TY - JOUR A1 - Kistler, Andreas D. A1 - Siwy, Justyna A1 - Frank, Breunig A1 - Jeevaratnam, Praveen A1 - Scherl, Alexander A1 - Mullen, William A1 - Warnock, David G. A1 - Wanner, Christoph A1 - Hughes, Derralynn A. A1 - Mischak, Harald A1 - Wüthrich, Rudolf P. A1 - Serra, Andreas L. T1 - A Distinct Urinary Biomarker Pattern Characteristic of Female Fabry Patients That Mirrors Response to Enzyme Replacement Therapy JF - PLoS ONE N2 - Female patients affected by Fabry disease, an X-linked lysosomal storage disorder, exhibit a wide spectrum of symptoms, which renders diagnosis, and treatment decisions challenging. No diagnostic test, other than sequencing of the alpha-galactosidase A gene, is available and no biomarker has been proven useful to screen for the disease, predict disease course and monitor response to enzyme replacement therapy. Here, we used urine proteomic analysis based on capillary electrophoresis coupled to mass spectrometry and identified a biomarker profile in adult female Fabry patients. Urine samples were taken from 35 treatment-naive female Fabry patients and were compared to 89 age-matched healthy controls. We found a diagnostic biomarker pattern that exhibited 88.2% sensitivity and 97.8% specificity when tested in an independent validation cohort consisting of 17 treatment-naive Fabry patients and 45 controls. The model remained highly specific when applied to additional control patients with a variety of other renal, metabolic and cardiovascular diseases. Several of the 64 identified diagnostic biomarkers showed correlations with measures of disease severity. Notably, most biomarkers responded to enzyme replacement therapy, and 8 of 11 treated patients scored negative for Fabry disease in the diagnostic model. In conclusion, we defined a urinary biomarker model that seems to be of diagnostic use for Fabry disease in female patients and may be used to monitor response to enzyme replacement therapy. KW - Chronic kidney-disease KW - Onset hypertrophic cardiomyopathy KW - Mass-spectrometry KW - Alpha-galactosidase KW - Hemodialysis-patients KW - Clinical proteomics KW - Young-patients KW - Discovery KW - Globotriaosylceramide KW - Prevalence Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-133526 VL - 6 IS - 6 ER - TY - BOOK A1 - Falk, Michael A1 - Marohn, Frank A1 - Michel, René A1 - Hofmann, Daniel A1 - Macke, Maria A1 - Tewes, Bernward A1 - Dinges, Peter A1 - Spachmann, Christoph A1 - Englert, Stefan T1 - A First Course on Time Series Analysis : Examples with SAS N2 - The analysis of real data by means of statistical methods with the aid of a software package common in industry and administration usually is not an integral part of mathematics studies, but it will certainly be part of a future professional work. The present book links up elements from time series analysis with a selection of statistical procedures used in general practice including the statistical software package SAS. Consequently this book addresses students of statistics as well as students of other branches such as economics, demography and engineering, where lectures on statistics belong to their academic training. But it is also intended for the practician who, beyond the use of statistical tools, is interested in their mathematical background. Numerous problems illustrate the applicability of the presented statistical procedures, where SAS gives the solutions. The programs used are explicitly listed and explained. No previous experience is expected neither in SAS nor in a special computer system so that a short training period is guaranteed. This book is meant for a two semester course (lecture, seminar or practical training) where the first three chapters can be dealt within the first semester. They provide the principal components of the analysis of a time series in the time domain. Chapters 4, 5 and 6 deal with its analysis in the frequency domain and can be worked through in the second term. In order to understand the mathematical background some terms are useful such as convergence in distribution, stochastic convergence, maximum likelihood estimator as well as a basic knowledge of the test theory, so that work on the book can start after an introductory lecture on stochastics. Each chapter includes exercises. An exhaustive treatment is recommended. Chapter 7 (case study) deals with a practical case and demonstrates the presented methods. It is possible to use this chapter independent in a seminar or practical training course, if the concepts of time series analysis are already well understood. This book is consecutively subdivided in a statistical part and an SAS-specific part. For better clearness the SAS-specific parts are highlighted. This book is an open source project under the GNU Free Documentation License. KW - Zeitreihenanalyse KW - Box-Jenkins-Verfahren KW - SAS KW - Zustandsraummodelle KW - Time Series Analysis KW - State-Space Models KW - Frequency Domain KW - Box–Jenkins Program Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-56489 N1 - Version: 2011-March-01 ER - TY - INPR A1 - Nassourou, Mohamadou T1 - A Knowledge-based Hybrid Statistical Classifier for Reconstructing the Chronology of the Quran N2 - Computationally categorizing Quran’s chapters has been mainly confined to the determination of chapters’ revelation places. However this broad classification is not sufficient to effectively and thoroughly understand and interpret the Quran. The chronology of revelation would not only improve comprehending the philosophy of Islam, but also the easiness of implementing and memorizing its laws and recommendations. This paper attempts estimating possible chapters’ dates of revelation through their lexical frequency profiles. A hybrid statistical classifier consisting of stemming and clustering algorithms for comparing lexical frequency profiles of chapters, and deriving dates of revelation has been developed. The classifier is trained using some chapters with known dates of revelation. Then it classifies chapters with uncertain dates of revelation by computing their proximity to the training ones. The results reported here indicate that the proposed methodology yields usable results in estimating dates of revelation of the Quran’s chapters based on their lexical contents. KW - Text Mining KW - Maschinelles Lernen KW - text categorization KW - Bayesian classifier KW - distance-based classifier KW - Quran Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-54712 ER - TY - THES A1 - Mark, Stefan T1 - A Magnetic Semiconductor based Non-Volatile Memory and Logic Element T1 - Ein auf magnetischen Halbleiter basierendes nicht-flüchtiges Speicher- und Logik-Element N2 - For the realization of a programmable logic device, or indeed any nanoscale device, we need a reliable method to probe the magnetization direction of local domains. For this purpose we extend investigations on the previously discovered tunneling anisotropic magneto resistance effect (TAMR) by scaling the pillar size from 100 µm down to 260 nm. We start in chapter 4 with a theoretical description of the TAMR effect and show experimental data of miniaturized pillars in chapter 5. With such small TAMR probes we are able to locally sense the magnetization on the 100 nm scale. Sub-micron TAMR and anisotropic magneto resistance (AMR) measurements of sub-millimeter areas show that the behavior of macroscopic (Ga,Mn)As regions is not that of a true macrospin, but rather an ensemble average of the behavior of many nearly identical macrospins. This shows that the magnetic anisotropies of the local regions are consistent with the behavior extracted from macroscopic characterization. A fully electrically controllable read-write memory device out the ferromagnetic semiconductor (Ga,Mn)As is presented in chapter 6. The structure consists of four nanobars which are connected to a circular center region. The first part of the chapter describes the lithography realization of the device. We make use of the sub-micron TAMR probes to read-out the magnetization state of a 650 nm central disk. Four 200 nm wide nanobars are connected to the central disk and serve as source and drain of a spin-polarized current. With the spin-polarized current we are able to switch the magnetization of the central disk by means of current induced switching. Injecting polarized holes with a spin angular momentum into a magnetic region changes the magnetization direction of the region due to the p-d exchange interaction between localized Mn spins and itinerant holes. The magnetization of the central disk can be controlled fully electrically and it can serve as one bit memory element as part of a logic device. In chapter 7 we discuss the domain wall resistance in (Ga,Mn)As. At the transition from nanobars to central disk we are able to generate 90° and 180° domain walls and measure their resistance. The results presented from chapter 5 to 7 combined with the preexisting ultracompact (Ga,Mn)As-based memory cell of ref. [Papp 07c] are the building blocks needed to realize a fully functioning programmable logic device. The work of ref. [Papp 07c] makes use of lithographically engineered strain relaxation to produce a structure comprised of two nanobars with mutually orthogonal uniaxial easy axes, connected by a narrow constriction. Measurements showed that the resistance of the constriction depends on the relative orientation of the magnetization in the two bars. The programmable logic device consists of two central disks connected by a small constriction. The magnetization of the two central disks are used as the input bits and the constriction serves as the output during the logic operation. The concept is introduced in the end of chapter 6 and as an example for a logic operation an XOR gate is presented. The functionality of the programmable logic scheme presented here can be straightforwardly extended to produce multipurpose functional elements, where the given geometry can be used as various different computational elements depending on the number of input bits and the chosen electrical addressing. The realization of such a programmable logic device is shown in chapter 8, where we see that the constriction indeed can serve as a output of the logic operation because its resistance is dependent on the relative magnetization state of both disks. Contrary to ref. [Papp 07c], where the individual magnetic elements connected to the constriction only have two non-volatile magnetic states, each disk in our scheme connected to the constriction has four non-volatile magnetic states. Switching the magnetization of a central disk with an electrical current does not only change the TAMR read-out of the respective disk, it also changes the resistance of the constriction. The resistance polar plot of the constriction maps the relative magnetization states of the individual disks. The presented device design serves as an all-electrical, all-semiconductor logic element. It combines a memory cell and data processing in a single monolithic paradigm. N2 - Für die Realisierung eines programmierbaren Logikelements oder beliebiger nanometer großer Bauteile, brauchen wir eine verlässlige Methode, um die Magnetisierungsrichtung lokaler Domänen auzulesen. Dafür erweitern wir die Untersuchungen an TAMR (tunneling magneto resistance) Strukturen und skalieren die Fläche des Tunnelkontakts von 100 µm auf 260 nm. In Kapitel 4 geben wir zunächst eine theoretische Beschreibung des TAMR Effekts und zeigen darauf im folgenden Kapitel 5 experimentelle Daten der miniaturisierten Tunnelkontakte. Mit diesen TAMR-Kontakten ist es möglich die Magnetisierung lokal in einer Grössenordnung von 100 nm zu detektieren. Sub-micron TAMR-Messungen und anisotrope Magnetowiderstandmessungen (AMR) an sub-millimeter Gebieten zeigen, dass das Verhalten von makrokopischen (Ga,Mn)As nicht das eines Makrospins ist, sondern ein Ensembledurchschnitt von vielen fast identischen Makrospins. Dieses Ergebnis ist mit der makroskopischen Beschreibung der lokalen magnetischen Aniotropien konform.\\ Ein rein elektrisch kontrollierbares Read-Write Speicherelement aus dem ferromagnetischen Halbleiter (Ga,Mn)As wird in Kapitel 6 gezeigt. Das Element besteht aus vier 200 nm breiten Streifen, die mit einer kreisförmigen zentralen Disc verbunden sind. Der erste Teil des Kapitels beschreibt die einzelnen Lithographieschritte zur Herstellung des Elements. Zum Auslesen der Magnetisierungsrichtung der zentralen Disc mit einem Durchmesser von 650 nm verwenden wir einen miniaturisierten TAMR-Kontakt. Die 200 nm breiten Streifen dienen als Quelle eines spinpolarisierten Stromes in die zentrale Disc. Das Injezieren von polarisierten Löchern mit einem Spin-Drehimpuls in eine magnetische Region verändert die Magnetisierung der Region durch p-d Austauschwechselwirkung zwischen lokalisierten Mn-Spins und den Löchern. Die Magnetisierung der zentralen Disc kann rein elektrisch kontrolliert werden and als Bit eines Logikelementes verwendet werden. In Kapitel 7 untersuchen wir den Domänenwiderstand in (Ga,Mn)As. Am Übergang von den Streifen zur zentralen Disc ist es möglich 90°- und 180° Domänenwände zu erzeugen und deren Widerstand zu messen.\\ Die Ergebnisse von Kapitel 5 bis 7, kombiniert mit dem bereits existierenden Ergebnissen einer ultrakompakten (Ga,Mn)As-basierenden Speicherzelle von Ref. [Papp 07c], sind die Schlüsselelemente die man zur Realisierung eines programmierbaren Logikelements benötigt. Die Arbeit von Referenz [Papp 07c] nutzt Lithographie induzierte Deformationsrelaxation, um eine Struktur zu erzeugen, die aus zwei senkrechten Streifen besteht und durch eine Verengung verbunden sind. Der Widerstand dieser Verengung ist von der relativen Magnetisierungsorientierung der beiden Streifen abhängig. Das programmierbare Logikelement besteht aus zwei zentralen Discs, die mittels einer schmalen Verengung verbunden sind. Die Magnetisierung der beiden zentralen Discs dienen als Eingänge und die Verengung als Ausgang während der Logikoperation. Das Konzept wird am Ende des sechsten Kapitels eingeführt und als Beispiel für eine Logikoperation wird ein XOR-Gate präsentiert. Die Funktionalität des hier gezeigten programmierbaren Logikschemas kann Problemlos auf ein multifunktionales Element erweitert werden. Diese Geometrie kann abhängig von der Anzahl der Eingänge und der gewählten Adressierung für verschiedene Rechenelemente genutzt werden. \\ Die Realisierung eines programmierbaren Logikelements ist in Kapitel 8 gezeigt. Der Widerstand der Verengung hängt von der relativen Magnetisierungsrichtung der beiden zentralen Discs ab und wird als Ausgang während der Logikoperation verwendet. Im Gegensatz zu Referenz [Papp 07c], indem die einzelnen über die Verengung verbundenen magnetischen Elemente jeweils nur zwei nicht-flüchtige magnetische Zustände besitzen, hat jede zentrale Disc in unserem Schema vier nicht-flüchtige magnetische Zustände. Das Verändern der Magnetisierungsrichtung einer zentralen Disc durch einen elektrischen Strom kann durch den jeweiligen TAMR-Kontakt und durch die Widerstandänderung der Verengung gemessen werden. Der Widerstands-Fingerabdruck (resistance polar plot) der Verengung zeigt die verschiedenen relativen Magnetisierungszutände der zentralen Discs.\\ Das hier präsentierte Konzept dient als reines Halbleiter und rein-elektrisches Logikelement. Es kombiniert eine Speicherzelle und Datenverarbeitung in einem neuartigen monolithischen Bauelement. KW - Magnetischer Halbleiter KW - Magnetische Halbleiter KW - Magnetische Anisotropien KW - Spinelektronik KW - magnetic semiconductors KW - magnetic anisotropy KW - Magnetic properties of thin films interfaces KW - Spinelectronic KW - Magnetische Anisotropie KW - Spintronik Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-71223 ER - TY - JOUR A1 - Lin, Hang T1 - A Mixed Bag of Results: Village Elections in Contemporary China N2 - While there is only little transformation to the absolute power of the party-state to be detected, some grassroots democratic experiments, however, are receiving enormous attention of the world, especially village elections. Nevertheless, this preliminary exercise of democracy is widely characterized as a mixed bag of results. Since its first conduction, it has experienced immense development and bought great impact not only on different rural political institutions, but also on common mass villagers, as well as changes to the local governance. But at the same time, the limitations of the factual effectiveness of these elections can hardly be underestimated and such aspects as the standardization of electoral procedures are still to be further improved. Moreover, given the wide variations across Chinese countryside and the strong oppositions from all levels, the future of China’s village elections remain hard to gauge. KW - China KW - Politik KW - Chinese politics KW - Village election KW - Local governance KW - Rural politics Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-68684 ER - TY - JOUR A1 - Sommer, Claudia A1 - Richter, Helmut A1 - Rogausch, Jan P. A1 - Frettloh, Jule A1 - Lungenhausen, Margitta A1 - Maier, Christoph T1 - A modified score to identify and discriminate neuropathic pain: a study on the German version of the neuropathic pain symptom inventory (NPSI) N2 - Background: Neuropathic pain must be correctly diagnosed for optimal treatment. The questionnaire named Neuropathic Pain Symptom Inventory (NPSI) was developed in its original French version to evaluate the different symptoms of neuropathic pain. We hypothesized that the NPSI might also be used to differentiate neuropathic from non-neuropathic pain. Methods: We translated the NPSI into German using a standard forward-backward translation and administered it in a case-control design to patients with neuropathic (n = 68) and non-neuropathic pain (headache and osteoarthritis, n = 169) to validate it and to analyze its discriminant properties, its sensitivity to change, and to detect neuropathic pain subgroups with distinct profiles. Results: Using a sum score (the NPSI-G score), we found sensitivity to change (r between 0.37 and 0.5 for pain items of the graded chronic pain scale) and could distinguish between neuropathic and other pain on a group basis, but not for individual patients. Post hoc development of a discriminant score with optimized diagnostic properties to distinguish neuropathic pain from non-neuropathic pain resulted in an instrument with high sensitivity (91%) and acceptable specificity (70%). We detected six different pain profiles in the patient group with neuropathic pain; three profiles were found to be distinct. Conclusions: The NPSI-G potentially combines the properties of a diagnostic tool and an instrument to identify subtypes of neuropathic pain. KW - Neuralgie KW - NPSI Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-68716 ER - TY - JOUR A1 - Schramm, Sabine A1 - Fraune, Johanna A1 - Naumann, Ronald A1 - Hernandez-Hernandez, Abrahan A1 - Höög, Christer A1 - Cooke, Howard J. A1 - Alsheimer, Manfred A1 - Benavente, Ricardo T1 - A Novel Mouse Synaptonemal Complex Protein Is Essential for Loading of Central Element Proteins, Recombination, and Fertility N2 - The synaptonemal complex (SC) is a proteinaceous, meiosis-specific structure that is highly conserved in evolution. During meiosis, the SC mediates synapsis of homologous chromosomes. It is essential for proper recombination and segregation of homologous chromosomes, and therefore for genome haploidization. Mutations in human SC genes can cause infertility. In order to gain a better understanding of the process of SC assembly in a model system that would be relevant for humans, we are investigating meiosis in mice. Here, we report on a newly identified component of the murine SC, which we named SYCE3. SYCE3 is strongly conserved among mammals and localizes to the central element (CE) of the SC. By generating a Syce3 knockout mouse, we found that SYCE3 is required for fertility in both sexes. Loss of SYCE3 blocks synapsis initiation and results in meiotic arrest. In the absence of SYCE3, initiation of meiotic recombination appears to be normal, but its progression is severely impaired resulting in complete absence of MLH1 foci, which are presumed markers of crossovers in wild-type meiocytes. In the process of SC assembly, SYCE3 is required downstream of transverse filament protein SYCP1, but upstream of the other previously described CE–specific proteins. We conclude that SYCE3 enables chromosome loading of the other CE–specific proteins, which in turn would promote synapsis between homologous chromosomes. KW - Maus KW - Genetik KW - Cytologie Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-68895 ER - TY - INPR A1 - Nassourou, Mohamadou T1 - A Rule-based Statistical Classifier for Determining a Base Text and Ranking Witnesses In Textual Documents Collation Process N2 - Given a collection of diverging documents about some lost original text, any person interested in the text would try reconstructing it from the diverging documents. Whether it is eclecticism, stemmatics, or copy-text, one is expected to explicitly or indirectly select one of the documents as a starting point or as a base text, which could be emended through comparison with remaining documents, so that a text that could be designated as the original document is generated. Unfortunately the process of giving priority to one of the documents also known as witnesses is a subjective approach. In fact even Cladistics, which could be considered as a computer-based approach of implementing stemmatics, does not present or recommend users to select a certain witness as a starting point for the process of reconstructing the original document. In this study, a computational method using a rule-based Bayesian classifier is used, to assist text scholars in their attempts of reconstructing a non-existing document from some available witnesses. The method developed in this study consists of selecting a base text successively and collating it with remaining documents. Each completed collation cycle stores the selected base text and its closest witness, along with a weighted score of their similarities and differences. At the end of the collation process, a witness selected more often by majority of base texts is considered as the probable base text of the collection. Witnesses’ scores are weighted using a weighting system, based on effects of types of textual modifications on the process of reconstructing original documents. Users have the possibility to select between baseless and base text collation. If a base text is selected, the task is reduced to ranking the witnesses with respect to the base text, otherwise a base text as well as ranking of the witnesses with respect to the base text are computed and displayed on a histogram. KW - Textvergleich KW - Text Mining KW - Gothenburg Modell KW - Bayes-Klassifikator KW - Textual document collation KW - Base text KW - Gothenburg model KW - Bayesian classifier KW - Textual alterations weighting system Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-57465 ER - TY - JOUR A1 - Katja, Schulze A1 - López, Diana A. A1 - Tillich, Ulrich M. A1 - Frohme, Marcus T1 - A simple viability analysis for unicellular cyanobacteria using a new autofluorescence assay, automated microscopy, and ImageJ JF - BMC Biotechnology N2 - Background Currently established methods to identify viable and non-viable cells of cyanobacteria are either time-consuming (eg. plating) or preparation-intensive (eg. fluorescent staining). In this paper we present a new and fast viability assay for unicellular cyanobacteria, which uses red chlorophyll fluorescence and an unspecific green autofluorescence for the differentiation of viable and non-viable cells without the need of sample preparation. Results The viability assay for unicellular cyanobacteria using red and green autofluorescence was established and validated for the model organism Synechocystis sp. PCC 6803. Both autofluorescence signals could be observed simultaneously allowing a direct classification of viable and non-viable cells. The results were confirmed by plating/colony count, absorption spectra and chlorophyll measurements. The use of an automated fluorescence microscope and a novel ImageJ based image analysis plugin allow a semi-automated analysis. Conclusions The new method simplifies the process of viability analysis and allows a quick and accurate analysis. Furthermore results indicate that a combination of the new assay with absorption spectra or chlorophyll concentration measurements allows the estimation of the vitality of cells. KW - variability analysis KW - unicellular cyanobacteria KW - autofluorescence Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-137735 VL - 11 IS - 118 ER - TY - JOUR A1 - Eckhardt, Manon A1 - Anders, Maria A1 - Muranyi, Walter A1 - Heilemann, Mike A1 - Krijnse-Locker, Jacomine A1 - Müller, Barbara T1 - A SNAP-Tagged Derivative of HIV-1-A Versatile Tool to Study Virus-Cell Interactions JF - PLoS ONE N2 - Fluorescently labeled human immunodeficiency virus (HIV) derivatives, combined with the use of advanced fluorescence microscopy techniques, allow the direct visualization of dynamic events and individual steps in the viral life cycle. HIV proteins tagged with fluorescent proteins (FPs) have been successfully used for live-cell imaging analyses of HIV-cell interactions. However, FPs display limitations with respect to their physicochemical properties, and their maturation kinetics. Furthermore, several independent FP-tagged constructs have to be cloned and characterized in order to obtain spectral variations suitable for multi-color imaging setups. In contrast, the so-called SNAP-tag represents a genetically encoded non-fluorescent tag which mediates specific covalent coupling to fluorescent substrate molecules in a self-labeling reaction. Fusion of the SNAP-tag to the protein of interest allows specific labeling of the fusion protein with a variety of synthetic dyes, thereby offering enhanced flexibility for fluorescence imaging approaches. Here we describe the construction and characterization of the HIV derivative HIV(SNAP), which carries the SNAP-tag as an additional domain within the viral structural polyprotein Gag. Introduction of the tag close to the C-terminus of the matrix domain of Gag did not interfere with particle assembly, release or proteolytic virus maturation. The modified virions were infectious and could be propagated in tissue culture, albeit with reduced replication capacity. Insertion of the SNAP domain within Gag allowed specific staining of the viral polyprotein in the context of virus producing cells using a SNAP reactive dye as well as the visualization of individual virions and viral budding sites by stochastic optical reconstruction microscopy. Thus, HIV(SNAP) represents a versatile tool which expands the possibilities for the analysis of HIV-cell interactions using live cell imaging and sub-diffraction fluorescence microscopy. KW - Human-immunodeficiency-virus KW - Fusion proteins KW - Live cells KW - Fluorescence microscopy KW - Stimulated-emission KW - Plasma-membrane KW - Living cells KW - Real-time KW - TYPE-1 KW - GAG Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-133534 VL - 6 IS - 7 ER - TY - JOUR A1 - Fischer, Roman A1 - Maier, Olaf A1 - Siegemund, Martin A1 - Wajant, Harald A1 - Scheurich, Peter A1 - Pfizenmaier, Klaus T1 - A TNF Receptor 2 Selective Agonist Rescues Human Neurons from Oxidative Stress-Induced Cell Death JF - PLoS ONE N2 - Tumor necrosis factor (TNF) plays a dual role in neurodegenerative diseases. Whereas TNF receptor (TNFR) 1 is predominantly associated with neurodegeneration, TNFR2 is involved in tissue regeneration and neuroprotection. Accordingly, the availability of TNFR2-selective agonists could allow the development of new therapeutic treatments of neurodegenerative diseases. We constructed a soluble, human TNFR2 agonist (TNC-scTNF(R2)) by genetic fusion of the trimerization domain of tenascin C to a TNFR2-selective single-chain TNF molecule, which is comprised of three TNF domains connected by short peptide linkers. TNC-scTNFR2 specifically activated TNFR2 and possessed membrane-TNF mimetic activity, resulting in TNFR2 signaling complex formation and activation of downstream signaling pathways. Protection from neurodegeneration was assessed using the human dopaminergic neuronal cell line LUHMES. First we show that TNC-scTNF(R2) interfered with cell death pathways subsequent to H(2)O(2) exposure. Protection from cell death was dependent on TNFR2 activation of the PI3K-PKB/Akt pathway, evident from restoration of H(2)O(2) sensitivity in the presence of PI3K inhibitor LY294002. Second, in an in vitro model of Parkinson disease, TNC-scTNFR(2) rescues neurons after induction of cell death by 6-OHDA. Since TNFR2 is not only promoting anti-apoptotic responses but also plays an important role in tissue regeneration, activation of TNFR2 signaling by TNC-scTNF(R2) appears a promising strategy to ameliorate neurodegenerative processes. KW - Tumor-necrosis-factor KW - Glutamate-induced excitotoxicity KW - Single-chain TNF KW - Kappa-B pathway KW - Parkinsons-disease KW - Signaling complex KW - Activation KW - Apoptosis KW - Dopamine KW - Ligand Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-133552 VL - 6 IS - 11 ER - TY - JOUR A1 - Rieber, Nikolaus A1 - Graf, Anna A1 - Hartl, Dominik A1 - Urschel, Simon A1 - Belohradsky, Bernd H. A1 - Liese, Johannes T1 - Acellular Pertussis Booster in Adolescents Induces Th1 and Memory CD8+ T Cell Immune Response N2 - In a number of countries, whole cell pertussis vaccines (wcP) were replaced by acellular vaccines (aP) due to an improved reactogenicity profile. Pertussis immunization leads to specific antibody production with the help of CD4+ T cells. In earlier studies in infants and young children, wcP vaccines selectively induced a Th1 dominated immune response, whereas aP vaccines led to a Th2 biased response. To obtain data on Th1 or Th2 dominance of the immune response in adolescents receiving an aP booster immunization after a wcP or aP primary immunization, we analyzed the concentration of Th1 (IL-2, TNF-a, INF-c) and Th2 (IL-4, IL-5, IL-10) cytokines in supernatants of lymphocyte cultures specifically stimulated with pertussis antigens. We also investigated the presence of cytotoxic T cell responses against the facultative intracellular bacterium Bordetella pertussis by quantifying pertussis-specific CD8+ T cell activation following the aP booster immunization. Here we show that the adolescent aP booster vaccination predominantly leads to a Th1 immune response based on IFNgamma secretion upon stimulation with pertussis antigen, irrespective of a prior whole cell or acellular primary vaccination. The vaccination also induces an increase in peripheral CD8+CD69+ activated pertussis-specific memory T cells four weeks after vaccination. The Th1 bias of this immune response could play a role for the decreased local reactogenicity of this adolescent aP booster immunization when compared to the preceding childhood acellular pertussis booster. Pertussis-specific CD8+ memory T cells may contribute to protection against clinical pertussis. KW - Jugend KW - Keuchhusten Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-68960 ER - TY - JOUR A1 - Rudert, Maximilian A1 - Holzapfel, Boris Michael A1 - Jakubietz, Michael T1 - Adjuvant Radiotherapy JF - Deutsches Ärzteblatt International N2 - No abstract available. KW - Soft-tissue sarcoma Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-133571 VL - 108 IS - 33 ER - TY - JOUR A1 - Song, Ning-Ning A1 - Xiu, Jian-Bo A1 - Huang, Ying A1 - Chen, Jia-Yin A1 - Zhang, Lei A1 - Gutknecht, Lise A1 - Lesch, Klaus Peter A1 - Li, He A1 - Ding, Yu-Qiang T1 - Adult Raphe-Specific Deletion of Lmx1b Leads to Central Serotonin Deficiency JF - PLoS ONE N2 - The transcription factor Lmx1b is essential for the differentiation and survival of central serotonergic (5-HTergic) neurons during embryonic development. However, the role of Lmx1b in adult 5-HTergic neurons is unknown. We used an inducible Cre-LoxP system to selectively inactivate Lmx1b expression in the raphe nuclei of adult mice. Pet1-CreER(T2) mice were generated and crossed with Lmx1b(flox/flox) mice to obtain Pet1-CreER(T2); Lmx1b(flox/flox) mice (which termed as Lmx1b iCKO). After administration of tamoxifen, the level of 5-HT in the brain of Lmx1b iCKO mice was reduced to 60% of that in control mice, and the expression of tryptophan hydroxylase 2 (Tph2), serotonin transporter (Sert) and vesicular monoamine transporter 2 (Vmat2) was greatly down-regulated. On the other hand, the expression of dopamine and norepinephrine as well as aromatic L-amino acid decarboxylase (Aadc) and Pet1 was unchanged. Our results reveal that Lmx1b is required for the biosynthesis of 5-HT in adult mouse brain, and it may be involved in maintaining normal functions of central 5-HTergic neurons by regulating the expression of Tph2, Sert and Vmat2. KW - Molecular-genetics KW - Sonic hedgehog KW - Neurons KW - Mice KW - Brain KW - Expression KW - System KW - PET-1 KW - Transporter KW - Disorders Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-133581 VL - 6 IS - 1 ER - TY - THES A1 - Schnabel, Eva T1 - Alcohol and driving-related performance - A comprehensive meta-analysis focusing the significance of the non-significant T1 - Alkohol und fahrrelevante Leistungen - Eine umfassende Metaanalyse N2 - The present work reviews the experimental literature on the acute effects of alcohol on human behaviour related to driving performance. A meta-analysis was conducted which includes studies published between 1954 and 2007 in order to provide a comprehensive knowledge of the substance alcohol. 450 studies reporting 5,300 findings were selected from over 12,000 references after applying certain in- and exclusion criteria. Thus, the present meta-analysis comprises far more studies than reviews on alcohol up to now. In the selected studies, different performance tests were conducted which were relevant for driving. The classification system used in this work assigns these tests to eight categories. The main categories consist of several sub categories classifying the tasks more precisely. The main categories were: (1) visual functions, (2) attention (including vigilance), (3) divided attention, (4) en-/decoding (including information processing and memory), (5) reaction time (including simple reaction time and choice reaction time), (6) psychomotor skills, (7) tracking and (8) driving. In addition to the performance aspect, the classification system takes into account mood and social behaviour variables related to driving safety like tiredness or aggression. Following the evaluation method of vote-counting, the number of significant findings and the number of non-significant findings were summarised per blood alcohol concentration (BAC) group. Thereby, a quantitative estimation of the effects of alcohol depending on the BAC was established, the so-called impairment function, which shows the percentage of significantly impaired findings. In order to provide a general overview of alcohol effects on driving-related performance, a global impairment function was established by aggregating all performance findings. The function is nearly linear with about 30% significant findings at a BAC of 0.05% and 50% significant findings at a BAC of 0.08%. In addition, more specific impairment functions considering only the findings of the single behavioural categories were calculated. The results revealed that impairment depends not only on the BAC, but also clearly differs between most of the performance categories. Tracking and driving performance were most affected by alcohol with impairment beginning at very low BACs of 0.02%. Also psychomotor skills were considerably affected by rather low BACs. Impairment of visual functions and information processing occurred at BACs of 0.04% and increased substantially with higher BACs. Impairment in memory tests could be found with very low BACs of 0.02%, but varied depending on the kind of memory. Performance decrements in divided attention tests could also be found with very low BACs in some studies. Attention started to be impaired at 0.04% BAC, but – as in vigilance tasks – considerable impairment only occurred at higher BACs. Choice reaction time was affected at lower BACs than simple reaction time, which was – together with the critical flicker fusion frequency – the least sensitive parameter to the effects of alcohol. To conclude, most skills which are relevant for the safe operation of a vehicle are clearly impaired by BACs of 0.05%, with motor functions being more affected than cognitive functions and complex tasks more than simple tasks. Generally, the results provided no evidence of a threshold effect for alcohol. There was no driving-related performance category for which a sudden transition from unimpaired to impaired occurred at a particular BAC level. In addition, a comparison was made between the present meta-analysis and two reviews of Moskowitz (Moskowitz & Fiorentino, 2000; Moskowitz & Robinson, 1988). Moskowitz reported much lower BACs at which performance was impaired. The reasons for this discrepancy lies in a different way to review scientific findings. On the one hand, Moskowitz focused on significant findings when selecting studies and findings for his reviews. On the other hand, the evaluation method used by Moskowitz ignored non-significant findings and counted each study once at the lowest BAC for which impairment was found. Those non-significant findings are as important as the significant ones in order to determine thresholds of impairment. Therefore, in contrast to Moskowitz, the present work describes the effects of alcohol with functions considering also the non-significant findings. The significance of the non-significant is emphasized with respect to the selection procedure as well as to the evaluation method. N2 - Die vorliegende Arbeit gibt einen umfassenden Überblick experimenteller Studien, die die akute Wirkung von Alkohol auf fahrrelevante Leistungen untersuchen. Hierzu wurde eine Metaanalyse durchgeführt, in der Studien von 1954 bis 2007 berücksichtigt wurden. Aus über 12.000 Referenzen wurden 450 Studien mit insgesamt 5.300 Befunden nach vorher festgelegten Ein- und Ausschlusskriterien ausgewählt. So umfasst die vorliegende Metaanalyse weit mehr Studien als die bisherigen veröffentlichten Literaturüberlicke. In den ausgewählten Studien kamen verschiedene Leistungstests zur Anwendung, um die Effekte von Alkohol auf fahrrelevante Leistungen zu überprüfen. Diese Tests wurden in acht Kategorien klassifiziert: (1) visuelle Funktionen, (2) Aufmerksamkeit (einschließlich Vigilanz), (3) geteilte Aufmerksamkeit, (4) En-/ Dekodierung (einschließlich Informationsverarbeitung und Gedächtnis), (5) Reaktionszeit (einschließlich Einfachreaktionszeit und Wahlreaktionszeit), (6) psychomotorische Fähigkeiten, (7) Tracking und (8) Fahren. Neben den Leistungsaspekten berücksichtigt das in der vorliegenden Arbeit verwendete Klassifikationssystem auch andere für die Fahrleistung relevante Aspekte der beiden Bereiche subjektives Befinden und soziales Verhalten, wie beispielsweise Müdigkeit oder Aggressivität. Gemäß der Vote-counting-Methode wurde die Anzahl der signifikanten und nicht-signifikanten Befunde für verschiedene Blutalkoholkonzentrationsgruppen zusammengezählt. Daraus ergab sich eine quantitative Schätzung der Effekte von Alkohol in Abhängigkeit der Blutalkoholkonzentration (BAK), die sogenannte Beeinträchtigungsfunktion. Diese stellt den Prozentsatz an signifikanten Befunden, die eine Beeinträchtigung berichteten, dar. Um einen allgemeinen Überblick über Alkohol und die Effekte auf die Fahrleistung zu geben, wurde eine globale Beeinträchtigungsfunktion aufgestellt, in die alle Leistungsbefunde eingegangen sind. Diese Funktion ist nahezu linear mit etwa 30% signifikanten Befunden bei einer BAK von 0,05% und 50% signifikanten Befunde bei einer BAK von 0,08%. Darüber hinaus wurden spezifische Beeinträchtigungsfunktionen berechnet, in denen die jeweiligen Befunde der einzelnen Kategorien berücksichtigt wurden. Die Ergebnisse zeigten, dass die Beeinträchtigung nicht nur von der BAK abhängt, sondern auch von der geforderten Leistung. Tracking- und Fahrleistung waren dabei am stärksten betroffen. Hier zeigten sich bereits bei sehr geringen BAK von 0,02% Beeinträchtigungen. Auch psychomotorische Fähigkeiten wurden beträchtlich durch geringe BAK beeinträchtigt. Eine Beeinträchtigung der visuellen Funktionen und Informationsverarbeitung trat bei einer BAK von 0,04% auf und verstärkte sich deutlich mit höheren BAK. Eine Beeinträchtigung in Gedächtnistests konnte bei sehr geringen BAK von 0,02% gefunden werden, wobei diese in Abhängigkeit von der Art der Gedächtnistests variierte. Eine Abnahme der Leistung in Tests zu geteilter Aufmerksamkeit konnte in einigen Studien ebenfalls bei sehr geringen BAK gefunden werden. Eine Beeinträchtigung der Aufmerksamkeit trat bei einer BAK von 0,04% auf, aber erst bei höheren BAK kam es – wie bei Vigilanzaufgaben – zu erheblichen Beeinträchtigungen. Die Einfachreaktionszeit war zusammen mit der Flicker-Verschmelzungsfrequenz der am wenigsten sensitive Parameter für Alkoholeffekte. Zusammenfassend lässt sich sagen, dass die meisten Fertigkeiten, die für das sichere Führen eines Fahrzeugs relevant sind, ab einer BAK von 0,05% deutlich beeinträchtigt sind. Die motorischen Fertigkeiten sind dabei stärker betroffen als die kognitiven Funktionen, und komplexe Aufgaben stärker als einfache Aufgaben. Generell lieferten die Ergebnisse keinen Hinweis für einen Schwelleneffekt von Alkohol. Das heißt es gab keine fahrrelevante Leistungskategorie, bei der bei einer bestimmten BAK-Stufe ein plötzlicher Übergang von unbeeinträchtigt zu beeinträchtigt auftrat. Um Schwellen für ein Auftreten der Beeinträchtigung zu bestimmen, sind nicht-signifikante Befunde genauso wichtig wie signifikante. Die vorliegende Arbeit hebt die Bedeutung der Nichtsignifikanz sowohl für das Auswahlverfahren der Studien als auch für die Auswertungsmethode explizit hervor und beschreibt die Effekte von Alkohol durch Funktionen, die auch nicht-signifikante Befunde berücksichtigen. KW - Trunkenheit im Verkehr KW - Alkohol KW - Fahrerverhalten KW - Fahren KW - Leistung KW - Review KW - experimentelle Studien KW - Leistungstests KW - Metaanalyse KW - Alcohol KW - performance KW - driving KW - meta-analysis KW - review Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-69959 ER - TY - JOUR A1 - Holzapfel, Boris Michael A1 - Rechl, Hans A1 - Lehner, Stefan A1 - Pilge, Hakan A1 - Gollwitzer, Hans A1 - Steinhauser, Erwin T1 - Alloplastic Reconstruction of the Extensor Mechanism after Resection of Tibial Sarcoma [Research Article] N2 - Reconstruction of the extensor mechanism is essential for good extremity function after endoprosthetic knee replacement following tumor resection. Only a few biological methods have been able to reliably restore a functional extensor mechanism, but they are often associated with significant complication rates. Reattachment of the patellar tendon to the prosthesis using an alloplastic patellar ligament (Trevira cord) can be an appropriate alternative. In vivo and in vitro studies have already shown that complete fibrous ingrowth in polyethylene chords can be seen after a period of six months. However, until now, no biomechanical study has shown the efficacy of an alloplastic cord and its fixation device in providing sufficient stability and endurance in daily life-activity until newly formed scar tissue can take over this function. In a special test bench developed for this study, different loading regimes were applied to simulate loads during everyday life. Failure loads and failuremodes were evaluated. The properties of the cord were compared before and after physiological conditioning. It was shown that rubbing was the mode of failure under dynamic loading. Tensile forces up to 2558N did not result in material failure. Thus, using an artificial cord together with this fixation device, temporary sufficient stable fixation can be expected. KW - Medizin Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-69072 ER - TY - JOUR A1 - Chipperfield, Joseph D. A1 - Dytham, Calvin A1 - Hovestadt, Thomas T1 - An Updated Algorithm for the Generation of Neutral Landscapes by Spectral Synthesis N2 - Background: Patterns that arise from an ecological process can be driven as much from the landscape over which the process is run as it is by some intrinsic properties of the process itself. The disentanglement of these effects is aided if it possible to run models of the process over artificial landscapes with controllable spatial properties. A number of different methods for the generation of so-called ‘neutral landscapes’ have been developed to provide just such a tool. Of these methods, a particular class that simulate fractional Brownian motion have shown particular promise. The existing methods of simulating fractional Brownian motion suffer from a number of problems however: they are often not easily generalisable to an arbitrary number of dimensions and produce outputs that can exhibit some undesirable artefacts. Methodology: We describe here an updated algorithm for the generation of neutral landscapes by fractional Brownian motion that do not display such undesirable properties. Using Monte Carlo simulation we assess the anisotropic properties of landscapes generated using the new algorithm described in this paper and compare it against a popular benchmark algorithm. Conclusion/Significance: The results show that the existing algorithm creates landscapes with values strongly correlated in the diagonal direction and that the new algorithm presented here corrects this artefact. A number of extensions of the algorithm described here are also highlighted: we describe how the algorithm can be employed to generate landscapes that display different properties in different dimensions and how they can be combined with an environmental gradient to produce landscapes that combine environmental variation at the local and macro scales. KW - Landschaft KW - Monte-Carlo-Simulation KW - Brownsche Bewegung Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-68938 ER - TY - THES A1 - Baß, Utz T1 - Analysis of MBE-grown II-VI Hetero-Interfaces and Quantum-Dots by Raman Spectroscopy T1 - Analyse von MBE-gewachsenen II-VI Heterogrenzschichten und Quantenpunkten mittels Ramanspektroskopie N2 - The material system of interest in this thesis are II-VI-semiconductors. The first part of this thesis focuses on the formation of self-assembled CdSe-based quantum dots (QD) on ZnSe. The lattice constants of ZnSe and CdSe differ as much as about 7\% and therefore a CdSe layer grown on top of ZnSe experiences a huge strain. The aspired strain relief constitutes in the self-assembly of QDs (i.e. a roughened layer structure). Additionally, this QD layer is intermixed with Zn as this is also a possibility to decrease the strain in the layer. For CdSe on ZnSe, in Molecular Beam Epitaxy (MBE), various QD growth procedures were analysed with respect to the resulting Cd-content of the non-stoichiometric ternary (Zn,Cd)Se. The evaluation was performed by Raman Spectroscopy as the phonon frequency depends on the Cd-content. The second part of the thesis emphasis on the interface properties of n-ZnSe on n-GaAs. Different growth start procedures of the ZnSe epilayer may lead to different interface configurations with characteristic band-offsets and carrier depletion layer widths. The analysis is mainly focused on the individual depletion layer widths in the GaAs and ZnSe. This non-destructive analysis is performed by evaluating the Raman signal which comprises of phonon scattering from the depleted regions and coupled plasmon-phonon scattering from regions with free carriers. N2 - Im Rahmen dieser Dissertation wurden II-VI Halbleiter untersucht. Der erste Teil behandelt die Selbstorganisation von CdSe basierten Quantenpunkten auf ZnSe. Die Gitterkonstante von ZnSe und CdSe differieren um ca. 7% und daher erfährt eine CdSe Schicht auf ZnSe eine riesige Verspannung. Der angestrebte Abbau dieser Verspannung resultiert in der Selbstorganisation von Quantenpunkten (bzw. einer rauen CdSe-Oberfläche). Zusätzlich bietet die Durchmischung mit Zn eine weitere Möglichkeit die Verspannung zu senken. In der Arbeit wurde mittels Raman Spektroskopie der Einfluss von verschiedenen MBE-Wachstumsmethoden auf den resultierenden Cd-Gehalt der Quantenpunktschicht untersucht. Im zweiten Teil standen die Grenzflächeneigenschaften von n-ZnSe auf n-GaAs im Fokus. Unterschiedliche Wachstumsmethoden dieser Grenzflächen können sich auf verschiedene Eigenschaften auswirken. Insbesondere in der Ausbildung von Verarmungszonen innerhalb der beiden Materialien an der Grenzfläche. Hierzu kam auch Raman Spektroskopie zum Einsatz da sich das Raman Signal aus Streubeiträgen von Phononen aus den verarmten Zonen und aus gekoppelten Plasmon-Phonon Moden aus den Schichten mit freien Ladungsträgern zusammensetzt. KW - Zwei-Sechs-Halbleiter KW - Molekularstrahlepitaxie KW - self-assembly KW - quantum-dots KW - Raman KW - plasmon KW - phonon KW - Wide-gap-Halbleiter KW - n-Halbleiter Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-73413 ER - TY - THES A1 - Kräußling, Michael T1 - Analysis on division patterns and transcriptional activity in embryos from medaka "Oryzias latipes" before the midblastula transition T1 - Analysen zu Teilungsmustern und transkriptioneller Aktivität in Embryonen von Medaka "Oryzias latipes" vor der Midblastula-Transition N2 - Das Studium der Entwicklung von Tieren ist eine der ältesten Disziplinen in der Biologie. Die gesammelten Daten von unzähligen Untersuchungen an den verschiedensten Spezies wurden dazu benutzt, um ein generelles Verständnis des tierischen Lebenszykluses zu formulieren. Ein wichtiges Ergebnis der intensiven Untersuchungen war vor etwa einem Jahrhundert die Entdeckung spezifischer morphologischer Veränderungen, die sich während der Teilungsphase, der Zeitperiode die der Befruchtung und Aktivierung des Eies am Anfang der Embryogenese folgt, vollziehen. Diese Befunde führten schlussendlich zur Formulierung des Konzepts einer „Mid-Blastula Transition“ (MBT). Bisher gibt es nur eine Theorie die die Regulierung der MBT in befriedigender Weise erklärt. Dies ist das Model des Kern/Plasma-Verhältnis, welches sich aus dem Verhältnis DNA-Menge zu Zytoplasmavolumen ableitet. Es erklärt die MBT-Aktivierung durch bisher unbekannte, maternal deponierte Faktoren im Ei, welche die MBT Aktivierung kontrollieren, deren Konzentration allerdings mit jeder Zellteilung verdünnt wird, bis sie schließlich ihre blockierende Funktion verloren haben. Zwar wurde die Existenz dieses Mechanismuses schon in zahlreichen Spezies experimentell bewiesen, allerdings bleibt er nur eine ungenaue Beschreibung der ablaufenden Prozesse und lässt weiterhin viele Fragen unbeantwortet. Vor diesem Hintergrund hat diese Arbeit gezeigt, dass die Zellzyklen in Embryonen von Medaka (Oryzias latipes) ihre Synchronität schon nach dem vierten oder fünften Teilung verlieren, und diese durch ein Teilungsmuster ersetzt wird, das als „metasynchron“ bezeichnet wird. In diesem Teilungsmuster verlaufen die Zellteilungen in Wellen, die im Zentrum des Embryos beginnen und sich von dort nach außen hin radial ausbreiten. Noch ist der Sinn einer auf diese Art verlaufenden Zellteilung unbekannt, auch wenn es verschiedene Theorien gibt die versuchen den zugrunde liegenden Mechanismus zu erklären. Allen voran steht die Theorie eines unterschiedlichen Zugangs zu Faktoren innerhalb des Dotters. Allerdings wird diese Theorie durch die Beobachtungen in verformten Embryonen wiederlegt, in denen sich die Teilungswellen von einer Seite des Embryos zur gegenüberliegenden Seite ausgebreitet haben. Somit bleibt der Mechanismus für diese Art der Zellteilung weiterhin unklar. Nicht zu vergessen ist, dass diese deformierten Embryonen eine der möglichen Konsequenzen asymmetrischer Furchung während einer frühen Zellteilung sind. Asymmetrische Teilungen treten in Medaka in einer erheblichen Anzahl von Embryonen auf und haben einen direkten Einfluss auf die gleichmäßige Verteilung des Zytoplasma. Leider war es nicht möglich die Auswirkungen einer solchen ungleichmäßigen Verteilung aufzudecken, auch wenn man davon ausgehen kann, dass ein ausreichend großes Ungleichgewicht zu unterschiedlichen Zeitpunkten der MBT-Aktivierung in verschiedenen Zellgruppen führen müsste. Ähnliche Beobachtungen wurden bereits in anderen Spezies gemacht, und es wurde vermutet, dass diese in ungleichmäßigen Zellteilungen begründet lagen. Weiterhin wurde bewiesen, dass die zygotische Transkription schon wesentlich vor dem bisher angenommenen frühesten Zeitpunkt aktiv ist. Darüber hinaus wurden Hinweise gefunden, die darauf hindeuten, dass die Transkription in Embryonen von Medaka in zwei Schritten einsetzt. Der erste Zeitpunkt ist das 16-Zellen-Stadium, in dem die ersten Zellen identifiziert wurden, die Phosphorylierung für RNAPII zeigten, und der zweite das64-Zellen Stadium, in dem der Anteil an p-RNAPII positiven Zellen signifikant anstieg. Ein schrittweiser Anstieg der Transkription wurde bereits in anderen Spezies beobachtet, auch wenn in diesen Fällen nur eine Erhöhung der mRNA-Menge festgestellt wurde, und nicht die unterschiedliche Anzahl an transkriptionell aktiven Zellen untersucht wurde.Zusammenfassend bestätigen und erweitern die hier gezeigten Daten die grundliegenden Kenntnisse über die Prozesse vor und währen der MBT, liefern darüber hinaus aber auch Anzeichen für viele Prozesse vor und während der MBT, die nur wenig oder gar nicht verstanden sind. N2 - The study of animal development is one of the oldest disciplines in the field of biology and the collected data from countless investigations on numerous species have formed a general understanding of the animal life-cycle. Almost one century ago, one consequence of these intense investigations was the discovery of specific morphological changes that occur during the cleavage phase, a period that follows fertilization and egg activation at the very beginning of animal embryogenesis. These observations resulted into the formulation of the concept of a midblastula transition (MBT). So far, the mechanism of the nucleo-cytoplasmic ratio model is the only one that explains MBT regulation in a satisfying way. It suggests that the MBT is controlled by several maternal repressive factors in the egg, which are titrated out by every cell division until they lose their repressing potential. Although this regulatory mechanism was proven for several species and in different approaches, it is still only a rudimentary model for MBT control and leaves numerous questions unanswered. On this conceptual background, this thesis has shown that embryos from the medaka fish (Oryzias latipes) lose their cell cycle synchrony already after the fourth or fifth round of cell divisions, and replace it by a metasynchronous divisions pattern, in which cell division occurs in clear waves beginning in the embryo's center. The reason for this change in division mode is still unknown, although several hypotheses were put forward, most notable a difference in yolk-access between cells. However, this theory was weakened by division waves that progressed from one embryonic pole to the opposing one, which were occasionally observed in deformed embryos, leaving the mechanism for this phenomenon furthermore unclear. Those deformed embryos were most likely the result of asymmetric cell divisions at very early stages, a phenomenon which occurred in a significant percentage of medaka embryos and which directly influenced the equal distribution of cytoplasmic material. It could not beuncovered what kind of effects this unequal distribution of cytoplasm exerted on the progression of embryonic development, but it can be argued that relevant differences in cell volumes could result in cell clusters that will enter MBT at different time points. Comparable observations were already made in other species and it was hypothesized that they were the direct results of early unequal cell cleavages. Finally, it was demonstrated that zygotic transcription in medaka embryos is activated prior to the hitherto assumed time of the first transcriptional initiation. Moreover, indications were found that strongly speak for a transcriptional activation that occurs in two steps; a first step at the 16-cell stage when first cells were identified positive for RNAPII phosphorylation, and a second step at the 64-cell stage, when the number of p-RNAPII positive cells significantly increased. A stepwise activation of zygotic transcription was already observed in other species, but only for the overall increasing amount of mRNAs and irrespective of the actual number of transcriptionally active cells within the embryos. .. Overall, these data confirm and expand the basic knowledge of pre-MBT embryos and about the MBT itself. Furthermore, they also suggest that many early processes in pre-MBT embryos are only rudimentarily understood or still totally unknown. KW - Japankärpfling KW - Genregulation KW - Transkription KW - Furchungsteilung KW - Zellvolumen KW - Zygote KW - Midblastula-transition MBT MZT KW - Midblastula-transition MBT MZT Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-66911 ER - TY - JOUR A1 - Baptistella Florence, Michelle Etienne A1 - Massuda, Juliana Yumi A1 - Bröcker, Eva-Bettina A1 - Metze, Konradin A1 - Cintra, Maria Leticia A1 - de Souza, Elemir Macedo T1 - Angiogenesis in the progression of cutaneous squamous cell carcinoma: an immunohistochemical study of endothelial markers JF - CLINICS N2 - OBJECTIVE: To demonstrate the role of angiogenesis in the progression of cutaneous squamous cell carcinoma. INTRODUCTION: Angiogenesis is a pivotal phenomenon in carcinogenesis. Its time course in cutaneous squamous cell carcinoma has not yet been fully established. METHODS: We studied the vascular bed in 29 solar keratoses, 30 superficially invasive squamous cell carcinomas and 30 invasive squamous cell carcinomas. The Chalkley method was used to quantify the microvascular area by comparing panendothelial (CD34) with neoangiogenesis (CD105) immunohistochemical markers. The vascular bed from non-neoplastic adjacent skin was evaluated in 8 solar keratoses, 10 superficially invasive squamous cell carcinomas and 10 invasive squamous cell carcinomas. RESULTS: The microvascular area in CD105-stained specimens significantly increased in parallel with cutaneous squamous cell carcinoma progression. However, no differences between groups were found in CD34 sections. Solar keratosis, superficially invasive squamous cell carcinoma and invasive squamous cell carcinoma samples showed significant increases in microvascular area for both CD34- and CD105-stained specimens compared with the respective adjacent skin. DISCUSSION: The angiogenic switch occurs early in the development of cutaneous squamous cell carcinoma, and the rate of neovascularization is parallel to tumor progression. In contrast to panendothelial markers, CD105 use allows a dynamic evaluation of tumor angiogenesis. CONCLUSION: This study demonstrated the dependence of skin carcinogenesis on angiogenesis. KW - Pathologic neovascularization KW - CD105 antigen KW - human KW - CD34 antigen KW - skin neoplasms KW - keratosis Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-133650 VL - 66 IS - 3 ER - TY - JOUR A1 - Stieb, Sara Mae A1 - Kelber, Christina A1 - Wehner, Rüdiger A1 - Rössler, Wolfgang T1 - Antennal-Lobe Organization in Desert Ants of the Genus Cataglyphis JF - Brain, Behavior and Evolution N2 - Desert ants of the genus Cataglyphis possess remarkable visual navigation capabilities. Although Cataglyphis species lack a trail pheromone system, Cataglyphis fortis employs olfactory cues for detecting nest and food sites. To investigate potential adaptations in primary olfactory centers of the brain of C. fortis, we analyzed olfactory glomeruli (odor processing units) in their antennal lobes and compared them to glomeruli in different Cataglyphis species. Using confocal imaging and 3D reconstruction, we analyzed the number, size and spatial arrangement of olfactory glomeruli in C. fortis, C.albicans, C.bicolor, C.rubra, and C.noda. Workers of all Cataglyphis species have smaller numbers of glomeruli (198–249) compared to those previously found in olfactory-guided ants. Analyses in 2 species of Formica – a genus closely related to Cataglyphis – revealed substantially higher numbers of olfactory glomeruli (c. 370), which is likely to reflect the importance of olfaction in these wood ant species. Comparisons between Cataglyphis species revealed 2 special features in C. fortis. First, with c. 198 C. fortis has the lowest number of glomeruli compared to all other species. Second, a conspicuously enlarged glomerulus is located close to the antennal nerve entrance. Males of C. fortis possess a significantly smaller number of glomeruli (c. 150) compared to female workers and queens. A prominent male-specific macroglomerulus likely to be involved in sex pheromone communication occupies a position different from that of the enlarged glomerulus in females. The behavioral significance of the enlarged glomerulus in female workers remains elusive. The fact that C. fortis inhabits microhabitats (salt pans) that are avoided by all other Cataglyphis species suggests that extreme ecological conditions may not only have resulted in adaptations of visual capabilities, but also in specializations of the olfactory system. KW - olfactory glomeruli KW - plasticity KW - ant KW - antennal lobe KW - glomerulus KW - insects KW - interspecific comparison KW - macroglomerulus KW - olfaction Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-196815 SN - 0006-8977 SN - 1421-9743 N1 - This publication is with permission of the rights owner freely accessible due to an Alliance licence and a national licence (funded by the DFG, German Research Foundation) respectively. VL - 77 IS - 3 ER - TY - JOUR A1 - Rantamäki, Tomi A1 - Vesa, Liisa A1 - Antila, Hanna A1 - Di Lieto, Antonio A1 - Tammela, Päivi A1 - Schmitt, Angelika A1 - Lesch, Klaus-Peter A1 - Rios, Maribel A1 - Castrén, Eero T1 - Antidepressant Drugs Transactivate TrkB Neurotrophin Receptors in the Adult Rodent Brain Independently of BDNF and Monoamine Transporter Blockade JF - PLoS ONE N2 - Background: Antidepressant drugs (ADs) have been shown to activate BDNF (brain-derived neurotrophic factor) receptor TrkB in the rodent brain but the mechanism underlying this phenomenon remains unclear. ADs act as monoamine reuptake inhibitors and after prolonged treatments regulate brain bdnf mRNA levels indicating that monoamine-BDNF signaling regulate AD-induced TrkB activation in vivo. However, recent findings demonstrate that Trk receptors can be transactivated independently of their neurotrophin ligands. Methodology: In this study we examined the role of BDNF, TrkB kinase activity and monoamine reuptake in the AD-induced TrkB activation in vivo and in vitro by employing several transgenic mouse models, cultured neurons and TrkB-expressing cell lines. Principal Findings: Using a chemical-genetic TrkB(F616A) mutant and TrkB overexpressing mice, we demonstrate that ADs specifically activate both the maturely and immaturely glycosylated forms of TrkB receptors in the brain in a TrkB kinase dependent manner. However, the tricyclic AD imipramine readily induced the phosphorylation of TrkB receptors in conditional bdnf(-/-) knock-out mice (132.4+/-8.5% of control; P = 0.01), indicating that BDNF is not required for the TrkB activation. Moreover, using serotonin transporter (SERT) deficient mice and chemical lesions of monoaminergic neurons we show that neither a functional SERT nor monoamines are required for the TrkB phosphorylation response induced by the serotonin selective reuptake inhibitors fluoxetine or citalopram, or norepinephrine selective reuptake inhibitor reboxetine. However, neither ADs nor monoamine transmitters activated TrkB in cultured neurons or cell lines expressing TrkB receptors, arguing that ADs do not directly bind to TrkB. Conclusions: The present findings suggest that ADs transactivate brain TrkB receptors independently of BDNF and monoamine reuptake blockade and emphasize the need of an intact tissue context for the ability of ADs to induce TrkB activity in brain. KW - Serotonin transporter KW - Neuronal plasticity KW - Mood disorders KW - Messenger-RNA KW - Mouse-brain KW - Rat-brain KW - Activation KW - Depression KW - Mice KW - Insensitivity Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-133746 VL - 6 IS - 6 ER - TY - THES A1 - Tabares, Paula T1 - Antimicrobial, anti-protease and immunomodulatory activities of secondary metabolites from Caribbean sponges and their associated bacteria T1 - Sekundärmetabolite mit antimikrobiellen, Protease-hemmenden und immunmodulatorischen Aktivitäten aus karibischen Schwämmen und assoziierten Bakterien N2 - Marine sponges and their associated bacteria have been proven to be a rich source of novel secondary metabolites with therapeutic usefulness in infection and autoimmunity. This Ph.D. project aimed to isolate bioactive secondary metabolites from the marine sponges Amphimedon compressa, Aiolochroia crassa and Theonella swinhoei as well as from bacteria associated with different Caribbean sponges, specifically actinomycetes and sphingomonads. In this study, amphitoxin was isolated from the crude methanol extract of the sponge A. compressa and it was found to have antibacterial and anti-parasitic activities. Amphitoxin showed protease inhibitory activity when tested against the mammalian protease cathepsin B and the parasitic proteases rhodesain and falcipain-2. Furthermore, miraziridine A was identified in the dichloromethane extract of the sponge T. swinhoei collected offshore Israel in the Red Sea. Miraziridine A, a natural peptide isolated previously from the marine sponge Theonella aff. mirabilis, is a potent cathepsin B inhibitor with an IC50 value of 1.4 g/mL (2.1 M). Secondary metabolites from sponge-derived bacteria were also isolated and identified. A total of 79 strains belonging to 20 genera of the order Actinomycetales and seven strains belonging to two genera of the order Sphingomonadales were cultivated from 18 different Caribbean sponges and identified by 16S rRNA gene sequencing. Seven of these strains are likely to represent novel species. Crude extracts from selected strains were found to exhibit protease inhibition against cathepsins B and L, rhodesain, and falcipain-2 as well as immunomodulatory activities such as induction of cytokine release by human peripheral blood mononuclear cells. The isolates Sphingobium sp. CO105 and Lapillicoccus sp. BA53 were selected for cultivation, extraction and purification of bioactive metabolites based on initial bioactive screening results. The isoalloxazine isolumichrome was isolated from the strain Sphingobium sp. CO105 which inhibited the protease rhodesain with an IC50 of 0.2 M. The strain Lapillicoccus sp. BA53 was found to produce p-aminosalicylic acid methyl ester, which showed activity against the proteases cathepsins B and L, falcipain-2 and rhodesain. These results highlight the significance of marine sponge-associated bacteria to produce bioactive secondary metabolites with therapeutic potential in the treatment of infectious diseases and disorders of the immune system. N2 - Marine Schwämme und damit assoziierte Bakterien stellen eine wertvolle Quelle für neuartige Sekundärmetabolite mit therapeutischer Bedeutung für Infektion und Autoimmunität dar. Ziel dieser Doktorarbeit war die Isolierung bioaktiver Sekundärmetabolite aus den marinen Schwämmen Amphimedon compressa, Ailochroia crassa und Theonella swinhoei sowie von Bakterien, die mit verschiedenen karibischen Schwämmen assoziiert sind, wie z. B. Actinomyceten und Sphingomonaden. Amphotoxin wurde in dieser Studie aus dem methanolhaltigen Rohextrakt des Schwammes A. compressa isoliert. Es konnte sowohl eine antibakterielle als auch antiparasitäre Aktivität nachgewiesen werden. Der Einfluss von Amphotoxin auf die humane Protease Cathepsin B und die parasitären Proteasen Rhodesain und Falcipain-2 wurde ebenfalls getestet und es zeigte sich eine inhibitorische Wirkung gegenüber diesen Proteasen. Darüber hinaus wurde aus dem Dichlormethanextrakt des Schwammes T. swinhoei, der aus dem Roten Meer in Israel gewonnen wurde, Miraziridin A isoliert. Dieses natürliche Peptid war bereits aus dem marinen Schwamm Theonella aff. mirabilis isoliert worden. Miraziridin A ist ein starker Cathepsin B Inhibitor, der IC50 Wert beträgt 1.4 mg/mL (2.1 M). Sekundärmetabolite von aus Schwämmen gewonnenen Bakterien wurden ebenfalls isoliert und identifiziert. Es konnten 79 Stämme, die zu 20 verschiedenen Gattungen der Ordnung Actinomycetales, sowie sieben Stämme, die zu zwei Gattungen der Ordnung Sphingomonadales gehören, isoliert werden. Diese Bakterienstämme wurden aus ingesamt 18 verschiedenen karibischen Schwämmen kultiviert und mit Hilfe der 16S rRNA Sequenzierung bestimmt. Sieben dieser Stämme stellen wahrscheinlich neue Arten dar. Rohextrakte ausgewählter Stämme zeigten eine Proteasehemmung gegen die Cathepsine B und L, Rhodesain, Falcipain-2 sowie immunmodulatorische Wirkungen wie z.B. die Induktion der Cytokinfreisetzung durch menschliche periphere mononukleäre Blutzellen. Die Isolate Sphingobium sp. CO105 und Lapillicoccus sp. BA53 wurden für die Kultivierung, Extraktion und Aufreinigung von bioaktiven Metaboliten aufgrund der ersten vielversprechenden bioaktiven Testergebnisse ausgewählt. Das Isoalloxazin Isolumichrom wurde aus dem Stamm Sphingobium sp. CO105 isoliert, welches die Protease Rhodesain mit einem IC50-Wert von 0.2 M inhibiert. Für den Stamm Lapillicoccus sp. BA53 konnte nachgewiesen werden, dass er p-Aminosalicylsäuremethylester produziert, der eine Aktivität gegen die Proteasen Cathepsin B und L, Falcipain-2 und Rhodesain zeigt. Diese Ergebnisse unterstreichen die Bedeutung mariner, Schwamm-assoziierter Bakterien, die bioaktive sekundäre Metabolite mit therapeutischem Potential für die Behandlung von Infektionskrankheiten und Funktionsstörungen des Immunsystems produzieren. KW - Schwämme KW - Bakterien KW - Karibisches Meer KW - Sekundärmetabolit KW - Actinomycetes KW - sphingomonads KW - marine sponge KW - anti-protease KW - immunomodulatory KW - phylogenetic analysis Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-67000 ER - TY - THES A1 - Gerdau, Ole T1 - Applicability of Intrinsic Value Models at the Segmented Chinese Stock Market T1 - Anwendbarkeit intrinsischer Wertmodelle am segmentierten chinesischen Kapitalmarkt N2 - Ziel dieser Arbeit ist es, die Anwendbarkeit intrinsischer Wertmodelle in dem nach inländischen und ausländischen Investoren segmentierten chinesischen Kapitalmarkt zu untersuchen. Innerhalb des Frameworks der internationalen Portfolio Investment Theorie werden segmentspezifische Preisunterschiede nicht irrationalem Verhalten zugeschrieben, sondern als in Übereinstimmung mit ökonomischer Theorie angesehen. Der theoretische Vergleich von Gleichgewichts- und intrinsischen Wertmodellen lässt letztere für das chinesische Marktumfeld geeigneter erscheinen. Vor diesem Hintergrund wird in dieser Arbeit die Relevanz intrinsischer Wertmodelle für chinesische Aktienpreise empirisch untersucht. Demnach sind Preisunterschiede auf ungleiche Investitionsmöglichkeiten und segmentspezifische Charakteristika zurückzuführen. Dennoch führen die Ergebnisse im Hinblick auf den inländischen und Hongkong-chinesischen risikolosen Zinsproxys zu dem Schluss, dass intrinsische Wertmodelle gegenüber linearen Faktormodellen nicht als geeigneter angesehen werden können. N2 - This thesis examines the application of intrinsic value models considering segmentation between foreign and domestic investors’ stock segments in China. Within the framework of international portfolio investment theory, segment-specific price differences are theorized to be not caused by irrational behavior but consistent with economic theory. Theoretical comparison of equilibrium and intrinsic value models suggests the latter to be more suitable regarding the Chinese market environment. Correspondingly, in this thesis the relevance of intrinsic value models for Chinese stock prices is examined empirically. It is concluded that price differences can be ascribed to unequal investment opportunities and segment specific characteristics. Nevertheless, results from the domestic and Hong Kong risk-free rate proxy lead to the conclusion that intrinsic value models cannot be considered better suited than linear factor models. KW - China KW - Aktienmarkt KW - Preisbildung KW - Unternehmensbewertung KW - Marktsegmentierung KW - implizite Kapitalkosten KW - intrinsic value models KW - Chinese stock market KW - market segmentation KW - implied cost of capital Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-55652 ER - TY - THES A1 - Simon, Dennis T1 - Aspects in the fate of primordial vacuum bubbles N2 - At the present day the idea of cosmological inflation constitutes an important extension of Big Bang theory. Since its appearance in the early 1980’s many physical mechanisms have been worked out that put the inflationary expansion of space that proceeds the Hot Big Bang on a sound theoretical basis. Among the achievements of the theory of inflation are the explanaition of the almost Euclidean geometry of ‘visible’space, the homogeneity of the cosmic background radiation but, in particular, also the tiny inhomogeneity of a relative amplitude of 10−5. In many models of inflation the inflationary phase ends only locally. Hence, there exists the possibility that the inflationary process still goes on in regions beyond our visual horizon. This property is commonly termed ‘eternal inflation’. In the framework of a cosmological scalar fields, eternal inflation can manifest itself in a variety of ways. On the one hand fluctuations of the field, if sufficiently large, can work against the classical trajectory and therefore counteract the end of inflation. In regions where this is the case the accelerated expansion of space continues at a higher rate. In parts of this region the process may replicate itself again and in this way may continue throughout all of time. Space and field are said to reproduce themselves. On the other hand, a mechanism that can occur in addition or independent of the latter, is so called vacuum tunneling. If the potential of the scalar field has several local minima, a semi-classical calculation suggests that within a spherical region, a bubble, the field can tunnel to another state. The respective tunneling rates depend on the potential difference and the shape of the potential between the states. Generally, the tunneling rate is exponentially suppressed, which means that the inflation lasts for a long time before tunneling takes place. The ongoing inflationary process effectively reduces local curvature, anistotropy and inhomogeneity, so that this property is known as the ‘cosmic no-hair conjecture’. For this reason cosmological considerations of the evolution of bubbles thus far almost entirely involved vacuum (de Sitter) backgrounds. However, new insights in the framework of string theory suggest high tunneling rates which allow for the possibility of bubble nucleation in non-vacuum dominated backgrounds. In this case the evolution of the bubble depends on the properties of the background spacetime. A deeper introduction in chapter 4 is followed by the presentation of the Lemaître-Tolman spacetime in chapter 5 which constitutes the background spacetime in the study of the effect of matter and inhomogeneity on the evolution of vacuum bubbles. In chapter 6 we explicitly describe the application of the ‘thin-shell’ formalism and the resulting system of equations. This is succeeded in chapter 7 by the detailed analysis of bubble evolution in various limits of the Lemaître-Tolman spacetime and a Robertson-Walker spacetime with a rapid phase transition. The central observations are that the presence of dust, at a fixed surface energy density, goes along with a smaller nucleation volume and possibly leads to a a collapse of the bubble. In an expanding background, the radially inhomogeneous dust profile is efficiently diluted so that there is essentially no effect on the evolution of the domain wall. This changes in a radially inhomogeneous curvature profile, positive curvature decelerates the expansion of the bubble. Moreover, we point out that the adopted approach does not allow for a treatment of a, physically expected, matter transfer so that the results are to be understood as preliminary under this caveat. In the second part of this thesis we consider potential observable consequences of bubble collisions in the cosmic microwave background radiation. The topological nature of the signal suggests the use of statistics that are well suited to quantify the morphological properties of the temperature fluctuations. In chapter 10 we present Minkowski Functionals (MFs) that exactly provide such statistics. The presented error analysis allows for a higher precision of numerical MFs in comparison to earlier methods. In chapter 12 we present the application of our algorithm to a Gaussian and a collision map. We motivate the expected MFs and extract their numerical counterparts. We find that our least-squares fitting procedure accurately reproduces an underlying signal only when a large number of realizations of maps are averaged over, while for a single WMAP and PLANCK resolution map, only when a highly prominent disk, with |δT| = 2√σG and ϑd = 40◦, we are able to recover the result. This is unfortunate, as it means that MF are intrinsically too noisy to be able to distinguish cold and hot spots in the CMB for small sizes. N2 - Die Idee der kosmologischen Inflation stellt heute die wichtigste Erweiterung der klassischen Urknalltheorie dar. Seit ihrem Aufkommen in den frühen 80er Jahren sind zahlreiche physikalische Mechanismen bekannt und ausgearbeitet geworden, die die inflationäre Expansion des Raums vor der dem ‘heißen’ Urknall auf eine tragfähige, theoretische Basis stellen. Zu den Errungenschaften der Inflationstheorie zählen unter Anderem die Erklärung der nahezu Euklidischen Geometrie des sichtbaren Raums, die bemerkenswerte Homogenität der kosmischen Hintergrundstrahlung, im Besonderen aber auch die ihr innewohnenden winzigen Unregelmäßigkeiten mit einer relativen Amplitude der Größenordnung 10−5. In vielen Inflationsmodellen endet die Inflation allerdings nur lokal. Demzufolge besteht die Möglichkeit, dass es außerhalb des von uns sichtbaren Raums Gebiete geben kann, in denen der inflationäre Prozess weiterhin stattfindet. Dieser Eigenschaft wird durch den Begriff ‘Ewige Inflation’ Rechnung getragen. Ewige Inflation kann sich im Rahmen der Skalarfeld-Inflation in verschiedenen Formen manifestieren. Zum Einen können die Fluktuationen des Feldes so groß sein, dass sie der klassischen Trajektorie, und damit dem Ende der Inflation, entgegenwirken wirken. In Regionen, in denen das geschieht, setzt sich die beschleunigte Expansion des Raums mit einer höheren Rate weiter fort. In Teilen solcher Regionen mag sich dies wiederholen und der Vorgang auf diese Weise theoretisch bis ins Unendliche andauern. Raum und Feld reproduzieren sich selbst. Eine weitere Möglichkeit, die sowohl unabhängig als auch zusätzlich zur zuvor beschriebenen auftreten kann, ist die des sogenannten Vakuumtunnelns. Wenn das Potential des Skalarfelds mehrere lokale Minima aufweist, so legt eine semi-klassische Rechnung, dass das Feld innerhalb eines sphärischen Gebiets, einer Blase, in einen anderen Zustand tunneln kann. Fortwährende Inflation beseitigt großräumig, effektiv, jegliche Form der Unregelmäßigkeit, d. h. Raumkrümmung, Anisotropie und Inhomogenität, sodass dieser Sachverhalt unter dem Ausdruck ‘cosmic no-hair conjecture’ bekannt ist. Aus diesem Grund waren bisherige Betrachtungen fast aussschließlich der Entwicklung von Blasen in einem Vakuumhintergrund gewidmet. Neue Überlegungen im Rahmen der Stringtheorie erlauben allerdings auch hohe Tunnelraten, sodass die Möglichkeit der Nukleation von Blasen in nicht-vakuumdominierten Hintergründen besteht. Die weitere Entwicklung hängt in diesem Fall von den Eigenschaften des Hintergrunds ab. Nach der Ableitung der Vakuumlösung wird sukzessive auf die Blasenentwicklung in einem statischen Hintergrund, in einem dynamischen, aber homogenen Hintergrund, in einem flachen, inhomogenen Hintergrund, in einem gekrümmten, inhomogenen Hintergrund und in einem homogenen Hintergrund mit Phasenübergang eingegangen. Zu den zentralen Beobachtungen gehört, dass die Präsenz des Staubs, bei fixierter Oberflächendichte, eine Verringerung des Nukleationsvolumens mit sich bringt und dazu führen kann, dass die Blase einen Kollaps beginnt. Das ändert sich in einem radial inhomogenen Krümmungsprofil, positive Raumkrümmung hat einen abbremsenden Effekt auf die Expansion der Blase. Es wird herausgestellt, dass der verwendete Ansatz keine Möglichkeit zur Behandlung eines, physikalisch zu erwartenden, Materietransfers bietet und die damit erzielten Ergebnisse unter diesem Vorbehalt zu verstehen sind. Im zweiten Teil der vorliegenden Arbeit wird potentiell beobachtbaren Konsequenzen der Kollision zweier Blasen in der kosmischen Hintergrundstrahlung nachgegangen. Die topologische Natur des Signals in der letzten Streufläche legt die Verwendung von Statistiken nahe, die es erlauben, die morphologischen Eigenschaften der Temperaturfluktuationen zu quantifizieren. Diese Statistiken bieten die Minkowski Funktionale (MF), die in Kapitel 10 vorgestellt werden. Dieses wird benutzt um Karten eines Gaussschen Zufallsfeldes zu erzeugen und die entsprechenden MF zu berechnen. Die vorgestellte Fehleranalyse erlaubt eine höhere Präzision der numerischen MF im Vergleich zu bisherigen Methoden. Ein Fit der geringsten quadratischen Abweichung reproduziert die tatsächlichen Parameter nur dann, wenn über eine hohe Anzahl von Realisierungen gemittelt wird, wohingegen die Betrachtung einer einzigen Karte in WMAP bzw. Planck Auflösung nur für “auffällige” Scheiben mit Temperaturunterschied δT = 2√σG und Öffnungswinkel ϑd = 40◦ Übereinstimmung erreicht wird. Dies bedeutet, das MF ein schlechtes ‘Signal zu Rausch’Verhältnis besitzen um heiße oder kalte Scheiben in der kosmischen Hintergrundstrahlung zu erfassen. KW - Kosmologie KW - Kosmische Hintergrundstrahlung KW - Inflationäres Weltall KW - Bubble Universes KW - Israel Junction Conditions KW - Inhomogeneous Cosmological Models KW - Minkowski Functionals KW - HEALPix Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-67019 ER - TY - INPR A1 - Nassourou, Mohamadou T1 - Assisting Analysis and Understanding of Quran Search Results with Interactive Scatter Plots and Tables N2 - The Quran is the holy book of Islam consisting of 6236 verses divided into 114 chapters called suras. Many verses are similar and even identical. Searching for similar texts (e.g verses) could return thousands of verses, that when displayed completely or partly as textual list would make analysis and understanding difficult and confusing. Moreover it would be visually impossible to instantly figure out the overall distribution of the retrieved verses in the Quran. As consequence reading and analyzing the verses would be tedious and unintuitive. In this study a combination of interactive scatter plots and tables has been developed to assist analysis and understanding of the search result. Retrieved verses are clustered by chapters, and a weight is assigned to each cluster according to number of verses it contains, so that users could visually identify most relevant areas, and figure out the places of revelation of the verses. Users visualize the complete result and can select a region of the plot to zoom in, click on a marker to display a table containing verses with English translation side by side. KW - Text Mining KW - Visualisierung KW - Koran KW - Information Visualization KW - Visual Text Mining KW - Scatter Plot KW - Quran Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-55840 ER - TY - INPR A1 - Nassourou, Mohamadou T1 - Assisting Understanding, Retention, and Dissemination of Religious Texts Knowledge with Modeling, and Visualization Techniques: The Case of The Quran N2 - Learning a book in general involves reading it, underlining important words, adding comments, summarizing some passages, and marking up some text or concepts. Once deeper understanding is achieved, one would like to organize and manage her/his knowledge in such a way that, it could be easily remembered and efficiently transmitted to others. In this paper, books organized in terms of chapters consisting of verses, are considered as the source of knowledge to be modeled. The knowledge model consists of verses with their metadata and semantic annotations. The metadata represent the multiple perspectives of knowledge modeling. Verses with their metadata and annotations form a meta-model, which will be published on a web Mashup. The meta-model with linking between its elements constitute a knowledge base. An XML-based annotation system breaking down the learning process into specific tasks, helps constructing the desired meta-model. The system is made up of user interfaces for creating metadata, annotating chapters’ contents according to user selected semantics, and templates for publishing the generated knowledge on the Internet. The proposed software system improves comprehension and retention of knowledge contained in religious texts through modeling and visualization. The system has been applied to the Quran, and the result obtained shows that multiple perspectives of information modeling can be successfully applied to religious texts. It is expected that this short ongoing study would motivate others to engage in devising and offering software systems for cross-religions learning. KW - Wissensmanagement KW - Koran KW - Knowledge Modeling KW - Meta-model KW - Knowledge Management KW - Content Management KW - Quran Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-55927 ER - TY - JOUR A1 - Carsten A., Böger A1 - Gorski, Mathias A1 - Li, Man A1 - Hoffmann, Michael M. A1 - Huang, Chunmei A1 - Yang, Qiong A1 - Teumer, Alexander A1 - Krane, Vera A1 - O'Seaghdha, Conall M. A1 - Kutalik, Zoltán A1 - Wichmann, H.-Erich A1 - Haak, Thomas A1 - Boes, Eva A1 - Coassin, Stefan A1 - Coresh, Josef A1 - Kollerits, Barbara A1 - Haun, Margot A1 - Paulweber, Bernhard A1 - Köttgen, Anna A1 - Li, Guo A1 - Shlipak, Michael G. A1 - Powe, Neil A1 - Hwang, Shih-Jen A1 - Dehghan, Abbas A1 - Rivadeneira, Fernando A1 - Uitterlinden, André A1 - Hofman, Albert A1 - Beckmann, Jacques S. A1 - Krämer, Bernhard K. A1 - Witteman, Jacqueline A1 - Bochud, Murielle A1 - Siscovick, David A1 - Rettig, Rainer A1 - Kronenberg, Florian A1 - Wanner, Christoph A1 - Thadhani, Ravi I. A1 - Heid, Iris M. A1 - Fox, Caroline S. A1 - Kao, W.H. T1 - Association of eGFR-Related Loci Identified by GWAS with Incident CKD and ESRD JF - PLoS Genetics N2 - Family studies suggest a genetic component to the etiology of chronic kidney disease (CKD) and end stage renal disease (ESRD). Previously, we identified 16 loci for eGFR in genome-wide association studies, but the associations of these single nucleotide polymorphisms (SNPs) for incident CKD or ESRD are unknown. We thus investigated the association of these loci with incident CKD in 26,308 individuals of European ancestry free of CKD at baseline drawn from eight population-based cohorts followed for a median of 7.2 years (including 2,122 incident CKD cases defined as eGFR < 60ml/min/1.73m(2) at follow-up) and with ESRD in four case-control studies in subjects of European ancestry (3,775 cases, 4,577 controls). SNPs at 11 of the 16 loci (UMOD, PRKAG2, ANXA9, DAB2, SHROOM3, DACH1, STC1, SLC34A1, ALMS1/NAT8, UBE2Q2, and GCKR) were associated with incident CKD; p-values ranged from p = 4.1e-9 in UMOD to p = 0.03 in GCKR. After adjusting for baseline eGFR, six of these loci remained significantly associated with incident CKD (UMOD, PRKAG2, ANXA9, DAB2, DACH1, and STC1). SNPs in UMOD (OR = 0.92, p = 0.04) and GCKR (OR = 0.93, p = 0.03) were nominally associated with ESRD. In summary, the majority of eGFR-related loci are either associated or show a strong trend towards association with incident CKD, but have modest associations with ESRD in individuals of European descent. Additional work is required to characterize the association of genetic determinants of CKD and ESRD at different stages of disease progression. KW - Chronic Kidney-disease KW - Stage renal-disease KW - Glomerular-filtration-rate KW - Diabetic-nephropathy KW - General-population KW - African-americans KW - Risk KW - Progression KW - Mortality KW - Variants Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-133758 VL - 7 IS - 9 ER - TY - JOUR A1 - Reinards, THCM A1 - Albers, HM A1 - Brinkman, DMC A1 - Kamphuis, SSM A1 - van Rossum, MAJ A1 - Hoppenreijs, EPAH A1 - Girschick, HJ A1 - Wouters, C A1 - Saurenmann, RK A1 - Houwing-Duistermaat, JJ A1 - Toes, REM A1 - Huizinga, TWJ A1 - ten Cate, R A1 - Schilham, MW T1 - Association of the CCR5Δ32 variant with juvenile idiopathic arthritis in a meta-analysis JF - Pediatric Rheumatology N2 - No abstract available. KW - Pädiatrie KW - Rheumatologie Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-133763 VL - 9 IS - Suppl. 1 ER - TY - JOUR A1 - Reinards, THCM A1 - Albers, HM A1 - Brinkman, DMC A1 - Kamphuis, SSM A1 - van Rossum, MAJ A1 - Hoppenreijs, EPAH A1 - Girschick, HJ A1 - Wouters, C A1 - Saurenmann, RK A1 - Houwing-Duistermaat, JJ A1 - Toes, REM A1 - Huizinga, TWJ A1 - ten Cate, R A1 - Schilham, MW T1 - Association of the CD226 (DNAM-1) Gly307Ser polymorphism with juvenile idiopathic arthritis JF - Pediatric Rheumatology N2 - No abstract available. KW - Pädiatrie KW - Rheumatologie Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-133773 VL - 9 IS - Suppl. 1 ER - TY - JOUR A1 - Schmitt, Jana A1 - Keller, Andreas A1 - Nourkami-Tutdibi, Nasenien A1 - Heisel, Sabrina A1 - Habel, Nunja A1 - Leidinger, Petra A1 - Ludwig, Nicole A1 - Gessler, Manfred A1 - Graf, Norbert A1 - Berthold, Frank A1 - Lenhof, Hans-Peter A1 - Meese, Eckart T1 - Autoantibody Signature Differentiates Wilms Tumor Patients from Neuroblastoma Patients JF - PLoS ONE N2 - Several studies report autoantibody signatures in cancer. The majority of these studies analyzed adult tumors and compared the seroreactivity pattern of tumor patients with the pattern in healthy controls. Here, we compared the autoimmune response in patients with neuroblastoma and patients with Wilms tumor representing two different childhood tumors. We were able to differentiate untreated neuroblastoma patients from untreated Wilms tumor patients with an accuracy of 86.8%, a sensitivity of 87.0% and a specificity of 86.7%. The separation of treated neuroblastoma patients from treated Wilms tumor patients' yielded comparable results with an accuracy of 83.8%. We furthermore identified the antigens that contribute most to the differentiation between both tumor types. The analysis of these antigens revealed that neuroblastoma was considerably more immunogenic than Wilms tumor. The reported antigens have not been found to be relevant for comparative analyses between other tumors and controls. In summary, neuroblastoma appears as a highly immunogenic tumor as demonstrated by the extended number of antigens that separate this tumor from Wilms tumor. KW - Heparan-sulfate KW - N-Myc KW - Serum autoantibodies KW - Suppressors EXT1 KW - Neuro-blastoma KW - Allelic loss KW - Lung-cancer KW - Children KW - Amplification KW - Therapy Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-133794 VL - 6 IS - 12 ER - TY - JOUR A1 - Camacho, J.P.M. A1 - Schmid, M. A1 - Cabrero, J. T1 - B Chromosomes and Sex in Animals JF - Sexual Development N2 - Supernumerary (B) chromosomes are dispensable elements found in many eukaryote genomes in addition to standard (A) chromosomes. In many respects, B chromosomes resemble sex chromosomes, so that a common ancestry for them has frequently been suggested. For instance, B chromosomes in grasshoppers, and other insects, show a pycnotic cycle of condensation-decondensation during meiosis remarkably similar to that of the X chromosome. In some cases, B chromosome size is even very similar to that of the X chromosome. These resemblances have led to suggest the X as the B ancestor in many cases. In addition, sex chromosome origin from B chromosomes has also been suggested. In this article, we review the existing evidence for both evolutionary pathways, as well as sex differences for B frequency at adult and embryo progeny levels, B chromosome effects or B chromosome transmission. In addition, we review cases found in the literature showing sex-ratio distortion associated with B chromosome presence, the most extreme case being the paternal sex ratio (PSR) chromosomes in some Hymenoptera. We finally analyse the possibility of B chromosome regularisation within the host genome and, as a consequence of it, whether B chromosomes can become regular members of the host genome. KW - A chromosomes KW - B chromosomes KW - sex ratio KW - X chromosome Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-196321 SN - 1661-5425 SN - 1661-5433 N1 - This publication is with permission of the rights owner freely accessible due to an Alliance licence and a national licence (funded by the DFG, German Research Foundation) respectively. VL - 5 IS - 3 ER - TY - JOUR A1 - Groß, Uwe A1 - Amuzu, Sylvarius K. A1 - de Ciman, Ring A1 - Kassimova, Iparkhan A1 - Groß, Lisa A1 - Rabsch, Wolfgang A1 - Rosenberg, Ulrike A1 - Schulze, Marco A1 - Stich, August A1 - Zimmermann, Ortrud T1 - Bacteremia and Antimicrobial Drug Resistance over Time, Ghana JF - Emerging Infectious Diseases N2 - Bacterial distribution and antimicrobial drug resistance were monitored in patients with bacterial bloodstream infections in rural hospitals in Ghana. In 2001-2002 and in 2009, Salmonella enterica serovar Typhi was the most prevalent pathogen. Although most S. enterica serovar Typhi isolates were chloramphenicol resistant, all isolates tested were susceptible to ciprofloxacin. KW - Typhoid-fever KW - Children KW - Surveillance KW - Kenya Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-133805 N1 - All material published in Emerging Infectious Diseases is in the public domain and may be used and reprinted without special permission; proper citation, however, is required. VL - 17 IS - 10 ER - TY - JOUR A1 - Hess, Michael A1 - Stritzker, Jochen A1 - Härtl, Barbara A1 - Sturm, Julia A1 - Gentschev, Ivaylo A1 - Szalay, Aladar T1 - Bacterial glucuronidase as general marker for oncolytic virotherapy or other biological therapies N2 - Background: Oncolytic viral tumor therapy is an emerging field in the fight against cancer with rising numbers of clinical trials and the first clinically approved product (Adenovirus for the treatment of Head and Neck Cancer in China) in this field. Yet, until recently no general (bio)marker or reporter gene was described that could be used to evaluate successful tumor colonization and/or transgene expression in other biological therapies. Methods: Here, a bacterial glucuronidase (GusA) encoded by biological therapeutics (e.g. oncolytic viruses) was used as reporter system. Results: Using fluorogenic probes that were specifically activated by glucuronidase we could show 1) preferential activation in tumors, 2) rena l excretion of the activated fluorescent compounds and 3) reproducible detection of GusA in the serum of oncolytic vaccinia virus treated, tumor bearing mice in several tumor models. Time course studies revealed that reliable differentiation between tumor bearing and healthy mice can be done as early as 9 days post injection of the virus. Regarding the sensitivity of the newly developed assay system, we could show that a single infected tumor cell could be reliably detected in this assay. Conclusion: GusA therefore has the potential to be used as a general marker in the preclinical and clinical evaluation of (novel) biological therapies as well as being useful for the detection of rare cells such as circulating tumor cells KW - Virologie KW - beta-glucuronidase KW - oncolytic virus KW - cancer KW - reporter KW - fluorescent probe Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-69163 ER - TY - THES A1 - Polzien, Lisa T1 - BAD Phosphorylation: A Novel Link between Apoptosis and Cancer T1 - BAD Phosphorylierung: Eine Neue Verbindung zwischen Apoptose und Krebs N2 - BAD (Bcl-2 antagonist of cell death, Bcl-2 associated death promoter) is a pro-apoptotic member of the Bcl-2 protein family that is regulated by phosphorylation in response to survival factors. Although much attention has been devoted to the identification of phosphorylation sites in murine BAD (mBAD), little data are available with respect to phosphorylation of human BAD (hBAD) protein. In this work, we investigated the quantitative contribution of BAD targeting kinases in phosphorylating serines 75, 99 and 118 of hBAD (Chapter 3.1). Our results indicate that RAF kinases phosphorylate hBAD in vivo at these established serine residues. RAF-induced phosphorylation of hBAD was not prevented by MEK inhibitors but could be reduced to control levels by use of the RAF inhibitor Sorafenib (BAY 43-9006). Consistently, expression of active RAF suppressed apoptosis induced by hBAD and the inhibition of colony formation caused by hBAD could be prevented by RAF. In addition, using surface plasmon resonance technique we analyzed the direct consequences of hBAD phosphorylation by RAF with respect to complex formation of BAD with 14-3-3 proteins and Bcl-XL. Phosphorylation of hBAD by active RAF promotes 14-3-3 protein association, whereby the phosphoserine 99 represents the major binding site. Furthermore, we demonstrate in this work that hBAD forms channels in planar bilayer membranes in vitro. This pore-forming capacity is dependent on phosphorylation status and interaction with 14-3-3 proteins. Additionally, we show that hBAD pores possess a funnel-shaped geometry that can be entered by ions and non-charged molecules up to 200 Da (Chapter 3.2). Since both lipid binding domains of hBAD (LBD1 and LBD2) are located within the C-terminal region, we investigated this part of the protein with respect to its structural properties (Chapter 3.3). Our results demonstrate that the C-terminus of hBAD possesses an ordered β-sheet structure in aqueous solution that adopts helical disposition upon interaction with lipid membranes. Additionally, we show that the interaction of the C-terminal segment of hBAD with the BH3 domain results in the formation of permanently open pores, whereby the phosphorylation of serine 118 proved to be necessary for effective pore-formation. In contrast, phosphorylation of serine 99 in combination with 14-3-3 association suppresses formation of channels. These results indicate that the C-terminal part of hBAD controls hBAD function by structural transitions, lipid binding and phosphorylation. Using mass spectrometry we identified in this work, besides the established in vivo phosphorylation sites at serines 75, 99 and 118, several novel hBAD phosphorylation sites (serines 25, 32/34, 97, 124 and 134, Chapter 3.1). To further analyze the regulation of hBAD function, we investigated the role of these newly identified phosphorylation sites on BAD-mediated apoptosis. We found that in contrast to the N-terminal phosphorylation sites, the C-terminal serines 124 and 134 act in an anti-apoptotic manner (Chapter 3.4). Our results further indicate that RAF kinases and PAK1 effectively phosphorylate BAD at serine 134. Notably, in the presence of wild type hBAD, co-expression of survival kinases, such as RAF and PAK1, leads to a strongly increased proliferation, whereas substitution of serine 134 by alanine abolishes this process. Furthermore, we identified hBAD serine 134 to be strongly involved in survival signaling in B-RAF-V600E containing tumor cells and found phosphorylation of this residue to be crucial for efficient proliferation in these cells. Collectively, our findings provide new insights into the regulation of hBAD function by phosphorylation and its role in cancer signaling. N2 - BAD (Bcl-2 antagonist of cell death, Bcl-2 associated death promoter) ist ein pro-apoptotisches Mitglied der Bcl-2 Proteinfamilie und wird in Abhängigkeit von Wachstumsfaktoren durch Phosphorylierung reguliert. Obwohl der Identifizierung von Phosphorylierungsstellen in murinem BAD (mBAD) in den vergangenen Jahren viel Aufmerksamkeit gewidmet wurde, ist die Phosphorylierung des humanen BAD (hBAD) Proteins kaum charakterisiert. In der vorliegenden Arbeit wird der quantitative Beitrag unterschiedlicher Kinasen in Bezug auf die Phosphorylierung der etablierten Phosphorylierungsstellen Serin 75, 99 und 118 von hBAD dargestellt (Kapitel 3.1). Unsere Ergebnisse deuten darauf hin, dass RAF-Kinasen hBAD in vivo an diesen etablierten Stellen phosphorylieren. Die RAF-bedingte Phosphorylierung konnte nicht durch MEK-Inhibitoren beeinflusst werden, dagegen bewirkte die Gabe des RAF-Inhibitors Sorafenib (BAY 43-9006) eine Reduktion der Phosphorylierung auf das Niveau der Kontrollproben. Übereinstimmend konnte durch die Expression von aktiven RAF-Kinasen die BAD-induzierte Apoptose sowie die BAD-bedingte Inhibierung der Koloniebildung unterdrückt werden. Zusätzlich verwendeten wir Oberflächen-Plasmon-Resonanz-Spektroskopie um die Auswirkungen der RAF-bedingten BAD-Phosphorylierung auf die Komplexbildung von hBAD mit 14-3-3-Proteinen und Bcl-XL zu analysieren. Dabei wurde festgestellt, dass die Phosphorylierung von hBAD durch aktive RAF-Kinasen die Assoziierung von 14-3-3 begünstigt, wobei Phosphoserin 99 die Hauptbindungsstelle darstellt. Weiterhin gelang der Nachweis, dass hBAD in vitro Poren in Lipid-Doppelschicht-Membranen bilden kann. Wir wiesen nach, dass die Fähigkeit von hBAD Poren zu bilden phosphorylierungsabhängig ist und durch die Interaktion mit 14-3-3-Proteinen beeinflusst wird. Außerdem demonstrieren wir in dieser Arbeit, dass die BAD-Poren eine zylinderförmige Geometrie aufweisen und sowohl für Ionen als auch für ungeladene Moleküle mit einer Größe von bis zu 200 Da zugänglich sind (Kapitel 3.2). Da beide Lipid-Bindungsstellen (LBD1 und LBD2) am C-Terminus des hBAD lokalisiert sind, charakterisierten wir des Weiteren diesen Teil des Proteins in Hinblick auf seinen strukturellen Aufbau (Kapitel 3.3). Unsere Ergebnisse demonstrieren, dass der hBAD-C-Terminus in wässriger Lösung eine geordnete β-Faltblattstruktur aufweist und bei Eintritt in eine Lipidumgebung helikale Elemente ausbildet. Zusätzlich zeigen wir in dieser Arbeit, dass die Interaktion des C-terminalen hBAD-Segments mit der BH3-Domäne zur Ausbildung von permanent offenen Poren führt, wobei die Phosphorylierung an Serin 118 eine Notwendigkeit für effektive Porenbildung darstellt. In Gegensatz dazu bewirkte die Phosphorylierung von Serin 99 in Kombination mit der Assoziierung von 14-3-3-Protein eine Inhibierung der Porenbildung. Diese Ergebnisse weisen darauf hin, dass der C-terminale Teil von hBAD durch strukturelle Veränderungen, Lipidbindung und Phosphorylierung entscheidend die Funktion von hBAD reguliert. Mit Hilfe von Massenspektroskopie konnten wir im Rahmen dieser Arbeit, zusätzlich zu den etablierten Phosphorylierungsstellen Serin 75, 99 und 118, einige neue in vivo Phosphorylierungsstellen von hBAD identifizieren (Serin 25, 32/34, 97, 124 und 134, Kapitel 3.1). Um die Regulierung der Funktion von hBAD weiter zu analysieren, untersuchten wir die Rolle dieser neu identifizierten Phosphorylierungsstellen in Bezug auf die BAD-induzierte Apoptose (Kapitel 3.4). Wir fanden heraus, dass im Gegensatz zu den N-terminalen Phosphorylierungsstellen, die Phosphorylierungsstellen am C-Terminus an der Apoptoseregulation mitwirken. Weiterhin weisen unsere Ergebnisse darauf hin, dass RAF-Kinasen, neben PAK1, an der Phosphorylierung von Serin 134 von hBAD beteiligt sind. Interessanterweise bewirkte die Co-Expression von RAF oder PAK1 mit dem wildtypischen hBAD eine erhebliche Verstärkung der Zellproliferation. Diese verstärkte Proliferation konnte durch einen Serin-zu-Alanin-Austausch in hBAD an der Stelle 134 vollständig verhindert werden. Weiterhin entdeckten wir, dass die Phosphorylierung dieser Stelle in B-RAF-V600E enthaltenden Tumorzellen bei der Regulation der Zellproliferation mitwirkt und für eine effiziente Proliferation entscheidend ist. Zusammenfassend gewähren unsere Ergebnisse neue Einblicke in die Regulierung der Funktion von hBAD durch Phosphorylierung sowie in die Rolle von hBAD bei der Krebsentwicklung. KW - Krebs KW - Apoptosis KW - Bcl-2-Proteinfamilie KW - Raf KW - BH3-only proteins KW - BAD KW - cancer Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-56919 ER - TY - THES A1 - Stock, Patrick Maria T1 - Binding site contribution in high resolution records of nicotinic receptor channel currents T1 - Beitrag der Bindungsstellen zum Öffnungsverhalten des nAChRs N2 - The nicotinic acetylcholine receptor of skeletal muscle is one of the best-investigated synaptic proteins and often serves as model for the entire family of pentameric ligand gated ion channels (pLGICs). Receptors of this superfamily share a common architecture. After binding the agonist the characteristic C-loop structure closes around the ligand-binding site and triggers a wave of conformational changes that spread through the protein and finally result in the opening of the channel gate. As shown before, high-resolution single channel data can hardly be described by simple kinetic mechanisms (Parzefall et al., 1998, Hallermann et al., 2005). Recent advances in the field of kinetic modelling on receptor currents demonstrate that the introduction of additional short lived shut states in kinetic schemes enhances the quality of estimates of reaction rates. The additional shut states that immediately follow ligand bound states in the mechanism are suggested to resemble the closing movement of the C-loop (Lape et al., 2008; Mukhtasimova et al., 2009). It has not been described yet whether and how the structural differences of the 2 binding sites of the receptor influence the opening behaviour. To address this question, high-resolution single channel recordings, in combination with agonists that are known to exhibit different binding site selectivity, were performed. Thereby, a detailed description of the binding site dependent generation of channel currents is possible. At the embryonic mouse-muscle receptor used in this study the ligand binding sites are located at the α-γ and α-δ subunit interfaces. By allocation of opening characteristics to the α-δ and α-γ sites it is possible to show the binding site dependent activation of distinct kinetic states. Furthermore, it will be shown that the recently introduced short-lived shut states are sufficient to describe high-resolution single channel data. Finally an enhanced kinetic mechanism based on the ‘primed states’ model, published in 2009 by Mukhtasimova et al., will be presented. In this model the structurally diverse α-δ and α-γ binding sites elicit different kinetic channel characteristics. Thus the complex high-resolution kinetic characteristics of the embryonic receptor can be described coherently. N2 - Der nicotinische Acetylcholin-Rezeptorkanal des Skelettmuskels zählt zu den bestuntersuchten synaptischen Proteinen und gilt als Modell für die Familie der Liganden gesteuerten pentameren Ionenkanäle. Rezeptoren dieser Großfamilie besitzen als charakteristisches strukturelles Merkmal ein Cystein-Schleifen-Motiv (C-loop), welches sich nach Bindung eines Agonisten um die Bindungstasche herum schließt und eine Kette weiterer Konformationsänderungen nach sich zieht. Wie in früheren Publikationen festgestellt wurde, ist es nur schwer möglich hochaufgelöste Messdaten mit konservativen kinetischen Modellen ausreichend zu beschreiben (Parzefall et al., 1998; Hallermann et al., 2005). Aktuelle Fortschritte auf dem Gebiet der kinetischen Modellierung von mechanistischen Rezeptormodellen auf Rezeptorströme, zeigen, dass die Einführung zusätzlicher kurzlebiger Geschlossenzustände in den kinetischen Mechanismen die Qualität der Voraussagen der Modelle verbessert. Diese zusätzlichen Geschlossenzustände, welche Zuständen mit gebundenen Agonisten des Rezeptormodells folgen, spiegeln höchstwahrscheinlich die Schließung des Cystein-Schleifen-Motivs wider (Lape et al., 2008; Mukhtasimova et al., 2009). Trotz der jüngsten Fortschritte wurde bisher nicht beschrieben, wie und ob die strukturellen Unterschiede der 2 vorhandenen Bindungsstellen sich auf die Charakteristika des Öffnungsverhaltens auswirken. Die Bindungsstellen für Agonisten befinden sich am embryonalen nicotinischen Acetylcholinrezeptor des Muskels der Maus an den Schnittstellen der α-δ und der α-γ Untereinheiten. Um der Frage des Einflusses der Bindungsstellendiversität auf den Grund zu gehen, wurden hochaufgelöste Einzelkanalmessungen unter der Verwendung von unterschiedlichen Agonisten, für die bekannt ist, dass sie unterschiedliche Selektivitäten zu den Bindungsstellen besitzen, durchgeführt. Hierdurch ist es möglich ein detailliertes Bild der bindungsstellenbedingten Auslösung definierter Öffnungscharakteristika zu beschreiben. Durch die Zuweisung der Öffnungscharakteristika zu den α-δ und α-γ Bindungsstellen gelingt es die bindungsstellenabhängige Aktivierung von einzelnen kinetischen Zuständen zu zeigen. Darüber hinaus werden direkte Anhaltspunkte dafür gezeigt, dass es möglich ist mit den angeführten kurzlebigen Geschlossenzuständen hochaufgelöste Einzelkanaldaten kinetisch hinreichend zu beschreiben. Schließlich wird ein erweiterter kinetischer Mechanismus vorgestellt, welcher auf dem ‚primed-states’ Modell, das 2009 von Mukhtasimova veröffentlicht wurde, basiert. Zusätzlich ist dieser in der Lage die komplexen kinetischen Charakteristika des embryonalen nicotinischen Rezeptorkanals, unter hoher zeitlicher Auflösung der Messdaten, zu beschreiben. KW - Nicotinischer Acetylcholinrezeptor KW - Bindestelle KW - Ionenkanal KW - Kinetik KW - Neurobiologie KW - nAChR KW - Kanalkinetik KW - Bindungsstellen KW - Rezeptor KW - neurobiology KW - nAChR KW - receptor channel KW - binding sites KW - kinetics Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-71769 ER - TY - THES A1 - Beitzinger, Christoph T1 - Binding-, Blocking- and Translocation-Processes Concerning Anthrax-Toxin and Related Bacterial Protein-Toxins of the AB7-Family T1 - Charakterisierung von Bindungs-, Blockierungs- und Translokationsprozessen am Anthrax-Toxin und verwanten Toxinen der AB7-Gruppe N2 - Bacterial protein toxins belong to the most potent toxins which are known. They exist in many different forms and are part of our every day live. Some of them are spread by the bacteria during infections and therefore play a crucial role in pathogenicity of these strains. Others are secreted as a defense mechanism and could be uptaken with spoiled food. Concerning toxicity, some of the binary toxins of the AB7-type belong to the most potent and dangerous toxins in the world. Even very small amounts of these proteins are able to cause severe symptoms during an infection with pathogen species of the genus Clostridium or Bacillus. Apart from the thread the toxins constitute, they exhibit a unique way of intoxication. Members of the AB7-toxin family consist of a pore-forming subunit B, that acts as a molecular syringe to translocate the enzymatic moieties A into the cytosol of target cells. This complex mechanism does not only kill cells with high efficiency and therefore should be studied for treatment, but also displays a possibility to address certain cells with a specific protein cargo if used as a molecular delivery tool. Concerning both issues, binding and translocation of the channel are the crucial steps to either block or modify the system in the desired way. To gain deeper insight into the transport of binary toxins the structure of the B subunit is of great importance, but being a membrane protein, no crystal could be obtained up to now for either protective antigen (PA) of Anthrax toxin or any other AB7-type binding domain. Therefore, the method of choice in this work is an electro-physical approach using the so-called black-lipid-bilayer system for determination of biophysical constants. Additionally, diverse cell based assays serve as a proving method for the data gained during in vitro measurements. Further information was gathered with specially designed mutants of the protein channel. The first part of this thesis focuses on the translocation process and its possible use as a molecular tool to deliver protein cargo into special cell types. The task was addressed by measuring the binding of different effector proteins related and unrelated to the AB7 toxin family. These proteins were tested in titration experiments for the blockage of the ion current through a membrane saturated with toxin channels. Especially the influence of positively charged His-tags has been determined in detail for PA and C2II. As described in chapter 2, a His-tag transferred the ability of being transported by PA, but not by C2II, to different proteins like EDIN (from S. aureus) in vitro and in cell-based experiments. This process was found to change the well-known voltage-dependency of PA to a huge extend and therefore is related to membrane potentials which play a crucial role in many processes in living cells. Chapter 3 sums up findings, which depict that binding partners of PA share certain common motives. These could be detected in a broad range of substrates, ranging from simple ions in an electrolyte over small molecules to complex protein effectors. The gathered information could be further used to design blocker-substrates for treatment of Anthrax infections or tags, which render PA possible as a molecular syringe for cargo proteins. The deeper insight to homologies and differences of binary toxin components is the core of chapter 4, in which the cross-reactivity of Anthrax and C2-toxin was analyzed. The presented results lead to a better understanding of different motives involved in binding and translocation to and via the B components PA and C2II, as well as the enzymatically active A moieties edema factor (EF), lethal factor (LF) and C2I. In the second part of the thesis, the blockage of intoxication is the center of interest. Therefore, chapter 5 focuses on the analysis of specially designed blocker-substrate molecules for PA. These molecules form a plug in the pore, abolishing translocation of the enzymatic units. Especially, if multi-resistant strains of Anthrax (said to be already produced in Russia as a biological weapon) are taken into consideration, these substrates could stop intoxication and buy time, to deal with the infection. Chapter 6 describes the blockage of PA-channels by anti-His antibody from the trans-side of the porin, an effect which was not described for any other antibody before. Interestingly, even mutation of the estimated target amino acid Histidine 310 to Glycine could not interfere with this ionic strength dependent binding. N2 - Bakterielle Protein-Toxine gehören zu den wirksamsten bekannten Toxinen. In vielfältigen Variationen findet man sie in allen Bereichen des Lebens. Einige werden von den Bakterien während einer Infektion freigesetzt und übernehmen einen wichtigen Part in der Pathogenität. Andere werden zu Verteidigungszwecken sekretiert und können in verdorbenen Lebensmitteln gefunden werden. Was die Wirkung binärer Toxine der AB7-Gruppe angeht, so gehören diese zu den potentesten und gefährlichsten Giften weltweit. Selbst kleine Mengen dieser Proteine können schwerste Symptome während einer Infektion mit Bakterien der Gattung Clostridium oder Bacillus verursachen. Abgesehen von der Bedrohung die durch die Toxine ausgeht, zeichnen sie sich durch einen einzigartigen Intoxikationsmechanismus aus. AB7-Toxine sind aus einer porenformenden Domäne B, die als eine Art molekulare Injektionskanüle fungiert, und enzymatisch aktiven Proteinen A zusammengesetzt. Der komplexe Wirkmechanismus ermöglicht es nicht nur Zellen in höchst effektiver Weise abzutöten und sollte deswegen zu Behandlungszwecken untersucht werden, sondern könnte auch als molekulares Werkzeug umfunktioniert werden, um spezielle Zellen mit gewünschten Proteinen zu beladen. Für beide Zwecke (Blockierung und gezielter Transport) ist die Bindung an, und der Transport durch die porenformende Domäne von größter Bedeutung. Die Struktur der B-Domäne ist wichtig um tiefere Einsicht in den Transportprozess der binären Toxine zu ermöglichen. Leider ist es bisher nicht gelungen die Kristallstruktur des Membranproteins protective antigen (PA) von Anthrax oder irgendeiner anderen Bindedomäne eines AB7-Toxins zu lösen. Deshalb wurde in dieser Arbeit ein elektrophysiologischer Ansatz zur Bestimmung der biophysikalischen Konstanten des Prozesses gewählt, die Black-lipid-Bilayer Methode. Zusätzliche Versuche an Zellen und mit Mutanten der Proteine dienen zur Absicherung der in vitro Ergebnisse. Im ersten Teil der Arbeit wird der Translokationsmechanismus, und die mögliche Nutzung dessen als molekulares Werkzeug näher behandelt. Dies erfolgte durch Bindungsstudien an PA und C2II mit Effektoren (sowohl aus der AB7-Familie, als auch nicht näher verwandt). In Kapitel 2 wird beschrieben, dass ein His-Tag es EDIN (von S. aureus) und anderen Effektoren ermöglicht, dass ein Transport durch PA-Poren in vitro und in vivo stattfindet (nicht aber durch C2II). Ebenfalls konnte eine starke Abweichung in der bekannten Spannungsabhängigkeit von PA festgestellt werden, die den Prozess eindeutig mit den Membranpotentialen in Verbindung bringt, die häufig eine wichtige Rolle im Metabolismus spielen. Kapitel 3 fasst zusammen, dass Bindungspartner von PA bestimmte Motive beinhalten, die von Substraten wie Ionen in Elektrolyten, über kleine Moleküle, bis hin zu komplexen Proteinen reichen. Diese Erkenntnisse könnten genutzt werden um Blockersubstanzen zur Behandlung von Anthrax, oder Tags zur Aufnahme durch Anthrax zu designen. Neueste Befunde zu Homologien und Unterschieden zwischen den Komponenten der binären Toxine sind der Kern von Kapitel 4, in dem die Kreuzreaktivität von Anthrax und C2-Toxin analysiert wurde. Die enthaltenen Daten ermöglichen einen tieferen Einblick in die verschiedenen Stufen der Bindung und Translokation des edema factor (EF), des lethal factor (LF) und von C2I an und durch PA und C2II. Im zweiten Teil rückt die Blockierung der Intoxikation in den Fokus. Die Analyse speziell designter Blockersubstanzen für PA wird in Kapitel 5 behandelt. Diese formen einen Porenverschluss, der weiteren Transport von Toxinkomponenten verhindert. Eine besondere Bedeutung könnten diese Substanzen im Zusammenhang mit Multiresitenz bei Anthrax Stämmen (vermutlich in Russland als biologische Waffe hergestellt) zur Verhinderung von Symptomen und der Verlängerung der Zeit spielen, die man hat um neue Antibiotika zu erzeugen. Kapitel 6 beschreibt zum ersten Mal die Blockierung von PA-Poren mittels eines Anti-His Antikörpers von der trans-Seite aus. Interessanterweise trat diese Ionenstärke abhängige Blockierung, auch bei einer Histidin zu Glycin Mutation an der Stelle 310 (vermutete Bindeposition) auf. KW - Bacillus anthracis KW - Translokation KW - Toxin KW - Protective antigen KW - Bindungsprozess KW - Black-lipid-bilayer KW - Bacillus anthracis KW - protective antigen KW - Anthrax Toxin KW - translocation Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-70052 ER - TY - THES A1 - Sengupta, Sanchita T1 - Bio-inspired Zinc Chlorin Dye Assemblies for Supramolecular Electronics T1 - Bio-adaptierte Zink-Chlorin Farbstoffverbände für supramolekulare Elektronik N2 - Chlorophylls are the most important pigments owing to their involvement in photosynthesis. They perform multiple functions that arise due to their optical and redox as well as packing properties. Semisynthetic zinc chlorins investigated in this thesis are the counterparts for the natural protein-free bacteriochlorophyll (BChl) c assemblies in light-harvesting (LH) systems in bacterial chlorosomes. The major advantage of the zinc chlorin model compounds over the native BChls lies in their facile semisynthetic accessibility from chlorophyll a (Chl a), their higher chemical stability and the possibility to influence their packing by suitable chemical modifications of peripheral side chains. Whilst the favorable excitonic properties and the suitability of ZnChl and natural BChl c dye aggregates for long distance exciton transport are well documented, charge transport properties of aggregates of semisynthetic ZnChls are hitherto unexplored. The present study involves structural elucidations of aggregates of a variety of semisynthetic zinc chlorin derivatives in solution, in solid state and on surfaces by combination of spectroscopic, crystallographic and microscopic techniques, followed by investigation of charge transport properties and conductivities of these aggregates. Chart 1 shows the different ZnChls synthesized in this work that are functionalized with hydroxy or methoxy substituents at 31 position and contain different substituents at the 172-position benzyl ester functional group. The self-assembly of these dyes is strongly dependent upon their chemical structures. While ZnChls 1a, 2a, 3, which are functionalized with 31-hydroxy group bearing dodecyl and oligoethylene glycol side chains form well-soluble rod aggregates, the corresponding 31-methoxy functionalized counterparts 1b, 2b form stacks in solution and on surfaces. These supramolecular polymers have been studied in detail in Chapter 3 by UV/Vis and circular dichroism (CD) spectroscopy and dynamic light scattering (DLS). These studies provided useful insights into the aggregation process of these two types of aggregates. Whereas 31-hydroxy functionalized ZnChl 1a self-assemble into rod aggregates via an isodesmic mechanism, corresponding stack aggregates of ZnChl 1b are formed by a cooperative nucleation-elongation pathway. Detailed electron microscopic studies such as transmission electron microscopy (TEM) and scanning transmission electron microscopy (STEM) provided unequivocal evidence for hollow tubular nanostructures of water-soluble 31-hydroxy zinc chlorin 3 aggregates for the first time. The measured tube diameter of ~ 5-6 nm of these aggregates is in excellent agreement with electron microscopy data of BChl c rod aggregates in chlorosomes (Chloroflexus aurantiacus, diameter ~ 5-6 nm) and thus complied with the tubular model postulated by Holzwarth and Schaffner... In concord with their highly organized structures, micrometer-scale one dimensionality, robust nature and efficient charge transport capabilities, these self-assembled ZnChl nanotubular, stack and liquid crystalline assemblies are highly promising for supramolecular electronic applications. Research efforts in utilizing these assemblies for (opto)electronic device fabrication, for instance, in organic field effect transistors, should thus be rewarding in the future... N2 - Die Chlorophylle stellen in der Natur die wichtigsten Pigmente dar, weil sie verantwortlich für die Photosynthese sind und hierbei vielfältige Funktionen wahrnehmen, die sich aus ihrer Selbstassemblierung sowie den vorteilhaften optischen und Redox-Eigenschaften ergeben. Die in dieser Arbeit untersuchten semisynthetischen Zinkchlorine stellen Modellverbindungen des natürlichen Bacteriochlorophylls c (BChl c) der Lichtsammelsysteme (light-harvesting: LH) in Chlorosomen von Bakterien, jedoch ohne Proteingerüst, dar. Die entscheidenden Vorteile dieser Zinkchlorine (ZnChl) gegenüber den natürlichen BChls bestehen im einfachen semisynthetischen Zugang ausgehend von Chlorophyll a (Chl a), ihrer gesteigerten chemischen Stabilität sowie der Möglichkeit ihre Selbstassemblierung durch gezielte chemische Modifizierung der Seitenketten in der Peripherie zu steuern. Während bereits mehrfach über die vielversprechenden Redox- und excitonischen Eigenschaften von Aggregaten von ZnChl und natürlichem BChl c und den damit verbundene Voraussetzungen für Excitontransport über große Distanzen berichtet wurde, sind die Ladungstransporteigenschaften von Aggregaten der biomimetischen ZnChl bis heute unerforscht. Die vorliegende Arbeit beschäftigt sich mit der Aufklärung der Struktur von Aggregaten einer Vielzahl von semisynthetischen Zinkchlorophyllderivaten im Feststoff, in Lösung und auf Oberflächen durch die Kombination verschiedenster spektroskopischer, kristallographischer und mikroskopischer Techniken an die sich Untersuchungen zum Ladungstransport in den Aggregaten anschließen. Schema 1 zeigt die verschiedenen, in dieser Arbeit synthetisierten ZnChls, die entweder mit einer Hydroxy- oder Methoxygruppe in der 31-Position funktionalisiert sind sowie Substituenten unterschiedlicher Art, Länge und Verzweigung an der Benzylestergruppe in 172-Position tragen.Die Packung dieser Farbstoffe hängt entscheidend von ihrer chemischen Struktur ab. Während die ZnChls 1a, 2a, 3 mit 31-Hydroxygruppe und Alkylseitenketten (Dodecyl bzw. Oligoethylenglykol) gut lösliche stabförmige Aggregate bilden, lagern sich die analogen Verbindungen mit 31-Methoxygruppe (1b, 2b) zu Stapeln in Lösung und auf Oberflächen zusammen. Diese supramolekularen Polymere wurden im Detail in Kapitel 3 mit Hilfe von UV/Vis- und CD-Spektroskopie (circular dichroism: CD) sowie dynamische Lichtstreuung (dynamic light scattering: DLS) untersucht. Darüber hinaus lieferten temperaturabhängige UV/Vis- in Kombination mit DLS-Messungen wertvolle Informationen über die Aggregationsprozess dieser beiden Sorten von Aggregaten. Während sich die ZnChl 1a mit 31 Hydroxygruppe entsprechend dem isodesmischen Modell zu röhrenförmigen Aggregaten zusammenlagern, bilden sich die stapelförmigen Aggregate von 1b nach einem kooperativen Keimbildungs-Wachstums-Mechanismus (nucleation-elongation mechanism). Detaillierte elektronenmikroskopische Studien lieferten erstmals überzeugende Beweise für röhrenförmige Nanostrukturen der Aggregate des wasserlöslichen 31-Hydroxy Zinkchlorin 3. Die gemessenen Durchmesser der Röhren von ~ 5-6 nm dieser Aggregate liegen in hervorragender Übereinstimmung mit den Elektronenmikroskopie-Daten von BChl c Stabaggregaten in Chlorosomen (Chloroflexus aurantiacus, Durchmesser ~ 5-6 nm) und entsprechen damit dem von Holzwarth und Schaffner postulierten röhrenförmigen Modell... Im Einklang mit ihren hoch geordneten, robusten Strukturen, die sich eindimensional in einer Größenordnung von Mikrometeren erstrecken, sowie ihrer Fähigkeit zum effizienten Ladungs-trägertransport stellen diese selbstassemblierten Nanoröhren von ZnChls vielversprechende Ausgangsmaterialien für die Fertigung supramolekularer elektronischer Bauteile dar. Wissenschaftliche Bemühungen einige dieser Moleküle und ihre entsprechenden supramolekularen Polymere für die Fertigung von (opto-)elektronischen Bauteilen wie organischen Feldeffekttransistoren zu benutzten, stellen lohnende Aufgaben für die Zukunft dar... KW - Supramolekulare Chemie KW - Selbstorganisation KW - Chlorinderivate KW - Farbstoff KW - Selbstassemblierung KW - supramolekularen Elektronik KW - Zinkchlorine KW - Zinc Chlorin KW - Self-assembly KW - Supramolecular electronics Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-66935 ER - TY - JOUR A1 - Eberlein, Uta A1 - Bröer, Jörn Hendrik A1 - Vandevoorde, Charlot A1 - Santos, Paula A1 - Bardiès, Manuel A1 - Bacher, Klaus A1 - Nosske, Dietmar A1 - Lassmann, Michael T1 - Biokinetics and dosimetry of commonly used radiopharmaceuticals in diagnostic nuclear medicine – a review JF - European Journal of Nuclear Medicine and Molecular Imaging N2 - Purpose The impact on patients’ health of radiopharmaceuticals in nuclear medicine diagnostics has not until now been evaluated systematically in a European context. Therefore, as part of the EU-funded Project PEDDOSE.NET (www.​peddose.​net), we review and summarize the current knowledge on biokinetics and dosimetry of commonly used diagnostic radiopharmaceuticals. Methods A detailed literature search on published biokinetic and dosimetric data was performed mostly via PubMed (www.​ncbi.​nlm.​nih.​gov/​pubmed). In principle the criteria for inclusion of data followed the EANM Dosimetry Committee guidance document on good clinical reporting. Results Data on dosimetry and biokinetics can be difficult to find, are scattered in various journals and, especially in paediatric nuclear medicine, are very scarce. The data collection and calculation methods vary with respect to the time-points, bladder voiding, dose assessment after the last data point and the way the effective dose was calculated. In many studies the number of subjects included for obtaining biokinetic and dosimetry data was fewer than ten, and some of the biokinetic data were acquired more than 20 years ago. Conclusion It would be of interest to generate new data on biokinetics and dosimetry in diagnostic nuclear medicine using state-of-the-art equipment and more uniform dosimetry protocols. For easier public access to dosimetry data for diagnostic radiopharmaceuticals, a database containing these data should be created and maintained. KW - Dosimetry KW - Biokinetics KW - Diagnostic radiopharmaceuticals KW - Effective dose Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-133846 VL - 38 IS - 12 ER - TY - JOUR A1 - Gerlach, Manfred A1 - Maetzler, Walter A1 - Broich, Karl A1 - Hampel, Harald A1 - Rems, Lucas A1 - Reum, Torsten A1 - Riederer, Peter A1 - Stöffler, Albrecht A1 - Streffer, Johannes A1 - Berg, Daniela T1 - Biomarker candidates of neurodegeneration in Parkinson’s disease for the evaluation of disease-modifying therapeutics JF - Journal of Neural Transmission N2 - Reliable biomarkers that can be used for early diagnosis and tracking disease progression are the cornerstone of the development of disease-modifying treatments for Parkinson’s disease (PD). The German Society of Experimental and Clinical Neurotherapeutics (GESENT) has convened a Working Group to review the current status of proposed biomarkers of neurodegeneration according to the following criteria and to develop a consensus statement on biomarker candidates for evaluation of disease-modifying therapeutics in PD. The criteria proposed are that the biomarker should be linked to fundamental features of PD neuropathology and mechanisms underlying neurodegeneration in PD, should be correlated to disease progression assessed by clinical rating scales, should monitor the actual disease status, should be pre-clinically validated, and confirmed by at least two independent studies conducted by qualified investigators with the results published in peer-reviewed journals. To date, available data have not yet revealed one reliable biomarker to detect early neurodegeneration in PD and to detect and monitor effects of drug candidates on the disease process, but some promising biomarker candidates, such as antibodies against neuromelanin, pathological forms of α-synuclein, DJ-1, and patterns of gene expression, metabolomic and protein profiling exist. Almost all of the biomarker candidates were not investigated in relation to effects of treatment, validated in experimental models of PD and confirmed in independent studies. KW - Parkinson’s disease KW - Disease-modifying therapies KW - Neuroprotection KW - Biomarkers KW - Surrogate endpoints KW - Drug development KW - Disease progression Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-133856 VL - 119 IS - 1 ER - TY - JOUR A1 - Ondrusch, Nicolai A1 - Kreft, Jürgen T1 - Blue and Red Light Modulates SigB-Dependent Gene Transcription, Swimming Motility and Invasiveness in \(Listeria\) \(monocytogenes\) JF - PLoS ONE N2 - Background: In a number of gram-positive bacteria, including Listeria, the general stress response is regulated by the alternative sigma factor B (SigB). Common stressors which lead to the activation of SigB and the SigB-dependent regulon are high osmolarity, acid and several more. Recently is has been shown that also blue and red light activates SigB in Bacillus subtilis. Methodology/Principal Findings: By qRT-PCR we analyzed the transcriptional response of the pathogen L. monocytogenes to blue and red light in wild type bacteria and in isogenic deletion mutants for the putative blue-light receptor Lmo0799 and the stress sigma factor SigB. It was found that both blue (455 nm) and red (625 nm) light induced the transcription of sigB and SigB-dependent genes, this induction was completely abolished in the SigB mutant. The blue-light effect was largely dependent on Lmo0799, proving that this protein is a genuine blue-light receptor. The deletion of lmo0799 enhanced the red-light effect, the underlying mechanism as well as that of SigB activation by red light remains unknown. Blue light led to an increased transcription of the internalin A/B genes and of bacterial invasiveness for Caco-2 enterocytes. Exposure to blue light also strongly inhibited swimming motility of the bacteria in a Lmo0799- and SigB-dependent manner, red light had no effect there. Conclusions/Significance: Our data established that visible, in particular blue light is an important environmental signal with an impact on gene expression and physiology of the non-phototrophic bacterium L. monocytogenes. In natural environments these effects will result in sometimes random but potentially also cyclic fluctuations of gene activity, depending on the light conditions prevailing in the respective habitat. KW - Gram-positive bacteria KW - Sigma(B)-dependent stress-response KW - Non-phototrophic bacteria KW - Prfa-mediated virulence KW - NTP-binding-properties KW - Bacillus-subtilis KW - Receptor ytva KW - Lov domain KW - Factor sigma(B) Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-134050 VL - 6 IS - 1 ER - TY - JOUR A1 - Ondrusch, Nicolai A1 - Kreft, Jürgen T1 - Blue and Red Light Modulates SigB-Dependent Gene Transcription, Swimming Motility and Invasiveness in Listeria monocytogenes N2 - Background: In a number of gram-positive bacteria, including Listeria, the general stress response is regulated by the alternative sigma factor B (SigB). Common stressors which lead to the activation of SigB and the SigB-dependent regulon are high osmolarity, acid and several more. Recently is has been shown that also blue and red light activates SigB in Bacillus subtilis. Methodology/Principal Findings: By qRT-PCR we analyzed the transcriptional response of the pathogen L. monocytogenes to blue and red light in wild type bacteria and in isogenic deletion mutants for the putative blue-light receptor Lmo0799 and the stress sigma factor SigB. It was found that both blue (455 nm) and red (625 nm) light induced the transcription of sigB and SigB-dependent genes, this induction was completely abolished in the SigB mutant. The blue-light effect was largely dependent on Lmo0799, proving that this protein is a genuine blue-light receptor. The deletion of lmo0799 enhanced the red-light effect, the underlying mechanism as well as that of SigB activation by red light remains unknown. Blue light led to an increased transcription of the internalin A/B genes and of bacterial invasiveness for Caco-2 enterocytes. Exposure to blue light also strongly inhibited swimming motility of the bacteria in a Lmo0799- and SigB-dependent manner, red light had no effect there. Conclusions/Significance: Our data established that visible, in particular blue light is an important environmental signal with an impact on gene expression and physiology of the non-phototrophic bacterium L. monocytogenes. In natural environments these effects will result in sometimes random but potentially also cyclic fluctuations of gene activity, depending on the light conditions prevailing in the respective habitat. KW - Listeria monocytogenes Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-75451 ER - TY - JOUR A1 - von Bueren, André O. A1 - Oehler, Christoph A1 - Shalaby, Tarek A1 - von Hoff, Katja A1 - Pruschy, Martin A1 - Seifert, Burkhardt A1 - Gerber, Nicolas U. A1 - Warmuth-Metz, Monika A1 - Stearns, Duncan A1 - Eberhart, Charles G. A1 - Kortmann, Rolf D. A1 - Rutkowski, Stefan A1 - Grotzer, Michael A. T1 - c-MYC expression sensitizes medulloblastoma cells to radio- and chemotherapy and has no impact on response in medulloblastoma patients JF - BMC Cancer N2 - Background: To study whether and how c-MYC expression determines response to radio-and chemotherapy in childhood medulloblastoma (MB). Methods: We used DAOY and UW228 human MB cells engineered to stably express different levels of c-MYC, and tested whether c-MYC expression has an effect on radio-and chemosensitivity using the colorimetric 3-(4,5-dimethylthiazol- 2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium inner salt (MTS) assay, clonogenic survival, apoptosis assays, cell cycle analysis, and western blot assessment. In an effort to validate our results, we analyzed c-MYC mRNA expression in formalin-fixed paraffin-embedded tumor samples from well-documented patients with postoperative residual tumor and compared c-MYC mRNA expression with response to radio-and chemotherapy as examined by neuroradiological imaging. Results: In DAOY -and to a lesser extent in UW228 -cells expressing high levels of c-MYC, the cytotoxicity of cisplatin, and etoposide was significantly higher when compared with DAOY/UW228 cells expressing low levels of c-MYC. Irradiation-and chemotherapy-induced apoptotic cell death was enhanced in DAOY cells expressing high levels of c-MYC. The response of 62 of 66 residual tumors was evaluable and response to postoperative radio-(14 responders (CR, PR) vs. 5 non-responders (SD, PD)) or chemotherapy (23 CR/PR vs. 20 SD/PD) was assessed. c-MYC mRNA expression was similar in primary MB samples of responders and non-responders (Mann-Whitney U test, p = 0.50, ratio 0.49, 95% CI 0.008-30.0 and p = 0.67, ratio 1.8, 95% CI 0.14-23.5, respectively). Conclusions: c-MYC sensitizes MB cells to some anti-cancer treatments in vitro. As we failed to show evidence for such an effect on postoperative residual tumors when analyzed by imaging, additional investigations in xenografts and larger MB cohorts may help to define the exact function of c-MYC in modulating response to treatment. KW - Induced apoptosis KW - Down-regulation KW - Childhood medulloblastoma KW - Melanoma-cells KW - Cisplatin KW - Lines KW - Gene KW - Radiotherapy KW - Fibroblasts KW - Activation Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-134185 VL - 11 IS - 74 ER - TY - JOUR A1 - Förtsch, Christina A1 - Hupp, Sabrina A1 - Ma, Jiangtao A1 - Mitchell, Timothy J. A1 - Maier, Elke A1 - Benz, Roland A1 - Iliev, Asparouh I. T1 - Changes in Astrocyte Shape Induced by Sublytic Concentrations of the Cholesterol-Dependent Cytolysin Pneumolysin Still Require Pore-Forming Capacity N2 - Streptococcus pneumoniae is a common pathogen that causes various infections, such as sepsis and meningitis. A major pathogenic factor of S. pneumoniae is the cholesterol-dependent cytolysin, pneumolysin. It produces cell lysis at high concentrations and apoptosis at lower concentrations. We have shown that sublytic amounts of pneumolysin induce small GTPase-dependent actin cytoskeleton reorganization and microtubule stabilization in human neuroblastoma cells that are manifested by cell retraction and changes in cell shape. In this study, we utilized a live imaging approach to analyze the role of pneumolysin’s pore-forming capacity in the actin-dependent cell shape changes in primary astrocytes. After the initial challenge with the wild-type toxin, a permeabilized cell population was rapidly established within 20–40 minutes. After the initial rapid permeabilization, the size of the permeabilized population remained unchanged and reached a plateau. Thus, we analyzed the non-permeabilized (non-lytic) population, which demonstrated retraction and shape changes that were inhibited by actin depolymerization. Despite the non-lytic nature of pneumolysin treatment, the toxin’s lytic capacity remained critical for the initiation of cell shape changes. The non-lytic pneumolysin mutants W433F-pneumolysin and delta6-pneumolysin, which bind the cell membrane with affinities similar to that of the wild-type toxin, were not able to induce shape changes. The initiation of cell shape changes and cell retraction by the wild-type toxin were independent of calcium and sodium influx and membrane depolarization, which are known to occur following cellular challenge and suggested to result from the ion channel-like properties of the pneumolysin pores. Excluding the major pore-related phenomena as the initiation mechanism of cell shape changes, the existence of a more complex relationship between the pore-forming capacity of pneumolysin and the actin cytoskeleton reorganization is suggested. KW - Toxikologie KW - pneumolysin KW - pore formation KW - cytoskeleton Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-69084 ER - TY - THES A1 - Merkel, Carla Jennifer T1 - Characterisation of Mena Promoter Activity and Protein Expression in Wild-type and Gene-trapped Mice T1 - Charakterisierung der Mena-Promotor-Aktivität und Protein-Expression in Wildtyp- und Gene-trap-Mäusen N2 - Proteins of the Ena/VASP protein family are important regulators of actin and participate in cell-cell and cell-matrix adhesions. To date, the physiological importance of Ena/VASP proteins for integrity of the cardiovascular system has remained unclear. To study cardiovascular functions of Mena and VASP, we used an established VASP knockout mouse in combination with a novel gene-trap-based model to ablate Mena function. In the mutated Mena mouse, the endogenous Mena gene is disrupted by the insertion of a β-galactosidase construct and β-galactosidase expression is under the control of the endogenous Mena promoter. X-gal staining of mouse organs revealed Mena promoter activity in smooth muscle layers of vessels, intestines and bronchioles, but also in cells of the brain, in cardiomyocytes and in the respiratory epithelium of bronchioles. In wild-type mice, Western blotting revealed differing protein expression patterns of VASP and Mena. Mena expression was observed in almost every tissue, predominantly in heart, lung, stomach, large intestine, testis, brain and eye. Additionally, the neuronalspecific Mena isoform was expressed in brain, eye, and slightly in heart and stomach. VASP protein, in contrast, was predominantly detected in spleen and thrombocytes. In gene-trapped mice, Mena expression was largely reduced in heart, lung and stomach but only slightly decreased in brain and testis. Immunofluorescence microscopy revealed colocalisation of Mena and F-actin at intercalated discs of cardiomyocytes and strong colocalisation of Mena and α- smooth-muscle-actin in vessels and bronchioles. Functional analysis of Mena/VASP-mutated and wild-type mice using electrocardiography suggested that the depletion of either Mena or VASP does not interfere with normal heart function. However, in double-deficient mice, the resting heart rate was significantly increased, probably reflecting a mechanism to compensate defects in ventricle contraction and to maintain a normal cardiac output. In agreement, cardiac catheter investigations suggested dilated cardiomyopathy in doubledeficient mice. Thus, although Western blot analysis showed differing protein expression patterns of Mena and VASP, these findings suggest that Mena and VASP mutually compensate for each other. Concerning Mena, we propose an important role of the protein in vessel walls, cardiomyocytes and bronchioles. N2 - Proteine der Ena/VASP-Familie sind wichtige Regulatoren der Aktin-Dynamik und sind Bestandteile von Zell-Zell- und Zell-Matrix-Kontakten. Bis heute ist die physiologische Bedeutung der Ena/VASP-Proteine speziell im kardiovaskulären System noch nicht geklärt. Um die kardiovaskuläre Funktion von Mena (mammalian Ena) und VASP zu untersuchen, nutzten wir eine etablierte VASP-Knockout-Maus in Kombination mit einem neuen Gene-trap-Maus-Modell, welches die Mena-Funktion ausschaltet. In der mutierten Mena-Maus wird das endogene Mena-Gen durch die Insertion eines β-Galaktosidase-Konstrukts gespalten, sodass die Mena-Funktion ausfällt und die β-Galaktosidase-Expression unter der Kontrolle des endogenen Mena-Promoters steht. X-Gal-Färbungen von Mausorganen ließen Mena-Promoter-Aktivität in glatter Muskulatur von Gefäßen, Darm und Bronchiolen, aber auch in Zellen des Gehirns, in Kardiomyozyten und im respiratorischen Flimmerepithel der Bronchiolen erkennen. In Wildtyp-Mäusen, zeigten Western-Blot-Untersuchungen unterschiedliche Protein-Expressionsmuster für VASP und Mena. Mena-Expression wurde in fast allen Geweben entdeckt, hauptsächlich in Herz, Lunge, Magen, Dickdarm, Hoden, Gehirn und in den Augen. Zusätzlich wurde die neuronale Mena-Isoform im Gehirn, in den Augen und ein wenig auch in Herz und im Magen exprimiert. Im Gegensatz dazu, wurde VASP hauptsächlich in Thrombozyten und in Milzgewebe gefunden. In den auf dem Gene-trap basierenden Mäusen war die Expression von Mena im Herz, in der Lunge und im Magen deutlich reduziert, während nur eine leichte Verringerung im Gehirn und im Hodengewebe festzustellen war. Immunfluoreszenz-Mikroskopie legten Kolokalisation von Mena und F-Aktin an Glanzstreifen von Kardiomyozyten und deutliche Kolokalisation von Mena und glattmuskulärem Aktin in Gefäßen und Bronchien dar. Funktionsanalysen von Mena/VASPmutierten und Wildtyp-Mäusen anhand von EKG-Aufzeichnungen, ließen vermuten, dass ein Verlust von entweder Mena oder VASP die normale Herzfunktion nicht negativ beeinträchtigt. Wohingegen die Ruheherzrate von doppeldefizienten Mäusen deutlich erhöht war, was möglicherweise auf einen Mechanismus zur Kompensation der defizienten Ventrikelkontraktion zurückzuführen ist, um ein normales Herz-Zeit-Volumen aufrecht zu erhalten. Dies stimmt mit Herzkatheter-Untersuchungen überein, die auf eine Dilatative Kardiomyopathie bei doppeldefizienten Mäusen hindeuteten. Folglich ist davon auszugehen, dass Mena- und VASP-Proteine füreinander kompensieren können, obwohl Western-Blot-analysen unterschiedliche Expressionsmuster gezeigt haben. Mena betreffend, vermuten wir eine wichtige Rolle des Proteins in Gefäßwänden, in Kardiomyozyten und in Bronchien. KW - Spectrin KW - Genfallen-Insertion KW - Vasodilatator-stimuliertes Phosphoprotein KW - Mena KW - Mena-Promotor-Aktivität KW - X-Gal-Färbung KW - Mena KW - VASP KW - Mena promoter ativity KW - gene-trap KW - X-Gal staining KW - Spectrin Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-70414 ER - TY - THES A1 - Schneider, Matthias T1 - Characterisation of Metalloprotease-mediated EGFR Signal Transactivation after GPCR Stimulation T1 - Charakterisierung der EGFR Signaltransaktivierung nach GPCR Stimulation N2 - In the context of metalloprotease-mediated transactivation of the epidermal growth factor receptor, different monoclonal antibodies against ADAM17 / TACE were characterized for their ability to block the sheddase. Activity of some of them was observed at doses between 2µg/mL and 10µg/mL. Kinetic analyses showed their activity starting at around 30 minutes. In cellular assays performed with the antibodies, especially upon treatment of cells with sphingosine-1-phosphate a reduction in proliferation was observed with some candidates. Moreover this study provides potential new roles for ß-Arrestins. Their involvement in the triple membrane-passing signal pathway of EGFR transactivation was shown. Furthermore, in overexpressing cellular model systems, an interaction between ADAM17 and ß-Arrestin1 could be observed. Detailed analysis discovered that phosphorylation of ß-Arrestin1 is crucial for this interaction. Additionally, the novel mechanism of UV-induced EGFR transactivation was extended to squamous cell carcinoma. The mechanism happens in a dose dependent manner and requires a metalloprotease to shed the proligand Amphiregulin. The involvement of both ADAM9 and ADAM17, being the metalloproteases responsible for this cleavage, was shown for SCC9 cells. N2 - Im Rahmen dieser Arbeit wurden verschiedene monoklonale Antikörper gegen ADAM17 / TACE im Kontext der Metalloprotease-vermittelten Transaktivierung des Epidermalen Wachstumsfaktors auf ihre Fähigkeit hin untersucht, die Proteaseaktivität zu unterdrücken. Einige von Ihnen zeigten inhibitorische Aktivität bei Konzentrationen zwischen 2µg/ml und 10µg/ml. Die Untersuchung der Zeitabhängigkeit ihrer Wirkungsweise ergab eine Aktivität ab 30 Minuten Vorinkubation. In zellulären Versuchen konnte eine Verminderung der Proliferation besonders nach Stimulation mit Sphingosin-1-Phosphat gezeigt werden. Darüber hinaus konnten möglich neue Funktionen von ß-Arrestinen gezeigt werden. Eine Beteiligung am „triple membrane-passing“ Signalwegs der Transaktivierung des Epidermalen Wachstumsfaktors wurde dargestellt. Zudem wurde eine Interaktion von ß-Arrestin1 und ADAM17 in überexprimierenden Zellsystemen gezeigt. Detaillierte Analysen belegten, dass die Phosphorylierung von ß-Arrestin1 eine notwendige Voraussetzung dafür ist. Weiterhin wurde der neue Mechanismus der UV-vermittelten Aktivierung des epidermalen Wachstumsfaktors auf Plattenephithelkarzinom-Zellen ausgeweitet. Er findet in einer dosisabhängigen Form statt und bedarf einer Metalloprotease zum Aktivieren des Liganden Amphiregulin. Sowohl ADAM9 als auch ADAM17 wurden als die verantwortlichen Metalloproteasen in den untersuchten SCC9 Zellen ermittelt. KW - Epidermaler Wachstumsfaktor-Rezeptor KW - G-Protein gekoppelte Rezeptoren KW - Metalloprotease KW - Krebs KW - EGF Rezeptor KW - Transaktivierung KW - GPCR KW - UV KW - EGFR Transactivation KW - Metalloprotease KW - GPCR KW - Cancer KW - UV Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-65105 ER - TY - JOUR A1 - Beyersdorf, Niklas A1 - Werner, Sandra A1 - Wolf, Nelli A1 - Herrmann, Thomas A1 - Kerkau, Thomas T1 - Characterization of a New Mouse Model for Peripheral T Cell Lymphoma in Humans JF - PLoS One N2 - Peripheral T cell lymphomas (PTCLs) are associated with a poor prognosis due to often advanced disease at the time of diagnosis and due to a lack of efficient therapeutic options. Therefore, appropriate animal models of PTCL are vital to improve clinical management of this disease. Here, we describe a monoclonal CD8\(^+\) CD4\(^−\) αβ T cell receptor Vβ2\(^+\) CD28\(^+\) T cell lymphoma line, termed T8-28. T8-28 cells were isolated from an un-manipulated adult BALB/c mouse housed under standard pathogen-free conditions. T8-28 cells induced terminal malignancy upon adoptive transfer into syngeneic BALB/c mice. Despite intracellular expression of the cytotoxic T cell differentiation marker granzyme B, T8-28 cells appeared to be defective with respect to cytotoxic activity as read-out in vitro. Among the protocols tested, only addition of interleukin 2 in vitro could partially compensate for the in vivo micro-milieu in promoting growth of the T8-28 lymphoma cells. KW - T cells KW - cytotoxic T cells KW - mouse models KW - interleukins KW - cell staining KW - lymphomas KW - fluorescence-activated cell sorting KW - lymph nodes Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-137946 VL - 6 IS - 12 ER - TY - THES A1 - Schlipp [verh.: Wölfel], Angela T1 - Characterization of anti-beta1-adrenoceptor antibodies with Förster resonance energy transfer microscopy T1 - Charakterisierung von anti-beta1-Adrenozeptor Antikörpern mittels Förster Resonanz Energie Transfer Mikroskopie N2 - Dilated cardiomyopathy (DCM) represents an important subgroup of patients suffering from heart failure. The disease is supposed to be associated with autoimmune mechanisms in about one third of the cases. In the latter patients functionally active conformational autoantibodies directed against the second extracellular loop of the β1-adrenergic receptor (AR, β1ECII-aabs) have been detected. Such antibodies chronically stimulate the β1-AR thereby inducing the adrenergic signaling cascade in cardiomyocytes, which, in the long run, contributes to heart failure progression. We analyzed the production of cAMP after aab-mediated β1-AR activation in vitro using a fluorescence resonance energy transfer (FRET) assay. This assay is based on HEK293 cells stably expressing human β1-AR as well as the cAMP-sensor Epac1-camps. The assay showed a concentration-dependent increase in intracellular cAMP upon stimulation with the full agonist (-) isoproterenol. This response was comparable to results obtained in isolated adult murine cardiomyocytes and was partially blockable by a selective β1-AR antagonist. In the same assay poly- and monoclonal anti-β1ECII-abs (induced in different animals) could activate the adrenergic signaling cascade, whereas isotypic control abs had no effect on intracellular cAMP levels. Using the same method, we were able to detect functionally activating aabs in the serum of heart failure patients with ischemic and hypertensive heart disease as well as patients with DCM, but not in sera of healthy control subjects. In patients with DCM we observed an inverse correlation between the stimulatory potential of anti-β1-aabs and left ventricular pump function. To adopt this assay for the detection of functionally activating anti-β1ECII-aabs in clinical routine we attempted to establish an automated large-scale approach. Neither flow cytometry nor FRET detection with a fluorescence plate reader provided an acceptable signal-to-noise ratio. It was possible to detect (-) isoproterenol in a concentration-dependent manner using two different FRET multiwell microscopes. However, due to focus problems large-scale detection of activating anti-β1ECII-abs could not be implemented. Neutralization of anti-β1-aabs with the corresponding epitope-mimicking peptides is a possible therapeutic approach to treat aab-associated autoimmune DCM. Using our FRET assay we could demonstrate a reduction in the stimulatory potential of anti-β1ECII-abs after in vitro incubation with β1ECII-mimicking peptides. Cyclic (and to a lesser extent linear) peptides in 40-fold molar excess acted as efficient ab-scavengers in vitro. Intravenously injected cyclic peptides in a rat model of DCM also neutralized functionally active anti-β1ECII-abs efficiently in vivo. For a detailed analysis of the receptor-epitope targeted by anti-β1ECII-abs we used sequentially alanine-mutated β1ECII-mimicking cyclic peptides. Our data revealed that the disulfide bridge between the cysteine residues C209 and C215 of the human β1-AR appears essential for the formation of the ab-epitope. Substitution of further amino acids relevant for ab-binding in the cyclic scavenger peptide by alanine reduced its affinity to the ab and the receptor-activating potential was blocked less efficiently. In contrast, the non-mutant cyclic peptide almost completely blocked ab-induced receptor activation. Using this ala-scan approach we were able to identify a “NDPK”-epitope as essential for ab binding to the β1ECII. In summary, neutralization of conformational activating anti-β1ECII-(a)abs by cyclic peptides is a plausible therapeutic concept in heart failure that should be further exploited based on the here presented data. N2 - Dilatative Kardiomyopathie (DCM) stellt eine wichtige Subgruppe von Patienten mit Herzinsuffizienz dar und ist vermutlich in etwa einem Drittel der Fälle mit einem Autoimmunmechanismus assoziiert. In diesen Patienten konnten funktionell aktive konformationelle Autoantikörper gegen die zweite extrazelluläre Schleife des β1-adrenergen Rezeptors (Anti-β1ECII-AAK) nachgewiesen werden. Diese AK stimulieren chronisch den β1-AR und induzieren dadurch die adrenerge Signaltransduktionskaskade in Kardiomyozyten, was, auf lange Sicht, zur Verschlimmerung der Herzinsuffizienz beiträgt. Mittels eines Fluoreszenz-Resonanz Energie Transfer (FRET) Assays analysierten wir die Bildung von cAMP nach aab-vermittelter β1-AR Aktivierung in vitro. Dieser Assay verwendet HEK293 Zellen, die den humanen β1-AR sowie den cAMP-Sensor Epac1-camps stabil exprimieren. Der Assay zeigte einen konzentrationsabhängigen Anstieg von cAMP bei Stimulation mit dem vollen Agonisten (-) Isoproterenol. Diese Antwort war mit den Ergebnissen an isolierten adulten murinen Kardiomyozyten vergleichbar und konnte durch einen selektiven β1-AR Antagonist blockiert werden. In verschiedenen Tieren induzierte poly- und monoklonale Anti-β1¬ECII-abs konnten die adrenerge Signalkaskade in dem gleichen FRET Assay aktivieren, wogegen isotypische Kontroll-AK keine intrazellulären cAMP Änderungen herbeiführten. Mit dem gleichen Ansatz konnten wir funktionell aktivierende AAK im Serum von Herzinsuffizienzpatienten mit ischämischer und hypertensiver Herzerkrankung sowie bei Patienten mit dilatativer Kardiomyopathie nachweisen, jedoch nicht im Serum von gesunden Kontrollpersonen. Bei Patienten mit dilatativer Kardiomyopathie beobachteten wir eine inverse Korrelation zwischen dem stimulierenden Potential der Anti-β1-AAKs und der linksventrikulären Pumpfunktion. Um diesen Assay zur Detektion funktionell aktivierender Anti-β1ECII-aabs in der klinischen Routinediagnostik einzusetzen, versuchten wir ein automatisiertes Hochdurchsatzverfahren zu etablieren. Weder die Durchflusszytometrie noch die FRET Detektion mittels eines Fluoreszenz Plattenlesegeräts wiesen einen akzeptabelen Signal-zu-Rausch-Quotienten auf. Es gelang mit zwei verschiedenen FRET-Multiwell-Mikroskopsystemen die Aktivierung durch (-) isoproterenol konzentrationsabhängig zu detektieren, allerdings war es aufgrund von Fokusproblemen nicht möglich aktivierende Anti- β1¬ECII-AAKs im Hochdurchsatzverfahren zu detektieren. Einen möglichen Therapieansatz zur Behandlung der Anti-β1-AAK-assoziierten autoimmunen DCM stellt die Neutralisierung der AAKs mittels korrespondierender Epitop-imitierender Peptide dar. Wir konnten im FRET Assay eine Reduktion des aktivierenden Effekts von Anti-β1¬ECII-AAKs nach in vitro Inkubation mit β1¬ECII-imitierenden Peptiden nachweisen. Hierbei erwiesen sich zyklische (in geringerem Maß als lineare) Peptide in 40-fachem molarem Überschuss als effektive Antikörper-„Fänger“ in vitro. Eine intravenöse Gabe der Zyklopeptide in einem Rattenmodell der DCM neutralisierte funktionell aktivierende Anti-β1¬ECII-abs ebenfalls effizient in vivo. Zur genaueren Analyse des von Anti-β1¬ECII-AAK gebundenen Rezeptor-Epitops setzten wir sequentiell Alanin-mutierte β1ECII-imitierende Zyklopeptide ein. Unsere Daten zeigten, dass die Disulfidbrücke zwischen den Cysteinresten C209 und C215 des humanen β1¬AR essentiell für die Ausbildung des AAK-Epitops zu sein scheinen. Ein Austausch weiterer AK-bindungsrelevanter Aminosäuren im zyklischen Fängerpeptid durch Alanin verminderte dessen Avidität zum AK und inhibierte dessen Rezeptor-aktivierendes Potential weniger effizient. Im Gegensatz dazu verhinderte das nicht-mutierte Zyklopeptid nahezu vollständig die AK-vermittelte Rezeptoraktivierung. Durch diesen Ala-Scan Ansatz konnten wir ein „NDPK“-Epitop identifizieren, das für die AK-Bindung an β1¬ECII essentiell zu sein scheint. Zusammenfassend ist festzuhalten, dass die Neutralisation von konformationellen aktivierenden Anti-β1¬ECII-(A)AKs durch Zyklopeptide ein viel versprechendes Therapiekonzept bei Herzinsuffizienz darstellt, das im Hinblick auf die hier vorgestellten Daten weiter ausgebaut werden sollte. KW - Adrenerger Rezeptor KW - Beta-1-Rezeptor KW - Antikörper KW - Fluoreszenz-Resonanz-Energie-Transfer KW - Kongestive Herzmuskelkrankheit KW - Adrenergic receptor KW - Beta-1-receptor KW - Antibodies KW - Fluorescence-resonance-energy-transfer KW - Dilated cardiomyopathy Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-67162 ER - TY - THES A1 - Salvador, Ellaine Riciel P. T1 - Characterization of Asymptomatic Bacteriuria (ABU) Escherichia coli Isolates: virulence traits and host-pathogen interactions T1 - Charakterisierung der Virulenzeigenschaften und Wirt-Pathogen-Interaktionen von asymptomatischer Bakteriurie (ABU) Escherichia coli Isolaten N2 - Urinary tract infection (UTI) is one of the most serious health problems worldwide. It accounts for a million hospital visits annually in the United States. Among the many uropathogenic bacteria, uropathogenic Escherichia coli (UPEC) is the most common causative agent of UTI. However, not all E. coli that inhabit the urinary tract can cause UTI. Some of them thrive for long periods of time in the urinary bladder without causing overt symptoms of infection. This carrier state is called asymptomatic bacteriuria (ABU). E. coli ABU isolates can live in the host without inducing host response due to deletions, insertions and point mutations in the genome leading to the attenuation of virulence genes. They therefore behave in the same way as commensals. Since bacteria that inhabit the urinary tract are said to originate from the lower intestinal tract and ABU behave in a similar way as commensals, this study compared various phenotypic and genotypic characteristics of ABU and commensal E. coli fecal isolates. The two groups did not show a strict clustering with regards to phylogenetic lineage since there appears to be overlaps in their distribution in some clonal complexes. In addition, it was observed that the UPEC virulence genes were more frequently inactivated in ABU than in fecal isolates. Hence, ABU tend to have less functional virulence traits compared to the fecal isolates. The ABU model organism E. coli 83972 which is known not only for its commensal behavior in the urinary bladder but its ability to outcompete other bacteria in the urinary tract is currently being used as prophylactic treatment in patients who have recurrent episodes of UTI at the University Hospital in Lund, Sweden. The pilot studies showed that upon deliberate long-term colonization of the patients with E. coli 83972, they become protected from symptomatic UTI. In this study, the phenotypic and genotypic characteristics of eight re-isolates taken from initially asymptomatically colonized patients enrolled in the deliberate colonization study who reported an episode of symptoms during the colonization period were investigated. Two out of the eight re-isolates were proven to be a result of super infection by another uropathogen. Six re-isolates, on the other hand, were E. coli 83972. The urine re-isolates confirmed to be E. coli 83972 were phenotypically heterogeneous in that they varied in colony size as well as in swarming motility. Four of these re-isolates were morphologically homogenous and similar to the parent isolate E. coli 83972 whereas one of them appeared phenotypically heterogenous as a mixture of smaller and normal-sized colonies. Still another re-isolate phenotypically resembled small colony variants. Meanwhile, three of the six re-isolates did not differ from the parent isolate with regards to motility. On the other hand, three exhibited a markedly increased motility compared to the parent isolate. Transcriptome analysis demonstrated the upregulation of a cascade of genes involved in flagellar expression and biosynthesis in one of the three motile re-isolates. However, upon further investigation, it was found out that the expression of flagella had no effect on bacterial adhesion to host cells in vitro as well as to the induction of host inflammatory markers. Thus, this implies that the increased motility in the re-isolates is used by the bacteria as a fitness factor for its benefit and not as a virulence factor. In addition, among the various deregulated genes, it was observed that gene regulation tends to be host-specific in that there is no common pattern as to which genes are deregulated in the re-isolates. Taken together, results of this study therefore suggest that the use of E. coli 83972 for prophylactic treatment of symptomatic UTI remains to be very promising. N2 - Harnwegsinfektionen (HWI) sind weltweit ein ernstes Gesundheitsproblem, auf welches allein in den USA jährlich ca. eine Million Krankenhausbesuche entfallen. Innerhalb der Gruppe uropathogener Bakterien stellen die uropathogenen Escherichia coli (UPEC) die wichtigsten Verursacher akuter Harnwegserkrankungen dar. Interessanterweise führen nicht alle E. coli Varianten, die den Harnweg besiedeln, zwangsläufig zu HWI. Einige von ihnen sind in der Lage, die Harnblase über einen langen Zeitraum zu kolonisieren ohne Symptome einer HWI auszulösen. Dieses Phänomen wird als asymptomatische Bakteriurie (ABU) bezeichnet. Die Eigenschaft von E. coli ABU-Isolaten innerhalb des Wirtsorganismus leben zu können, ohne eine deutliche Wirtsabwehrreaktion hervorzurufen, ist unter anderem bedingt durch Deletionen, Insertionen und Punktmutationen im bakteriellen Genom und der daraus resultierenden Inaktivierung einiger Virulenzgene. Ihre Lebensweise ist daher mit der kommensaler Organismen vergleichbar. Da die den Harnweg besiedelnden Bakterien mit hoher Wahrscheinlichkeit ihren Ursprung im unteren Darmtrakt haben und sich die ABU-Isolate ähnlich der Kommensalen verhalten, wurden in dieser Arbeit zahlreiche phäno- und genotypische Charakteristika von ABU-Isolaten mit denen kommensaler E. coli-Fäkalisolate verglichen. Für diese beiden Gruppen konnte hinsichtlich ihrer phylogenetischen Abstammung keine strikte Clusterbildung festgestellt werden, da ihre Verteilung in einigen klonalen Komplexen Überlappungen aufwies. Es zeigte sich jedoch, dass die UPEC-Virulenzgene in den ABU-Isolaten häufiger inaktiviert vorlagen als in den Fäkalisolaten. Demzufolge scheinen die ABU-Isolate weniger funktionale Virulenzeigenschaften zu besitzen als die Fäkalisolate. Der Modell-ABU Stamm E. coli 83972 ist sowohl für sein kommensales Verhalten in der menschlichen Blase bekannt, als auch für seine Fähigkeit, andere Bakterien aus dem Harntrakt zu verdrängen. Er wird gegenwärtig am Universitätsklinikum in Lund (Schweden) als prophylaktisches Therapeutikum bei der Behandlung von Patienten mit rezidivierenden HWI eingesetzt. In Pilotstudien konnte gezeigt werden, dass eine vorsätzliche Langzeit-Kolonisierung von Patienten mit E. coli 83972 zum Schutz vor symptomatischen HWI führt. In der vorliegenden Arbeit wurden die phäno- und genotypischen Charakteristika von acht Patienten-Reisolaten dieser Langzeitstudie untersucht. Die Reisolate wurden aus zunächst asymptomatisch kolonisierten Patienten isoliert, die allerdings im Verlauf der Langzeit-Kolonisierung über eine Reihe von Symptomen klagten. Zwei dieser acht Reisolate waren nachweislich das Resultat einer Superinfektion mit einem anderen uropathogenen Bakterium. Die restlichen sechs Reisolate konnten jedoch als E. coli 83972 identifiziert werden. Für diese sechs Reisolate war eine phänotypische Heterogenität zu beobachten, die sich zum einen in variierender Koloniegröße, zum anderen in unterschiedlichem Schwärmverhalten zeigte: Vier der Reisolate entsprachen morphologisch dem Ausgangsstamm E. coli 83972, wohingegen ein Reisolat phänotypisch abweichend als Mischung von kleineren und normal-großen Kolonien in Erscheinung trat. Ein weiteres Reisolat ähnelte phänotypisch sogenannten „Small Colony Variants“. Das Schwärmverhalten betreffend unterschieden sich indessen drei der sechs Reisolate vom Ausgangsstamm. Sie zeigten im Vergleich eine erhöhte Motilität. In einem dieser drei motilen Reisolate konnte mittels Transkriptomanalyse die hochregulierte Expression einer Reihe von Genen, welche für die Flagellenexpression und -biosynthese verantwortlich sind, aufgezeigt werden. Weiterführende in vitro-Untersuchungen ergaben jedoch, dass diese erhöhte Flagellenexpression weder einen verstärkenden Effekt auf die bakterielle Adhäsion an die Wirtszellen hat, noch in der Wirtszelle die Bildung von Entzündungsmarkern induziert. Dieses Ergebnis impliziert, dass die erhöhte Motilität der Reisolate als Fitnessfaktor und nicht als Virulenzfaktor zu betrachten ist. Ferner führte die genauere Analyse der deregulierten Gene zu der Annahme, dass die Genregulation in den Reisolaten wirtsspezifisch ist, da sich kein übereinstimmendes Muster bezüglich der Deregulation abzeichnete. Unter Berücksichtigung aller Ergebnisse dieser Studie lässt sich abschließend sagen, dass die Verwendung des E. coli Stammes 83972 als prophylaktisches Therapeutikum bei der Behandlung von symptomatischen HWI weiterhin als sehr vielversprechend angesehen werden kann. KW - Escherichia coli KW - Harnwegsinfektion KW - Virulenz KW - Escherichia coli KW - Urinary tract infection KW - asymptomatic bacteriuria Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-71283 ER - TY - THES A1 - Baumann, Andreas T1 - Charge Transport and Recombination Dynamics in Organic Bulk Heterojunction Solar Cells T1 - Ladungstransport und Rekombination in organischen Heterogemisch-Solarzellen N2 - The charge transport in disordered organic bulk heterojunction (BHJ) solar cells is a crucial process affecting the power conversion efficiency (PCE) of the solar cell. With the need of synthesizing new materials for improving the power conversion efficiency of those cells it is important to study not only the photophysical but also the electrical properties of the new material classes. Thereby, the experimental techniques need to be applicable to operating solar cells. In this work, the conventional methods of transient photoconductivity (also known as "Time-of-Flight" (TOF)), as well as the transient charge extraction technique of "Charge Carrier Extraction by Linearly Increasing Voltage" (CELIV) are performed on different organic blend compositions. Especially with the latter it is feasible to study the dynamics, i.e. charge transport and charge carrier recombination, in bulk heterojunction (BHJ) solar cells with active layer thicknesses of 100-200 nm. For a well performing organic BHJ solar cells the morphology is the most crucial parameter finding a trade-off between an efficient photogeneration of charge carriers and the transport of the latter to the electrodes. Besides the morphology, the nature of energetic disorder of the active material blend and its influence on the dynamics are discussed extensively in this work. Thereby, the material system of poly(3-hexylthiophene-2,5-diyl) (P3HT) and [6,6]-phenyl-C61 butyric acid methyl ester (PC61BM) serves mainly as a reference material system. New promising donor or acceptor materials and their potential for application in organic photovoltaics are studied in view of charge dynamics and compared with the reference system. With the need for commercialization of organic solar cells the question of the impact of environmental conditions on the PCE of the solar cells raises. In this work, organic BHJ solar cells exposed to synthetic air for finite duration are studied in view of the charge carrier transport and recombination dynamics. Finally, within the framework of this work the technique of photo-CELIV is improved. With the modified technique it is now feasible to study the mobility and lifetime of charge carriers in organic solar cells under operating conditions. N2 - Der Ladungstransport in ungeordneten organischen "bulk heterojunction" (Heterogemisch, Abk.: BHJ) Solarzellen stellt einen kritischen Prozess dar, der den Wirkungsgrad wesentlich beeinflusst. Aufgrund der großen Nachfrage neuer, vielversprechender Materialien für die organische Photovoltaik, ist es um so wichtiger nicht nur ihre photophysikalischen sondern auch deren elektrischen Eigenschaften zu charakterisieren. Gerade letztere erfordern experimentelle Messmethoden, die an funktionsfähigen Solarzellen angewandt werden können. Zur experimentellen Untersuchung des Landungstransportes in organischen Solarzellen werden in dieser Arbeit die Methoden der transienten Photoleitfähigkeit, auch bekannt als "Time-of-Flight" (TOF), sowie die transiente Ladungsextraktionsmethode "Charge Carrier Extraction by Linearly Increasing Voltage'' (CELIV) verwendet. Gerade Letztere ermöglicht es an Dünnschichtsystemen von nur wenigen 100 nm, eine typische Schichtdicke bei organischen Solarzellen, den Ladungstransport aber auch die Rekombination von Elektronen und Löchern zu untersuchen. Entscheidend für eine vielversprechende funktionsfähige organische BHJ Solarzelle ist dabei eine günstige Morphologie, die eine effiziente Generation von Ladungsträger, sowie deren Abführung zu den Elektroden erlaubt. Dabei wird in dieser Arbeit der Einfluss der räumlichen, als auch der der energetischen Unordnung der photoaktiven Schicht auf den Ladungstransport und der Rekombination der Ladungsträger untersucht. Das weit verbreitete Materialsystem bestehend aus Poly-3-(Hexyl) Thiophen (P3HT) und [6,6]-Phenyl C61 Buttersäure Methylester (PC61BM) dient dabei als Donator-Akzeptor Referenzsystem. Neuartige Donator- bzw. Akzeptor-Materialien und deren Potential für künftige Anwendungen in der organischen Photovoltaik werden hinsichtlich ihrer Ladungsträgereigenschaften mit dem Referenzmaterialsystem verglichen. Im Zuge der Kommerzialisierung organischer Solarzellen bzw. Solarmodulen ist die Anfälligkeit der Zellen gegenüber äußeren Umwelteinflüssen, wie Sauerstoff oder Wasser, in den Vordergrund des wissenschaftlichen Interesses gerückt. Dementsprechend wird in dieser Arbeit auch der Einfluss von synthetischer Luft auf den Transport und die Rekombination von Ladungsträgern und somit auf den Wirkungsgrad der Solarzelle untersucht und diskutiert. Schließlich wird im Rahmen dieser Arbeit eine Erweiterung der photo-CELIV Messmethode vorgestellt. Diese ermöglicht es die Lebensdauer und den Transport von Ladungsträgern in organischen Dünnschicht-Solarzellen unter realen Arbeitsbedingungen, d.h. Beleuchtung unter einer Sonne bei Raumtemperatur, zu bestimmen. KW - Photovoltaik KW - Ladungstransport KW - Rekombination KW - organische Photovoltaik KW - Ladungsträgerrekombination KW - photo-CELIV KW - organic solar cells KW - organic semicondcutors KW - recombination KW - photo-CELIV Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-64915 ER - TY - THES A1 - Hammer, Maria T1 - Charge transport in disordered organic and nanocrystalline inorganic semiconductors - Effect of charge carrier density variation T1 - Ladungstransport in ungeordneten organischen und nanokristallinen anorganischen Halbleitern - Auswirkung der Ladungsträgerdichtevariation N2 - The charge transport properties of disordered organic and nanocrystalline inorganic semiconductors as well as their combinations have been investigated in regard to the charge carrier density employing field-effect-transistor structures. The results were discussed in the framework of different theoretical models. In organic semiconductors the presence of positional and energetic disorder determines the transport of charges through the respective thin films and interfaces. The electronic disorder is characterized by statistically distributed and localized transport sites which were shown to form a Gaussian density of states. In this electronic environment the charge transport occurs via thermally activated hopping between the localized states and therefore depends on the temperature and the local electric field. Particularly, a dependence of the carrier mobility on the charge carrier concentration is observed due to filling of tail states. Inorganic nanocrystalline semiconductors, however, are expected to present a different electronic structure: Within the volume of a nanocrystallite the semiconductor is assumed to reflect the electronic properties of the crystalline bulk material. However, the outer shell is characterized by a relatively large density of surface states and correspondingly bending of the energy bands, which creates an energetic barrier between the adjacent particles. In a nanocrystalline thin film this characteristic can be rate-limiting for the inter-particle carrier transport as reflected by reduced charge carrier mobility. The effective barrier height can be reduced by controlled doping of the nanocrystals which results in improved majority carrier transfer rates across the barrier. However, doping results in the simultaneous increase of the defect density and consequently to enhanced limitation of the mobility due to charge carrier scattering. In the experiments, thin films of commercially available p- and n-type organic semiconductors (P3HT, and two derivatives of PCBM) were investigated in field-effect transistor structures. Further, sol-gel synthesized n-type nanocrystalline-ZnO (nc-ZnO) with varied doping concentration (agent: aluminum Al$^{3+}$) was introduced in order to establish an alternative way of customizing the charge transport properties of the neat material and in combination with the organic polymer semiconductor P3HT. N2 - Der Ladungstransport in ungeordneten organischen und nanokristallinen anorganischen Halb\-leitern sowie in deren Mischsystemen wurde im Hinblick auf die Ladungsträgerdichte in Feldeffekttransistoren untersucht. Die Ergebnisse wurden anhand verschiedener theoretischer Modelle diskutiert. In organischen Halbleitern bestimmt die räumliche und energetische Unordnung den Ladungstransport durch die jeweiligen dünnen Schichten und Grenzflächen. Dabei ist die elektronische Unordnung charakterisiert durch statistisch verteilte und lokalisierte Transportzustände, die eine Gaußsche Zustandsdichte zeigen. In dieser elektronischen Umgebung ist der Ladungstransport durch thermisch aktiviertes Hüpfen zwischen lokalisierten Zuständen gekennzeichnet und hängt demzufolge von der Temperatur und dem lokalen elektrischen Feld ab. Insbesondere wurde eine Abhängigkeit der Mobilität von der Ladungsträgerdichte beobachtet, was eine Folge des Füllens energetisch tief liegender Zustände ist. Anorganische nanokristalline Halbleiter zeigen eine andere elektronische Struktur: Im Volumen des Nanokristalls kann man vereinfacht die elektrischen Eigenschaften des jeweiligen Einkristalls annehmen. Jedoch ist die äußere Hülle durch eine relativ hohe Dichte an Oberflächenzuständen und einer damit einhergehenden Energiebandverbiegung charakterisiert. Daher ergibt sich eine Energiebarriere zwischen den angrenzenden Kristalliten. In nanokristallinen dünnen Schichten kann diese Eigenschaft den Ladungstransport limitieren, was durch eine verringerte Beweglichkeit widergespiegelt wird. Die effektive Barrierenhöhe kann durch kontrollierte Dotierung der Nanokristalle vermindert werden, was die Transferraten über die Barriere erhöht. Jedoch führt Dotierung gleichzeitig zu einer Zunahme der Defektdichte und folglich zu einer weiteren Minderung der Beweglichkeit durch Streuprozesse der Ladungsträger. In den hier gezeigten Experimenten wurden dünne Schichten bestehend aus kommerziell erhältlichen organischen p- und n-Halbleitern (P3HT und zwei Derivate von PCBM) in Feldeffekttransistorstrukturen untersucht. Des weiteren wurde Sol--Gel synthetisiertes n-leitendes nanokristallines ZnO (nc-ZnO) mit variiertem Aluminium Dotierlevel eingeführt, was einen alternativen Weg aufzeigt, die Eigenschaften des Ladungstransports sowohl im reinen Material als auch in dessen Kombination mit dem organischen Polymer P3HT einzustellen. KW - Ladungstransport KW - Halbleiterschicht KW - organische ungeordnete Halbleiter KW - anorganische geordnete Halbleiter KW - Ambipolarer Ladungstransport KW - electronic transport in nanocrystalline materials KW - organic-inorganic hybrid nanostructures KW - charge carrier transport in organic thin films Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-55188 ER - TY - JOUR A1 - Endesfelder, Ulrike A1 - Malkusch, Sebastian A1 - Flottmann, Benjamin A1 - Mondry, Justine A1 - Liguzinski, Piotr A1 - Verveer, Peter J. A1 - Heilemann, Mike T1 - Chemically Induced Photoswitching of Fluorescent Probes - A General Concept for Super-Resolution Microscopy N2 - We review fluorescent probes that can be photoswitched or photoactivated and are suited for single-molecule localization based super-resolution microscopy. We exploit the underlying photochemical mechanisms that allow photoswitching of many synthetic organic fluorophores in the presence of reducing agents, and study the impact of these on the photoswitching properties of various photoactivatable or photoconvertible fluorescent proteins. We have identified mEos2 as a fluorescent protein that exhibits reversible photoswitching under various imaging buffer conditions and present strategies to characterize reversible photoswitching. Finally, we discuss opportunities to combine fluorescent proteins with organic fluorophores for dual-color photoswitching microscopy. KW - Super-Resolution Microscopy KW - photoswitchable organic fluorophores KW - fluorescent proteins KW - super-resolution KW - PALM KW - dSTORM Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-74896 ER - TY - JOUR A1 - Endesfelder, Ulrike A1 - Malkusch, Sebastian A1 - Flottmann, Benjamin A1 - Mondry, Justine A1 - Liguzinski, Piotr A1 - Verveer, Peter J. A1 - Heilemann, Mike T1 - Chemically Induced Photoswitching of Fluorescent Probes - A General Concept for Super-Resolution Microscopy JF - Molecules N2 - We review fluorescent probes that can be photoswitched or photoactivated and are suited for single-molecule localization based super-resolution microscopy. We exploit the underlying photochemical mechanisms that allow photoswitching of many synthetic organic fluorophores in the presence of reducing agents, and study the impact of these on the photoswitching properties of various photoactivatable or photoconvertible fluorescent proteins. We have identified mEos2 as a fluorescent protein that exhibits reversible photoswitching under various imaging buffer conditions and present strategies to characterize reversible photoswitching. Finally, we discuss opportunities to combine fluorescent proteins with organic fluorophores for dual-color photoswitching microscopy. KW - Photoactivated localization microscopy KW - Fusion proteins KW - Molecules KW - Patterns KW - Switch KW - Limit KW - Time KW - photoswitchable organic fluorophores KW - fluorescent proteins KW - super-resolution KW - PALM KW - dSTORM Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-134080 VL - 16 IS - 4 ER - TY - THES A1 - Eschbach, Claire T1 - Classical and operant learning in the larvae of Drosophila melanogaster T1 - Klassiches und operantes Lernen bei Larven der Drosophila melanogaster N2 - In dieser Doktorarbeit studiere ich einige psychologische Aspekte im Verhalten der Drosophila, insbesondere von Drosophila Larven. Nach einer Einleitung, in der ich den wissenschaftlichen Kontext darstelle und die Mechanismen der olfaktorischen Wahrnehmung sowie des klassichen und operanten Lernens beschreibe, stelle ich die verschiedenen Experimente meiner Doktorarbeit vor. Wahrnehmung Das zweite Kapitel behandelt die Art, in der adulte Drosophila zwischen Einzeldüften und Duftgemischen generaliseren. Ich habe gefunden, daß die Fliegen eine Mischung aus zwei Düften als gleich verschieden von ihren beiden Elementen wahrnehmen; und daß die Intensität sowie die chemisch-physikalische Natur der Elemente das Ausmass der Generalisierung zwischen der Mischung und ihren beiden Elementen beeinflusst. Diese Entdeckungen sollten für die weitere Forschung anregend sein, wie zum Beispiel zum functional imaging. Gedächtnis Das dritte Kapitel stellt die Etablierung eines neuen Protokolls zur klassischen Konditionierung bei Drosophila Larven dar. Es handelt sich um Experimente, bei denen ein Duft mit einer mechanischen Störung als Strafreiz verknüpft wird. Das Protokoll wird einen Vergleich zwischen zwei Arten vom aversiven Gedächtnissen (Geschmack vs. mechanische Störung als Strafreize) ermöglichen, einschliesslich eines Vergleiches ihrer neurogenetischen Grundlagen; zudem kann nun geforscht werden, ob die jeweiligen Gedächtnisse spezifisch für die Art des verwendeten Strafreizes sind. Selbstgestaltung Das vierte Kapitel umfasst unsere Versuche, operantes Gedächtnis bei Drosophila Larven zu beobachten. Zumindest für die unmittelbar ersten Momente des Tests konnte ich zeigen, dass die Larven ihr Verhalten entsprechend dem Training ausrichten. Dieses Gedächtnis scheint jedoch im Laufe des Tests schnell zu verschwinden. Es ist daher geraten, diese Ergebnisse über operantes Lernen zu wiederholen, eventuell das experimentelle Protokoll zu verbessern, um so eine systematische Analyse der Bedingungen und Mechanismen für das operante Lernen bei der Drosophila Larve zu erlauben. Im fünften Kapitel verwende ich die im Rahmen des vierten Kapitels entwickelten Methoden für eine Analyse der Fortbewegung der Larven. Ich habe insbesondere die Wirkung des pflanzlichen ‚cognitive enhancers’ Rhodiola rosea untersucht, sowie die Auswirkungen von Mutationen in den Genen, welche für Synapsin und SAP47 kodieren; schliesslich habe ich getestet, ob die Geschmacksqualität der Testsituation lokomotorische Parameter verändert. Diese Dissertation erbringt also eine Reihe neuer Aspekte zur Psychologie der Drosophila und wird hoffentlich in diesem Bereich der Forschung neue Wege öffnen. N2 - In this thesis I studied psychological aspects in the behaviour of Drosophila, and especially Drosophila larvae. After an introduction where I present the general scientific context and describe the mechanisms of olfactory perception as well as of classical and operant conditioning, I present the different experiments that I realised during my PhD. Perception The second chapter deals with the way adult Drosophila generalise between single odours and binary mixtures of odours. I found that flies perceive a mixture of two odours as equally similar to the two elements composing it; and that the intensity as well as the physico-chemical nature of the elements composing a mixture affect the degree of generalisation between this mixture and one of its elements. These findings now call for further investigation on the physiological level, using functional imaging. Memory The third chapter presents a series of experiments in Drosophila larvae in order to define some characteristics of a new protocol for classical aversive learning which involves associating odours with mechanical disturbance as a punishment. The protocol and the first results should open new doors for the study of classical conditioning in Drosophila larvae, by allowing the comparison between two types of aversive memory (gustatory vs. mechanical reinforcement), including a comparison of their neurogenetic bases. It will also allow enquiries into the question whether these respective memories are specific for the kind of reinforcer used. Agency The fourth chapter documents our attempts to establish operant memory in Drosophila larvae. By analysing the first moments of the test, I could reveal that the larvae modified their behaviour according to their previous operant training. However, this memory seems to be quickly extinguished during the course of the test. We now aim at repeating these results and improving the protocol, in order to be able to systematically study the mechanisms allowing and underlying operant learning in Drosophila larvae. In the fifth chapter, I use the methods developed in chapter four for an analysis of larval locomotion. I determine whether larval locomotion in terms of speed or angular speed is affected by a treatment with the “cognitive enhancer” Rhodiola rosea, or by mutations in the Synapsin or SAP47 genes which are involved in the formation of olfactory memory. I also characterize the modifications induced by the presence of gustatory stimuli in the substrate on which the larvae are crawling. This thesis thus brings new elements to the current knowledge of Drosophila KW - Lernen KW - Taufliege KW - Neurobiologie KW - Drosophila KW - learning KW - Drosophila KW - neurobiology KW - behaviour Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-70583 ER - TY - THES A1 - Adamek, Julian T1 - Classical and Quantum Aspects of Anisotropic Cosmology T1 - Klassische und Quantentheoretische Gesichtspunkte der Anisotropen Kosmologie N2 - The idea that our observable Universe may have originated from a quantum tunneling event out of an eternally inflating false vacuum state is a cornerstone of the multiverse paradigm. Modern theories that are considered as an approach towards the ultraviolet-complete fundamental theory of particles and gravity, such as the various types of string theory, even suggest that a vast landscape of different vacuum configurations exists, and that gravitational tunneling is an important mechanism with which the Universe can explore this landscape. The tunneling scenario also presents a unique framework to address the initial conditions of our observable Universe. In particular, it allows to introduce deviations from the cosmological concordance model in a controlled and well-motivated way. These deviations are a central topic of this work. An important feature in most of the theories mentioned above is the presumed existence of additional space dimensions in excess of the three which we observe in our every-day experience. It was realized that these extra dimensions could avoid our detection if they are compactified to microscopic length scales far beyond the reach of current experiments. There also seem to be natural mechanisms available for dynamical compactification in those theories. These typically lead to a vast landscape of different vacuum configurations which also may differ in the number of macroscopic dimensions, only the total number of dimensions being determined by the theory. Transitions between these vacuum configurations may hence open up new directions which were previously compact, spontaneously compactify some previously macroscopic directions, or otherwise re-arrange the configuration of compact and macroscopic dimensions in a more general way. From within the bubble Universe, such a process may be perceived as an anisotropic background spacetime - intuitively, the dimensions which open up may give rise to preferred directions. If our 3+1 dimensional observable Universe was born in a process as described above, one may expect to find traces of a preferred direction in cosmological observations. For instance, two directions could be curved like on a sphere, while the third space direction is flat. Using a scenario of gravitational tunneling to fix the initial conditions, I show how the primordial signatures in such an anisotropic Universe can be obtained in principle and work out a particular example in more detail. A small deviation from isotropy also has phenomenological consequences for the later evolution of the Universe. I discuss the most important effects and show that backreaction can be dynamically important. In particular, under certain conditions, a buildup of anisotropic stress in different components of the cosmic fluid can lead to a dynamical isotropization of the total stress-energy tensor. The mechanism is again demonstrated with the help of a physical example. N2 - Die Vorstellung von einem Multiversum baut unter anderem auf dem Gedanken auf, dass unser beobachtbares Universum in einem Tunnelprozess entstanden sein könnte. Demzufolge hätte es sich dabei von einem ewig währenden, inflationären Vakuumzustand abgekoppelt. Die so entstehende Blase gleicht einer bewohnbaren Insel inmitten eines gewaltigen Ozeans. Moderne Theorien, die als gute Ansätze bezüglich einer fundamentalen und ultraviolett-vollständigen Beschreibung von Elementarteilchen und Gravitation angesehen werden, wie etwa die verschiedenen Ausprägungen der Stringtheorie, legen sogar nahe, dass eine ganze "Landschaft" (im Englischen "landscape") verschiedener Vakuumzustände existiert, und dass Tunnelprozesse einen wichtigen Mechanismus darstellen, mit dem das Universum die Vielzahl an Möglichkeiten erforschen und realisieren kann. Das Tunnelszenario stellt auch einen einzigartigen Rahmen zur Verfügung, um die Anfangsbedingungen unseres beobachtbaren Universums zu untersuchen. Insbesondere besteht damit die Möglichkeit, geringfügige Abweichungen vom kosmologischen Standardmodell in kontrollierter und gut motivierter Art und Weise zu realisieren. Solche Abweichungen stellen eines der zentralen Themen dieser Arbeit dar. Eine wichtige Besonderheit der eben erwähnten Theorien ist die Annahme, dass neben den drei uns bekannten Raumdimensionen eine Vielzahl weiterer existieren könnte. Diese Zusatzdimensionen könnten vor uns verborgen sein, wenn sie kompakt sind und nur extrem mikroskopische Ausmaße haben, so dass sie sich weit unterhalb des Auflösungsvermögens heutiger Experimente befinden. Mechanismen, welche eine solche mikroskopische Gestalt dynamisch erklären könnten, sind in den gängigen Theorien auf ganz natürliche Weise verfügbar. Typischerweise ergibt sich daraus das eben gezeichnete Bild einer ausgedehnten "Landschaft" verschiedener Konfigurationen. Die Vakuumzustände können sich nun auch in der Anzahl und Gestalt der mikroskopischen Dimensionen unterscheiden, da nur die Gesamtzahl an Raumdimensionen von der Theorie vorgegeben wird. Übergänge zwischen diesen Zuständen können also dazu führen, dass neue Raumrichtungen entstehen, indem mikroskopische Dimensionen sich plötzlich aufblähen, alte Raumrichtungen verschwinden, indem sie sich spontan ins Mikroskopische zusammenziehen, oder dass die Konfiguration der Raumdimensionen auf eine noch kompliziertere Art und Weise verändert wird. Aus Sicht des neu entstehenden "Universums" in der Blase führt ein solcher Prozess effektiv zu einem anisotropen Hintergrund - vereinfacht ausgedrückt können die neu entstehenden Raumrichtungen eine Vorzugsrichtung ausweisen. Wenn unser 3+1 dimensionales beobachtbares Universum in einem solchen Prozess entstanden ist, kann man vermuten, dass sich in kosmologischen Beobachtungen Hinweise auf eine Vorzugsrichtung finden lassen müssten. Zum Beispiel könnten zwei Raumrichtungen gekrümmt wie eine Kugeloberfläche sein, während die dritte Richtung keinerlei Krümmung aufweist. Indem ich ein Tunnelszenario benutze, um die Anfangsbedingungen festzulegen, gelingt es mir zu zeigen wie die primordialen Spuren eines solchen anisotropen Universums prinzipiell auszusehen haben und führe eine Berechnung anhand eines speziellen Beispiels explizit vor. Eine geringfügige Abweichung von Isotropie hat ebenfalls phänomenologische Auswirkungen auf die spätere Entwicklung des Universums. Ich gehe auf die wichtigsten Effekte ein und zeige außerdem, dass Rückkopplung dynamisch relevant sein kann. Insbesondere kann sich unter gewissen Voraussetzungen ein Ungleichgewicht der Druckkräfte in verschiedenen Komponenten der "kosmischen Flüssigkeit" aufbauen, das insgesamt zu einer dynamischen Isotropisierung des kollektiven Energie-Impuls-Tensors führt. Dieser Mechanismus wird ebenfalls anhand eines konkreten Beispiels beleuchtet. KW - Kosmologie KW - Anisotropes Universum KW - Quantenkosmologie KW - Bianchi-Kosmologie KW - Anisotropic Universe Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-65908 ER - TY - THES A1 - Tran, Nam Binh T1 - Climate change assessment in Southeast Asia and implications for agricultural production in Vietnam T1 - Der Klimawandel : Beurteilung in Südostasien und Implikationen für die landwirtschaftliche Produktion in Vietnam N2 - Seit vielen Jahren ist die Erforschung von Klimawandel und -schwankungen das zentrale Thema der Klimatologie. Besonderes deutlich wird dies anhand der IPCC-Berichte, ebenso wie der zahlreichen Einzelstudien zur Entwicklung des Klimas auf unterschiedlichsten raum-zeitlichen Skalen. Insbesondere seit den 1980er Jahren befassen sich zahlreiche Forschungsgruppen weltweit mit der systematischen Sammlung, Aufbereitung und auch Auswertung von Klimadaten. Diese Datengrundlage erlaubt Analysen zur Entwicklung der globalen Lufttemperatur, des Niederschlags und anderer Klimaelemente (Jones et al., 1986; Hansen und Lebedeff, 1987; Vinnikov et al., 1987, 1990). Das wichtigste übergreifende Ergebnis dieser Untersuchungen ist die Feststellung einer globalen Erwärmung während des 20. Jahrhunderts, die sich in den beiden letzten Jahrzehnten besonders intensivierte. Abschätzungen über die Art und Stärke des Klimawandels auf größeren, planungsrelevanten Massstäben sind jedoch nach wie vor mit großen Unsicherheiten verbunden. Für eine detailliertere Erforschung der Auswirkungen der globalen Erwärmung auf regionaler oder gar lokaler Ebene besteht daher noch großer Forschungsbedarf. In dieser Dissertation wird zu diesem Zweck ein statistischer Ansatz verfolgt. Dieser erlaubt die Identifikation systematischer Unterschiede zwischen den Ausprägungen klimatologischer Feldgrößen (bodennahe Lufttemperatur und Niederschlag) wie sie von sogenannten General Circulation Models (GCMs) simuliert werden im Vergleich zu den betreffenden Parametern aus Beobachtungsdaten. Als Beobachtungsdaten werden die NCEP Reanalysen, die statistisch interpolierten Datensätze der CRU sowie Stationsdaten aus Vietnam verwendet. Hierbei zeigt sich, dass die aktuellen Klimamodelle die räumlichen Muster der betrachteten Variablen in befriedigender Weise reproduzieren. Die Analyse des regionalen Klimawandels in Südost-Asien erfolgt durch die Auswertung von Klimamodellrechnungen. Diese wurden von verschiedenen GCMs durchgeführt, wobei unterschiedliche Annahmen über die zukünftigen Treibhausgasemissionen berücksichtigt wurden. Der Fokus dieser Dissertation ist die Analyse der projizierten zeitlichen Entwicklung von bodennaher Temperatur und Niederschlag im 21. Jahrhundert. Hierbei werden sowohl jährliche als auch saisonale Mittelwerte bzw. Summen berücksichtigt. Neben diesen rein physikalisch-klimatologischen Betrachtungen behandelt diese Dissertation auch einen angewandten Aspekt, nämlich den Impakt des Klimawandels auf die Landwirtschaft, exemplarisch untersucht am Beispiel Vietnams. Für die Abschätzung der Vulnerabilität dieses essentiellen Wirtschaftsbereiches wird ein statistisches Modell entwickelt in das an klimatischen Parametern die bodennahe temperatur sowie der Niederschlag einfliessen. Diese Untersuchung leistet damit einen wichtigen Beitrag zum Wissenstand über die Auswirkungen des Klimawandels in den niederen Breiten. Die sozio-ökonomische Entwicklung jedes Staates der Erde wird von den Folgen des Klimawandels beeinflusst, allerdings variiert der Grad der Beeinträchtigung erheblich. Vermutlich werden Entwicklungsländer wie Vietnam die Auswirkungen des Klimawandels besonders stark zu spüren bekommen. Die Ursachen für diese hohe Vulnerabilität liegen unter anderem in der Wirtschaftsstruktur: der allgemein hohe Stellenwert natürlicher Ressourcen und eine geringe Diversität verringern hier die Möglichkeiten zur Adaption an die beobachteten und projizierten Veränderungen. Die vorliegende Dissertation gliedert sich wie folgt: In Kapitel 1 stellt eine allgemeine Einführung zur Thematik dar. Die Begriffe Klima und Klimawandel sowie einige übliche Modelle zum Klimawandel, verbunden mit einer Abwägung der spezifischen Vor- und Nachteile, werden erläutert. Kapitel 2 beschäftigt sich mit der Methodik. Hier werden die räumliche Interpolation sowie die angewendeten explorativen und inferentiellen statistischen Verfahren diskutiert. Die Kapitel 3 und 4 beschreiben die Datengrundlage und die betrachtete Region. Im Kapitel 5 werden die Untersuchungsergebnisse dargelegt. In Kapitel 6 erfolgt die Abschlussbetrachtung und ein Ausblick auf die Zukunft. Am Ende der Dissertation finden sich die verwendeten Quellen sowie ein Appendix mit landwirtschaftlichen Daten. N2 - For many years, the study of climatic changes and variations has become the main objective of climatic research, as has been appreciated in the IPCC's reports and several publications regarding climatic evolution on different space-time scales. Since the 80's, many research groups have generated the extensive database from which the analysis of temperature, precipitation and other climatic parameters has been performed on a global scale (Jones et al., 1986; Hansen and Lebedeff, 1987, 1988; Vinnikov et al., 1987, 1990). The most important result of these research projects is the evidence of global warming during the 20th century, especially in the last two decades. However, numerous challenges still exist about the structure and dimension of the climatic change on a considerable scale. Therefore, it is necessary to carry out studies on a local and regional scale that allow for a more precise evaluation of the global warming phenomenon. A statistical analysis approach was developed to identify systematic differences between large-scale climatic variable from the General Circulation Models (GCM), NCEP, CRU re-analysis data set and climatic parameters (temperature and precipitation data). Models are able to satisfactorily reproduce the spatial patterns of the regional temperature and precipitation field. The response of the climate system to various emission scenario simulated by the GCM was used to analyze and predict the local climate change. The main objective of this study is to analysis the time evolution of the annual and seasonal temperature and precipitation during the 21st century and in order to contribute to our knowledge of temperature and precipitation trends over the century on a regional scale, not only in Southeast Asia but also in Vietnam; the study focuses to develop a dynamical – statistical model describing the relationship between the major climate variation and agricultural production in Vietnam. This study will be an important contribution to the present-day assessment of climate change impacts in the low latitudes. Regional scenarios of climate change, including both rainfall and mean temperature were then used to assess the impact of climate change on crop production in the region in order to evaluate the vulnerability of the system to global warming. Climate change has adverse impacts on the socio - economic development of all nations. But the degree of the impact will vary across nations. It is expected that changes in the earth's climate will impact on developing countries like Vietnam, in particular, hardest because their economies are strongly dependent on crude forms of natural resources and their economic structure is less flexible to adjust to such drastic changes. In Chapter 1: Introduction and background I describe in general terms climate, climate change, climate change model with benefits and problems. Chapter 2: methodology discusses the methods including interpolation, validation, clustering, correlation and regression which were applied in the study. Chapter 3 and chapter 4 describe the database and study area. The most important is chapter 5 Results. The last is chapter 6 Conclusion and outlook followed by the reference list and an appendix. KW - Klimaänderung KW - Südostasien KW - agrarwirtschaftliche Produktion KW - Vietnam KW - agricultural production KW - climate change Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-64570 ER - TY - JOUR A1 - Reiners, Christoph T1 - Clinical Experiences with Radiation Induced Thyroid Cancer after Chernobyl N2 - The risk of developing thyroid cancer increases considerably after exposure to external or internal radiation, especially in children below the age of 10. After the Chernobyl reactor accident, the yearly incidence of childhood thyroid cancer in Belarus increased to approximately 40 per 1.000.000 in girls and to roughly 20 per 1.000.000 in boys compared to approximately 0.5 cases per 1.000.000 prior to the accident. Typically, young children with thyroid cancer after radiation exposure present in ≈95% of the cases as papillary cancers, in ≈50% as invasive tumors growing outside the thyroid capsule, in ≈65% with lymph node metastases and in ≈15% with distant metastases. A joint Belarusian-German project starting in April 1993 that combined treatment with surgery and radioiodine was organized in 237 selected children from Belarus who were exposed to the Chernobyl fallout and had advanced stages of thyroid cancer. The study group included 141 girls and 96 boys. Their median age at the time of the accident was 1.7 years; whereas the median age at the time of diagnosis was 12.4 years. With the exception of two cases with follicular histology, the majority of the patients had been diagnosed with papillary thyroid cancers. In 63%, the tumor had grown outside the thyroid capsule and invaded the tissue of the neck (pT4). Nearly all of the selected cases (96%) showed-up with lymph node metastases (pN1) and 43% of the patients with distant metastases mainly to the lungs (pM1). In 58% of the children, complete remissions of thyroid cancer could be achieved until December 31st 2010 and in 34% of the children, stable partial remissions; in the remaining 8% of the patients, partial remissions were observed. The risk of radiation-induced thyroid cancer increased considerably in children and adolescents who were affected by the Chernobyl reactor accident. In spite of the fact, that thyroid cancers in young children seem to behave more aggressively than in older patients, the results of combined treatment with thyroidectomy, radioiodine therapy and thyroid hormone replacement are excellent. KW - Chernobyl KW - Chernobyl KW - children KW - thyroid cancer KW - advanced stages KW - treatment KW - prognosis Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-75475 ER - TY - JOUR A1 - Guckenberger, Matthias A1 - Sweeney, Reinhart A. A1 - Flickinger, John C. A1 - Gerszten, Peter C. A1 - Kersh, Ronald A1 - Sheehan, Jason A1 - Sahgal, Arjun T1 - Clinical practice of image-guided spine radiosurgery - results from an international research consortium JF - Radiation Oncology N2 - Background Spinal radiosurgery is a quickly evolving technique in the radiotherapy and neurosurgical communities. However, the methods of spine radiosurgery have not been standardized. This article describes the results of a survey about the methods of spine radiosurgery at five international institutions. Methods All institutions are members of the Elekta Spine Radiosurgery Research Consortium and have a dedicated research and clinical focus on image-guided radiosurgery. The questionnaire consisted of 75 items covering all major steps of spine radiosurgery. Results Strong agreement in the methods of spine radiosurgery was observed. In particular, similarities were observed with safety and quality assurance playing an important role in the methods of all institutions, cooperation between neurosurgeons and radiation oncologists in case selection, dedicated imaging for target- and organ-at-risk delineation, application of proper safety margins for the target volume and organs-at-risk, conformal planning and precise image-guided treatment delivery, and close clinical and radiological follow-up. In contrast, three major areas of uncertainty and disagreement were identified: 1) Indications and contra-indications for spine radiosurgery; 2) treatment dose and fractionation and 3) tolerance dose of the spinal cord. Conclusions Results of this study reflect the current practice of spine radiosurgery in large academic centers. Despite close agreement was observed in many steps of spine radiosurgery, further research in form of retrospective and especially prospective studies is required to refine the details of spinal radiosurgery in terms of safety and efficacy. KW - vertebral metastases KW - spine radiosurgery KW - methods KW - questionnaire Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-138006 VL - 6 IS - 172 ER - TY - JOUR A1 - Melfsen, Siebke A1 - Kühnemund, Martina A1 - Schwieger, Judith A1 - Warnke, Andreas A1 - Stadler, Christina A1 - Poustka, Fritz A1 - Stangier, Ulrich T1 - Cognitive behavioral therapy of socially phobic children focusing on cognition: a randomised wait-list control study N2 - Background: Although literature provides support for cognitive behavioral therapy (CBT) as an efficacious intervention for social phobia, more research is needed to improve treatments for children. Methods: Forty four Caucasian children (ages 8-14) meeting diagnostic criteria of social phobia according to the Diagnostic and Statistical Manual of Mental Disorders (4th ed.; APA, 1994) were randomly allocated to either a newly developed CBT program focusing on cognition according to the model of Clark and Wells (n = 21) or a wait-list control group (n = 23). The primary outcome measure was clinical improvement. Secondary outcomes included improvements in anxiety coping, dysfunctional cognitions, interaction frequency and comorbid symptoms. Outcome measures included child report and clinican completed measures as well as a diagnostic interview. Results: Significant differences between treatment participants (4 dropouts) and controls (2 dropouts) were observed at post test on the German version of the Social Phobia and Anxiety Inventory for Children. Furthermore, in the treatment group, significantly more children were free of diagnosis than in wait-list group at post-test. Additional child completed and clinician completed measures support the results. Discussion: The study is a first step towards investigating whether CBT focusing on cognition is efficacious in treating children with social phobia. Future research will need to compare this treatment to an active treatment group. There remain the questions of whether the effect of the treatment is specific to the disorder and whether the underlying theoretical model is adequate. Conclusion: Preliminary support is provided for the efficacy of the cognitive behavioral treatment focusing on cognition in socially phobic children. Active comparators should be established with other evidence-based CBT programs for anxiety disorders, which differ significantly in their dosage and type of cognitive interventions from those of the manual under evaluation (e.g. Coping Cat). KW - Verhaltenstherapie Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-68747 ER - TY - CHAP A1 - Förstner, Konrad A1 - Hagedorn, Gregor A1 - Koltzenburg, Claudia A1 - Kubke, Fabiana A1 - Mietchen, Daniel T1 - Collaborative platforms for streamlining workflows in Open Science T2 - Proceedings of the 6th Open Knowledge Conference N2 - Despite the internet's dynamic and collaborative nature, scientists continue to produce grant proposals, lab notebooks, data files, conclusions etc. that stay in static formats or are not published online and therefore not always easily accessible to the interested public. Because of limited adoption of tools that seamlessly integrate all aspects of a research project (conception, data generation, data evaluation, peerreviewing and publishing of conclusions), much effort is later spent on reproducing or reformatting individual entities before they can be repurposed independently or as parts of articles. We propose that workflows - performed both individually and collaboratively - could potentially become more efficient if all steps of the research cycle were coherently represented online and the underlying data were formatted, annotated and licensed for reuse. Such a system would accelerate the process of taking projects from conception to publication stages and allow for continuous updating of the data sets and their interpretation as well as their integration into other independent projects. A major advantage of such work ows is the increased transparency, both with respect to the scientific process as to the contribution of each participant. The latter point is important from a perspective of motivation, as it enables the allocation of reputation, which creates incentives for scientists to contribute to projects. Such work ow platforms offering possibilities to fine-tune the accessibility of their content could gradually pave the path from the current static mode of research presentation into a more coherent practice of open science. KW - Open Science KW - Virtual Research Environment KW - collaboratories KW - workflow platform KW - automation Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-101678 ER - TY - THES A1 - Batzilla, Julia T1 - Complete genome sequence of Yersinia enterocolitica subspecies palearctica serotype O:3: Identification of novel virulence-associated genes and evolutionary aspects T1 - Die komplette Genomsequenz von Yersinia enterocolitica Subspezies palearctica Serotyp O:3: Identifikation neuer Virulenz-assoziierter Gene und evolutionäre Aspekte N2 - Yersinia enterocolitica subsp. palearctica Serobiotyp O:3/4 ist verantwortlich für 80-90 % aller Yersiniosen beim Menschen in Deutschland und Europa. Y. enterocolitica Infektionen zeigen vielfältige Krankheitsbilder wie Gastroenteritis, Lymphadenitis und verschiedene Spätkomplikationen wie reaktive Arthritis. Das wichtigste Tierreservoir stellt das Hausschwein dar. Rohes Schweinefleisch in Metzgereien in Deutschland und anderen Regionen in Nord-Ost Europa ist häufig mit Yersinien kontaminiert (Bayern: 25 %). Da sich Serobiotyp O:3/4-Stämme geografisch und phylogenetisch deutlich von dem bisher sequenzierten Serobiotyp O:8/1B Stamm 8081 unterscheiden, wurde eine komplette Genomsequenzierung des europäischen Serobiotyp O:3/4 DSMZ Referenzstammes Y11 (aus Patientenstuhl isoliert) durchgeführt. Um einen genaueren Einblick in die Y. enterocolitica subsp. palearctica Gruppe zu erhalten, wurden zusätzlich zwei weitere Serobiotyp O:3/4 Isolate (Stamm Y8265, Patientenisolat, und Stamm Y5307, mit reaktiver Arthritis assoziiertes Patientenisolat), sowie ein eng verwandtes Y. enterocolitica subsp. palearctica Serobiotyp O:5,27/3 Isolat, Stamm Y527P, und zwei Biotyp 1A Isolate (ein Isolat nosokomialer Herkunft (Serogruppe O:5) und ein Umwelt-Isolat (O:36)) unvollständig sequenziert. Die nicht mausvirulenten Stämme wurden mit dem mausvirulenten Y. enterocolitica subsp. enterocolitica Serobiotyp O:8/1B Stamm 8081 verglichen, um genetische Besonderheiten von Stamm Y11 und der Y. enterocolitica subsp. palearctica Gruppe zu identifizieren. Besonderer Fokus lag hierbei auf dem pathogenen Potential von Stamm Y11, um neue potentielle Virulenz Faktoren und Fitnessfaktoren zu identifizieren, darunter vor allem solche, die eine Rolle bei der Wirtsspezifität von Serobiotyp O:3/4 spielen könnten. Y. enterocolitica subsp. palearctica Serobiotyp O:3/4 Stämmen fehlen einige der Charakteristika der mausvirulenten Gruppe Y. enterocolitica subsp. enterocolitica, beispielsweise die Yersiniabactin kodierende‚ High-Pathogenicity Island (HPI), das Yts1 Typ 2 Sekretionssystem und das Ysa Typ 3 Sekretionssystem. Die Serobiotyp O:3/4-Stämme haben ein anderes Repertoir von Virulenz Faktoren erworben, darunter Gene bzw. genomische Inseln für das Ysp Typ 3 Sekretionssystem, Rtx-ähnliches putatives Toxin, Insektizid-Toxine und ein funktionelles PTS System für die Aufnahme von N-acetyl-galactosamin, dem aga-Operon. Nach dem Transfer des aga-Operons in Y. enterocolitica subsp. enterocolitica O:8/1B konnte Wachstum auf N-acetyl-galactosamin festgestellt werden. Neben diesen Genen können möglicherweise auch zwei Prophagen (PhiYep-2 und PhiYep-3) und eine asn tRNA assoziierte genomische Insel (GIYep-01) zur Pathoadaptation von Y. enterocolitica subsp. palearctica Serobiotyp O:3/4 beitragen. Der PhiYep-3 Prophage und die GIYep-01 Insel weisen Rekombinationsaktivität auf, und PhiYep-3 wurde nicht in allen untersuchten Serobiotyp O:3/4 Stämmen gefunden. Y. enterocolitica subsp. palearctica Serobiotyp O:5,27/3 Stamm Y527P ist genetisch eng verwandt zu allen Serobiotyp O:3/4 Isolaten, wohingegen die Biotyp 1A Isolate ein mehr Mosaik-artiges Genom aufweisen und potentielle Virulenzgene sowohl mit Serobiotyp O:8/1B als auch O:3/4 gemeinsam haben, was einen gemeinsamen Vorfahren impliziert. Neben dem pYV Virulenz-Plasmid fehlen den Biotyp 1A Isolaten klassische Virulenzmarker wie das Ail Adhesin, das YstA Enterotoxin und das Virulenz-assoziierte Protein C (VapC). Interessanterweise gibt es keine beträchtlichen Unterschiede zwischen den bekannten Virulenzfaktoren des nosokomialen Isolats und dem Umweltisolat der Biotyp 1A-Gruppe, abgesehen von einem verkürzten Rtx Toxin-ähnlichem Genkluster und Überresten eines P2-ähnlichen Phagen im Krankenhausisolat der Serogruppe O:5. N2 - Yersinia enterocolitica subsp. palearctica serobiotype O:3/4 comprises about 80-90 % of all human patient isolates in Germany and Europe and is responsible for sporadic cases worldwide. Even though this serobiotype is low pathogenic, Y. enterocolitica subsp. palearctica serobiotype O:3/4 is involved in gastroenteritis, lymphadenitis and various extraintestinal sequelae as reactive arthritis. The main animal reservoir of this serobiotype are pigs, causing a high rate of O:3/4 contaminations of raw pork in butcher shops in Germany (e.g. Bavaria 25 %) and countries in north-east Europe. As Y. enterocolitica O:3/4 is geographically and phylogenetically distinct from the so far sequenced mouse-virulent O:8/1B strain, complete genome sequencing has been performed for the European serobiotype O:3/4 DSMZ reference strain Y11, which has been isolated from a patient stool. To gain greater insight into the Y. enterocolitica subspecies palearctica group, also draft genome sequences of two other human O:3/4 isolates (strains Y8265, patient isolate, and Y5307, patient isolate associated with reactive arthritis), a closely related Y. enterocolitica palearctica serobiotype O:5,27/3 (strain Y527P), and two biotype 1A strains (a nosocomial strain of serogroup O:5 and an environmental serogroup O:36 isolate) have been performed. Those strains were compared to the high-pathogenic Y. enterocolitica subsp. enterocolitica serobiotype O:8/1B strain 8081 to address the peculiarities of the strain Y11 and the Y. enterocolitica subspecies palearctica group. The main focus was to unravel the pathogenic potential of strain Y11 and thus to identify novel putative virulence genes and fitness factors, especially those that may constitute host specificity of serobiotype O:3/4. Y. enterocolitica subspecies palearctica serobiotype O:3/4 strains lack most of the mouse-virulence-associated determinants of Y. enterocolitica subsp. enterocolitica serotype O:8, for example the HPI, Yts1 type 2 and Ysa type three secretion systems. In comparison, serobiotype O:3/4 strains obviously acquired a different set of genes and genomic islands for virulence and fitness such as the Ysp type three secretion system, an RtxA-like putative toxin, insecticidal toxins and a functional PTS system for N-acetyl-galactosamine uptake, named aga-operon. The aga-operon is able to support the growth of the Y. enterocolitica subsp. enterocolitica O:8/1B on N-acetyl-galactosamine after transformation with the aga operon. Besides these genes, also two prophages, PhiYep-2 and PhiYep-3, and a asn tRNA-associated GIYep-01 genomic island might influence the Y. enterocolitica subsp. palearctica serobiotype O:3/4 pathoadaptation. The PhiYep-3 prophage and the GIYep-01 island show recombination activity and PhiYep-3 was not found in all O:3/4 strains of a small strain collection tested. Y. enterocolitica subsp. palearctica serobiotype O:5,27/3 strain Y527P was found to be closely related to all serobiotype O:3/4 strains, whereas the biotype 1A isolates have more mosaic-segmented genomes and share putative virulence genes both with serobiotypes O:8/1B and O:3/4, which implies their common descent. Besides the pYV virulence plasmid, biotype 1A strains lack classical virulence markers as the Ail adhesin, the YstA enterotoxin, and the virulence-associated protein C. Interestingly, there are no notable differences between the known virulence factors present in nosocomial and environmental strains, except the presence of a truncated Rtx toxin-like gene cluster and remnants of a P2-like prophage in the hospital serogroup O:5 isolate. KW - Genanalyse KW - Yersinia enterocolitica KW - Genomsequenzierung KW - Genome Sequencing Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-69668 N1 - Die praktische Durchführung der Arbeit wurde durch Hernn Prof. Dr. Dr. J. Heesemann am Max von Pettenkofer-Institut in München betreut. ER - TY - JOUR A1 - Pillai, Deepu R. A1 - Heidemann, Robin M. A1 - Kumar, Praveen A1 - Shanbhag, Nagesh A1 - Lanz, Titus A1 - Dittmar, Michael S. A1 - Sandner, Beatrice A1 - Beier, Christoph P. A1 - Weidner, Norbert A1 - Greenlee, Mark W. A1 - Schuierer, Gerhard A1 - Bogdahn, Ulrich A1 - Schlachetzki, Felix T1 - Comprehensive Small Animal Imaging Strategies on a Clinical 3 T Dedicated Head MR-Scanner; Adapted Methods and Sequence Protocols in CNS Pathologies JF - PLoS ONE N2 - Background: Small animal models of human diseases are an indispensable aspect of pre-clinical research. Being dynamic, most pathologies demand extensive longitudinal monitoring to understand disease mechanisms, drug efficacy and side effects. These considerations often demand the concomitant development of monitoring systems with sufficient temporal and spatial resolution. Methodology and Results: This study attempts to configure and optimize a clinical 3 Tesla magnetic resonance scanner to facilitate imaging of small animal central nervous system pathologies. The hardware of the scanner was complemented by a custom-built, 4-channel phased array coil system. Extensive modification of standard sequence protocols was carried out based on tissue relaxometric calculations. Proton density differences between the gray and white matter of the rodent spinal cord along with transverse relaxation due to magnetic susceptibility differences at the cortex and striatum of both rats and mice demonstrated statistically significant differences. The employed parallel imaging reconstruction algorithms had distinct properties dependent on the sequence type and in the presence of the contrast agent. The attempt to morphologically phenotype a normal healthy rat brain in multiple planes delineated a number of anatomical regions, and all the clinically relevant sequels following acute cerebral ischemia could be adequately characterized. Changes in blood-brain-barrier permeability following ischemia-reperfusion were also apparent at a later time. Typical characteristics of intracerebral haemorrhage at acute and chronic stages were also visualized up to one month. Two models of rodent spinal cord injury were adequately characterized and closely mimicked the results of histological studies. In the employed rodent animal handling system a mouse model of glioblastoma was also studied with unequivocal results. Conclusions: The implemented customizations including extensive sequence protocol modifications resulted in images of high diagnostic quality. These results prove that lack of dedicated animal scanners shouldn't discourage conventional small animal imaging studies. KW - Rat spinal-cord KW - Middle cerebral-artery KW - Blood-brain-barrier KW - Experimental intracerebral hemorrhage KW - Partially parallel acquisitions KW - Magnetic-resonance microscopy KW - IN-VIVO KW - Mouse-brain KW - Edema formation KW - White-matter Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-134193 VL - 6 IS - 2 ER - TY - INPR A1 - Nassourou, Mohamadou T1 - Computer-based Textual Documents Collation System for Reconstructing the Original Text from Automatically Identified Base Text and Ranked Witnesses N2 - Given a collection of diverging documents about some lost original text, any person interested in the text would try reconstructing it from the diverging documents. Whether it is eclecticism, stemmatics, or copy-text, one is expected to explicitly or indirectly select one of the documents as a starting point or as a base text, which could be emended through comparison with remaining documents, so that a text that could be designated as the original document is generated. Unfortunately the process of giving priority to one of the documents also known as witnesses is a subjective approach. In fact even Cladistics, which could be considered as a computer-based approach of implementing stemmatics, does not present or recommend users to select a certain witness as a starting point for the process of reconstructing the original document. In this study, a computational method using a rule-based Bayesian classifier is used, to assist text scholars in their attempts of reconstructing a non-existing document from some available witnesses. The method developed in this study consists of selecting a base text successively and collating it with remaining documents. Each completed collation cycle stores the selected base text and its closest witness, along with a weighted score of their similarities and differences. At the end of the collation process, a witness selected more often by majority of base texts is considered as the probable base text of the collection. Witnesses’ scores are weighted using a weighting system, based on effects of types of textual modifications on the process of reconstructing original documents. Users have the possibility to select between baseless and base text collation. If a base text is selected, the task is reduced to ranking the witnesses with respect to the base text, otherwise a base text as well as ranking of the witnesses with respect to the base text are computed and displayed on a bar diagram. Additionally this study includes a recursive algorithm for automatically reconstructing the original text from the identified base text and ranked witnesses. KW - Textvergleich KW - Text Mining KW - Textual document collation KW - Base text KW - Reconstruction of original text KW - Gothenburg model KW - Bayesian classifier KW - Textual alterations weighting system Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-65749 ER - TY - INPR A1 - Nassourou, Mohamadou T1 - Computing Generic Causes of Revelation of the Quranic Verses Using Machine Learning Techniques N2 - Because many verses of the holy Quran are similar, there is high probability that, similar verses addressing same issues share same generic causes of revelation. In this study, machine learning techniques have been employed in order to automatically derive causes of revelation of Quranic verses. The derivation of the causes of revelation is viewed as a classification problem. Initially the categories are based on the verses with known causes of revelation, and the testing set consists of the remaining verses. Based on a computed threshold value, a naïve Bayesian classifier is used to categorize some verses. After that, using a decision tree classifier the remaining uncategorized verses are separated into verses that contain indicators (resultative connectors, causative expressions…), and those that do not. As for those verses having indicators, each one is segmented into its constituent clauses by identification of the linking indicators. Then a dominant clause is extracted and considered either as the cause of revelation, or post-processed by adding or subtracting some terms to form a causal clause that constitutes the cause of revelation. Concerning remaining unclassified verses without indicators, a naive Bayesian classifier is again used to assign each one of them to one of the existing classes based on features and topics similarity. As for verses that could not be classified so far, manual classification was made by considering each verse as a category on its own. The result obtained in this study is encouraging, and shows that automatic derivation of Quranic verses’ generic causes of revelation is achievable, and reasonably reliable for understanding and implementing the teachings of the Quran. KW - Text Mining KW - Koran KW - Text mining KW - Statistical classifiers KW - Text segmentation KW - Causes of revelation KW - Quran Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-66083 ER - TY - JOUR A1 - Ceteci, Fatih A1 - Xu, Jiajia A1 - Ceteci, Semra A1 - Zanucco, Emanuele A1 - Thakur, Chitra A1 - Rapp, Ulf R. T1 - Conditional Expression of Oncogenic C-RAF in Mouse Pulmonary Epithelial Cells Reveals Differential Tumorigenesis and Induction of Autophagy Leading to Tumor Regression JF - Neoplasia N2 - Here we describe a novel conditional mouse lung tumor model for investigation of the pathogenesis of human lung cancer. On the basis of the frequent involvement of the Ras-RAF-MEK-ERK signaling pathway in human non-small cell lung carcinoma (NSCLC), we have explored the target cell availability, reversibility, and cell type specificity of transformation by oncogenic C-RAF. Targeting expression to alveolar type II cells or to Clara cells, the two likely precursors of human NSCLC, revealed differential tumorigenicity between these cells. Whereas expression of oncogenic C-RAF in alveolar type II cells readily induced multifocal macroscopic lung tumors independent of the developmental state, few tumors with type II pneumocytes features and incomplete penetrance were found when targeted to Clara cells. Induced tumors did not progress and were strictly dependent on the initiating oncogene. Deinduction of mice resulted in tumor regression due to autophagy rather than apoptosis. Induction of autophagic cell death in regressing lung tumors suggests the use of autophagy enhancers as a treatment choice for patients with NSCLC. KW - Human lung-cancer KW - K-RAS KW - Induced senescence KW - Gene-expression KW - In-vivo KW - Kinase pathway KW - P53 KW - Activation KW - Model KW - Adenocarcinomas Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-134347 VL - 13 IS - 11 ER - TY - JOUR A1 - Edelmann, Frank A1 - Stahrenberg, Raoul A1 - Gelbrich, Götz A1 - Durstewitz, Kathleen A1 - Angermann, Christiane E. A1 - Düngen, Hans-Dirk A1 - Scheffold, Thomas A1 - Zugck, Christian A1 - Maisch, Bernhard A1 - Regitz-Zagrosek, Vera A1 - Hasenfuß, Gerd A1 - Pieske, Burkert M. A1 - Wachter, Rolf T1 - Contribution of comorbidities to functional impairment is higher in heart failure with preserved than with reduced ejection fraction JF - Clinical Research in Cardiology N2 - Background Comorbidities negatively affect prognosis more strongly in heart failure with preserved (HFpEF) than with reduced (HFrEF) ejection fraction. Their comparative impact on physical impairment in HFpEF and HFrEF has not been evaluated so far. Methods and results The frequency of 12 comorbidities and their impact on NYHA class and SF-36 physical functioning score (SF-36 PF) were evaluated in 1,294 patients with HFpEF and 2,785 with HFrEF. HFpEF patients had lower NYHA class (2.0 ± 0.6 vs. 2.4 ± 0.6, p < 0.001) and higher SF-36 PF score (54.4 ± 28.3 vs. 54.4 ± 27.7, p < 0.001). All comorbidities were significantly (p < 0.05) more frequent in HFrEF, except hypertension and obesity, which were more frequent in HFpEF (p < 0.001). Adjusting for age and gender, COPD, anemia, hyperuricemia, atrial fibrillation, renal dysfunction, cerebrovascular disease and diabetes had a similar (p for interaction > 0.05) negative effect in both groups. Obesity, coronary artery disease and peripheral arterial occlusive disease exerted a significantly (p < 0.05) more adverse effect in HFpEF, while hypertension and hyperlipidemia were associated with fewer (p < 0.05) symptoms in HFrEF only. The total impact of comorbidities on NYHA (AUC for prediction of NYHA III/IV vs. I/II) and SF-36 PF (r 2) in multivariate analyses was approximately 1.5-fold higher in HFpEF, and also much stronger than the impact of a 10% decrease in ejection fraction in HFrEF or a 5 mm decrease in left ventricular end-diastolic diameter in HFpEF. Conclusion The impact of comorbidities on physical impairment is higher in HFpEF than in HFrEF. This should be considered in the differential diagnosis and in the treatment of patients with HFpEF. KW - Heart failure with preserved ejection fraction KW - Heart failure with reduced ejection fraction KW - Comorbidities KW - Physical impairment Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-134354 VL - 100 IS - 9 ER - TY - THES A1 - Issing, Sven T1 - Correlation between Lattice Dynamics and Magnetism in the Multiferroic Manganites T1 - Korrelation von Kristallgitterdynamik und Magnetismus in den Multiferroischen Manganaten N2 - In this thesis a systematic analysis of the correlation effects between lattice dynamics and magnetism in the Multiferroic Manganites RMnO3 with Pnma structure was conducted. For this task, Raman and FT-IR Spectroscopy were employed for an investigation of all optically accessible lattice vibrations, i.e. phonons. To study the correlation effects as well as their specific connections to symmetry and compositional properties of the Multiferroic Manganites, the polarisation and temperature dependence of the phonons were considered explicitly. In combination with lattice dynamical calculations based on Density Functional Theory, two coupling effects - Spin-Phonon Coupling and Electromagnon-Phonon Coupling - were systematically analysed. N2 - Grundlegendes Verständnis der physikalischen Zusammenhänge innerhalb multifunktionaler Materialien im Hinblick auf spätere potentielle Anwendungen ist eines der Hauptziele der heutigen Forschungsbemühungen in der Festkörperphysik. Im Wesentlichen geht es dabei um das Ausnutzen von intrinsischen Kopplungseffekten, um zusätzliche Funktionalität im Vergleich zur heutigen auf Miniaturisierung von halbleiterbasierten Bauelementen aufbauenden Informationstechnologie zu erreichen. Die vorgelegte Dissertation zielt in dies em Themengebiet auf die systematische Untersuchung der Kopplungseffekte zwischen Kristallgitterdynamik und Magnetismus in den multiferroischen Manganaten ab. Konkret geht es um das Modelsystem der multiferroischen Selten-Erd-Manganate RMnO3 mit orthorhombischer Pnma-Struktur. Die zu diesem Zweck verwendeten experimentellen Techniken waren Raman und Fourier-Transform Infrarot (FT-IR) Spektroskopie, mit deren Hilfe alle optisch aktiven Kristallgitterschwingungen dieser Systeme spektroskopiert werden konnten. Zur Untersuchung der Kopplungseffekte wurden die spektroskopischen Experimente polarisationssensitiv und unter Variation der Probentemperatur durchgeführt, um insbesondere Renormalisierungseffekte der Gitterschwingungen im Temperaturbereich magnetischer Phasenübergänge nachweisen zu können. In Verbindung mit gitterdynamischen Rechnungen, die auf der Dichtefunktionaltheorie (DFT) basieren, wurden zwei Kopplungseffekte systematisch untersucht: Spin-Phonon Kopplung (SPC) sowie Elektromagnon-Phonon Kopplung (EMPC). KW - FT-IR-Spektroskopie KW - Multiferroikum KW - Magnetoelektrischer Effekt KW - Manganate KW - Magneto-Elektrischer Effekt KW - Raman-Spektroskopie KW - Manganate KW - Dichtefunktionalformalismus KW - Magneto-Electric Effect KW - Multiferroics Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-66283 ER - TY - THES A1 - Beer, Meike Vanessa T1 - Correlation of ligand density with cell behavior on bioactive hydrogel layers T1 - Korrelation der Ligandendichte mit Zellverhalten auf bioaktivierten Hydrogelschichten N2 - Diese Arbeit beschäftigte sich mit der Quantifizierung von Zelladhäsion vermittelnden Liganden in und auf dünnen Hydrogelschichten, die zur Oberflächenmodifizierung auf Biomaterialien aufgebracht wurden. Das bereits etablierte und gut charakterisierte inerte NCO-sP(EO-stat-PO) Hydrogelsystem, das eine einfache und reproduzierbare Bioaktivierung mit Peptiden erlaubt, wurde als Basis für diese Arbeit verwendet. Diese Hydrogele können auf zwei Weisen funktionalisiert werden. Liganden können entweder mit der Prepolymerlösung vor der Beschichtung gemischt (Einmischmethode) oder frische Hydrogelschichten mit einer Ligandenlösung inkubiert werden (Inkubationsmethode). Der erste Teil dieser in drei Hauptteile unterteilten Arbeit, beschäftigte sich mit der Konzentrationsbestimmung der Liganden in der gesamten Tiefe der Hydrogelschicht, während sich der zweite Teil auf die oberflächensensitive Quantifizierung von Zelladhäsion vermittelnden Molekülen an der biologischen Grenzfläche konzentrierte. Die Ergebnisse wurden mit Zelladhäsionskinetiken verglichen. Der dritte Teil dieser Arbeit beschäftigte sich mit der biochemischen als auch strukturellen Nachahmung der komplexen Extrazellulärmatrix (ECM). Das ECM Protein Fibronektin (FN) wurde über Zucker-Lektin Anbindung präsentiert und Zellverhalten auf diesen biomimetischen Oberflächen untersucht. Ebenfalls wurde Zellverhalten in einer dreidimensionalen Faserumgebung mit identischer Oberflächenchemie wie in den beiden ersten Teilen dieser Arbeit untersucht und mit der Peptidkonzentration korreliert. Insgesamt, war die Hauptfragestellung in dieser Arbeit ‘Wie viel?’, d.h. einerseits die Ermittlung der maximalen, als auch der für Zelladhäsion optimalen Ligandendichte. Im ersten praktischen Teil der vorliegenden Arbeit (Klassische Quantifizierung) wurden Liganden in der gesamten Hydrogelschicht, als auch speziell in oberen Bereichen der Schichten quantifiziert. Die Untersuchung der Hydrogelschichten in Wellplatten und auf Glas funktionalisiert mit GRGDS und 125I-YRGDS erfolgte in Kapitel 3 mittels Radioaktivmessung. Wurden Hydrogelschichten mittels Inkubationsmethode funktionalisiert, konnte eine Sättigung mit Liganden bei etwa 600 µg/mL ermittelt werden. Mittels Einmischmethode funktionalisierte Hydrogele erreichten keine maximale Ligandenkonzentration in den Schichten, mit dem Verhältnis 2/1 als maximales verwendetes Verhältnis. Höhere Liganden zu Prepolymer Verhältnisse als 2/1 wurden jedoch nicht verwendet, um eine ausreichende Vernetzung der Hydrogele nicht zu gefährden. Zur Detektion mittels Röntgenphotoelektronenspektroskopie (XPS) und Flugzeit-Sekundärionen-Massen-spektrometrie (TOF-SIMS) (Kapitel 4) wurden eine fluorierte Aminosäure und ein iodiertes Peptid mit den Prepolymeren in molaren Verhältnissen von 1/2, 1/1 und 2/1 gemischt. Beide Methoden ermittelten eine maximale Ligandenkonzentration bei Verhältnissen von 1/1. Zusätzliche Liganden (2/1) führten zu keiner vermehrten Anbindung. Wesentlich im Zusammenhang mit der Ligandenquantifizierung auf Biomaterialien ist, diese an der Oberfläche, die für Zellen zugänglich ist, durchzuführen. Im zweiten Teil dieser Arbeit (Oberflächensensitive Quantifizierung) kamen daher Methoden zum Einsatz, die Liganden ausschließlich auf der Oberfläche quantifizierten. Zur Detektion mit Oberflächenplasmon-resonanz (SPR) und akustischer Oberflächenwellentechnologie (SAW) in Kapitel 5 musste die Standardbeschichtung der Hydrogele von Glas und Silikon auf Cystamin funktionalisierte Goldoberflächen übertragen werden. Mittels Ellipsometrie und Rasterkraftmikroskopie (AFM) konnte nur eine dünne und inhomogene Hydrogelbeschichtung nachgewiesen werden. Dennoch zeigten SPR und SAW die Unterbindung von Serum und Streptavidin (SA) Adsorption auf nicht funktionalisierten Schichten, jedoch eine spezifische und konzentrationsabhängige SA Bindung auf Hydrogelschichten, die mit Biocytin und GRGDSK-biotin funktionalisiert wurden. Die Ligandenquantifizierung mittels Enzymgekoppeltem Immunadsorptionstest (ELISA) und Enzymgekoppelten Lektinadsorptionstest (ELLA) (Kapitel 6) wurde auf Hydrogelschichten in Wellplatten und auf Glas angewendet, die mit verschiedenen Liganden mittels Inkubation und Einmischung funktionalisiert wurden. Das Modellmolekül Biocytin, das biotinylierte Peptid GRGDSK-biotin, das ECM Protein Fibronektin (FN), als auch die Modellzucker N-Acetyl-glukosamin (GlcNAc) und N-Acetyllaktosamin (LacNAc) konnten spezifisch in verschiedenen Konzentrationen nachgewiesen werden. Beispielhaft seien hier Schichten auf Glas genannt, die mittels Einmischmethode mit GRGDSK-biotin funktionalisiert wurden, da diese zum Vergleich in Kapitel 8 herangezogen wurden. Auf diesen Oberflächen wurde eine maximale Peptidkonzentration auf der Oberfläche bei einem Peptid zu Prepolymer Verhältnis von 1/5 ermittelt. Neben diesen verschiedenen Quantifzierungsmethoden ist die in vitro Analyse mit Zellen nicht zu vernachlässigen (Kapitel 7). Hierzu wurden Hydrogele auf Glas aufgebracht und mit GRGDS mittels Einmischmethode funktionalisiert. Durch Zählen adhärenter primärer humaner dermaler Fibroblasten (HDF) auf Mikroskopbildern wurde eine maximale Zelladhäsion bei dem Peptid zu Prepolymer Verhältnis von 1/5 festgestellt. Hingegen wurde ein Verhältnis von 1/2 für optimale Zelladhäsion ermittelt, wenn Zellen zur Quantifizierung von den Hydrogelen abgelöst und im CASY® Zellzähler quantifiziert wurden. Zusätzlich wurde die Zellvitalität durch Messung intrazellulärer Enzymaktivitäten gemessen, jedoch konnte kein Zusammenhang zwischen Zellvitalität und GRGDS Konzentration hergestellt werden. Adhärente HDFs waren in allen Fällen vital, unabhängig von der Ligandenkonzentration auf der Oberfläche. Auch die Mausfibroblasten Zelllinie NIH L929 wurde auf Hydrogelen mit verschiedenen GRGDS zu Prepolymer Verhältnissen durch Zählen adhärenter Zellen auf Mikroskopbildern untersucht. Diese im Verhältnis zu HDFs wesentlich kleineren Mauszellen benötigten höhere GRGDS Konzentrationen (2/1) für maximale Zelladhäsion. Nach der Ligandenquantifizierung in Kapitel 3 bis 7, wurden diese Ergebnisse in Kapitel 8 miteinander verglichen. Hierzu wurden Messungen auf Hydrogelschichten verwendet, die mittels Einmischmethode funktionalisiert wurden. Während die Quantifizierung mittels Radioaktivmessung in der gesamten Tiefe der Hydrogelschichten keine maximale Ligandenkonzentration ermitteln konnte, war in den oberen Bereichen der Schicht ein Maximum an Liganden bei 1/1 festzustellen (XPS, TOF-SIMS). SPR und SAW wurden zum Vergleich nicht herangezogen, da die Beschichtung auf Gold erst optimiert werden muss. Oberflächensensitive Quantifizierung mittels ELISA und Zelladhäsion, die lediglich die sterisch zugänglichen Liganden auf einer Oberfläche nachweisen, ergaben übereinstimmend eine optimale Ligandenkonzentration für SA Bindung und Zelladhäsion bei einem Peptid zu Prepolymer Verhältnis von 1/5. Dies unterstreicht, wie wichtig der Vergleich der Methoden, als auch die Verwendung von oberflächensensitiven Methoden ist. Der dritten Teil dieser Arbeit beschäftigte sich mit der biochemischen und strukturellen Nachahmung der komplexen extrazellulären Umgebung (Advanced ECM engineering), ein wichtiger Aspekt in der Biomaterialforschung, da zum größten Teil zwei-dimensionale Biomaterialien zum Einsatz kommen, die direkt mit Liganden kovalent funktionalisiert werden. Die ECM ist jedoch um ein Vielfaches komplexer und die bestmögliche Nachahmung ist Voraussetzung für eine bessere Akzeptanz durch Zellen und Gewebe. In Kapitel 9 wurde eine Möglichkeit aufgezeigt, das ECM Protein FN nicht-kovalent über Zucker-Lektinbindungen zu immobilisieren. Ein Schichtaufbau von Hydrogel, dem darauf durch Mikrokontakt-druckverfahren (MCP) kovalent gebundenen Zucker Poly-N-Acetyllaktosamin (polyLacNAc) und den darauf nicht-kovalent gebundenen Galektin His6CGL2 und FN, konnte mit Fluoreszenzfärbung elegant nachgewiesen werden. Optimale Konzentrationen für den Schichtaufbau wurden mittels ELLA/ELISA auf Hydrogelschichten ermittelt, die durch Inkubation mit dem Zucker funktionalisiert wurden. Nur der komplette Schichtaufbau konnte zufriedenstellende HDF Adhäsion vermitteln und im Vergleich zu Zellkulturpolystyrol (TCPS) Oberflächen konnten HDFs auf dem biomimetischen Schichtaufbau schneller adhärieren und spreiten. Zudem wurde die Umorganisierung von auf Glas adsorbiertem FN, auf NCO-sP(EO-stat-PO) kovalent gebundenem FN und biomimetisch über polyLAcNAc-His6CGL2 gebundenem FN durch HDFs verglichen. Nur auf den biomimetischen Oberflächen schien eine Umorganisation durch die Zellen möglich, wie sie auch in der ECM zu finden ist. Diese biomimetische und flexible Präsentation eines Proteins erwies sich als vielversprechende Möglichkeit eine biomimetischere Oberfläche für Zellen zu schaffen, die eine optimale Biokompatibilität ermöglichen könnte. Auch die strukturelle Nachahmung der ECM ist eine vielversprechende Strategie zum Nachbau der ECM. In Kapitel 10 wurde ein Einschrittverfahren zur Herstellung synthetischer, bioaktiver und degradierbarer Faserkonstrukte durch Elektrospinnen zur Nachahmung der ECM präsentiert. In diesem System wurden durch Zugabe von NCO-sP(EO-stat-PO) als reaktives Additiv zu Poly(D,L-laktid-co-Glycolid) (PLGA) Fasern hergestellt, die mit einer ultradünnen, inerten Hydrogelschicht versehen waren. Es konnte gezeigt werden, dass durch die Verwendung von NCO-sP(EO-stat-PO) als Additiv die Adsorption von Rinderserumalbumin (BSA) im Vergleich zu PLGA um 99,2% reduziert, die Adhäsion von HDFs verhindert und die Adhäsion von humanen mesenchymalen Stammzellen (MSC) minimiert werden konnten. Spezifische Bioaktivierung wurde durch Zugabe von Peptidsequenzen zur Spinlösung erreicht, welche kovalent in die Hydrogelschicht eingebunden werden konnten und kontrollierte Zell-Faser Interaktionen ermöglichten, Um die spezifische Zelladhäsion an solchen inerten Fasern zu erzielen, wurde GRGDS kovalent auf der Faseroberfläche gebunden. Dies erfolgte durch Zugabe des Peptids zur Polymerlösung vor dem Elektrospinnen. Als Negativkontrolle wurde die Peptidsequenz GRGES an die Faseroberfläche gebunden, welche durch Zellen nicht erkannt wird. Während die Verhinderung unspezifischer Proteinadsorption für die Peptidmodifizierten Fasern erhalten blieb, konnten HDFs lediglich auf den mit GRGDS Peptid modifizierten Fasern adhärieren, proliferieren und nach zwei Wochen eine konfluente Zellschicht aus vitalen Zellen bilden. Zusätzlich konnten MSCs auf GRGDS funktionalisierten Fasern adhärieren. Liganden konnten auf Fasern quantifiziert werden, indem die ELISA Technik aus Kapitel 6 auf Faseroberflächen transferiert wurde. Um das Potential der biochemischen und strukturellen Nachbildung der ECM aufzuzeigen, wurden beide Ansätze miteinander kombiniert. Die Immobilisierung von polyLacNAc auf die Hydrogelfasern durch Inkubation und der Schichtaufbau mit His6CGL2 und FN resultierte in HDF Adhäsion. N2 - This thesis concerned the quantification of cell adhesion molecules (CAM) in and on thin hydrogel films as surface modification of biomaterials. The established and well characterized, per se inert NCO-sP(EO-stat-PO) hydrogel system which allows the easy and reproducible bioactivation with peptides was used as basis for this thesis. Two methods can be used to functionalize the coatings. Ligands can either be mixed into the prepolymer solution in prior to layer formation (mix-in method), or freshly prepared coatings can be incubated with ligand solution (incubation method). Divided into three major parts, the first part of the thesis dealt with the concentration of ligands in the bulk hydrogel, whereas the second part of the thesis focused on the surface sensitive quantification of CAMs at the biointerface. The results were correlated with cell adhesion kinetics. The third part of this thesis investigated the biochemical and the structural mimicry of the extracellular matrix (ECM). ECM proteins were presented via sugar-lectin mediated binding and cell behavior on these surfaces was analyzed. Cell behavior on three-dimensional fibers with identical surface chemistry as the coatings in the previous sections of the thesis was analyzed and correlated with the amount of peptide used for bioactivation. Overall, the main question of this work was ‘How much?’ regarding maximal as well as optimal ligand concentrations for controlled cell-hydrogel interactions. The focus in the first practical part of this thesis was to analyze the amount of ligands in NCO-sP(EO-stat-PO) hydrogels using classical quantification methods. Coatings in 96-well plates as well as on glass were functionalized with GRGDS and 125I-YRGDS for radioisotopic detection (Chapter 3). Using the incubation method for functionalization, a maximal ligand binding using peptide concentrations of 600 µg/mL could be determined. When functionalization was introduced via the mix-in method, a clear tendency for higher ligand concentrations with increasing ligand to prepolymer ratio was observed, but no maximal ligand binding could be detected with a ligand to prepolymer ratio of 2/1 being the highest ratio investigated. This ratio of 2/1 was not exceeded to ensure that complete crosslinking of the hydrogel was not affected. In Chapter 4, a fluorinated amino acid and an iodinated peptide were immobilized to the hydrogels using the mix-in method and were detected by X-ray photoelectron spectroscopy (XPS) and time-of-flight secondary ion mass spectrometry (TOF-SIMS). In these measurements, maximal ligand binding was detected for a ligand to prepolymer ratio of 1/1. Higher ligand to prepolymer ratios did not result in any significant increase in ligand concentrations in the surface near regions of the crosslinked hydrogels. To address the question of how many ligands were actually accessible for cell interaction at the interface, surface sensitive quantification methods were applied in the second part of this thesis. For the quantification with surface plasmon resonance (SPR) and surface acoustic wave technology (SAW) (Chapter 5), the hydrogel coating procedure needed to be transferred onto cystamine functionalized gold surfaces. Characterization with ellipsometry and atomic force microscopy (AFM) revealed inhomogeneous cystamine binding to the activated surfaces, which resulted in inhomogeneous coatings. Nevertheless, it could be shown that SPR as well as SAW were suitable methods for the surface sensitive quantification of the ligand concentration on NCO-sP(EO-stat-PO) hydrogels. Non-functionalized coatings resisted non-specific serum as well as streptavidin (SA) adsorption. Coatings functionalized with biocytin and GRGDSK-biotin introduced specific SA binding that was dependent on the biotin concentration at the surface. Additionally, enzyme linked immunosorbent assay (ELISA) and enzyme linked lectin assay (ELLA) (Chapter 6) were applied to coatings in 96-well plates and on glass. Coatings were functionalized with the model molecule biocytin, the biotinylated peptide GRGDSK-biotin, the ECM protein fibronectin (FN), as well as the carbohydrates N-acetylglucosamine (GlcNAc) and N-acetyllactosamine (LacNAc). All ligands could be successfully detected with antibodies or SA via ELISA or ELLA. Maximal GRGDSK-biotin binding to the hydrogel coatings on glass was achieved at a peptide to prepolymer ratio of 1/5, which was used as reference value in Chapter 8. Last but not least, cell adhesion (Chapter 7) was quantified depending on the GRGDS concentration on hydrogel coatings on glass. Maximal adhesion of primary human dermal fibroblast (HDF) was observed at GRGDS to prepolymer ratios of 1/5, when adherent cells were counted on life cell images. Quantification of adherent cells using the CASY® cell counter revealed maximal HDF adhesion at molar ligand to prepolymer ratios of 1/2. However, cell vitality detected by intracellular enzyme activities was not dependent on the GRGDS concentration. Cells which managed to adhere were vital regardless of the amount of ligands present. Additionally, adhesion of fibroblasts from the murine cell line NIH L929 was analyzed by counting on life cell images. These cells, being much smaller than the HDF cells, needed higher GRGDS to prepolymer ratios (2/1) for proper cell adhesion. All quantification methods applied to analyze hydrogels which were functionalized by the mix-in method in Chapter 3, 4, 6 and 7, were compared in Chapter 8. Radiodetection gave information about the ligand concentrations throughout the whole hydrogel and no maximal amount of ligands could be detected when increasing the peptide to prepolymer ratio. In contrast, XPS and TOF-SIMS which only penetrated the surface near regions of the coating, a maximal ligand binding to the hydrogel was detected for 1/1 ratios. SPR and SAW were not included in this comparison, as the coatings on gold need to be optimized first. The two surface sensitive quantification methods (ELISA and HDF adhesion) could give information about the quantity of peptide which was sterically available for SA or cell binding. With these methods, maximal SA and cell binding was detected at ratios of 1/5. These results underline the importance of carefully compare the different methods. Beside ligand quantification on hydrogels, the third part of this thesis was concerned with the biochemical and structural mimicry of the ECM by advanced ECM engineering to design biomimetic biomaterials that are better accepted by cells and tissue. The subject of Chapter 9 was the biomimetic and flexible presentation of the ECM protein FN. FN was attached via sugar-lectin mediated binding to NCO-sP(EO-stat-PO) hydrogels. The build-up of the covalently immobilized sugar poly-N-acetyllactosamine (polyLacNAc), the subsequent non-covalent binding of the fungal galectin His6CGL2, and FN could be elegantly proven by fluorescent staining on coatings which were functionalized with the sugar by micro contact printing (MCP). Further experiments were carried out on build-ups, where polyLacNAc was immobilized on the hydrogel by incubation. Optimal parameters for the layer build-up were determined by ELLA/ELISA. Only the complete build-up induced proper adhesion of HDFs. Compared to tissue culture polystyrene (TCPS), cells adhered and spread faster on the biomimetic surfaces. The flexible presentation of FN allowed HDFs to rearrange homogenously immobilized FN into fibrillar structures, which seemed not to be possible when FN was adsorbed on glass or covalently bound directly to the hydrogel coatings. This new approach of a flexible and biomimetic presentation of an ECM protein allows new ways to design biomaterials with best possible cell-material interactions. The work described in Chapter 10 focused on the structural mimicry of the fibrous ECM structures by electrospinning of synthetic, bioactive, and degradable fibers. Poly(D,L-lactide-co-glycolide) (PLGA) and NCO-sP(EO-stat-PO) were electrospun out of one solution in an easy one-step preparation resulting in fibers with an ultrathin inert hydrogel layer at the surface. By adding GRGDS to the solution prior to electrospinning, specifically interacting fibers could be obtained. In comparison to PLGA, the adsorption of bovine serum albumin (BSA) could be reduced by 99.2%. As a control, the non-active peptide GRGES was immobilized to the fiber. These fibers did not allow cell adhesion, showing that the integrity of the hydrogel coated fibers was not affected by the immobilization of peptides. HDF adhesion was obtained by functionalization with GRGDS, leading to the adhesion, spreading, and proliferation of HDFs. Also mesenchymal stem cells (MSC) could adhere to GRGDS functionalized fibers. Additionally, for ligand quantification, the ELISA technique was successfully transferred to fiber substrates. To highlight the potential of the approaches for the biochemical and structural mimicry of the ECM, the sugar polyLacNAc was immobilized on the PLGA/sP(EO-stat-PO) fibers followed by the subsequent layer build-up with His6CGL2 and FN. These fibers triggered HDF adhesion. KW - Hydrogel KW - Biomaterial KW - Zelladhäsion KW - Adsorption KW - Ligand KW - Quantifizierung KW - Proteinadsorption KW - Funktionalisierung KW - protein adsorption Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-74454 ER - TY - JOUR A1 - Vogel, Benjamin A1 - Löschberger, Anna A1 - Sauer, Markus A1 - Hock, Robert T1 - Cross-linking of DNA through HMGA1 suggests a DNA scaffold N2 - Binding of proteins to DNA is usually considered 1D with one protein bound to one DNA molecule. In principle, proteins with multiple DNA binding domains could also bind to and thereby cross-link different DNA molecules. We have investigated this possibility using high-mobility group A1 (HMGA1) proteins, which are architectural elements of chromatin and are involved in the regulation of multiple DNA-dependent processes. Using direct stochastic optical reconstruction microscopy (dSTORM), we could show that overexpression of HMGA1a-eGFP in Cos-7 cells leads to chromatin aggregation. To investigate if HMGA1a is directly responsible for this chromatin compaction we developed a DNA cross-linking assay. We were able to show for the first time that HMGA1a can cross-link DNA directly. Detailed analysis using point mutated proteins revealed a novel DNA cross-linking domain. Electron microscopy indicates that HMGA1 proteins are able to create DNA loops and supercoils in linearized DNA confirming the cross-linking ability of HMGA1a. This capacity has profound implications for the spatial organization of DNA in the cell nucleus and suggests cross-linking activities for additional nuclear proteins. KW - DNA Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-68865 ER - TY - JOUR A1 - Wagner, Toni U. A1 - Fischer, Andreas A1 - Thoma, Eva C. A1 - Schartl, Manfred T1 - CrossQuery : A Web Tool for Easy Associative Querying of Transcriptome Data N2 - Enormous amounts of data are being generated by modern methods such as transcriptome or exome sequencing and microarray profiling. Primary analyses such as quality control, normalization, statistics and mapping are highly complex and need to be performed by specialists. Thereafter, results are handed back to biomedical researchers, who are then confronted with complicated data lists. For rather simple tasks like data filtering, sorting and cross-association there is a need for new tools which can be used by non-specialists. Here, we describe CrossQuery, a web tool that enables straight forward, simple syntax queries to be executed on transcriptome sequencing and microarray datasets. We provide deepsequencing data sets of stem cell lines derived from the model fish Medaka and microarray data of human endothelial cells. In the example datasets provided, mRNA expression levels, gene, transcript and sample identification numbers, GO-terms and gene descriptions can be freely correlated, filtered and sorted. Queries can be saved for later reuse and results can be exported to standard formats that allow copy-and-paste to all widespread data visualization tools such as Microsoft Excel. CrossQuery enables researchers to quickly and freely work with transcriptome and microarray data sets requiring only minimal computer skills. Furthermore, CrossQuery allows growing association of multiple datasets as long as at least one common point of correlated information, such as transcript identification numbers or GO-terms, is shared between samples. For advanced users, the object-oriented plug-in and event-driven code design of both server-side and client-side scripts allow easy addition of new features, data sources and data types. KW - CrossQuery Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-76088 ER - TY - JOUR A1 - Wagner, Toni U. A1 - Fischer, Andreas A1 - Thoma, Eva C. A1 - Schartl, Manfred T1 - CrossQuery: A Web Tool for Easy Associative Querying of Transcriptome Data JF - PLoS ONE N2 - Enormous amounts of data are being generated by modern methods such as transcriptome or exome sequencing and microarray profiling. Primary analyses such as quality control, normalization, statistics and mapping are highly complex and need to be performed by specialists. Thereafter, results are handed back to biomedical researchers, who are then confronted with complicated data lists. For rather simple tasks like data filtering, sorting and cross-association there is a need for new tools which can be used by non-specialists. Here, we describe CrossQuery, a web tool that enables straight forward, simple syntax queries to be executed on transcriptome sequencing and microarray datasets. We provide deep-sequencing data sets of stem cell lines derived from the model fish Medaka and microarray data of human endothelial cells. In the example datasets provided, mRNA expression levels, gene, transcript and sample identification numbers, GO-terms and gene descriptions can be freely correlated, filtered and sorted. Queries can be saved for later reuse and results can be exported to standard formats that allow copy-and-paste to all widespread data visualization tools such as Microsoft Excel. CrossQuery enables researchers to quickly and freely work with transcriptome and microarray data sets requiring only minimal computer skills. Furthermore, CrossQuery allows growing association of multiple datasets as long as at least one common point of correlated information, such as transcript identification numbers or GO-terms, is shared between samples. For advanced users, the object-oriented plug-in and event-driven code design of both server-side and client-side scripts allow easy addition of new features, data sources and data types. KW - Microarray data KW - Sprouting angiogenesis KW - Cell-line KW - Biology Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-134787 VL - 6 IS - 12 ER - TY - THES A1 - Gerold, Kay T1 - CTLA4 and CLEC16A in Type 1 Diabetes - Looking behind the association T1 - CTLA4 und CLEC16A in Typ 1 Diabetes - Ein Blick hinter die Assoziation N2 - Type 1 diabetes is an autoimmune disease that leads to the destruction of insulin-producing pancreatic beta cells and consequently to hyperglycemia. In the last 60 years, the prevalence of type 1 diabetes has been increasing constantly and is predicted to continue rising. About 80% of the disease risk is attributable to the genetic variation. Thanks to genome wide association studies the number of known disease-associated polymorphisms climbed from five to 53 in the last 10 years. As these studies reveal possible candidate genes but not underlying mechanisms we strove to take the next step and explore the association of two genes suggested by these studies with type 1 diabetes. As a method of choice we decided to use lentiviral RNAi in non obese diabetic (NOD) mice, a widely-used model for type 1 diabetes, introducing a shRNA directed against the target message into the genome of this mouse strain via a lentivirus. This allowed us to study the partial loss-of-function of the target gene within the context of diabetes, directly seeing its effect on autoimmune mechanisms. In this thesis we examined two different genes in this manner, Ctla4 and Clec16a. A type 1 diabetes associated polymorphism in the CTLA4 gene had been found to alter the splicing ratio of its variants soluble CTLA-4 (sCTLA-4) and full length CTLA-4, the associated allele producing less sCTLA-4 than the protective allele. We mimicked this effect by specifically targeting the sCtla4 mRNA via lentiviral RNAi in the NOD model. As a result we could confirm the reduction of sCTLA-4 to accelerate type 1 diabetes development. Furthermore we could show a function of sCTLA-4 in regulatory T cells, more specifically at least partly in their ability to modulate costimulation by antigen presenting cells. The second candidate gene, Clec16a was targeted with the shRNA in a way that was designed to knock down most splice variants. As the gene function and the effect of the associated SUMMARY 10 polymorphism was unknown, we reasoned this method to be feasible to investigate its role in type 1 diabetes. The knockdown of Clec16a in NOD mice resulted in an almost complete protection from diabetes development that could be attributed to T cells dysfunction. However, as expression patterns and a study of the Drospophila orthologue suggested a possible role of CLEC16A in antigen presentation we also examined antigen presenting cells in the thymus and periphery. Although we did not detect any effect of the knockdown on peripheral antigen presenting cells, thymic epithelial cells were clearly affected by the loss of CLEC16A, rendering them more activated and shifting the ratio of cortical to medullary epithelial cells in favor of cortical cells. We therefore suggest a role of CLEC16A in the selection of T cells, that needs, however, to be further investigated. In this thesis we provided a feasible and fast method to study function of genes and even of single splice variants within the NOD mouse model. We demonstrate its usefulness on two candidate genes associated with type 1 diabetes by confirming and unraveling the cause of their connection to the disease. N2 - Typ 1 Diabetes ist eine Autoimmunerkrankung, bei der es zur Zerstörung von pankreatischen beta-Zellen und daraus folgend zu einer Hyperglykämie kommt. In den letzten 60 Jahren stieg die Diabetes Prävalenz stetig an und Studien sagen voraus, dass sich dieser Trend in Zukunft noch stärker fortsetzen wird. Man geht davon aus, dass ca. 80% des Erkrankungsrisikos für autoimmunen Diabetes genetischer Natur sind. Dank Genom-weiter Assoziationsstudien wurde dieser Beitrag gerade in den letzten zehn Jahren immer weiter aufgeklärt und bis heute wurden 53 mit Typ 1 Diabetes assozierte Polymorphismen identifiziert. Da diese Studien es nur leisten können, mögliche Kandidatengene aufzuzeigen, allerdings keine Aussagen über die zugrunde liegenden Krankheitsmechanismen machen können, haben wir es uns zum Ziel gesetzt diesen nächsten Schritt zu gehen und zwei der durch diese Studien vorgeschlagenen Gene auf ihre Rolle in der Typ 1 Diabetes Ätiologie zu untersuchen. Unsere Methode der Wahl war die lentivirale RNA Interferenz im Mausmodell der nonobese diabetic mouse (NOD). Via lentiviralen Vektoren wird die Information für eine shRNA, die an die mRNA des Zielgenes bindet, in das Empfängergenom integriert. Die daraus folgende Herabregulierung der Ziel-mRNA erlaubt es uns den Effekt dieser fehlenden Geninformation auf die Immunregulation zu analysieren. Auf diese Weise wurden in dieser Thesis zwei Kandidatengene untersucht, Ctla4 und Clec16a. Der mit Typ 1 Diabetes assoziierte Polymorphismus im CTLA4 Gen verursacht eine Verschiebung im Splice Verhältnis der beiden Isoformen im Menschen, soluble CTLA-4 (sCTLA-4) und full length CTLA-4, zu Gunsten der full length Variante. Im NOD Mausmodell konnte diese Verschiebung durch eine Einführung einer gegen sCtla4 gerichteten shRNA nachgeahmt werden. In Folge dessen konnten wir bestätigen, dass eine eduzierung der sCTLA-4 Variante die Typ 1 Diabetes Entwicklung beschleunigt. Zudem ZUSAMMENFASSUNG 12 konnten wir eine Rolle von sCTLA-4 in der Funktion von regulatorischen T Zellen, genauer in deren Fähigkeit die Kostimulation durch Antigen präsentierenden Zellen zu modulieren, zeigen. Bei dem zweiten Gen, das in dieser Thesis untersucht wurde handelte sich um Clec16a. Es wurde von einer shRNA herunterreguliert, die den Großteil der Varianten abdeckt, da die Funktion des Genes, sowie die Auswirkungen des assoziierten Polymorphismus unbekannt waren. Der Knockdown von Clec16a in der NOD Maus verursachte einen fast vollständigen Schutz vor Diabetes, der im weiteren Verlauf den T Zellen zugerechnet werden konnte. Allerdings hatten das Expressionsmuster, sowie eine Studie am Drosophila Ortholog ema eine Rolle von CLEC16A in Antigen präsentierenden Zellen impliziert. Folglich untersuchten wir die Möglichkeit, dass diese Zellgruppe in der Peripherie oder im Thymus durch den CLEC16A Mangel beeinträchtigt sein könnten. Tatsächlich wies die Zellgruppe, die im Thymus für die Selektion von T Zellen zuständig ist einen erhöhten Aktivierungsstatus auf, was auf eine modifizierte T Zell Selektion hindeuten könnte. Mit dieser Arbeit konnten wir eine praktikable und schnelle Methode, für die funktionelle Analyse von Genen und sogar einzelnen Splice Varianten, aufzeigen. Wir konnten ihren Nutzen weiterhin an zwei mit Typ 1 Diabetes assoziierten Kandidatengenen unter Beweis stellen, indem wir so die Assoziation bestätigen und Licht auf die zugrunde liegenden Mechanismen werfen konnten. KW - Diabetes mellitus KW - Typ 1 KW - Molekulargenetik KW - Type 1 Diabetes Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-66617 ER - TY - JOUR A1 - Arnold, Thomas A1 - Braunschweig, Holger A1 - Gruss, Katrin T1 - cyclo-Tri-mu-oxido-tris{[(eta 5,eta 5)-1,2-bis(cyclopentadienyl)-1,1,2,2-tetramethyldisilane]zirconium(IV)}: a trimeric disila-bridged oxidozirconocene JF - Acta Crystallographica Section E: metal-organic compounds N2 - The title compound, [Zr(3)(C(14)H(20)Si(2))(3)O(3)], consists of three disila-bridged zirconocene units, which are connected via an oxide ligand, forming a nearly planar six-membered ring with a maximum displacement of 0.0191 (8) A. The compound was isolated as a by-product from a mixture of [(C(5)H(4)SiMe(2))(2)ZrCl(2)] and Li[AlH(4)] in Et(2)O. KW - Kristallographie Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-134802 VL - 67 ER - TY - JOUR A1 - Braunschweig, Holger A1 - Arnold, Thomas A1 - Gruss, Katrin T1 - cyclo-Tri-mu-oxido-tris{[(eta 5,eta 5)-1,2-bis(cyclopentadienyl)-1,1,2,2-tetramethyldisilane]zirconium(IV)}: atrimeric disila-bridged oxidozirconocene N2 - no abstract available KW - Chemie KW - single-crystal X-ray study KW - T = 174 K KW - R factor = 0.027 KW - wR factor = 0.069 KW - data-to-parameter ratio = 23.6. Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-74737 ER - TY - JOUR A1 - Avota, Elita A1 - Gassert, Evelyn A1 - Schneider-Schaulies, Sibylle T1 - Cytoskeletal Dynamics: Concepts in Measles Virus Replication and Immunomodulation N2 - In common with most viruses, measles virus (MV) relies on the integrity of the cytoskeleton of its host cells both with regard to efficient replication in these cells, but also retention of their motility which favors viral dissemination. It is, however, the surface interaction of the viral glycoprotein (gp) complex with receptors present on lymphocytes and dendritic cells (DCs), that signals effective initiation of host cell cytoskeletal dynamics. For DCs, these may act to regulate processes as diverse as viral uptake and sorting, but also the ability of these cells to successfully establish and maintain functional immune synapses (IS) with T cells. In T cells, MV signaling causes actin cytoskeletal paralysis associated with a loss of polarization, adhesion and motility, which has been linked to activation of sphingomyelinases and subsequent accumulation of membrane ceramides. MV modulation of both DC and T cell cytoskeletal dynamics may be important for the understanding of MV immunosuppression at the cellular level. KW - Virologie KW - measles virus KW - cytoskeleton KW - sphingomyelinase Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-69092 ER - TY - JOUR A1 - Avota, Elita A1 - Gulbins, Erich A1 - Schneider-Schaulies, Sibylle T1 - DC-SIGN Mediated Sphingomyelinase-Activation and Ceramide Generation Is Essential for Enhancement of Viral Uptake in Dendritic Cells N2 - As pattern recognition receptor on dendritic cells (DCs), DC-SIGN binds carbohydrate structures on its pathogen ligands and essentially determines host pathogen interactions because it both skews T cell responses and enhances pathogen uptake for cis infection and/or T cell trans-infection. How these processes are initiated at the plasma membrane level is poorly understood. We now show that DC-SIGN ligation on DCs by antibodies, mannan or measles virus (MV) causes rapid activation of neutral and acid sphingomyelinases followed by accumulation of ceramides in the outer membrane leaflet. SMase activation is important in promoting DC-SIGN signaling, but also for enhancement of MV uptake into DCs. DCSIGN-dependent SMase activation induces efficient, transient recruitment of CD150, which functions both as MV uptake receptor and microbial sensor, from an intracellular Lamp-1+ storage compartment shared with acid sphingomyelinase (ASM) within a few minutes. Subsequently, CD150 is displayed at the cell surface and co-clusters with DC-SIGN. Thus, DCSIGN ligation initiates SMase-dependent formation of ceramide-enriched membrane microdomains which promote vertical segregation of CD150 from intracellular storage compartments along with ASM. Given the ability to promote receptor and signalosome co-segration into (or exclusion from) ceramide enriched microdomains which provide a favorable environment for membrane fusion, DC-SIGN-dependent SMase activation may be of general importance for modes and efficiency of pathogen uptake into DCs, and their routing to specific compartments, but also for modulating T cell responses. KW - Dendritische Zelle Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-69056 ER - TY - JOUR A1 - Krauss, Jochen A1 - Gallenberger, Iris A1 - Steffan-Dewenter, Ingolf T1 - Decreased Functional Diversity and Biological Pest Control in Conventional Compared to Organic Crop Fields N2 - Organic farming is one of the most successful agri-environmental schemes, as humans benefit from high quality food, farmers from higher prices for their products and it often successfully protects biodiversity. However there is little knowledge if organic farming also increases ecosystem services like pest control. We assessed 30 triticale fields (15 organic vs. 15 conventional) and recorded vascular plants, pollinators, aphids and their predators. Further, five conventional fields which were treated with insecticides were compared with 10 non-treated conventional fields. Organic fields had five times higher plant species richness and about twenty times higher pollinator species richness compared to conventional fields. Abundance of pollinators was even more than one-hundred times higher on organic fields. In contrast, the abundance of cereal aphids was five times lower in organic fields, while predator abundances were three times higher and predator-prey ratios twenty times higher in organic fields, indicating a significantly higher potential for biological pest control in organic fields. Insecticide treatment in conventional fields had only a short-term effect on aphid densities while later in the season aphid abundances were even higher and predator abundances lower in treated compared to untreated conventional fields. Our data indicate that insecticide treatment kept aphid predators at low abundances throughout the season, thereby significantly reducing top-down control of aphid populations. Plant and pollinator species richness as well as predator abundances and predator-prey ratios were higher at field edges compared to field centres, highlighting the importance of field edges for ecosystem services. In conclusion organic farming increases biodiversity, including important functional groups like plants, pollinators and predators which enhance natural pest control. Preventative insecticide application in conventional fields has only short-term effects on aphid densities but long-term negative effects on biological pest control. Therefore conventional farmers should restrict insecticide applications to situations where thresholds for pest densities are reached. KW - Landwirtschaft Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-69005 ER - TY - JOUR A1 - de Vreeze, Ronald S. A. A1 - Coevorden, Frits van A1 - Boerrigter, Lucie A1 - Nederlof, Petra M. A1 - Haas, Rick L. A1 - Bras, Johannes A1 - Rosenwald, Andreas A1 - Mentzel, Thomas A1 - de Jong, Daphne T1 - Delineation of Chondroid Lipoma: An Immunohistochemical and Molecular Biological Analysis JF - Sarcoma N2 - Aims Chondroid lipoma (CL) is a benign tumor that mimics a variety of soft tissue tumors and is characterized by translocation (11;16). Here, we analyze CL and its histological mimics. Methods CL ( ) was compared to a variety of histological mimics ( ) for morphological aspects and immunohistochemical features including cyclinD1(CCND1). Using FISH analysis, CCND1 and FUS were investigated as potential translocation partners. Results All CLs were strongly positive for CCND1. One of 4 myoepitheliomas, CCND1, was positive. In well-differentiated lipomatous tumors and in chondrosarcomas, CCND1 was frequently expressed, but all myxoid liposarcomas were negative. FISH analysis did not give support for direct involvement of CCND1 and FUS as translocation partners. Conclusions Chondroid lipoma is extremely rare and has several and more prevalent histological mimics. The differential diagnosis of chondroid lipomas can be unraveled using immunohistochemical and molecular support. KW - Lipom Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-135103 VL - 2011 IS - Article ID 638403 ER - TY - THES A1 - Pletinckx, Katrien T1 - Dendritic cell maturation and instruction of CD4+ T cell tolerance in vitro T1 - Reifung der dendritischen Zelle und Instruktion der CD4+ T Zell Toleranz in vitro N2 - Effective T cell immunity was believed to occur by mature DC, whereas tolerogenicity was attributed strictly to immature DC phenotypes. However, intermediate DC maturation stages were identified conditioned by inflammatory mediators like TNF. Furthermore, the T cell tolerance mechanisms are dependent on distinct modes and intensities of co-stimulation. Therefore, in this study it was addressed how distinct DC maturation signatures instruct CD4+ T cell tolerance mechanisms. DC acquire antigens from apoptotic cells for self-peptide-MHC presentation and functionally adapt presumed tolerogenic DC phenotypes. Here, immature murine bone-marrow derived DC representing both inflammatory and conventional DC subsets adapted a maturationresistant DC signature upon apoptotic cell recognition but no additional tolerogenic features. Immature DC instruct CD4+ FoxP3+ regulatory T cells in a TGF-β prone micro-environment or generate anergic CD4+ T cells hampered in the TCR-induced proliferation and IL-2 secretion. Secondary stimulation of such anergic CD4+ T cells by immature DC increased primarily IL-10 production and conferred regulatory function. These IL-10+ regulatory T cells expressed high levels of CTLA-4, which is potently induced by immature DC in particular. Data in this work showed that anergic T cells can be re-programmed to become IL-10+ regulatory T cells upon ligation of CTLA-4 and CD28 signalling cascades by B7 costimulatory ligands on immature DC. In contrast, semi-mature DC phenotypes conditioned by the inflammatory mediator TNF prevented autoimmune disorders by induction of IL-10+ Th2 responses as demonstrated previously. Here, it was shown that TNF as an endogenous maturation stimulus and pathogenic Trypanosoma brucei variant-specific surface glycoproteins (VSG) induced highly similar DC gene expression signatures which instructed default effector Th2 responses. Repetitive administration of the differentially conditioned semi-mature DC effectively skewed T cell immunity to IL-10+ Th2 cells, mediating immune deviation and suppression. Collectively, the data presented in this work provide novel insights how immature and partially mature DC phenotypes generate T cell tolerance mechanisms in vitro, which has important implications for the design of effective DC-targeted vaccines. Unravelling the DC maturation signatures is central to the long-standing quest to break tolerance mimicked by malignant tumours or re-establish immune homeostasis in allergic or autoimmune disorders. N2 - Reife DC sind potente Induktoren von T Zell Immunität, wogegen unreife DC Stadien zur Induktion von Immuntoleranz befähigt sind. Zudem sind intermediäre semireife DC Entwicklungsstadien identifiziert worden, wie sie nach Behandlung mit inflammatorischen TNF entstehen. Die bekannten T Zell Toleranzmechanismen sind wiederum abhängig von unterschiedlicher Art und Intensität von Kostimulation. Hier wurde deshalb untersucht wie verschiedene DC Reifungsstadien CD4+ T Zelltoleranz induzieren können. DC nehmen apoptotisches Zellmaterial auf, was als Antigenquelle zur Präsentation von MHC/Selbstpeptid-Komplexen genutzt wird und tolerogene Funktionen in DC hervorrufen kann. Unsere Ergebnisse zeigten dass aus Knochenmark generierte DC der Maus, die sowohl inflammatorische als auch klassische DC Subtypen darstellen, nach Erkennung apoptotischen Zellmaterials reifungsresistent wurden, jedoch unverändert unreif und keine neuen tolerogenen Funktionen erwarben. Unreife DC induzierten in Gegenwart von TGF-β CD4+ FoxP3+ regulatorische T Zellen und in dessen Abwesenheit anergische CD4+ T Zellen. Wiederholte Stimulation anergischer CD4+ T Zellen durch unreife DC, induzierte deren IL-10 Produktion und regulatorische Eigenschaften. Diese IL-10+ regulatorischen T Zellen zeigten keine FoxP3 Expression, jedoch verstärkt CTLA-4, insbesondere nach Interaktion mit unreifen DC. Zusammen zeigten die hier erhaltenen Daten, dass das Reprogrammieren anergischer T Zellen zu IL-10+ regulatorischen T Zellen über CTLA-4 als auch über CD28 Signalkaskaden durch deren B7 Liganden auf der Zelloberfläche unreifer DC gesteuert wird. Frühere Arbeiten zeigten, dass repetitive Injektion semireifer DC, Autoimmunerkrankungen vorbeugen konnten durch die Induktion IL-10+ Th2 Antworten. Hier konnte gezeigt werden dass TNF als endogener Reifungsstimulus sowie pathogene T. brucei Varianten-spezifische Glykoproteine (VSG) sehr ähnliche semireife DC Reifungsqualitäten hervorrufen. Die entsprechend generierten Th2 Effektor Zellen unterschieden sich lediglich geringfügig in deren Zytokinproduktion. Repetitive Injektionen dieser semireifen DC induzierten ebenfalls IL-10+ Th2 Differenzierung und effektive Immundeviation in vivo. Insgesamt hat die vorliegende Arbeit wichtige Erkenntnisse ergeben, wie unreife und semireife DC die Generierung unterschiedlicher T Zell Toleranzmechanismen in vitro unterstützen. Diese Erkenntnisse sind ein wichtiger Schritt bei der Entwicklung effektiver DC-basierter Immunvakzinen. Die Definition der verschiedenen DC Reifungsstadien ist von großer Bedeutung bei der Optimierung von Behandlungsverfahren gegen infektiöse Erreger, Krebs oder Autoimmunerkrankungen. KW - Dendritische Zelle KW - T-Lymphozyt KW - Immuntoleranz KW - Toleranz KW - Dendritic cell KW - tolerance Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-67375 ER - TY - JOUR A1 - Schraven, Sebastian P. A1 - Plontke, Stefan K. A1 - Syha, Roland A1 - Fend, Falko A1 - Wolburg, Hartwig A1 - Adam, Patrick T1 - Dendritic cell tumor in a salivary gland lymph node: a rare differential diagnosis of salivary gland neoplasms N2 - Dendritic cell tumors are extremely rare neoplasms arising from antigen-presenting cells of the immune system. We report a case of a 69-year-old man with an unremarkable medical history who presented with a 2-months history of a gradually enlarging painless, firm, mobile, 2 × 2-cm swelling at the caudal pole of the left parotid gland without systemic symptoms. Histologically, the tumor consisted of a spindle cell proliferation in an intraparotideal lymph node. Based on the histopathologic, immunohistochemical and electron microscopic findings, a dendritic cell tumor, not otherwise specified (NOS) in an intraparotideal lymph node was diagnosed. The patient underwent complete tumor resection, and is currently free of disease, 2 years after surgery. These extremely rare tumors must be distinguished from other more common tumors in the salivary glands. Awareness that dendritic cell tumors may occur in this localization, careful histologic evaluation and ancillary immunohistochemical and electron microscopical analyses should allow for recognition of this entity. Virtual Slides: The virtual slide(s) for this article can be found here: http://www.diagnosticpathology.diagnomx.eu/vs/1614859498581601. KW - Medizin KW - Dendritic cell tumor KW - salivary gland lymph node Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-69190 ER - TY - THES A1 - Hauber, Melanie Erika T1 - Description and Improvement of the 'Whedo'-Aquaculture-System in Malanville (North of Benin) T1 - Beschreibung und Entwicklung des \'Whedo\'-Aquakultur-Systems in Malanville (Nord Benin) N2 - This work delves into the recently developed ‘Whedo’-aquaculture-system in the rural community of Malanville (North Benin)and aims on providing a closer insight on this – for the area--recent system including the ecological but also the sociological and economical aspects in order to develop this extensive traditional fishery to a more productive semi-intensive aquaculture system. With the retreat of the flood ‘Whedos’ usually become infested with numerous hydato-and tenagophytes, while the presence and density of the free-floating macrophytes were positively related to the nutrient content of the ‘Whedo’. Extensive plant infestation also affects water quality through the decomposition of organic material and its accumulation in thick mud layers on the pond bottom as well as through the nocturnal oxygen consumption. Unfavourable water quality, especially low dissolved oxygen as well as high conductivity and nitrite levels, was identified to be the main factor determining which fish species were able to survive the harsh conditions prevailing in the ‘Whedos’ during the dry season. With the deteriorating water quality with advancing dry season, fish diversity decreased significantly leaving only species that are highly adapted to such unfavourable conditions. The most abundant species were Clarias gariepinus, Heterotis niloticus, Oreochromis niloticus L., Hemichromis c.f. letourneauxi, Polypterus senegalus and Epiplatys spilargyreius. Besides, the investigations also concentrated on the fish diversity of the rivers Niger and Sota with the results that for three species distribution gaps could be closed and for further three species their already known distribution could be expanded. But otherwise it could also be detected that some economically important species that were abundant in the past. In regard to the ‘Whedo’-management, the investigations showed that the owners lack most of the knowledge on appropriate management strategies, e.g. the feeding and stocking regime. The exploitation period depends on the extent of the previous annual flood and the location of the ‘Whedo’ within the floodplain, but the main season is from February to April. The biomass harvested on a hectare basis separated for each of the ‘Whedos’ averaged 17 tons/ha in 2008 and 8.6 tons/ha in 2009. However, 72 percent of the total biomass of Clarias only had an average weight of 40 grams. Therefore, two separated feeding trials were conducted and in total 6 supplementary feeds were tested on Clarias gariepinus. Groundnut cake, fish trash, rice bran, blood meal and azolla meal were used in different combination and rations to formulate the experimental diets. Diet containing 19 percent blood meal resulted in the best economical benefits showing that the use of high quality feed ingredients such as groundnut cake is not recommendable because local fish prices are too low to compensate the additional feeding costs. Instead of high quality feed farmers should focus on ingredients that are free of charge and easy to process. The supplementation based on 19 percent blood meal resulted in the doubling of the net profit compared to the income based on feeding only rice bran, thus provided higher additional income, enhancing the livelihood of the fish farmers. Concluding, the ‘Whedo’-aquaculture system is still in its infancy but nevertheless is an attractive system for the rural population because of existing knowledge of post-flood wetland fisheries as well as the low investment needed for its installation. Additionally, the local fish supply will increase and hence not only contribute to a better provision of protein-rich food and reduced pressure on the wild fish stocks but might also prevent fish prices to increase in a way that the poor won’t be able anymore to afford their most important source of animal protein. But fish farmers need more knowledge on appropriate management strategies and thus should be provided with technical support to guarantee a successful development and not to discourage the owners as a consequence of avoidable failures. Furthermore, the use of supplementary feed offers a cheap and effective means to increase the biomass production and thus enhance the extensive fishery to a semi-intensive aquaculture system. N2 - Die vorliegende Arbeit befasst sich mit dem unlängst entwickeltem ‚Whedo’-System im ländlichen Bezirk Malanville (Nordbenin)und wurde darauf ausgerichtet, nähere Erkenntnisse über die Bewirtschaftungsweise der ‚Whedos’ und deren jüngsten Entwicklungen in diesem Gebiet zu erlangen. Ein Einblick in die ökologischen, aber auch soziologischen and ökonomischen Aspekte ist die Grundlage für die Fortentwicklung dieser extensiven traditionellen Fischerei in eine ertragsreichere semi-intensive Fischzucht. Im Rahmen dieser Recherche wurden die Eigenschaften der ‚Whedos’ im Bezug auf die Art und Dauer der Überschwemmung untersucht. Mit dem Rückgang der Flut werden die Fischlöcher gewöhnlich von zahlreichen Hydato- und Tenagophyten überwuchert, wobei der Grad des Schwimmpflanzenbewuchses positiv mit dem Nährstoffgehalt des Wassers korrelierte. Die meisten Fischlöcher zeigten eine, mit fortschreitender Regenzeit abnehmende Wasserqualität. Schlechte Wasserqualität, vor allem geringe Sauerstoffkonzentrationen und hohe Salz- und Nitritgehalte, wurde als der bestimmende Faktor für das Vorkommen der Fischarten in den ‚Whedos’ während der Trockenzeit identifiziert. Die Fischdiversität nimmt mit zunehmender Verschlechterung der Wasserqualität signifikant ab und dienen nur noch Arten als Habitat, die an schlechte Wasserqualität speziell angepasst sind. Die häufigsten Arten waren Clarias gariepinus, Heterotis niloticus, Oreochromis niloticus L., Hemichromis c.f. letourneauxi, Polypterus senegalus und Epiplatys spilargyreius. Zusätzlich beschäftigte sich diese Arbeit auch mit der Fischdiversität der Flüsse Niger und Sota. In diesem Rahmen wurden für drei Fischarten Verbreitunglücken geschlossen und für drei weitere Arten deren bereits bekanntes Verbreitungsgebiet erweitert. Im Gegensatz dazu konnte jedoch auch festgestellt werden, dass ehemals stark vertretende Fischarten aus den Fängen der Fischer verschwunden sind. Der Zeitpunkt der Befischung hängt im Allgemeinen von der Flutintensität, der Lage des Fischloches innerhalb des Überflutungsgebietes und auch von den Marktpreisen ab, wobei die meisten Ernten zwischen Februar und April, kurz vor Beginn der nächsten Regenzeit im Mai, stattfanden. Der durchschnittliche Biomasseertrag, basierend auf den Werten der einzelnen ‚Whedos’ betrug 17 Tonnen im Jahre 2008 und 8,6 Tonnen im Jahre 2009. Um die Wachstumsraten der Fische zu verbessern wurden zwei unterschiedliche Fütterungsversuche durchgeführt. Erdnusspresskuchen, Fischabfälle, Reisspelzen, Blutmehl und Azolla-Mehl wurden in verschiedenen Zusammensetzungen und Anteilen als Grundlage der Futtermittel verwendet. Die Futtermittel mit einem Anteil von 10 bzw. 19 Prozent Blutmehl wurden von den Fischen während der gesamten Fütterungsperiode aktiv konsumiert und erzielten die höchsten Nettogewinne. Die Versuchsergebnisse zeigen deutlich, dass qualitativ hochwertige Materialien nicht als Ergänzungsfutter geeignet sind, da die geringen Marktpreise für Fisch die zusätzlichen Kosten nicht decken können. Anstatt qualitativ hochwertigem Ergänzungsfutter sollten die Besitzer Materialien bevorzugen, die kostenlos bzw. günstig und zudem einfach zu verarbeiten sind. Das Ergänzungsfutter mit einem Blutmehlgehalt von 19 Prozent erzielte, im Vergleich zur gewöhnlichen Fütterung mit Reisspelzen, einen zweimal höheren Nettogewinn. Das zusätzlich erwirtschaftete Nebeneinkommen könnte somit zu einem verbesserten Lebensunterhalt der Besitzer beitragen. Obwohl sich das ‚Whedo’-System noch in seinen Anfängen befindet, wird es von der ländlichen Bevölkerung aufgrund ihrer Erfahrungen bezüglich der Fischerei in den Überflutungsgebieten und der geringen Installationskosten, hoch geschätzt und weiter ausgebaut. KW - Aquakultur KW - Extensivtierhaltung KW - Clarias gariepinus KW - Benin KW - Aquakultur KW - Whedos KW - Benin KW - extensive Fischerei-Systeme KW - Clarias gariepinus KW - Aquaculture KW - Whedos KW - Benin KW - extensive fishery KW - Clarias gariepinus Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-57711 ER - TY - INPR A1 - Nassourou, Mohamadou T1 - Design and Implementation of a Model-driven XML-based Integrated System Architecture for Assisting Analysis, Understanding, and Retention of Religious Texts:The Case of The Quran N2 - Learning a book in general involves reading it, underlining important words, adding comments, summarizing some passages, and marking up some text or concepts. Once deeper understanding is achieved, one would like to organize and manage her/his knowledge in such a way that, it could be easily remembered and efficiently transmitted to others. This paper discusses about modeling religious texts using semantic XML markup based on frame-based knowledge representation, with the purpose of assisting understanding, retention, and sharing of knowledge they contain. In this study, books organized in terms of chapters made up of verses are considered as the source of knowledge to model. Some metadata representing the multiple perspectives of knowledge modeling are assigned to each chapter and verse. Chapters and verses with their metadata form a meta-model, which is represented using frames, and published on a web mashup. An XML-based annotation and visualization system equipped with user interfaces for creating static and dynamic metadata, annotating chapters’ contents according to user selected semantics, and templates for publishing generated knowledge on the Internet, has been developed. The system has been applied to the Quran, and the result obtained shows that multiple perspectives of information modeling can be successfully applied to religious texts, in order to support analysis, understanding, and retention of the texts. KW - Wissensrepräsentation KW - Wissensmanagement KW - Content Management KW - XML KW - Koran KW - Knowledge representation KW - Meta-model KW - Frames KW - XML model KW - Knowledge Management KW - Content Management KW - Quran Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-65737 ER - TY - INPR A1 - Nassourou, Mohamadou T1 - Design and Implementation of Architectures for Interactive Textual Documents Collation Systems N2 - One of the main purposes of textual documents collation is to identify a base text or closest witness to the base text, by analyzing and interpreting differences also known as types of changes that might exist between those documents. Based on this fact, it is reasonable to argue that, explicit identification of types of changes such as deletions, additions, transpositions, and mutations should be part of the collation process. The identification could be carried out by an interpretation module after alignment has taken place. Unfortunately existing collation software such as CollateX1 and Juxta2’s collation engine do not have interpretation modules. In fact they implement the Gothenburg model [1] for collation process which does not include an interpretation unit. Currently both CollateX and Juxta’s collation engine do not distinguish in their critical apparatus between the types of changes, and do not offer statistics about those changes. This paper presents a model for both integrated and distributed collation processes that improves the Gothenburg model. The model introduces an interpretation component for computing and distinguishing between the types of changes that documents could have undergone. Moreover two architectures implementing the model in order to solve the problem of interactive collation are discussed as well. Each architecture uses CollateX library, and provides on the one hand preprocessing functions for transforming input documents into CollateX input format, and on the other hand a post-processing module for enabling interactive collation. Finally simple algorithms for distinguishing between types of changes, and linking collated source documents with the collation results are also introduced. KW - Softwarearchitektur KW - Textvergleich KW - service based software architecture KW - service brokerage KW - interactive collation of textual variants KW - Gothenburg model of collation process Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-56601 ER - TY - THES A1 - Haddad, Dana T1 - Design of oncolytic viruses for the imaging and treatment of cancer: The vaccinia construct GLV-1h153 carrying the human sodium iodide symporter T1 - Design onkolytischer Viren zur Bildgebung und Therapie von Krebserkrankungen: Das Vaccinia-Konstrukt GLV-1h153 als Träger des menschlichen Natriumjodid Symporters N2 - Therapien mittels replikations-kompetenter onkolytischer Viren zeigten bereits vielversprechende Erfolge in klinischen Studien zur Bekämpfung verschiedener Krebserkrankungen. Die Viren sind in der Lage, sich präferentiell und selektiv in Krebszellen zu vermehren, wodurch das Tumorgewebe durch Zelllyse zerstört, das gesunde Gewebe jedoch nicht geschädigt wird. Biopsien sind zurzeit der Gold-Standard zur Überwachung onkolytischer Virus Therapien. In der präklinischen und frühen klinischen Phasen ist dies auch durchführbar, doch für weitere Studien am Menschen werden Methoden benötigt, die eine nicht-invasive Überwachung der Therapie ermöglichen. Das Nachverfolgen der Viren könnte Klinikern die Möglichkeit geben, die Verteilung der Viren im Körper nachzuverfolgen, die Effizienz und therapeutische Effekte zu korrelieren bzw. die mögliche virale Toxizität zu überwachen. Im Fokus dieser Arbeit stand die Konstruktion und das Austesten des VACV Stamms GLV-1h153, welches das Gen für den humanen Natrium-Iodid-Symporter (hNIS) kodiert, das als Reportergen für nicht-invasive bildgebende Nachverfolgung der Viren diente. Demzufolge diente das hier vorgestellte Projekt der Entwicklung von Bildgebungsverfahren, die in der onkolytischen Virustherapie eingesetzt werden können. Weiterhin sollte als weitere Strategie zur Krebsbekämpfung die Möglichkeit untersucht werden, mit Unterstützung der Viren eine gezielte Radiotherapie durchzuführen. Bei hNIS handelt es sich um ein intrinsisches Membranprotein welches den aktiven Transport und die Anreicherung von Iodid in Schilddrüsenzellen und einigen anderen Geweben vermittelt. Zudem wird das Gen, neben einigen anderen humanen Genen, bereits in präklinischen Studien als Reportergen verwendet und wurde in klinischen Studien bereits zur Darstellung von Viren in Prostata-Krebspatienten benutzt. Der Transfer des hNIS-kodierenden Gens mittels viraler Vektoren könnte es ermöglichen, dass infizierte Tumorzellen Träger-freie Radionuklidproben wie z.B. Iodid-124 (124I), Iodid-131 (131I), und 99m-Technecium Pertechtenate (99mTcO4), anreichern, welche schon lange für die Verwendung am Menschen zugelassen sind. Weitere Vorteile bei der Verwendung von hNIS als Reportergen humanen Ursprungs sind zum einen seine minimale Immunogenität und zum anderen die intrazelluläre Signalamplifikation durch die Transportfunktion des Systems. Der Stamm GLV1h153 wurde in der Pankreas-Adenokarzinom Zelllinie PANC-1 getestet. GLV-1h153 konnte diese Zellen infizieren, sich in ihnen replizieren und sie in Zellkultur schließlich ebenso effizient abtöten wie GLV-1h68. Zudem wurde eine Dosis-abhängige Expression von hNIS in infizierten Zellen nachgewiesen. Immunfluoreszenzanalysen bestätigten den erfolgreichen Transport des Proteins an die Zellmembran bevor die Zelllyse stattfand, was die Zeit- und Dosis-abhängigen Aufnahme von 131I verstärkte. In vivo war GLV-1h153, ebenso wie GLV-1h68, sicher und führte zu einer effektiven Regression der Pankreasxenograft Tumoren. Die Infektion des Tumors wurde weiterhin durch optische Bildgebung und histologische Untersuchungen bestätigt. GLV-1h153 ermöglichte weiterhin die Bildgebung von Viren in Tumoren mittels 124I-abhängiger Positronen-Emissions-Tomographie (PET) sowie 99m-Technecium Pertechnat-abhängiger (99mTcO4) Gamma Szintigraphie. Die Darstellung konnte sowohl mit intratumoral, wie auch mit intravenös applizierten Viren erfolgen, war quantitativ, und die Radiotracer konnten bis zu 24 bzw. sogar 48 h nach deren Injektion nachgewiesen werden. Die quantitative Analyse der Radionuklidaufnahme aus PET-Bildgebungsdaten korrelierte mit den Daten der Bioverteilungsdaten aus isolierten Gewebn. Autoradiographische Untersuchungen von GLV-1h153 infizierten Tumoren zeigten, dass das Vorhandensein von Viren (visualisiert durch die viral vermittelte GFP Expression), lebendes Gewebe und ausreichender Blutfluss benötigt werden, um die Aufnahme des Radiotracers in den Tumor zu erhöhen. Dosimetrische Analysen infizierter Tumoren zeigten das Potential für eine systemisch applizierte Radiotherapie des Tumors auf. So führte eine Kombination aus GLV-1h153 mit 131I-Behandlung zu geringfügig besseren therapeutischen Erfolgen, als eine alleinige Therapie mit GLV-1h153. Zusammengefasst, ist GLV-1h153 demnach ein vielversprechender Kandidat zur Behandlung von Bauchspeicheldrüsenkrebs und zur nichtinvasiven Bildgebung der viralen Therapie. Die Ergebnisse untermauern die Notwendigkeit weiterer Untersuchungen und Entwicklungen in der Langzeitverfolgung viraler Therapien sowie synergistischer Effekte einer Radioiod-Kombinationstherapie mit dieser neuen therapeutischen und bildgebenden Substanzklasse. N2 - Replication-competent oncolytic viral therapies have shown great promise preclinically and in clinical trials for the treatment of various cancers. They are able to preferentially and selectively propagate in cancer cells, consequently destroying tumor tissue via cell lysis, while leaving noncancerous tissues unharmed. Currently, biopsy is the gold standard for monitoring of viral tumor colonization and oncolysis. This may be feasible in preclinical or early clinical trials; however, a noninvasive method facilitating ongoing monitoring of viral therapy is needed for human studies. The tracking of viral delivery could give clinicians the ability to assess the biodistribution of oncolytic viruses to ensure safety and correlation with treatment efficacy. This work centers on the construction and testing of a VACV strain, GLV-1h153, carrying the human sodium iodide symporter (hNIS) as a marker gene for non-invasive tracking of virus by imaging. Thus, this project aimed to help develop imaging techniques for use in clinical trials of oncolytic viral therapy. Further, the feasibility and effectiveness of virally induced targeted radiotherapy as an anti-cancer strategy was also investigated. hNIS is an intrinsic plasma membrane protein which mediates the active transport and concentration of iodide in the thyroid gland and some extra-thyroidal tissues. It is also one of several human genes currently being used as reporters in preclinical studies and has already been used in clinical studies for imaging viral replication in prostate cancer. hNIS gene transfer via viral vector may allow infected tumor cells to concentrate several carrier-free radionuclide probes such as Iodide-124 (124I), Iodide-131 (131I), and 99m-Technecium Pertechtenate (99mTcO4), which have long been approved for human use. hNIS also has the advantage of being of human origin thus minimizing immunogenicity, and its transporter based system allows intracellular signal amplification. GLV-1h153 was tested in pancreatic adenocarcinoma cell line PANC-1. GLV-1h153 infected, replicated within, and killed PANC-1 cells in cell culture as efficiently as GLV-1h68 and provided dose-dependent levels of hNIS transgene expression in infected cells. Immunofluorescence detected successful transport of the protein to the cell membrane prior to cell lysis, which enhanced dose and time-dependent intracellular uptake of 131I. In vivo, GLV-1h153 was as safe and effective as GLV-1h68 in regressing pancreatic cancer xenografts. Tumor infection by virus was confirmed via optical imaging and histology. GLV-1h153 further facilitated deep tissue imaging of virus replication in tumors via Iodide-124I positron emission tomography (PET) as well as 99mTcO4-mediated gamma scintigraphy. This was possible with both intratumoral and intravenous injection of the virus with radiouptake retained as long as 24 and 48 hours after radiotracer injection. PET image quantitation of radiouptake in tumors was found to correlate well with tissue radiouptake counts. Autoradiography of GLV-1h153-infected tumors revealed a need for presence of virus (visualized with green fluorescent protein expression), viable tissue, and adequate blood flow to enhance radiouptake in tumors. Dosimetric analysis of uptake in infected tumors displayed potential for therapeutic doses of radiotherapy to be delivered systemically to tumors. When GLV-1h153 was combined with 131I for treatment, a modest additive effect was seen as compared to GLV-1h153 alone. Therefore, GLV-1h153 is a promising new candidate for treating pancreatic cancer and noninvasively imaging viral therapy. These findings warrant further investigation into possible long term monitoring of viral therapy, as well as synergistic or additive effects of radioiodine combined with this novel treatment and imaging modality. KW - Onkolyse KW - Vaccinia-Virus KW - Bauchspeicheldrüsenkrebs KW - Bildgebendes Verfahren KW - onkolytische Viren KW - Vaccinia Virus KW - Pankreaskrebs KW - humaner Natrium-Iodid-Symporter KW - Positronen-Emissions-Tomographie KW - gezielte Radiotherapie KW - Oncolytic Virus KW - Vaccinia Virus KW - Cancer of Pancreas KW - Human sodium iodide symporter KW - Positron Emission Tomography KW - Targeted Radiotherapy Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-56441 ER - TY - JOUR A1 - Kaiser, J. C. A1 - Riemer, N. A1 - Knopf, D. A. T1 - Detailed heterogeneous oxidation of soot surfaces in a particle-resolved aerosol model N2 - Using the particle-resolved aerosol model PartMC-MOSAIC, we simulate the heterogeneous oxidation of a monolayer of polycyclic aromatic hydrocarbons (PAHs) on soot particles in an urban atmosphere. We focus on the interaction of the major atmospheric oxidants (O3, NO2, OH, and NO3) with PAHs and include competitive co-adsorption of water vapour for a range of atmospheric conditions. For the first time detailed heterogeneous chemistry based on the P¨oschl-Rudich-Ammann (PRA) framework is modelled on soot particles with a realistic size distribution and a continuous range of chemical ages. We find PAH half-lives, 1/2, on the order of seconds during the night, when the PAHs are rapidly oxidised by the gas-surface reaction with NO3. During the day, 1/2 is on the order of minutes and determined mostly by the surface layer reaction of PAHs with adsorbed O3. Such short half-lives of surface-bound PAHs may lead to efficient conversion of hydrophobic soot into more hygroscopic particles, thus increasing the particles’ aerosol-cloud interaction potential. Despite its high reactivity OH appears to have a negligible effect on PAH degradation which can be explained by its very low concentration in the atmosphere. An increase of relative humidity (RH) from 30% to 80% increases PAH half-lives by up to 50%for daytime degradation and by up to 100% or more for nighttime degradation. Uptake coefficients, averaged over the particle population, are found to be relatively constant over time for O3 (2×10-7 to 2×10-6) and NO2 (5×10-6 to 10-5) at the different levels of NOx emissions and RH considered in this study. In contrast, those for OH and NO3 depend strongly on the surface concentration of PAHs. We do not find a significant influence of heterogeneous reactions on soot particles on the gas phase composition. The derived half-lives of surfacebound PAHs and the time and particle population averaged uptake coefficients for O3 and NO2 presented in this paper can be used as parameterisations for the treatment of heterogeneous chemistry in large-scale atmospheric chemistry models. KW - Physik Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-75440 ER - TY - THES A1 - Schneider, Christof T1 - Detecting the influence of different potential stress factors on the behavior of the honeybee Apis mellifera using Radiofrequency Identification (RFID) T1 - Erfassung des Einflusses von unterschiedlichen Stressfaktoren auf das Verhalten der Honigbiene Apis mellifera mittels Radiofrequenz Identifikation (RFID) N2 - This study was conducted to determine the influence of different stress factors on the honeybee Apis mellifera. The investigation was motivated by previous experiments that suggested the existence of an unspecific defense mechanism causing a generalized change of flight behavior after the onset of different diseases. This mechanism is thought to impede the ability of flight bees to return to their respective colonies thereby removing the disease from the colony over time. During the last years, the existence of such a “suicidal behavior” was supported by further studies. Thus, an unnoticed, potentially highly effective defense mechanism of social insects was revealed whose spectrum of activity and physiological basics require further investigation. Suggesting that the reaction by the bees is unspecific to different diseases as well as to other potential stress factors, this study was designed to investigate the influence of pathogens, insecticides, and different brood rearing temperatures on different parameters like lifespan, foraging activity, and foraging trip duration of worker bees. N2 - Im Rahmen dieser Studie wurden Untersuchungen bezüglich der Auswirkungen von unterschiedlichen Belastungsfaktoren auf die Honigbiene Apis mellifera durchgeführt. Hintergrund waren Vermutungen, die nahe legten, dass Bienen auf Parasiten und Pathogene durch eine generalisierte Verhaltensänderung reagieren, die die Rückkehr der Bienen in das Volk behindert und damit Krankheit nach und nach aus dem Volk entfernt. Die Existenz eines solchen „suizidalen Verhaltens“ wurde zwischenzeitlich durch weitere Untersuchungen unterstützt. Hiermit wurde ein bislang unbeachteter und potentiell hochwirksamer Abwehrmechanismus sozialer Insekten gegen Pathogene und Parasiten aufgedeckt, dessen Wirkspektrum und physiologische Grundlagen noch erheblichen Aufklärungsbedarf haben. Es lag nun nahe, eine allgemeine und unspezifische Reaktion auf Stressfaktoren zu vermuten. In dieser Studie sollte daher der Einfluss von Pathogenen, Insektiziden sowie unterschiedlichen Brutaufzuchtbedingungen auf die Aktivität, das Flugverhalten und das Sammelverhalten messbar gemacht und untersucht werden. KW - Biene KW - Bienenkrankheit KW - Stress KW - Verhalten KW - Carnica-Biene KW - Nosema KW - Nosema apis KW - Imidacloprid KW - Bienenbrut KW - honey bee KW - imidacloprid KW - clothianidin KW - coumaphos KW - Nosema KW - brood development KW - behavioral change KW - RFID KW - radiofrequency identification Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-71344 ER - TY - THES A1 - Ehses, Philipp T1 - Development of new Acquisition Strategies for fast Parameter Quantification in Magnetic Resonance Imaging T1 - Entwicklung neuer Aufnahmeverfahren zur schnellen Parameterbestimmung in der Magnetresonanztomographie N2 - Magnetic resonance imaging (MRI) is a medical imaging method that involves no ionizing radiation and can be used non-invasively. Another important - if not the most important - reason for the widespread and increasing use of MRI in clinical practice is its interesting and highly flexible image contrast, especially of biological tissue. The main disadvantages of MRI, compared to other widespread imaging modalities like computed tomography (CT), are long measurement times and the directly resulting high costs. In the first part of this work, a new technique for accelerated MRI parameter mapping using a radial IR TrueFISP sequence is presented. IR TrueFISP is a very fast method for the simultaneous quantification of proton density, the longitudinal relaxation time T1, and the transverse relaxation time T2. Chapter 2 presents speed improvements to the original IR TrueFISP method. Using a radial view-sharing technique, it was possible to obtain a full set of relaxometry data in under 6 s per slice. Furthermore, chapter 3 presents the investigation and correction of two major sources of error of the IR TrueFISP method, namely magnetization transfer and imperfect slice profiles. In the second part of this work, a new MRI thermometry method is presented that can be used in MRI-safety investigations of medical implants, e.g. cardiac pacemakers and implantable cardioverter-defibrillators (ICDs). One of the major safety risks associated with MRI examinations of pacemaker and ICD patients is RF induced heating of the pacing electrodes. The design of MRI-safe (or MRI-conditional) pacing electrodes requires elaborate testing. In a first step, many different electrode shapes, electrode positions and sequence parameters are tested in a gel phantom with its geometry and conductivity matched to a human body. The resulting temperature increase is typically observed using temperature probes that are placed at various positions in the gel phantom. An alternative to this local thermometry approach is to use MRI for the temperature measurement. Chapter 5 describes a new approach for MRI thermometry that allows MRI thermometry during RF heating caused by the MRI sequence itself. Specifically, a proton resonance frequency (PRF) shift MRI thermometry method was combined with an MR heating sequence. The method was validated in a gel phantom, with a copper wire serving as a simple model for a medical implant. N2 - Die Magnetresonanztomographie (MRT) zeichnet sich als medizinisches Bildgebungsverfahren dadurch aus, dass sie ohne ionisierende Strahlung auskommt und nicht-invasiv einsetzbar ist. Ein weiterer wichtiger - wenn nicht der wichtigste - Grund für die weite und wachsende Verbreitung der MRT in der klinischen Praxis ist ihr interessantes und hoch-flexibles Kontrastverhalten, und damit die gute Darstellbarkeit biologischen Gewebes. Die Hauptnachteile der MRT sind die, verglichen mit z.B. Computer-Tomographie (CT), langen Messzeiten und die damit direkt verbundenen hohen Untersuchungskosten. Der erste Teil dieser Arbeit beschreibt Verbesserungen der IR TrueFISP Methode zur MR-Parameterbestimmung. IR TrueFISP ist eine schnelle Methode zur gleichzeitigen Quantifizierung der Protonendichte, der longitudinalen Relaxationszeit T1, sowie der transversalen Relaxationszeit T2. In Kapitel 2 dieser Arbeit wird eine Methode zur Beschleunigung der IR TrueFISP Quantifizierung vorgestellt, die es erlaubt einen kompletten Relaxometrie-Datensatz in unter 6 s pro Schicht aufzunehmen. Weiterhin werden in Kapitel 3 zwei allgemeine Fehlerquellen der IR TrueFISP Methode untersucht und Korrekturverfahren vorgestellt. Im zweiten Teil dieser Arbeit werden neuartige MR-Thermometrie Methoden vorgestellt, die sich besonders zur Untersuchung der MR-Sicherheit von medizinischen Implanten, insbesondere Herzschrittmachern und implantierbaren Kardioverter-Defibrillatoren (ICDs), eignen. Momentan sind in den allermeisten Fällen MRT Untersuchungen an Herzschrittmacher- und ICD-Patienten aufgrund der damit verbundenen Risiken kontraindiziert. Das dabei am schwierigste in den Griff zu bekommende und damit größte Risiko ist die mögliche Schädigung des Myokards, hervorgerufen durch die von den geschalteten HF-Feldern induzierten Ströme in den Schrittmacherelektroden. Um eine MR-sichere Elektrode und/oder sichere Messprotokole zu entwickeln ist es notwendig viele verschiedene Elektroden, Elektrodenpositionen und Messparameter-Einstellungen in einem körperähnlichen Gel-Phantom untersucht. Die bei der jeweiligen Messung auftretenden Erhitzungen werden dabei meist mit Hilfe fiberoptischer Thermometer an verschiedenen Positionen im Gel gemessen. Eine Alternative ist die Aufnahme einer globalen Karte der Temperaturerhöhung mit Hilfe der MR-Thermometrie. In dieser Arbeit wird eine Messmethode vorgestellt, die MR-Thermometrie mit HF induziertem Heizen kombiniert. Diese Methode wurde an einem Kupferdraht im Gelphantom validiert und mit fiberoptisch gemessenen Temperaturanstiegen verglichen. KW - Kernspintomografie KW - Messprozess KW - Relaxometrie KW - Thermometrie KW - nicht-kartesische Bildgebung KW - Relaxometry KW - Thermometry KW - non-Cartesian imaging KW - Optimierung KW - MRI KW - NMR-Tomographie Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-72531 ER - TY - THES A1 - Rodamer, Michael T1 - Development of practice-oriented LC-MS/MS methods for the determination of important drugs and their application for building PK/PD concepts T1 - Die Verwendung von praxisorientierten LC-MS/MS Methoden für die Bestimmung von wichtigen Arzneistoffen und ihre Verwendung zur Erstellung von PK/PD Konzepten N2 - In this thesis eight robust and reliable LC-MS/MS methods were developed and validated to analyze atorvastatin, clopidogrel, furosemide, itraconazole, loratadine, naproxen, nisoldipine and sunitinib in human plasma. The active metabolites 2-hydroxyatorvastatin, 4-hydroxyatorvastatin, hydroxyitraconazole, descarboethoxy-loratadine, 4-hydroxynisoldipine and N-desethylsunitinib were also included in the corresponding methods. Due to the different physical, chemical and pharmacokinetic properties of the analytes a wide spectrum regarding sample preparation techniques, chromatography and mass spectrometric detection was covered. Protein precipitation methods were developed for furosemide, itraconazole, naproxen, nisoldipine and sunitinib. Liquid-liquid extraction methods were developed for atorvastatin, clopidogrel and loratadine. Criteria to choose protein precipitation or liquid-liquid extraction were the final plasma concentrations of the drugs, which are mainly dependant on the dose, bioavailability and t1/2 and of course cost-effectiveness. Altogether, the methods have a concentration range from 0.001 ng/mL (LLOQ of clopidogrel) to 50000 ng/mL (highest calibration point for naproxen), covering 5 x 107 orders of magnitude. The runtime of the methods ranged from 2 to 4 minutes, facilitating a high sample throughput. All developed methods were validated according to recent guidelines as they were used to analyze sampes from clinical trials. Excellent linearity, intra-day and inter-day precision and accuracy were observed in the validated calibration ranges. Hemolyzed, lipemic and different batches of human plasma as well as sample dilution did not affect the determiantion of the analytes. Clopidogrel, loratadine, nisoldipine and sunitinib and if available their metabolites were subjected to a matrix effect test, resulting in no influence of different batches of human plasma on the analytical methods. Noteworthy is clopidogrel that shows a slight effect on one of the two used mass spectrometers. However, that effect was reproducible and did therefore not affect clopidogrel determination. No evidence of instability during chromatography, extraction and sample storage processes for all analytes except 4-hydroxyatorvastatin was found, for which a significant decrease was observed after three months. During incurred sample reanalysis of study samples 95 % of the samples were within ±15 % with respect to the first analysis. Moreover, the atorvastatin, loratadine and clopidogrel method were compared on two generations of triple quadrupole mass spectrometers, the API 3000™ and the API 5000™. The new ion source and the changes in the ion path of the API 5000™ provided higher sensitivity, the extend depending on the substance. However, the API 3000™ had very good precision in the performed system comparison. The validated methods showed excellent performance and quality data during routine sample analysis of eight clinical trials. Moreover, they are suitable for high sample throughput due to their short run times. N2 - In dieser Dissertation wurden acht robuste und verlässliche LC-MS/MS-Methoden zur Analyse von Atorvastatin, Clopidogrel, Furosemid, Itraconazol, Loratadin, Naproxen Nisoldipin und Sunitinib in Humanplasma entwickelt und validiert. Außerdem enthalten die Methoden die aktiven Metaboliten 2-Hydroxyatorvastatin, 4-Hydroxyatorvastatin, Hydroxyitraconazol, Descarboethoxyloratadin, 4-Hydroxynisoldipin und N-Desethylsunitinib. Wegen der unterschiedlichen physikalischen, chemischen und pharmakokinetischen Eigenschaften der Analyten, deckt diese Arbeit ein weites Spektrum bezüglich Probenaufarbeitung, Chromatographie und Massenspektrometrie ab. Präzipitationsmethoden wurden für Furosemid, Itraconazol, Naproxen, Nisoldipin und Sunitinib entwickelt. Flüssig-flüssig-Extraktionen wurden für Atorvastatin, Clopidogrel und Loratadin entwickelt. Kriterien für die Auswahl von Präzipitation oder Extraktion waren die erwartete Plasmakonzentration, die im Wesentlichen von der Dosis, Bioverfügbarkeit und Halbwertszeit abhängig ist, und natürlich Kosteneffektivität. Insgesamt erstrecken sich die Methoden über einen Kalibrierbereich von 0.001 ng/mL (LLOQ von Clopidogrel) bis zu 50000 ng/mL (HLOQ von Naproxen), das entspricht 5x107 Größenordnungen. Die Laufzeiten pro Probe liegen im Bereich von zwei bis vier Minuten, was einen sehr hohen Probendurchsatz ermöglicht. Alle in dieser Arbeit entwickelten Methoden wurden gemäß aktueller Richtlinien (FDA, GLP) validiert und verwendet um Proben aus Pharmakokinetikstudien zu analysieren. Ausgezeichnete Linearität, Präzision und Genauigkeit zeichnen diese Methoden aus. Hämolysiertes, lipämisches und verschiedene Batches von Humanplasma, sowie Vorverdünnung hatten bei keiner Methode Einfluss auf die Bestimmung der Analyten. Clopidogrel, Loratadin, Nisoldipin und Sunitinib und gegebenenfalls deren Metabolite wurden einem Matrix-Effekt-Test unterzogen. Dabei wurde festgestellt, dass keine der Methoden durch die Probenmatrix beeinflusst wurde. Erwähnenswert ist Clopidogrel, da an einem der Massenspektrometer ein leichter Effekt beobachtet werden konnte, der sich auf alle untersuchten Matrices gleich auswirkte und somit keinen Einfluss auf die gesamte Methode hatte. Weiterhin fand sich bei keiner der untersuchten Substanzen ein Hinweis auf Instabilität während der Probenlagerung, -aufarbeitung und -messung, außer bei 4-Hydroxyatorvastatin, dessen Konzentration nach drei Monaten signifikant abnahm. Während der Reanalyse von Studienproben (incurred samples) lagen über 95 % der Proben innerhalb von ±15 % im Vergleich zur ersten Messung. Außerdem wurden die Methoden zur Bestimmung von Atorvastatin, Loratadin und Clopidogrel an zwei Generationen von Massenspektrometern verglichen, nämlich dem API 3000™ und dem API 5000™. Die neue Ionenquelle und die Verbesserungen im Ionenpfad beim API 5000™ ermöglichten - abhängig von der analysierten Substanz - höhere Sensitivität. Allerdings konnte das API 3000™ bei den durchgeführten Experimenten mit einer hohen Präzision aufwarten. Die validierten Methoden zeigten im Alltagbetrieb bei der Messung von acht klinischen Studien hervorragende Performance und Qualitätsdaten. Darüber hinaus sind die Methoden aufgrund ihrer kurzen Laufzeiten ideal für Messungen die einen hohen Probendurchsatz erfordern. KW - LC-MS KW - Validierung KW - Tandem-Massenspektrometrie KW - Bioanalytik KW - Klinische Studie KW - LC-MS/MS KW - Tandem Mass Spectrometry KW - Method Validation KW - Pharmacokinetics Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-70809 ER - TY - JOUR A1 - Rogoll, Dorothee A1 - Schauber, Jürgen A1 - Mheta, Koy K. A1 - Stich, August A1 - Scheppach, Wolfgang T1 - Differential Cathelicidin Expression in Duodenal and Gastric Biopsies from Tanzanian and German Patients JF - PLoS One N2 - Background Epithelial surfaces such as the gastrointestinal mucosa depend on expression of antimicrobial peptides like cathelicidin for immune defence against pathogens. The mechanisms behind mucosal cathelicidin regulation are incompletely understood. Methods Cathelicidin expression was analysed in duodenal, antral and corpus/fundic mucosal biopsies from African and German patients. Additionally, cathelicidin expression was correlated with Helicobacter pylori (HP) infection and the inflammatory status of the mucosa. Results High cathelicidin transcript abundance was detected in duodenal biopsies from African subjects. On the contrary, cathelicidin mRNA expression was either undetectable or very low in tissue specimens from German patients. Also, in the antrum and corpus/fundus regions of the stomach significantly higher cathelicidin transcript levels were measured in Tanzanian compared to German patients. In gastric biopsies from African patients cathelicidin expression was increased in HP positive compared to HP negative subjects. Additionally, the inflammatory status measured by IL-8 expression correlated well with the HP infection status. Conclusions A higher duodenal and gastric cathelicidin expression in African (compared with European) individuals may be due to upregulation by antigenic stimulation and may confer a higher resistance against enteric infections. KW - messenger RNA KW - german people KW - gastrointestinal tract KW - gastrointestinal infections KW - africans KW - antimicrobials KW - biopsy KW - helicobacter pylori infection Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-137970 VL - 6 IS - 7 ER - TY - THES A1 - Pillai, Deepu T1 - Differential effects of Pigment epithelium derived factor and epidermal growth factor on Ischemia-reperfusion injury in rats - a magnetic resonance imaging study at 3 tesla T1 - Unterschiedlichen Wirkungen von PEDF und EGF auf Ischämie-Reperfusionsschaden bei Ratten - Eine Kernspintomografie studie bei 3 Tesla N2 - Stroke, after myocardial infarction and cancer is the third most common cause of death worldwide and 1/6th of all human beings will suffer at least one stroke in their lives. Furthermore, it is the leading cause for adult disability with approximately one third of patients who survive for the next 6 months are dependent on others. Because of its huge socioeconomic burden absorbing 6% of all health care budgets and with the fact that life expectancy increases globally, one can assume that stroke is already, and will continue to be, the most challenging disease. Ischemic stroke accounts for approximately 80% of all strokes and results from a thrombotic or embolic occlusion of a major cerebral artery (most often the middle cerebral artery, MCA) or its branches Following acute ischemic stroke, the most worrisome outcome is the rapidly increasing intra-cranial pressure due to the formation of space-occupying vasogenic oedema which can have lethal consequences. Permeability changes at the Blood-Brain Barrier (BBB) usually accompanies the oedematous development and their time course can provide invaluable insight into the nature of the insult, activation of compensatory mechanisms followed by long term repair. Rodent models of focal cerebral ischemia have been developed and optimized to mimic human stroke conditions and serve as indispensable tools in the field of stroke research. The presented work constituting of three separate but complete works by themselves are sequential, where, the first part was dedicated to the establishment of non-invasive small animal imaging strategies on a 3 tesla clinical magnetic resonance scanner. This facilitated the longitudinal monitoring of pathological outcomes following stroke where identical animals can serve as its own control. Tissue relaxometric estimations were carried out initially to derive the transverse (T2), longitudinal (T1) and the transverse relaxation time due to magnetic susceptibility effects (T2*) at the cortical and striatal regions of the rodent brain. Statistically significant differences in T2*-values could be found between the cortex and striatal regions of the rodent brain. The derived tissue relaxation values were considered to modify the existing imaging protocols to facilitate the study of the rodent model of ischemic stroke. The modified sequence protocols adequately characterized all the clinically relevant sequels following acute ischemic stroke, like, the altered perfusion and diffusion characteristics. Subsequent to this, serial magnetic resonance imaging was performed to investigate the temporal and spatial relationship between the biphasic nature of BBB opening and, in parallel, the oedema formation after I/R injury in rats. T2-relaxometry for oedema assessment was performed at 1 h after ischemia, immediately following reperfusion, and at 4, 24 and 48 hours post reperfusion. Post-contrast T1-weighted imaging was performed at the last three time points to assess BBB integrity. The biphasic course of BBB opening with significant reduction in BBB permeability at 24 hours after reperfusion was associated with a progressive expansion of leaky BBB volume, accompanied by a peak ipsilateral oedema formation. At 48 hours, the reduction in T2-value indicated oedema resorption accompanied by a second phase of BBB opening. In addition, at 4 hours after reperfusion, oedema formation could also be detected at the contralateral striatum which persisted to varying degrees throughout the study, indicative of widespread effects of I/R injury. The observations of this study may indicate a dynamic temporal shift in the mechanisms responsible for biphasic BBB permeability changes, with non-linear relations to oedema formation. Two growth factor peptides namely pigment epithelium derived factor (PEDF) and epidermal growth factor (EGF) with widely different trophic properties were considered for their beneficial effects, if any, in the established rodent model of I/R injury and studied up to one week employing magnetic resonance imaging. Both the selected, trophic factors demonstrated significant neuroprotection as demonstrated by a reduction in infarct volume, even though PEDF was found to be the most potent one. PEDF also demonstrated significant attenuation of oedema formation in comparison to both the control and EGF groups, even though EGF could also demonstrate oedema suppression. In the present work, we noticed that interventions with macromolecule protein/peptides by itself could mediate remote oedema at distant sites even though the significance of such an observation is not clear at present. Susceptibility (T2*) weighted tissue relaxometric estimations were considered at the infarct region to detect any metabolic changes arising out of any neuroprotection and/or cellular proliferation / neurogenesis. PEDF group demonstrated a striking reduction of the T2*-values, which is indicative of an increased metabolic activity. Moreover, all the groups (Control, EGF and PEDF) demonstrated significantly elevated T2*-values at the contralateral striatum, which is indicative of widespread metabolic suppression usually associated with a variety of traumatic brain conditions. Moreover, as expected from the properties of PEDF, it demonstrated an extended BBB permeability suppression throughout the duration of the study. This study underlines the merits of considering non-invasive imaging strategies without which it was not possible to study the required parameters in a longitudinal fashion. All the observations are adequately supported by reasonably well defined mechanisms and needs to be further verified and confirmed by an immunohistochemical study. These results also need to be complemented by a functional study to evaluate the behavioural outcome of animals following these treatments. These studies are progressing at our laboratory and the results will be duly published afterwards. N2 - Schlaganfall ist nach Herzinfarkt und Krebs die dritthäufigste Todesursache weltweit und 1/6 aller Menschen erleiden mindestens einen Schlaganfall in ihrem Leben. Wichtiger ist jedoch, dass Schlaganfallerkrankungen ist die führende Ursache für dauerhafte Behinderungen darstellen. Ungefähr ein Drittel dieser Patienten, die die ersten 6 Monate überleben sind auf die Hilfe anderer angewiesen. Die enorme Wichtigkeit des Schlaganfalls begründet sich zudem dadurch, dass schon jetzt die sozioökonomischen Kosten 6% der gesamten Gesundheitausgaben betragen und die globale Lebenserwartung weiter steigen wird. Der ischämische Hirninfarkt ist der mit 80% vorherrschende Schlaganfalltyp und resultiert aus thrombotischen und embolischen Verschlüssen der großen hirnversorgenden Arterien und deren Ästen (insbesondere der A. cerbri media). Die wichtigste Komplikation mit hoher Mortalität nach einem ischämischen Schlaganfall ist Entwicklung eines raumfordernden vasogene Ödementwicklung. Änderungen der Permeabilität der Blut-Hirn Schranke (BHS) begleitet die Ödementwicklung und Analyse der zeitlichen BHS Permeabilität können wichtige Erkenntnisse über den natürlichen Verlauf eines Hirninfarkts und die Aktivierung kompensatorischer Mechanismen, die in Reparaturvorgänge münden, liefern. Verschiedene modelle des akuten ischämischen Schlaganfalls mit Nagetieren wurden entwickelt um die Schlaganfalltherapie des Menschen weiter zu entwickeln. Sie sind momentan unersetzliche Instrumente in der Schlaganfallforschung. Die hier vorgestellte Arbeitet setzt sich auch 3 abgeschlossenen sequentiellen Teilprojekten zusammen. Das erste Teilprojekt befasst mit der Etablierung von der nicht-invasiven Kleintierbildgebung auf einem klinischen 3 Tesla Kernspintomographen. Diese Arbeit bildet die Grundlage für das in vivo Monitoring der pathologischen Veränderungen nach Schlaganfall in einem identischen Versuchstier nachverfolgt werden kann und so die eigene Kontrolle darstellt. Gewebs relaxometrische Messungen wurden initial durchgeführt um die transverse (T2), longitudinal (T1) und transverse (T2*) Relaxationszeit (aufgrund der magnetischen Suszeptibilitätseffekte) in kortikalen und striatalen Hirnregionen der Nagetiere zu bestimmen. Statistisch signifikante Unterschiede in der T2*- Werte konnte zwischen der kortikalen und Striatalen Regionen des Gehirn von Nagetieren gefunden werden. Hierdurch konnten bestehende Messprotokolle vom Menschen auf die Nagetiere optimiert und für die Untersuchungen des Schlaganfalls genutzt werden. Diese Vorarbeiten erlauben klinisch relevante Veränderungen wie eine veränderte Diffusion und Perfusion nach ischämischen Schlaganfall zu verfolgen. Basierend auf diesen Vorarbeiten wurde die örtliche und zeitliche Charakterisierung der bi-phasischen BHS-Öffnung und der Ödementwicklung nach experimenteller I/R der Ratte mittels serieller Magnetresonanztomographie (MRT) untersucht. Hier diente die T2-Relaxometrie zur Ödemquantifizierung und wurde 1 Stunde nach Beginn der zerebralen Ischämie, unmittelbar nach Reperfusion und im Intervall von weiteren 4, 24 und 48 Stunden durchgeführt. Eine T1-gewichtete Sequenz wurde vor und nach Gabe von Kontrastmittel an den drei letztgenannten Zeitpunkten zeigte den bi-phasischen Verlauf der BHS-Öffnung 4 und 48 Stunden nach Reperfusion. Eine signifikante Reduktion der BHS Permeabilität 24 Stunden war zum einem mit einer Erhöhung des Gesamtvolumens der gestörten BHS und zum anderen mit Maximum der Ödementwicklung assoziiert. Darüber hinaus konnte 48 Stunden nach Reperfusion bereits eine Resorption des Ödems anhand der T2-Relaxometrie gemessen werden während die zweite Phase der bi-phasischen BHS-Öffnung auftrat. Zusätzlich trat 4 Stunden nach Reperfusion eine Ödembildung auch der nicht-ischämischen Striatum auf, welche in unterschiedlichem Maße über die Studiendauer persistierte. Dies spricht dafür, dass Ischämie und Reperfusion Effekte auf das gesamte Gehirn haben können. Zusammenfassend sprechen die Beobachtung dafür, dass der zeitlichen Entwicklung des Hirnödems verschiedene Mechanismen der erhöhten Blut-Hirn Schranken Permeabilität zu Grunde liegen. Zwei Wachstumsfaktoren, der, Pigment epithelium abstammende Wachstumsfaktor (PEDF) und der epidermale Wachstumsfaktor (EGF), mit deutlich unterschiedlichen trophischen Eigenschaften wurden auf ihre positiven Effekte im etablierten Tiermodel der zerebralen I/R hin untersucht. Dabei wurden serielle MRT Untersuchungen bis hin zu einer Woche genutzt. Beide Wachstumsfaktoren führten im Model zu einer signifikanten Neuroprotektion, die sich in einer Reduktion des Infarktvolumens gegenüber einer Kontrolle mit Kochsalz zeigte. PEDF allerdings hatte gegenüber EGF eine potentere Wirkung und zeigte darüber hinaus und noch deutlicher als EGF eine signifikante Verminderung der Ödembildung. Allerdings zeigte eine Behandlung mit diesen großmolekularen Proteinen zumindest nach 24 Stunden auch eine Neigung zur Ödembildung in vom Schlaganfall nicht betroffenen Hirnarealen, deren Signifikanz allerdings noch unklar ist. T2*- gewichtete Relaxationsmessungen können dazu genutzt werden, um metabolische Veränderungen, die aus neuroprotektiven Therapieansätzen bzw. zellulärer Proliferation bzw. Neurogenese entstehen, zu quantifizieren. Hier zeigten insbesondere mit PEDF behandelte Versuchstiere eine hochsignifikante Reduktion der T2*-Werte, welche als Hinweis auf eine erhöhte metabolische Aktivität gewertet werden können. Insgesamt zeigten alle Behandlungsgruppen (Kochsalzkontrollen, EGF und PEDF) behandelte Tiere signifikant erhöhte T2*-werte auf des kontralateralen Striatums, welche auf eine weitreichende metabolische Suppression hindeuten, wie sie normalerweise bei einer Reihe von traumatischen Hirnerkrankungen gefunden werden können. Ein weiterer Befund ist, wie erwartet, die ausgedehnte Verminderung der BHS-Durchgängigkeit durch PEDF über die gesamte Dauer der Untersuchung hinweg. Diese Studie unterstreicht den Nutzen nicht-invasiver Bildgebungsstrategien, ohne die die Untersuchung der benötigten Parameter in einem longitudinalen Design nicht möglich wäre. Ausblickend müssen diese gut mittels MRT charakterisierten Prozesse durch immunhistologische und funktionelle Untersuchungen gestützt und nachfolgend publiziert werden. KW - Schlaganfall KW - Ischemie KW - NMR-Tomographie KW - Epidermaler Wachstumsfaktor KW - MRI KW - MRI KW - Stroke KW - Ischemia KW - PEDF KW - EGF Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-57341 ER - TY - JOUR A1 - Van den Hove, Daniel A1 - Jakob, Sissi Brigitte A1 - Schraut, Karla-Gerlinde A1 - Kenis, Gunter A1 - Schmitt, Angelika Gertrud A1 - Kneitz, Susanne A1 - Scholz, Claus-Jürgen A1 - Wiescholleck, Valentina A1 - Ortega, Gabriela A1 - Prickaerts, Jos A1 - Steinbusch, Harry A1 - Lesch, Klaus-Peter T1 - Differential Effects of Prenatal Stress in 5-Htt Deficient Mice: Towards Molecular Mechanisms of Gene x Environment Interactions N2 - Prenatal stress (PS) has been shown to influence the development of the fetal brain and to increase the risk for the development of psychiatric disorders in later life. Furthermore, the variation of human serotonin transporter (5-HTT, SLC6A4) gene was suggested to exert a modulating effect on the association between early life stress and the risk for depression. In the present study, we used a 5-Htt6PS paradigm to investigate whether the effects of PS are dependent on the 5-Htt genotype. For this purpose, the effects of PS on cognition, anxiety- and depression-related behavior were examined using a maternal restraint stress paradigm of PS in C57BL6 wild-type (WT) and heterozygous 5-Htt deficient (5-Htt +/2) mice. Additionally, in female offspring, a genome-wide hippocampal gene expression profiling was performed using the Affymetrix GeneChipH Mouse Genome 430 2.0 Array. 5-Htt +/2 offspring showed enhanced memory performance and signs of reduced anxiety as compared to WT offspring. In contrast, exposure of 5-Htt +/2 mice to PS was associated with increased depressive-like behavior, an effect that tended to be more pronounced in female offspring. Further, 5-Htt genotype, PS and their interaction differentially affected the expression of numerous genes and related pathways within the female hippocampus. Specifically, MAPK and neurotrophin signaling were regulated by both the 5-Htt +/2 genotype and PS exposure, whereas cytokine and Wnt signaling were affected in a 5-Htt genotype6PS manner, indicating a gene6environment interaction at the molecular level. In conclusion, our data suggest that although the 5-Htt +/2 genotype shows clear adaptive capacity, 5-Htt +/2 mice –particularly females– at the same time appear to be more vulnerable to developmental stress exposure when compared to WT offspring. Moreover, hippocampal gene expression profiles suggest that distinct molecular mechanisms mediate the behavioral effects of the 5-Htt genotype, PS exposure, and their interaction. KW - Medizin Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-75795 ER - TY - JOUR A1 - Van den Hove, Daniel A1 - Jakob, Sissi Brigitte A1 - Schraut, Karla-Gerlinde A1 - Kenis, Gunter A1 - Schmitt, Angelika Gertrud A1 - Kneitz, Susanne A1 - Scholz, Claus-Jürgen A1 - Wiescholleck, Valentina A1 - Ortega, Gabriela A1 - Prickaerts, Jos A1 - Steinbusch, Harry A1 - Lesch, Klaus-Peter T1 - Differential Effects of Prenatal Stress in 5-Htt Deficient Mice: Towards Molecular Mechanisms of Gene x Environment Interactions JF - PLoS ONE N2 - Prenatal stress (PS) has been shown to influence the development of the fetal brain and to increase the risk for the development of psychiatric disorders in later life. Furthermore, the variation of human serotonin transporter (5-HTT, SLC6A4) gene was suggested to exert a modulating effect on the association between early life stress and the risk for depression. In the present study, we used a 5-HttxPS paradigm to investigate whether the effects of PS are dependent on the 5-Htt genotype. For this purpose, the effects of PS on cognition, anxiety-and depression-related behavior were examined using a maternal restraint stress paradigm of PS in C57BL6 wild-type (WT) and heterozygous 5-Htt deficient (5-Htt +/-) mice. Additionally, in female offspring, a genome-wide hippocampal gene expression profiling was performed using the Affymetrix GeneChip (R) Mouse Genome 430 2.0 Array. 5-Htt +/- offspring showed enhanced memory performance and signs of reduced anxiety as compared to WT offspring. In contrast, exposure of 5-Htt +/- mice to PS was associated with increased depressive-like behavior, an effect that tended to be more pronounced in female offspring. Further, 5-Htt genotype, PS and their interaction differentially affected the expression of numerous genes and related pathways within the female hippocampus. Specifically, MAPK and neurotrophin signaling were regulated by both the 5-Htt +/- genotype and PS exposure, whereas cytokine and Wnt signaling were affected in a 5-Htt genotypexPS manner, indicating a genexenvironment interaction at the molecular level. In conclusion, our data suggest that although the 5-Htt +/- genotype shows clear adaptive capacity, 5-Htt +/- mice -particularly females-at the same time appear to be more vulnerable to developmental stress exposure when compared to WT offspring. Moreover, hippocampal gene expression profiles suggest that distinct molecular mechanisms mediate the behavioral effects of the 5-Htt genotype, PS exposure, and their interaction. KW - Serotonin transporter polymorphism KW - Acute tryptophan depletion KW - Anxiety-like behavior KW - Long-term depression KW - Knock-out mice KW - Major depression KW - Interferon-alpha KW - Physiological functions KW - Restraint stress KW - Bipolar disorder Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-135111 VL - 6 IS - 8 ER - TY - THES A1 - Thoma, Eva Christina T1 - Directed differentiation of pluripotent stem cells induced by single genes T1 - Gerichtete Differenzierung pluripotenter Stammzellen induziert durch einzelne Gene N2 - Pluripotency describes the ability of stem cells to form every cell type of the body.. Pluripotent stem cells are e.g. embryonic stem cells (ESCs), but also the so called induced pluripotent stem cells (IPS cells), that are generated by reprogramming differentiated somatic cells into a pluripotent state. Furthermore, it has been shown that spermatogonia (SG) derived from adult testes of mouse or human are pluripotent. Because of their ability to differentiate into every somatic cell type, pluripotent stem cells have a unique status in research and regenerative medicine. For the latter, they offer a valuable opportunity to replace destroyed tissues or organs. For basic research, stem cells represent a useful system to study differentiation or developmental processes that are difficult to access in the physiological situation e.g. during embryogenesis. Both applications, however, require methods that allow efficient and directed differentiation of stem cells into defined specialized cell types. This study first aims to investigate the differentiation potential of SG derived from the teleost fish medaka (Oryzias latipes). My results demonstrate that medaka SG are able to form different somatic cell types, namely adipocytes, melanocytes, osteoblasts, and neurons. This indicates that medake SG have retained a broad differentiation potential suggesting that pluripotency is not restricted to mouse and human SG but might be conserved among vertebrates. Next, I wanted to establish a differentiation method that is solely based on ectopic expression of genes known to be essential for the formation of certain somatic cell types – so called master regulators (MRs). My findings show that ectopic expression of the melanocyte-specific transcription factor mitf-m that has previously been shown to induce differentiation of medaka ESCs into pigment cells resulted in the formation of the same cell type in medaka SG. This approach could be used to generate other somatic cell types. Thus, ectopic expression of the MRs cbfa1 and mash1 in MF-SG was sufficient to induce differentiation into osteoblasts and neurons, respectively. Interestingly, these differentiation processes included the activation of genes that are expressed earlier during embryogenesis than the differentiation-inducing MR. Furthermore, my findings show that the approach of MR-induced differentiation can be transferred to mammalian stem cell systems. Ectopic expression of the neural transcription factor ngn2 was sufficient to induce efficient and rapid differentiation of neurons in mouse ESCs. This differentiation process also included the induction of genes that in vivo are activated at earlier stages that ngn2. By generating a transgenic cell line allowing induction of ectopic ngn2 expression, it was possible to obtain a relatively pure culture of functional neurons. Ngn2-induced differentiation did not require any additional signals and occurred even under pluripotency promoting conditions. Moreover, ectopic expression of ngn2 did also induce the formation of cells with neuronal morphology in IPS cells indicating that MR-induced differentiation is operative in different stem cell types. Furthermore, protein transduction of Ngn2 into mouse ESCs also resulted in a neuronal differentiation process up to the appearance of neural precursor cells. Last, my results show that MR-induced differentiation can also be used to generate other cell types than neurons from mouse ESCs. Myoblasts and macrophage-like cells were generated by ectopic expression of the MRs myoD and cebpa, respectively. Using transgenic cell lines enabling induction of MR expression it was possible to obtain mixed cultures with two different differentiation processes occurring in parallel. Altogether this study shows that ectopic expression of single genes is sufficient to induce directed differentiation of stem cells into defined cell types. The feasibility of this approach was demonstrated for different MRs and consequently different somatic cell types. Furthermore, MR induced differentiation was operative in different stem cell types from fish and mouse. Thus, one can conclude that certain genes are able to define cell fates in in vitro stem cell systems and that this cell fate defining potential appears to be a conserved feature in vertebrates. These findings therefore provide new insights in the role of MRs in cell commitment and differentiation processes. Furthermore, this study presents a new method to induce directed differentiation of stem cells that offers several advantages regarding efficiency, rapidness, and reproducibility. MR-induced differentiation therefore represents a promising tool for both stem cell research and regenerative medicine. N2 - Pluripotenz bezeichnet die Fähigkeit einer Stammzelle, jede Zelle des Körpers zu bilden. Zu den pluripotenten Stammzellen gehören embryonale Stammzellen (ESZ), aber auch so genannte induzierte pluripotente Stammzellen (IPS Zellen), die durch Rückprogrammierung ausdifferenzierter Körperzellen in einen pluripotenten Status gewonnen werden. Außerdem wurde gezeigt, dass adulte Spermatogonien (SG) in Maus und Mensch pluripotent sind. Pluripotente Stammzellen sind von großer Wichtigkeit für Forschung und regenerative Medizin. Für letztere bieten diese Zellen aufgrund ihrer Fähigkeit, jede Körperzellen zu bilden, eine vielversprechende Möglichkeit, zerstörte Gewebe oder Organe zu ersetzen. In der Forschung stellen sie ein nützliches System dar, um Entwicklungs- und Differenzierungsprozesse zu untersuchen, die in der physiologischen Situation z.B. der Embryonalentwicklung – schwer zugänglich sind. Eine wichtige Grundlage für diese Anwendungen sind jedoch Methoden, die die effiziente und gerichtete Differenzierung von Stammzellen in einen bestimmten Zelltyp erlauben. In dieser Arbeit wird zunächst das Differenzierungspotential von SG der Fischspezies Medaka (Oryzias latipes) untersucht, um festzustellen, ob Pluripotenz von SG, die bisher nur in Maus und Mensch gezeigt wurde, auch in anderen Wirbeltieren außerhalb der Säuger erhalten ist. Meine Ergebnisse zeigen, dass Medaka-SG fähig sind verschiedene somatische Zelltypen zu bilden. Das zweite Ziel dieser Studie ist die Entwicklung einer Differenzierungsmethode, die nur auf der Expression einzelner so genannter Masterregulatoren (MR) beruht – Gene, die als essentiell für die Entwicklung bestimmter Zelltypen bekannt sind. Meine Ergebnisse zeigen, dass der Pigmentzell-spezifische Transkriptionsfaktor Mitf-M, von dem gezeigt wurde, dass er die Differenzierung von Medaka-ESZ in Pigmentzellen induzieren kann, die Bildung desselben Zelltyps in Medaka-SG induziert. Dieser Ansatz ermöglichte auch die Bildung anderer somatischer Zelltypen. So führte Überexpression der MR cbfa1 und mash1 in Medaka SG zur Differenzierung in Osteoblasten bzw. Neuronen. Interessanterweise wurde bei diesen Differenzierungsprozessen die Aktivierung von Genen beobachtet, die während der Embryonalentwicklung vor dem Differenzierung-auslösenden MR aktiviert werden. Weiterhin zeigen meine Ergebnisse, dass der Ansatz einer gerichteten Differenzierung, ausgelöst durch einzelne MR, auch auf Säuger-Stammzellen übertragen werden kann. So wurde durch Überexpression des neuronalen Genes ngn2 in murinen ESZ die effiziente und schnelle Bildung von Nervenzellen induziert, wobei auch hier die Aktivierung von Genen beobachtet wurde, deren Expression in der Embryogenese der von ngn2 vorangeht. Die Herstellung einer transgenen Zelllinie, in der die Überexpression von ngn2 aktiviert werden kann, erlaubte die Entstehung einer fast reinen Kultur funktionaler Neuronen. Der durch ngn2 ausgelöste Differenzierungsprozess war unabhängig von zusätzlichen Faktoren und lief sogar unter Bedingungen ab, die normalerweise den pluripotenten Zustand unterstützen. Außerdem führte Überexpression von ngn2 auch in IPS Zellen zur Bildung von Zellen mit neuronalem Phenotyp. Weiterhin konnte auch durch Transduktion des Ngn2-Proteins in murine ESZ neuronale Differenzierung ausgelöst werden, und zwar die Bildung neuronaler Vorläuferzellen. Zuletzt wird bewiesen, dass gerichtete Differenzierung von murinen ESZ durch einzelne MR Gene neben neuronalen Zelltypen auch die Bildung anderer somatischer Zellen erlaubt: Überexpression der Gene myoD oder cebpa induzierte die Differenzierung in Muskelzellen bzw. Macrophagen-ähnliche Zellen. Unter Verwendung transgener Zelllinien, die die Aktivierung jeweils eines MRs erlauben, war es möglich, gemischte Kulturen zu erhalten, in denen zwei verschiedene Differenzierungsprozesse parallel abliefen. Diese Studie zeigt, dass die Überexpression einzelner Gene ausreichend ist, um gerichtete Differenzierungsprozesse in einen bestimmten Zelltyp auszulösen. Die erfolgreiche Durchführung dieses Ansatzes wird nicht nur mit verschiedenen Genen und somit verschiedenen resultierenden Zelltypen nachgewiesen, sondern auch in verschiedenen Stammzelltypen aus Fisch und Maus. Dies erlaubt die Schlussfolgerung, dass bestimmte Gene in vitro das Schicksal von Stammzellen festlegen können und dass diese Fähigkeit eine konservierte Eigenschaft in Wirbeltieren zu sein scheint. Somit präsentiert diese Arbeit neuen Erkenntnisse über die Rolle von MR bei der Festlegung von Zellidentitäten und in Differenzierungsprozessen. Weiterhin wird eine neue Methode zur Induktion gerichteter Differenzierung in Stammzellen aufgezeigt, die mehrere Vorteile in Bezug auf Effizienz, Geschwindigkeit und Reproduzierbarkeit hat. Auslösung von Differenzierung durch MR Gene bietet somit einen neuen vielversprechenden Ansatz mit potentieller Anwendung sowohl in Stammzellforschung, als auch in regenerativer Medizin. KW - Stammzelle KW - Zelldifferenzierung KW - Transkriptionsfaktor KW - Pluripotenz KW - Pluripotent stem cells KW - differentiation KW - transcription factors Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-54706 ER - TY - JOUR A1 - Bartl, Jasmin A1 - Scholz, Claus-Jürgen A1 - Hinterberger, Margareta A1 - Jungwirth, Susanne A1 - Wichart, Ildiko A1 - Rainer, Michael K. A1 - Kneitz, Susanne A1 - Danielczyk, Walter A1 - Tragl, Karl H. A1 - Fischer, Peter A1 - Riederer, Peter A1 - Grünblatt, Edna T1 - Disorder-specific effects of polymorphisms at opposing ends of the Insulin Degrading Enzymegene JF - BMC Medical Genetics N2 - Background Insulin-degrading enzyme (IDE) is the ubiquitously expressed enzyme responsible for insulin and amyloid beta (Aβ) degradation. IDE gene is located on chromosome region 10q23-q25 and exhibits a well-replicated peak of linkage with Type 2 diabetes mellitus (T2DM). Several genetic association studies examined IDE gene as a susceptibility gene for Alzheimer's disease (AD), however with controversial results. Methods We examined associations of three IDE polymorphisms (IDE2, rs4646953; IDE7, rs2251101 and IDE9, rs1887922) with AD, Aβ42 plasma level and T2DM risk in the longitudinal Vienna Transdanube Aging (VITA) study cohort. Results The upstream polymorphism IDE2 was found to influence AD risk and to trigger the Aβ42 plasma level, whereas the downstream polymorphism IDE7 modified the T2DM risk; no associations were found for the intronic variant IDE9. Conclusions Based on our SNP and haplotype results, we delineate the model that IDE promoter and 3' untranslated region/downstream variation may have different effects on IDE expression, presumably a relevant endophenotype with disorder-specific effects on AD and T2DM susceptibility. KW - Insulin Degrading Enzyme Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-137744 VL - 12 IS - 151 ER - TY - JOUR A1 - Gowda, Madhu A1 - Godder, Kamar A1 - Kmieciak, Maciej A1 - Worschech, Andrea A1 - Ascierto, Maria-Libera A1 - Wang, Ena A1 - Francesco M., Marincola A1 - Manjili, Masoud H. T1 - Distinct signatures of the immune responses in low risk versus high risk neuroblastoma JF - Journal of Translational Medicine N2 - Background: Over 90% of low risk (LR) neuroblastoma patients survive whereas less than 30% of high risk (HR) patients are long term survivors. Age (children younger than 18 months old) is associated with LR disease. Considering that adaptive immune system is well developed in older children, and that T cells were shown to be involved in tumor escape and progression of cancers, we sought to determine whether HR patients may tend to show a signature of adaptive immune responses compared to LR patients who tend to have diminished T-cell responses but an intact innate immune response. Methods: We performed microarray analysis of RNA extracted from the tumor specimens of HR and LR patients. Flow cytometry was performed to determine the cellular constituents in the blood while multiplex cytokine array was used to detect the cytokine profile in patients' sera. A HR tumor cell line, SK-N-SH, was also used for detecting the response to IL-1 beta, a cytokines which is involved in the innate immune responses. Results: Distinct patterns of gene expression were detected in HR and LR patients indicating an active T-cell response and a diminished adaptive immune response, respectively. A diminished adaptive immune response in LR patients was evident by higher levels of IL-10 in the sera. In addition, HR patients had lower levels of circulating myeloid derived suppressor cells (MDSC) compared with a control LR patient. LR patients showed slightly higher levels of cytokines of the innate immune responses. Treatment of the HR tumor line with IL-1b induced expression of cytokines of the innate immune responses. Conclusions: This data suggests that adaptive immune responses may play an important role in the progression of HR disease whereas innate immune responses may be active in LR patients. KW - Neural precursor cells KW - Retinoic acid KW - Ifn-gamma KW - Progenitor cells KW - Breast-cancer KW - T-lymphocytes KW - IN-VIVO KW - Differentiation KW - Pathway KW - Activation KW - Neuroblastoma KW - innate immunity KW - adaptive immunity KW - prognostic biomarkers Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-135147 VL - 9 IS - 170 ER - TY - JOUR A1 - Crutzen, Rik A1 - Göritz, Anja S. T1 - Does social desirability compromise self-reports of physical activity in web-based research? JF - International Journal of Behavioral Nutrition and Physical Activity N2 - Background: This study investigated the relation between social desirability and self-reported physical activity in web-based research. Findings: A longitudinal study (N = 5,495, 54% women) was conducted on a representative sample of the Dutch population using the Marlowe-Crowne Scale as social desirability measure and the short form of the International Physical Activity Questionnaire. Social desirability was not associated with self-reported physical activity (in MET-minutes/week), nor with its sub-behaviors (i.e., walking, moderate-intensity activity, vigorous-intensity activity, and sedentary behavior). Socio-demographics (i.e., age, sex, income, and education) did not moderate the effect of social desirability on self-reported physical activity and its sub-behaviors. Conclusions: This study does not throw doubt on the usefulness of the Internet as a medium to collect self-reports on physical activity. KW - Question format KW - Internet KW - Physical Activity KW - Sedentary Behavior KW - Social Desirability KW - International Physical Activity Questionnaire KW - Total Physical Activity Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-135156 VL - 8 IS - 31 ER - TY - JOUR A1 - Herbert, Cornelia A1 - Kübler, Andrea T1 - Dogs Cannot Bark: Event-Related Brain Responses to True and False Negated Statements as Indicators of Higher-Order Conscious Processing N2 - The present study investigated event-related brain potentials elicited by true and false negated statements to evaluate if discrimination of the truth value of negated information relies on conscious processing and requires higher-order cognitive processing in healthy subjects across different levels of stimulus complexity. The stimulus material consisted of true and false negated sentences (sentence level) and prime-target expressions (word level). Stimuli were presented acoustically and no overt behavioral response of the participants was required. Event-related brain potentials to target words preceded by true and false negated expressions were analyzed both within group and at the single subject level. Across the different processing conditions (word pairs and sentences), target words elicited a frontal negativity and a late positivity in the time window from 600–1000 msec post target word onset. Amplitudes of both brain potentials varied as a function of the truth value of the negated expressions. Results were confirmed at the single-subject level. In sum, our results support recent suggestions according to which evaluation of the truth value of a negated expression is a time- and cognitively demanding process that cannot be solved automatically, and thus requires conscious processing. Our paradigm provides insight into higher-order processing related to language comprehension and reasoning in healthy subjects. Future studies are needed to evaluate if our paradigm also proves sensitive for the detection of consciousness in non-responsive patients. KW - Psychologie Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-74907 ER - TY - JOUR A1 - Herbert, Cornelia A1 - Kübler, Andrea T1 - Dogs Cannot Bark: Event-Related Brain Responses to True and False Negated Statements as Indicators of Higher-Order Conscious Processing JF - PLoS ONE N2 - The present study investigated event-related brain potentials elicited by true and false negated statements to evaluate if discrimination of the truth value of negated information relies on conscious processing and requires higher-order cognitive processing in healthy subjects across different levels of stimulus complexity. The stimulus material consisted of true and false negated sentences (sentence level) and prime-target expressions (word level). Stimuli were presented acoustically and no overt behavioral response of the participants was required. Event-related brain potentials to target words preceded by true and false negated expressions were analyzed both within group and at the single subject level. Across the different processing conditions (word pairs and sentences), target words elicited a frontal negativity and a late positivity in the time window from 600-1000 msec post target word onset. Amplitudes of both brain potentials varied as a function of the truth value of the negated expressions. Results were confirmed at the single-subject level. In sum, our results support recent suggestions according to which evaluation of the truth value of a negated expression is a time-and cognitively demanding process that cannot be solved automatically, and thus requires conscious processing. Our paradigm provides insight into higher-order processing related to language comprehension and reasoning in healthy subjects. Future studies are needed to evaluate if our paradigm also proves sensitive for the detection of consciousness in non-responsive patients. KW - Locked-in syndrome KW - Vegetative state KW - Own-name KW - Language comprehension KW - Sentence comprehension KW - Text information KW - Time-course KW - Verification KW - Potentials KW - Activation Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-135165 VL - 6 IS - 10 ER - TY - JOUR A1 - Biehl, Stefanie C. A1 - Dresler, Thomas A1 - Reif, Andreas A1 - Scheuerpflug, Peter A1 - Deckert, Jürgen A1 - Herrmann, Martin J. T1 - Dopamine Transporter (DAT1) and Dopamine Receptor D4 (DRD4) Genotypes Differentially Impact on Electrophysiological Correlates of Error Processing JF - PLoS One N2 - Recent studies as well as theoretical models of error processing assign fundamental importance to the brain's dopaminergic system. Research about how the electrophysiological correlates of error processing—the error-related negativity (ERN) and the error positivity (Pe)—are influenced by variations of common dopaminergic genes, however, is still relatively scarce. In the present study, we therefore investigated whether polymorphisms in the DAT1 gene and in the DRD4 gene, respectively, lead to interindividual differences in these error processing correlates. One hundred sixty participants completed a version of the Eriksen Flanker Task while a 26-channel EEG was recorded. The task was slightly modified in order to increase error rates. During data analysis, participants were split into two groups depending on their DAT1 and their DRD4 genotypes, respectively. ERN and Pe amplitudes after correct responses and after errors as well as difference amplitudes between errors and correct responses were analyzed. We found a differential effect of DAT1 genotype on the Pe difference amplitude but not on the ERN difference amplitude, while the reverse was true for DRD4 genotype. These findings are in line with predictions from theoretical models of dopaminergic transmission in the brain. They furthermore tie results from clinical investigations of disorders impacting on the dopamine system to genetic variations known to be at-risk genotypes. KW - haplotypes KW - electroencephalography KW - basal ganglia KW - reaction time KW - dopaminergics KW - dopamine KW - ADHD KW - research errors Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-137930 VL - 6 IS - 12 ER - TY - JOUR A1 - Bonn, Maria A1 - Schmitt, Angelika A1 - Asan, Esther T1 - Double and triple in situ hybridization for coexpression studies: combined fluorescent and chromogenic detection of neuropeptide Y (NPY) and serotonin receptor subtype mRNAs expressed at different abundance levels JF - Histochemistry and Cell Biology N2 - Multiple fluorescence in situ hybridization is the method of choice for studies aimed at determining simultaneous production of signal transduction molecules and neuromodulators in neurons. In our analyses of the monoamine receptor mRNA expression of peptidergic neurons in the rat telencephalon, double tyramide-signal-amplified fluorescence in situ hybridization delivered satisfactory results for coexpression analysis of neuropeptide Y (NPY) and serotonin receptor 2C (5-HT2C) mRNA, a receptor subtype expressed at high-to-moderate abundance in the regions analyzed. However, expression of 5-HT1A mRNA, which is expressed at comparatively low abundance in many telencephalic areas, could not be unequivocally identified in NPY mRNA-reactive neurons due to high background and poor signal-to-noise ratio in fluorescent receptor mRNA detections. Parallel chromogenic in situ hybridization provided clear labeling for 5-HT1A mRNA and additionally offered the possibility to monitor the chromogen deposition at regular time intervals to determine the optimal signal-to-noise ratio. We first developed a double labeling protocol combining fluorescence and chromogenic in situ hybridization and subsequently expanded this variation to combine double fluorescence and chromogenic in situ hybridization for triple labelings. With this method, we documented expression of 5-HT2C and/or 5-HT1A in subpopulations of telencephalic NPY-producing neurons. The method developed in the present study appears suitable for conventional light and fluorescence microscopy, combines advantages of fluorescence and chromogenic in situ hybridization protocols and thus provides a reliable non-radioactive alternative to previously published multiple labeling methods for coexpression analyses in which one mRNA species requires highly sensitive detection. KW - Triple in situ hybridization KW - Coexpression KW - NPY KW - 5-HT1A KW - 5-HT2C Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-135229 VL - 137 IS - 1 ER -