion mit siRNA hat bewiesen, dass die Hsp70 Inhibition als eine Unterstützung der Hsp90 Inhibition dienen kann. Dies ist jedoch eine kurzzeitige Methode der Hemmung und alternative Methoden zur Hemmung der Hsp70 Aktivitäten nötig sind. Die in dieser Arbeit gewonnen Erkenntnisse erläutern die Effekte, die von zwei neuartigen Hsp90 Inhibitoren NVP-AUY922 und NVP-BEP800 in Kombination mit Bestrahlung induziert werden, sowohl in Tumorzelllinien als auch in normalen Hautfibroblasten. Hsp70-Silencing wurde als Methode zur Erhöhung des radiosensibilisierenden Potenzials des Inhibitor NVP-AUY922 getestet. Alle diese Resultate zusammen sprechen für eine Anwendung von NVP-AUY922 und NVP-BEP800 in klinischen Studien, die alleine oder in Kombination mit Bestrahlung erfolgen könnte. KW - Tumorzelle KW - Strahlenbiologie KW - Strahlenempfindlichkeit KW - Hitzeschockproteine KW - Tumorzellen KW - nicht-maligne Zellen KW - radiation biology KW - radiosensitization KW - heat shock proteins KW - tumor cell lines KW - Hitzeschock-Proteine KW - Krebsforschung Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-78728 ER - TY - THES A1 - Ebel, Lars Frederik T1 - Molecular Beam Epitaxy and Characterization of Ferromagnetic Bulk and Thin (Ga,Mn)As Layers/Heterostructures T1 - Molekularstrahlepitaxie und Charakterisierung von dicken und dünnen ferromagnetischen (Ga,Mn)As Schichten/Heterostrukturen N2 - Die vorgelegte Arbeit untersucht den ferromagnetischen Halbleiter (Ga,Mn)As mit seinen komplexen Eigenschaften im Hinblick auf die Optimierung der Materialeigenschaften sehr dünner (4 nm) (Ga,Mn)As Schichten, welche mit der Technologie der Molekularstrahlepitaxie (MBE) hergestellt wurden. Zuerst werden die strukturellen, ferromagnetischen und elektrischen Eigenschaften von (Ga,Mn)As vorgestellt. Die Einflüsse von Punktdefekten, Grenzflächen- und Oberflächen-Effekten auf dicke und dünne (Ga,Mn)As Schichten werden mit Hilfe von vereinfachten, selbstkonsistenten Berechnungen der Bandkantenverläufe diskutiert. Der Experimental-Teil ist in drei Teile unterteilt: Der erste Teil untersucht den Einfluss der epitaktischen Wachstumsbedingungen auf die elektrischen und magnetischen Eigenschaften von dicken (70 nm) (Ga,Mn)As Schichten. Der zweite Teil führt ein alternatives, parabolisches Mn-Dotierprofil mit effektiver Schichtdicke von 4 nm ein im Vergleich zu einer gleich dünnen Schicht mit homogenem Mn-Dotierprofil. Es konnten einerseits verbesserte Eigenschaften dieser parabolischen Schicht erreicht werden, anderseits sind die magnetischen und elektrischen Eigenschaften vergleichbar zu dicken (Ga,Mn)As Schichten mit gleichem Mn-Gehalt von 4%. MBE Wachstumsbedingungen für (Ga,Mn)As Schichten mit parabolischem Mn-Dotierprofil und verringertem nominellem Mn-Gehalt von 2.5% wurden ebenfalls untersucht. Ein schmales Wachstumsfenster wurde hierbei ermittelt, in dem die Tieftemperatur-Eigenschaften verbessert sind. Der letzte Teil der Arbeit präsentiert eine Anwendung der magnetischen Anisotropiekontrolle einer dicken (Ga,Mn)As Schicht. N2 - The present thesis studies the (Ga,Mn)As material in terms of optimization of very thin (4 nm) (Ga,Mn)As layers, epitaxially fabricated by the molecular beam epitaxy (MBE) technology. First of all, the ferromagnetic semiconductor (Ga,Mn)As with its structural, magnetic and electrical properties is introduced. The influences of point defects, interface and surface effects on bulk and thin (Ga,Mn)As layers are discussed by simplified self-consistent band alignment calculations. The experimental part is divided in three blocks: The first part studies the influence of epitaxial growth parameter conditions on electrical and magnetic properties of bulk (70 nm) (Ga,Mn)As layers. The second part introduces an alternative, parabolical Mn doping-profile instead of a 4 nm layer with a homogeneous Mn doping-profile. Improved properties of the parabolic layer have been observed as well as comparable magnetic and electrical properties to bulk (Ga,Mn)As layers, both with a Mn content of 4%. MBE growth parameters for the (Ga,Mn)As layers with a parabolically graded Mn profile and lowered nominal Mn content of 2.5% have been investigated. A narrow growth window has been found in which low-temperature (LT) layer properties are improved. The last part of this thesis presents an application of magnetic anisotropy control of a bulk (Ga,Mn)As layer. KW - Molekularstrahlepitaxie KW - ferromagnetische Halbleiter KW - magnetische Anisotropie KW - GaMnAs KW - Molecular Beam Epitaxy KW - Ferromagnetic Semiconductors KW - Magnetic Anisotropy KW - GaMnAs KW - Galliumarsenid KW - Manganarsenide KW - Magnetischer Halbleiter Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-83942 ER - TY - THES A1 - Pohl, Christoph T1 - Silicon Based MBE of Manganese-Silicide and Silicon-Suboxide T1 - Silizium basierte MBE von Mangansilizid und Siliziumsuboxid N2 - The present thesis deals with the fabrication, optimization of growth process and characterization of silicon based materials with molecular beam epitaxy. Two material systems are investigated in the course of this work: silicon/silicon suboxide multilayer structures and mono manganese silicide thin films. Mono manganese silicide (MnSi) is grown on Si(111) substrates with an hydrogen passivated surface, that is prepared by wet chemical processes. The growth start is performed by deposition of an amorphous Mn wetting layer that is subsequently annealed to form a MnSi seed layer on which the MnSi molecular beam epitaxy (MBE) is achieved. An amorphous or a crystalline Si cap layer is deposited onto the MnSi film to finalize the growth process and protect the sample from oxidation. With Raman spectroscopy it is shown that the crystalline cap layer is in fact single crystalline silicon. Results of x-ray diffraction and Raman spectroscopy confirm the growth of mono manganese silicide in contrast to other existing manganese silicide phases. In addition, in-plane and out-of-plane residual strain, and twinning of the MnSi thin film is detected with x-ray diffraction of symmetric and asymmetric reflections. Orientation between the Si substrate and the MnSi film is determined with the parallel lattice planes MnSi(210) and Si(511). Transport measurements show a T^2 dependence of the resistivity below 30K and metallic behavior above, a magneto resistance of 0.9% and an unusual memory like effect of the resistance for an in-plane magnetic field sweep measurement. Silicon/Silicon suboxide (SiOx) multilayer structures are grown on Si(100) by interrupting the Si growth and oxidizing the surface with molecular oxygen. During oxidation the RHEED pattern changes from the Si(2x1) reconstruction to an amorphous pattern. When silicon growth is resumed a spotty RHEED pattern emerges, indicating a rough, three dimensional surface. The rough surface can be smoothed out with Si growth at substrate temperatures between 600°C and 700°C. Measurements with transmission electron microscopy show that a silicon suboxide layer of about 1nm embedded in single crystalline silicon is formed with the procedure. Multilayer structures are achieved by repeating the oxidation procedure when the Si spacer layer has a smooth and flat surface. The oxygen content of the suboxide layers can be varied between 7.6% and 26.8%, as determined with secondary ion mass spectrometry and custom-built simulations models for the x-ray diffraction. Structural stability of the multilayer structures is investigated by x-ray diffraction before and after rapid thermal annealing. For temperatures up to 1000°C the multilayer structures show no modification of the SiOx layer in x-ray diffraction. N2 - Die vorgelegte Arbeit handelt von der Herstellung siliziumbasierter Materialien mittels Molekularstrahlepitaxie, der Charakterisierung der Proben und der Optimierung der Wachstumsprozesse. Zwei Materialsysteme werden in dieser Arbeit behandelt: Silizium/Siliziumsuboxid Vielschichtstrukturen und dünne Schichten Mono-Mangansilizid. Mono-Mangansilizid (MnSi) wird auf Wasserstoff passivierten Si(111)-Substraten gewachsen. Für den Wachstumsstart wird eine amorphe Schicht Mangan auf den Si-Wafer abgeschieden und anschließend getempert. Dieser Prozess erzeugt eine ultra dünne Schicht MnSi, die als Keimschicht für das Wachstum dient. Zum Abschluss des Wachstums wird die MnSi-Schicht mit einer amorphen oder einkristallinen Deckschicht vor dem Oxidieren an der Luft geschützt. Das einkristalline Überwachsen der MnSi-Schicht ist mittels Ramanspektroskopie bestätigt. Röntgendiffraktometrie und Ramanspektroskopie bestätigen, dass es sich bei der gewachsenen Schicht um MnSi handelt und nicht um die manganreiche oder siliziumreiche Phasen von Mangansilizid. Anhand der Röntgendiffraktometrie von symmetrischen und asymmetrischen Reflektionen wird die laterale und vertikale Restverspannung gemessen, zusätzlich wird die Entstehung von Zwillingen in der Schicht gezeigt. Die Orientierung der MnSi-Schicht relativ zum Si Substrat ist anhand der parallelen Netzebenen MnSi(210) und Si(511) bestimmt. Transportmessungen an den Schichten zeigen unterhalb von 30K eine T^2-Abhängigkeit des spezifischen Widerstands, oberhalb metallisches Verhalten. Der Magneto Widerstand der MnSi Schicht beträgt 0.9%. Bei einem Magnetfeldsweep in der Schichtebene wird ein kurioses, dem Memory-Effekt ähnliches Verhalten beobachtet. Silizium/Siliziumsuboxid (SiOx)-Vielschichtstrukturen werden auf Si(100) Substraten gewachsen. Das Siliziumwachstum wird unterbrochen und die Probenoberfläche mit molekularem Sauerstoff oxidiert. Dabei verändert sich das RHEED-Muster von der Si-(2x1) Rekonstruktion zu einem amorphen Muster. Das Siliziumwachstum wird nach der Oxidation fortgesetzt und im RHEED entsteht dabei ein Punktmuster das von einer rauen, drei-dimensionalen Oberfläche zeugt. Durch Siliziumwachstum bei Substrattemperaturen zwischen 600°C und 700°C wird die Oberfläche wieder geglättet. Aufnahmen mit dem Transmissionselektronenmikroskop zeigen, dass bei diesem Wachstum eine 1nm dicke SiOx-Schicht eingebettet zwischen einkristalline Siliziumschichten entsteht. Wenn die Siliziumoberfläche wieder glatt ist, kann durch wiederholen der Wachstumssequenz eine Vielschichtstruktur hergestellt werden. Der Sauerstoffgehalt der hergestellten Suboxidschichten wurde mittels Sekundärionen-Massenspektrometrie und eigens zu diesem Zweck angepassten Röntgendiffraktometrie-Simulationen auf 7.6% bis 26.8% bestimmt. Die strukturelle Stabilität der Proben wurde mit Röntgendiffraktometrie vor und nach kurzem Hochtemperaturtempern untersucht. Bei Temperaturen bis 1000°C kann mittels Röntgendiffraktometrie keine Änderung der Si/SiOx Vielschicht-Strukturen festgestellt werden. KW - Molekularstrahlepitaxie KW - Siliciumdioxid KW - Mangansilicide KW - Mangansilizid KW - Suboxid KW - Manganesesilicide KW - Siliconsuboxide KW - Silicium KW - Herstellung KW - Halbleiter KW - Mangan Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-83757 ER -