TY - JOUR A1 - Gaubatz, Stefan A1 - Esterlechner, Jasmina A1 - Reichert, Nina A1 - Iltzsche, Fabian A1 - Krause, Michael A1 - Finkernagel, Florian T1 - LIN9, a Subunit of the DREAM Complex, Regulates Mitotic Gene Expression and Proliferation of Embryonic Stem Cells JF - PLoS ONE N2 - The DREAM complex plays an important role in regulation of gene expression during the cell cycle. We have previously shown that the DREAM subunit LIN9 is required for early embryonic development and for the maintenance of the inner cell mass in vitro. In this study we examined the effect of knocking down LIN9 on ESCs. We demonstrate that depletion of LIN9 alters the cell cycle distribution of ESCs and results in an accumulation of cells in G2 and M and in an increase of polyploid cells. Genome-wide expression studies showed that the depletion of LIN9 results in downregulation of mitotic genes and in upregulation of differentiation-specific genes. ChIP-on chip experiments showed that mitotic genes are direct targets of LIN9 while lineage specific markers are regulated indirectly. Importantly, depletion of LIN9 does not alter the expression of pluripotency markers SOX2, OCT4 and Nanog and LIN9 depleted ESCs retain alkaline phosphatase activity. We conclude that LIN9 is essential for proliferation and genome stability of ESCs by activating genes with important functions in mitosis and cytokinesis. KW - cell cycle KW - cell division KW - cell differentation KW - DNA-binding proteins KW - gene expression KW - gene regulation KW - gene targeting KW - microarrays KW - pluripotency Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96922 ER - TY - JOUR A1 - Schubert, Maria A1 - Spahn, Martin A1 - Kneitz, Susanne A1 - Scholz, Claus Jürgen A1 - Joniau, Steven A1 - Stroebel, Philipp A1 - Riedmiller, Hubertus A1 - Kneitz, Burkhard T1 - Distinct microRNA Expression Profile in Prostate Cancer Patients with Early Clinical Failure and the Impact of let-7 as Prognostic Marker in High-Risk Prostate Cancer JF - PLoS ONE N2 - Background The identification of additional prognostic markers to improve risk stratification and to avoid overtreatment is one of the most urgent clinical needs in prostate cancer (PCa). MicroRNAs, being important regulators of gene expression, are promising biomarkers in various cancer entities, though the impact as prognostic predictors in PCa is poorly understood. The aim of this study was to identify specific miRNAs as potential prognostic markers in high-risk PCa and to validate their clinical impact. Methodology and Principal Findings We performed miRNA-microarray analysis in a high-risk PCa study group selected by their clinical outcome (clinical progression free survival (CPFS) vs. clinical failure (CF)). We identified seven candidate miRNAs (let-7a/b/c, miR-515-3p/5p, -181b, -146b, and -361) that showed differential expression between both groups. Further qRT-PCR analysis revealed down-regulation of members of the let-7 family in the majority of a large, well-characterized high-risk PCa cohort (n = 98). Expression of let-7a/b/and -c was correlated to clinical outcome parameters of this group. While let-7a showed no association or correlation with clinical relevant data, let-7b and let-7c were associated with CF in PCa patients and functioned partially as independent prognostic marker. Validation of the data using an independent high-risk study cohort revealed that let-7b, but not let-7c, has impact as an independent prognostic marker for BCR and CF. Furthermore, we identified HMGA1, a non-histone protein, as a new target of let-7b and found correlation of let-7b down-regulation with HMGA1 over-expression in primary PCa samples. Conclusion Our findings define a distinct miRNA expression profile in PCa cases with early CF and identified let-7b as prognostic biomarker in high-risk PCa. This study highlights the importance of let-7b as tumor suppressor miRNA in high-risk PCa and presents a basis to improve individual therapy for high-risk PCa patients. KW - biomarkers KW - gene expression KW - gene targeting KW - luciferase KW - MircoRNA KW - microarrays KW - oncogenes KW - prostate cancer Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96825 ER - TY - THES A1 - Untucht, Robert T1 - Design und Klonierung eines Targeting Vektors zur Generierung von Plasmakallikrein-defizienten Mäusen T1 - Designing and cloning of a targeting vector for generating plasma kallikrein deficient mice N2 - Gegenstand dieser Arbeit ist die Erstellung eines sogenannten "Targeting Vektors" zur gezielten Ausschaltung des Gens für Plasmakallikrein in der Maus, als Vorbereitung zur Schaffung einer Plasmakallikrein-defizienten Mauslinie. Plasmakallikrein ist eine im Blut zirkulierende Serinprotease, die Funktionen in Hämostase, Thrombusbildung und Fibrinolyse hat sowie sowohl direkt als auch indirekt mittels Bradykinin an Entzündungsvorgängen beteiligt ist. Zwei 5836 und 3834 bp lange Abschnitte aus dem murinen Plasmakallikrein-Gen wurden durch PCR isoliert und in ein Plasmid kloniert, das neben Resistenzgenen gegen Ampicillin und Neomycin auch das β-Galaktosidase-Gen zum Nachweis einer erfolgreichen Transfektion enthält. Der so entstandene "Targeting Vektor" hat eine Gesamtgröße von 18072 bp, die Basensequenz wurde durch Sequenzierung verifiziert. Der Vektor soll im Plasmakallikrein-Gen einen Teil der Exons 2 und 3 und damit einen Großteil des Signalpeptids und der ersten Proteindomäne funktionsunfähig machen. An den mit dieser Methode erstellten Knockout-Mäusen können die Funktionen von Plasmakallikrein genauer untersucht werden. N2 - This thesis describes the cloning of a targeting vector in the gene targeting strategy for a murine plasma kallikrein (PK) knock-out. PK is a serine protease found in blood which has functions in hemostasis, thrombus formation, fibrinolysis and – both directly and indirectly via bradykinin – inflammation. Two fragments of the murine PK gene with respective lengths of 5836 and 3834 bp were isolated by PCR and cloned into a plasmid containing resistance genes against both ampicillin and neomycin and the β-galactosidase gene for the detection of transfected cells. The targeting vector has a total size of 18072 bp and was verified by sequencing. The vector should destroy parts of the exons 2 and 3 in the gene for PK and thus the greater part of the signal peptide and the first protein domain. With the knock-out mice created by this means the function of PK can be investigated more thoroughly. KW - Kallikreine KW - Maus KW - Plasmakallikrein KW - knockout KW - plasma kallikrein KW - knockout KW - knock-out KW - mouse KW - gene targeting Y1 - 2012 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-78124 ER - TY - CHAP A1 - Thoenen, Hans A1 - Hughes, Richard A. A1 - Sendtner, Michael T1 - Towards a comprehensive understanding of the trophic support of motoneurons N2 - Motoneurons played an essential role in establishing the concept of target-mediated support of innervating neurons. However, it took several decades until molecules were identined which trophically support motoneurons in vitro and in vivo. The most potent molecule identined so far is ciliary neurotrophic factor (CNTF). It is expressed as a cytosolic molecule in myelinating Schwann cells rather than in skeletal muscle in the postnatal period and therefore does not qualify as a target-derived neurotrophic factor regulating motoneuron survival during embryonic development. However, the inactivation of CNTF by gene targeting experiments results in progressive atrophy and degeneration of motoneurons, demonstrating that CNTF plays an essential role as a maintenance factor for motoneurons postnatally. Secretory molecules which are expressed in skeletal muscle during embryonic development and which support motoneurons in culture and partially also in vivo include members of the NGF gene family (BDNF, NT-3, NT-4/S) , FGF-S, IGF-I, and UF. The evaluation of the physiological importance of these molecules is under investigation. KW - neurotrophic molecules KW - CNTF KW - gene targeting KW - NGF gene family KW - FGF-5 KW - lIF KW - IGF-I Y1 - 1993 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-31117 ER - TY - THES A1 - Funk, Natalja T1 - Das Sap47-Gen aus Drosophila melanogaster : Gezielte Mutagenisierung und Suche nach Interaktionspartnern T1 - The Sap47 gene of Drosophila melanogaster: mutagenesis and identification of interaction partners N2 - SAP47 ist ein Synapsenassoziiertes Protein von 47 kDa aus Drosophila melanogaster, das zu einer neuen Proteinfamilie gehört. Um eine Sap47 Mutante zu erzeugen wurden drei Methoden eingesetzt: Gezielte Mutagenese durch homologe Rekombination, RNA interference (RNAi) und Transposon Remobilisierung. Um einen Interaktionspartner für das SAP47 Protein zu identifizieren wurden ein Yeast-Two-Hybrid System und das "CytoTrap" Verfahren eingesetzt. N2 - SAP47 (synapse-associated protein of 47 kDA) of Drosophila melanogaster belongs to a novel protein family of unknown function. Three techniques were used for Sap47 mutagenesis: "gene targeting" by homologous recombination, RNA interference (RNAi) and Jump-out mutagenesis. A standard yeast-two-hybrid system and the "CytoTrap" assay were used to identify interaction partners for the SAP47 protein. KW - Taufliege KW - Molekulargenetik KW - Sap47 KW - Synapse KW - RNA interference KW - Gezeilte Mutagenese KW - Sap47 KW - synapse KW - RNA interference KW - gene targeting Y1 - 2003 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-7667 ER -