TY - JOUR A1 - Rutkowski, Andrzej J. A1 - Erhard, Florian A1 - L'Hernault, Anne A1 - Bonfert, Thomas A1 - Schilhabel, Markus A1 - Crump, Colin A1 - Rosenstiel, Philip A1 - Efstathiou, Stacey A1 - Zimmer, Ralf A1 - Friedel, Caroline C. A1 - Dölken, Lars T1 - Widespread disruption of host transcription termination in HSV-1 infection JF - Nature Communications N2 - Herpes simplex virus 1 (HSV-1) is an important human pathogen and a paradigm for virus-induced host shut-off. Here we show that global changes in transcription and RNA processing and their impact on translation can be analysed in a single experimental setting by applying 4sU-tagging of newly transcribed RNA and ribosome profiling to lytic HSV-1 infection. Unexpectedly, we find that HSV-1 triggers the disruption of transcription termination of cellular, but not viral, genes. This results in extensive transcription for tens of thousands of nucleotides beyond poly(A) sites and into downstream genes, leading to novel intergenic splicing between exons of neighbouring cellular genes. As a consequence, hundreds of cellular genes seem to be transcriptionally induced but are not translated. In contrast to previous reports, we show that HSV-1 does not inhibit co-transcriptional splicing. Our approach thus substantially advances our understanding of HSV-1 biology and establishes HSV-1 as a model system for studying transcription termination. KW - herpes simplex virus KW - RNA polymerase II KW - gene expression KW - alpha-globin KW - motif discovery KW - regulatory protein ICP27 KW - poly(A) site usage KW - pre-messenger RNA KW - splicing inhibition KW - type 1 ICP27 Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-148643 VL - 6 IS - 7126 ER - TY - JOUR A1 - Briese, Michael A1 - Saal, Lena A1 - Appenzeller, Silke A1 - Moradi, Mehri A1 - Baluapuri, Apoorva A1 - Sendtner, Michael T1 - Whole transcriptome profiling reveals the RNA content of motor axons JF - Nucleic Acids Research N2 - Most RNAs within polarized cells such as neurons are sorted subcellularly in a coordinated manner. Despite advances in the development of methods for profiling polyadenylated RNAs from small amounts of input RNA, techniques for profiling coding and non-coding RNAs simultaneously are not well established. Here, we optimized a transcriptome profiling method based on double-random priming and applied it to serially diluted total RNA down to 10 pg. Read counts of expressed genes were robustly correlated between replicates, indicating that the method is both reproducible and scalable. Our transcriptome profiling method detected both coding and long non-coding RNAs sized >300 bases. Compared to total RNAseq using a conventional approach our protocol detected 70% more genes due to reduced capture of ribosomal RNAs. We used our method to analyze the RNA composition of compartmentalized motoneurons. The somatodendritic compartment was enriched for transcripts with post-synaptic functions as well as for certain nuclear non-coding RNAs such as 7SK. In axons, transcripts related to translation were enriched including the cytoplasmic non-coding RNA 7SL. Our profiling method can be applied to a wide range of investigations including perturbations of subcellular transcriptomes in neurodegenerative diseases and investigations of microdissected tissue samples such as anatomically defined fiber tracts. KW - RNA KW - motor axons Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-126800 ER - TY - JOUR A1 - Schartl, Manfred A1 - Shen, Yingjia A1 - Maurus, Katja A1 - Walter, Ron A1 - Tomlinson, Chad A1 - Wilson, Richard K. A1 - Postlethwait, John A1 - Warren, Wesley C. T1 - Whole body melanoma transcriptome response in medaka JF - PLoS ONE N2 - The incidence of malignant melanoma continues to increase each year with poor prognosis for survival in many relapse cases. To reverse this trend, whole body response measures are needed to discover collaborative paths to primary and secondary malignancy. Several species of fish provide excellent melanoma models because fish and human melanocytes both appear in the epidermis, and fish and human pigment cell tumors share conserved gene expression signatures. For the first time, we have examined the whole body transcriptome response to invasive melanoma as a prelude to using transcriptome profiling to screen for drugs in a medaka (Oryzias latipes) model. We generated RNA-seq data from whole body RNA isolates for controls and melanoma fish. After testing for differential expression, 396 genes had significantly different expression (adjusted p-value <0.02) in the whole body transcriptome between melanoma and control fish; 379 of these genes were matched to human orthologs with 233 having annotated human gene symbols and 14 matched genes that contain putative deleterious variants in human melanoma at varying levels of recurrence. A detailed canonical pathway evaluation for significant enrichment showed the top scoring pathway to be antigen presentation but also included the expected melanocyte development and pigmentation signaling pathway. Results revealed a profound down-regulation of genes involved in the immune response, especially the innate immune system. We hypothesize that the developing melanoma actively suppresses the immune system responses of the body in reacting to the invasive malignancy, and that this mal-adaptive response contributes to disease progression, a result that suggests our whole-body transcriptomic approach merits further use. In these findings, we also observed novel genes not yet identified in human melanoma expression studies and uncovered known and new candidate drug targets for further testing in this malignant melanoma medaka model. KW - metastatic melanoma KW - expression KW - fish KW - cancer KW - stage III KW - melanogenesis KW - genome cells KW - gene KW - contributes Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-144714 VL - 10 IS - 12 ER - TY - JOUR A1 - Topolinski, Sascha A1 - Zürn, Michael A1 - Schneider, Iris K. T1 - What's in and what's out in branding? A novel articulation effect for brand names JF - Frontiers in Psychology N2 - The present approach exploits the biomechanical connection between articulation and ingestion-related mouth movements to introduce a novel psychological principle of brand name design. We constructed brand names for diverse products with consonantal stricture spots either from the front to the rear of the mouth, thus inwards (e.g., BODIKA), or from the rear to the front, thus outwards (e.g., KODIBA). These muscle dynamics resemble the oral kinematics during either ingestion (inwards), which feels positive, or expectoration (outwards), which feels negative. In 7 experiments (total N = 1261), participants liked products with inward names more than products with outward names (Experiment 1), reported higher purchase intentions (Experiment 2), and higher willingness-to-pay (Experiments 3a-3c, 4, 5), with the price gain amounting to 4-13% of the average estimated product value. These effects occurred across English and German language, under silent reading, for both edible and non-edible products, and even in the presence of a much stronger price determinant, namely fair-trade production (Experiment 5). KW - phonetic symbolism KW - moderating role KW - judgements KW - behavior KW - phonation KW - branding KW - articulation KW - sound symbolism KW - embodiment KW - phasic affective modulation KW - processing fluency KW - semantic coherence KW - affective consequences KW - consumers KW - intuition Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-143036 VL - 6 IS - 585 ER - TY - JOUR A1 - Mergl, Roland A1 - Koburger, Nicole A1 - Heinrichs, Katherina A1 - Székely, András A1 - Tóth, Mónika Ditta A1 - Coyne, James A1 - Quintão, Sónia A1 - Arensman, Ella A1 - Coffey, Claire A1 - Maxwell, Margaret A1 - Värnik, Airi A1 - van Audenhove, Chantal A1 - McDaid, David A1 - Sarchiapone, Marco A1 - Schmidtke, Armin A1 - Genz, Axel A1 - Gusmão, Ricardo A1 - Hegerl, Ulrich T1 - What Are Reasons for the Large Gender Differences in the Lethality of Suicidal Acts? An Epidemiological Analysis in Four European Countries JF - PLoS ONE N2 - Background In Europe, men have lower rates of attempted suicide compared to women and at the same time a higher rate of completed suicides, indicating major gender differences in lethality of suicidal behaviour. The aim of this study was to analyse the extent to which these gender differences in lethality can be explained by factors such as choice of more lethal methods or lethality differences within the same suicide method or age. In addition, we explored gender differences in the intentionality of suicide attempts. Methods and Findings Methods. Design: Epidemiological study using a combination of self-report and official data. Setting: Mental health care services in four European countries: Germany, Hungary, Ireland, and Portugal. Data basis: Completed suicides derived from official statistics for each country (767 acts, 74.4% male) and assessed suicide attempts excluding habitual intentional self-harm (8,175 acts, 43.2% male). Main Outcome Measures and Data Analysis. We collected data on suicidal acts in eight regions of four European countries participating in the EU-funded "OSPI-Europe"-project (www.ospi-europe.com). We calculated method-specific lethality using the number of completed suicides per method * 100 /(number of completed suicides per method + number of attempted suicides per method). We tested gender differences in the distribution of suicidal acts for significance by using the \(\chi\)\(^{2}\)-test for two-by-two tables. We assessed the effect sizes with phi coefficients (φ). We identified predictors of lethality with a binary logistic regression analysis. Poisson regression analysis examined the contribution of choice of methods and method-specific lethality to gender differences in the lethality of suicidal acts. Findings Main Results Suicidal acts (fatal and non-fatal) were 3.4 times more lethal in men than in women (lethality 13.91% (regarding 4106 suicidal acts) versus 4.05% (regarding 4836 suicidal acts)), the difference being significant for the methods hanging, jumping, moving objects, sharp objects and poisoning by substances other than drugs. Median age at time of suicidal behaviour (35-44 years) did not differ between males and females. The overall gender difference in lethality of suicidal behaviour was explained by males choosing more lethal suicide methods (odds ratio (OR) = 2.03; 95% CI = 1.65 to 2.50; p < 0.000001) and additionally, but to a lesser degree, by a higher lethality of suicidal acts for males even within the same method (OR = 1.64; 95% CI = 1.32 to 2.02; p = 0.000005). Results of a regression analysis revealed neither age nor country differences were significant predictors for gender differences in the lethality of suicidal acts. The proportion of serious suicide attempts among all non-fatal suicidal acts with known intentionality (NFSAi) was significantly higher in men (57.1%; 1,207 of 2,115 NFSAi) than in women (48.6%; 1,508 of 3,100 NFSAi) (\(\chi\)\(^{2}\) = 35.74; p < 0.000001). Main limitations of the study Due to restrictive data security regulations to ensure anonymity in Ireland, specific ages could not be provided because of the relatively low absolute numbers of suicide in the Irish intervention and control region. Therefore, analyses of the interaction between gender and age could only be conducted for three of the four countries. Attempted suicides were assessed for patients presenting to emergency departments or treated in hospitals. An unknown rate of attempted suicides remained undetected. This may have caused an overestimation of the lethality of certain methods. Moreover, the detection of attempted suicides and the registration of completed suicides might have differed across the four countries. Some suicides might be hidden and misclassified as undetermined deaths. Conclusions Men more often used highly lethal methods in suicidal behaviour, but there was also a higher method-specific lethality which together explained the large gender differences in the lethality of suicidal acts. Gender differences in the lethality of suicidal acts were fairly consistent across all four European countries examined. Males and females did not differ in age at time of suicidal behaviour. Suicide attempts by males were rated as being more serious independent of the method used, with the exceptions of attempted hanging, suggesting gender differences in intentionality associated with suicidal behaviour. These findings contribute to understanding of the spectrum of reasons for gender differences in the lethality of suicidal behaviour and should inform the development of gender specific strategies for suicide prevention. KW - case fatality rates KW - behavior KW - multicenter KW - depression KW - deaths KW - alliance KW - states Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-151547 VL - 10 IS - 7 ER - TY - JOUR A1 - Eder, Andreas B. A1 - Deutsch, Roland T1 - Watch the target! Effects in the affective misattribution procedure become weaker (but not eliminated) when participants are motivated to provide accurate responses to the target JF - Frontiers in Psychology N2 - Previous research showed that priming effects in the affective misattribution procedure (AMP) are unaffected by direct warnings to avoid an influence of the primes. The present research examined whether a priming influence is diminished by task procedures that encourage accurate judgments of the targets. Participants were motivated to categorize the affective meaning of nonsense targets accurately by being made to believe that a true word was presented in each trial and by providing feedback on (allegedly) incorrect responses. This condition produced robust priming effects. Priming was however reduced and less reliable relative to more typical AMP conditions in which participants guessed the meaning of openly presented nonsense targets. Affective judgments of nonsense targets were not affected by advance knowledge of the response mapping during the priming phase, which argues against a response-priming explanation of AMP effects. These findings show that affective primes influence evaluative judgments even in conditions in which the motivation to provide accurate responses is high and a priming of motor responses is not possible. Priming effects were however weaker with high accuracy motivation, suggesting that a focus on accurate judgments is an effective strategy to control for an unwanted priming influence in the AMP. KW - implicit attitude measurement KW - accuracy motivation KW - affect misattribution procedure KW - response priming Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-125982 VL - 6 ER - TY - JOUR A1 - Juhasz, Gabriella A1 - Gonda, Xenia A1 - Hullam, Gabor A1 - Eszlari, Nora A1 - Kovacs, David A1 - Lazary, Judit A1 - Pap, Dorottya A1 - Petschner, Peter A1 - Elliott, Rebecca A1 - Deakin, John Francis William A1 - Muir Anderson, Ian A1 - Antal, Peter A1 - Lesch, Klaus-Peter A1 - Bagdy, Gyorgy T1 - Variability in the effect of 5-HTTLPR on depression in a large European population: the role of age, symptom profile, type and intensity of life stressors JF - PLoS ONE N2 - Background Although 5-HTTLPR has been shown to influence the risk of life stress-induced depression in the majority of studies, others have produced contradictory results, possibly due to weak effects and/or sample heterogeneity. Methods In the present study we investigated how age, type and intensity of life-stressors modulate the effect of 5-HTTLPR on depression and anxiety in a European population cohort of over 2300 subjects. Recent negative life events (RLE), childhood adversity (CHA), lifetime depression, Brief Symptoms Inventory (BSI) depression and anxiety scores were determined in each subject. Besides traditional statistical analysis we calculated Bayesian effect strength and relevance of 5-HTTLPR genotypes in specified models. Results The short (s) low expressing allele showed association with increased risk of depression related phenotypes, but all nominally significant effects would turn to non-significant after correction for multiple testing in the traditional analysis. Bayesian effect strength and relevance analysis, however, confirmed the role of 5-HTTLPR. Regarding current (BSI) and lifetime depression 5-HTTLPR-by-RLE interactions were confirmed. Main effect, with other words direct association, was supported with BSI anxiety. With more frequent RLE the prevalence or symptoms of depression increased in ss carriers. Although CHA failed to show an interaction with 5-HTTLPR, in young subjects CHA sensitized towards the depression promoting effect of even mild RLE. Furthermore, the direct association of anxiety with the s allele was driven by young (\(\leq\)30) individuals. Limitations Our study is cross-sectional and applies self-report questionnaires. Conclusions Albeit 5-HTTLPR has only weak/moderate effects, the s allele is directly associated with anxiety and modulates development of depression in homogeneous subgroups. KW - serotonin transporter gene KW - environment interaction KW - polymorphism KW - events KW - moderation KW - CB1 receptor antagonists KW - s allele KW - association KW - anxiety KW - metaanalysis Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-143703 VL - 10 IS - 3 ER - TY - THES A1 - Hain, Johannes T1 - Valuation Algorithms for Structural Models of Financial Networks T1 - Algorithmen zur Bestimmung von Gleichgewichtslösungen in Finanzsystemen mit Kapitalverflechtung N2 - The thesis focuses on the valuation of firms in a system context where cross-holdings of the firms in liabilities and equities are allowed and, therefore, systemic risk can be modeled on a structural level. A main property of such models is that for the determination of the firm values a pricing equilibrium has to be found. While there exists a small but growing amount of research on the existence and the uniqueness of such price equilibria, the literature is still somewhat inconsistent. An example for this fact is that different authors define the underlying financial system on differing ways. Moreover, only few articles pay intense attention on procedures to find the pricing equilibria. In the existing publications, the provided algorithms mainly reflect the individual authors' particular approach to the problem. Additionally, all existing methods do have the drawback of potentially infinite runtime. For these reasons, the objects of this thesis are as follows. First, a definition of a financial system is introduced in its most general form in Chapter 2. It is shown that under a fairly mild regularity condition the financial system has a unique existing payment equilibrium. In Chapter 3, some extensions and differing definitions of financial systems that exist in literature are presented and it is shown how these models can be embedded into the general model from the proceeding chapter. Second, an overview of existing valuation algorithms to find the equilibrium is given in Chapter 4, where the existing methods are generalized and their corresponding mathematical properties are highlighted. Third, a complete new class of valuation algorithms is developed in Chapter 4 that includes the additional information whether a firm is in default or solvent under a current payment vector. This results in procedures that are able find the solution of the system in a finite number of iteration steps. In Chapter 5, the developed concepts of Chapter 4 are applied to more general financial systems where more than one seniority level of debt is present. Chapter 6 develops optimal starting vectors for non-finite algorithms and Chapter 7 compares the existing and the new developed algorithms concerning their efficiency in an extensive simulation study covering a wide range of possible settings for financial systems. N2 - Die vorliegende Dissertation hat die Unternehmensbewertung in Finanzsystemen mit Fremd- und Eigenkapitalverflechtung zum Thema. Die zentrale Eigenschaft dieser Modelle ist, dass zur Bestimmung der Firmenwerte eine Gleichgewichtslösung ermittelt werden muss. Die Zahl der Veröffentlichungen mit dem Schwerpunkt des Nachweises von Existenz- und Eindeutigkeitsaussagen der Gleichgewichte steigt zwar stetig an, allerdings ist die Fachliteratur in diesem Bereich teilweise noch sehr inkonsistent. Beispielsweise existieren je nach Autor unterschiedliche Vorgehensweisen, das zugrunde liegende Finanzsystem zu definieren. Darüber hinaus schenken nur wenige Fachartikel der Frage Beachtung, wie die Lösungsgleichgewichte genau bestimmt werden können. Zuletzt weisen die bereits entwickelten Verfahren den Nachteil auf, dass Sie womöglich unendlich viele Iterationsschritte benötigen bis die gesuchte Lösung exakt erreicht wird. Aus diesen Gründen beinhaltet die vorliegende Dissertation folgende Themen. Im ersten Schritt wird in Kapitel 2 eine möglichst allgemeine Definition eines Finanzsystems eingeführt. Es wird gezeigt dass unter nicht allzu strengen Voraussetzungen die Gleichgewichtslösung dieses Systems eindeutig bestimmt ist. In Kapitel 3 werden in der Fachliteratur zu diesem Thema zu findende Erweiterungen und abweichende Definitionen des Systems vorgestellt und wie diese in das allgemeine Modell aus dem vorherigen Kapitel eingebettet werden können. Danach wird in Kapitel 4 ein Überblick über bereits entwickelte Lösungsverfahren gegeben, wobei die existierenden Prozeduren in ihrem Vorgehen verallgemeinert und deren zugehörige mathematische Eigenschaften aufgezeigt werden. Des weiteren wird im gleichen Kapitel eine komplett neue Klasse von Lösungsverfahren entwickelt, die noch die zusätzliche Information verarbeiten, ob eine Firma für einen gegebenen Zahlungsvektor solvent oder insolvent ist. Als Folge dieses Ansatzes sind diese Algorithmen in der Lage, die exakte Gleichgewichtslösung des Systems in endlich vielen Schritten zu finden. In Kapitel 5 werden die entworfenen Konzepte dann für Finanzsysteme angewendet, in denen mehr als nur eine Schulden-Seniorität berücksichtigt wird. Kapitel 6 leitet optimale Startvektoren der nicht-endlichen Verfahren her und Kapitel 7 vergleicht die bereits existierenden und alle neu entwickelten Lösungsverfahren bezüglich ihrer Laufzeiteffizienz im Rahmen einer ausführlichen Simulationsstudie. KW - Risikomanagement KW - Finanzmathematik KW - Financial Networks KW - Counterparty Risk KW - Numerical Asset Valuation KW - Systemic Risk KW - Structrual Model KW - Unternehmensbewertung KW - Kapitalverflechtung KW - Finanzielle Netzwerke KW - Systemisches Risiko Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-128108 ER - TY - THES A1 - Lang, Melanie T1 - Valence Shell Photoionization of Soot Precursors with Synchrotron Radiation T1 - Valenzschalen-Photoionisation von Rußvorläufern mit Synchrotron-Strahlung N2 - A series of combustion relevant species like radicals, carbenes and polycyclic aromatic hydrocarbons were characterized in the gas phase by vacuum UV synchrotron radiation and their ionization energies (IE) and further spectroscopic details of the respective cations were retrieved from threshold photoelectron spectra. The reactive intermediates were generated by flash vacuum pyrolysis from stable precursor molecules. Furthermore three polycyclic aromatic hydrocarbons were investigated by threshold photoelectron spectroscopy, too. The experiment was performed at the VUV beamline of the Swiss Light Source in Villigen/Switzerland and the iPEPICO (imaging photoelectron photoion coincidence) setup was applied to correlate ions and electrons from the same ionization event. From the threshold photoelectron spectra and from quantum chemical computations the vibrational structure of the molecule cations and the geometry changes upon ionization were assigned. The ionization energies of the two C4H5 isomers 2-butyn-1-yl and 1-butyn-3-yl were assigned to 7.94±0.02 eV and 7.97±0.02 eV, respectively. The isomerization between the two isomers was computed to have a barrier of 2.20 eV, so a rearrangement between the two radicals cannot be excluded. From the threshold photoelectron spectra of the two constitutional C4H7 isomers 1-methylallyl and 2-methylallyl the ionization energies were assigned to 7.48±0.02 eV and to 7.59±0.02 eV for 1-E-methylallyl and 1-Z-methylallyl, as well as to 7.88±0.01 eV for 2-methylallyl. The two radicals 9-fluorenyl, C13H9, and benzhydryl, C13H11, were observed to ionize at 7.01±0.02 eV and 6.7 eV. The threshold photoelectron spectrum of benzhydryl also incorporated the signal of the diphenylmethyl carbene, C13H10, which has an IE at 6.8 eV. In addition, the head-to-head dimers of 9-fluorenyl and benzhydryl were observed as products in the pyrolysis. C26H18 has an IE at 7.69±0.04 eV and C26H22 has an IE at 8.13±0.04 eV. The three polycyclic aromatic hydrocarbon DHP (C14H16) 1-PEN (C18H22) and THCT (C22H16) were investigated in an effusive beam. The ionization energies were determined to IE(DHP)= 7.38±0.02 eV, IE(1-PEN)=7.58±0.05 eV and IE(THCT)=6.40±0.02 eV. Furthermore the thermal decomposition and the dissociative photoionization of diazomeldrum’s acid was investigated. The pyrolysis products yielded beside several other products the two not yet (by photoelectron spectroscopy) characterized molecules E-formylketene, C3O2H2 and 2-diazoethenone, N2C2O. The dissociative photoionization showed the Wolff rearrangement to occur at higher internal energies. N2 - Die vorliegende Arbeit befasst sich mit VUV Valenz-Photoionisations-Experimenten, welche in der Gasphase an verschiedenen Kohlenwasserstoffradikalen und drei polyzyklischen aromatischen Kohlen- wasserstoffen (PAH) durchgeführt wurde. Des Weiteren wurden die Pyrolyseprodukte der Dia- zomeldrumsäure mit dem genannten Experiment untersucht. Die reaktiven Intermediate wurden im Vakuum mittels Flash-Pyrolyse aus stabilen Vorläufermolekülen erzeugt. Die meisten dieser waren kommerziell erhältlich, wobei auch einige Moleküle selbst im Würzburger Chemielabor synthetisiert wurden. Die erzeugten Radikale und Carbene wurden in einem kontinuierlichen Molekularstrahl ex- pandiert. Um den Vorläufer in die Gasphase zu überführen, wurden verschiedene Molekular-Quellen eingesetzt. Die Auswahl erfolgte dabei in Abhängigkeit des Dampfdrucks des Vorläufermoleküls. Die Polyzyklischen Aromaten (PAH) wurden in der Arbeitsgruppe von Prof. Dr. Anke Krüger im Insti- tut für Organische Chemie der Universität Würzburg synthetisiert. Die PAH wurden in einer Fest- stoffmolekularquelle geheizt und in einem effusiven Molekularstrahl expandiert. Die Ionisation aller Spezies erfolgte mit monochromatischem VUV-Synchrotronlicht, das an der Bending-Magnet Beam- line an der Swiss Light Source in Villigen/Schweiz erzeugt wird. Das Schwellenphotoelektronen- Photoionen-Koinzidenz (TPEPICO) Experiment wurde zur Detektion und Analyse der Ionisation- sprozesse angewendet. Dieses Experiment ermöglicht es massenselektierte Ionen und Schwellen- photoelektronen des selben Ionisationsereignisses zu korrelieren. Die Ionen wurden in einem Time- of-Flight Massenspektrometer detektiert. Durch Integration des Massensignals und anschließende Auswertung des zugeordneten Schwellenphotoelektronen-Signals erhält man das Schwellenphotoelek- tronen-Spektrum (TPES) des Moleküls bzw. Fragments. Aus den TPE-Spektren konnten Ion- isierungsenergien bestimmt werden und mit Hilfe von Franck-Condon-Simulationen sowohl die Schwin- gungsstruktur im Kation, als auch die Geometrieänderung, hervorgerufen durch die Ionisation, analysiert werden. Berechnete Ionisierungsenergien wurden zusätzlich mit den experimentellen Daten verglichen. Im Folgenden werden die einzelnen Ergebnisse aufgelistet. ... KW - Ultraviolett-Photoelektronenspektroskopie KW - photoelectron-photoion coincidence KW - Photoelektronen-Photoionen-Koinzidenz KW - reactive intermediates KW - pyrolysis KW - reaktive Intermediate KW - Pyrolyse KW - Fotoionisation Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-117038 ER - TY - THES A1 - Camargo Molina, José Eliel T1 - Vacuum stability of models with many scalars T1 - Vakuumstabilität von Modellen mit vielen Skalaren N2 - One of the most popular extensions of the SM is Supersymmetry (SUSY). It is a symmetry relating fermions and bosons and also the only feasible extension to the symmetries of spacetime. With SUSY it is then possible to explain some of the open questions left by the SM while at the same time opening the possibility of gauge unification at a high scale. SUSY theories require the addition of new particles, in particular an extra Higgs doublet and at least as many new scalars as fermions in the SM. Much in the same way that the Higgs boson breaks SU (2)L symmetry, these new scalars can break any symmetry for which they carry a charge through spontaneous symmetry breaking. Let us assume there is a local minimum of the potential that reproduces the correct phenomenol- ogy for a parameter point of a given model. By exploring whether there are other deeper minima with VEVs that break symmetries we want to conserve, like SU (3)C or U (1)EM , it is possible to exclude regions of parameter space where that happens. The local minimum with the correct phenomenology might still be metastable, so it is also necessary to calculate the probability of tunneling between minima. In this work we propose and apply a framework to constrain the parameter space of models with many scalars through the minimization of the one-loop eff e potential and the calculation of tunneling times at zero and non zero temperature.After a brief discussion about the shortcomings of the SM and an introduction of the basics of SUSY, we introduce the theory and numerical methods needed for a successful vacuum stability analysis. We then present Vevacious, a public code where we have implemented our proposed framework. Afterwards we go on to analyze three interesting examples. For the constrained MSSM (CMSSM) we explore the existence of charge- and color- breaking (CCB) minima and see how it constraints the phenomenological relevant region of its parameter space at T = 0. We show that the regions reproducing the correct Higgs mass and the correct relic density for dark matter all overlap with regions suffering from deeper CCB minima. Inspired by the results for the CMSSM, we then consider the natural MSSM and check the region of parameter space consistent with the correct Higgs mass against CCB minima at T /= 0. We find that regions of parameter space with CCB minima overlap significantly with that reproducing the correct Higgs mass. When thermal eff are considered the majority of such points are then found to have a desired symmetry breaking minimum with very low survival probability. In both these studies we find that analytical conditions presented in the literature fail in dis- criminating regions of parameter space with CCB minima. We also present a way of adapting our framework so that it runs quickly enough for use with parameter fit studies. Lastly we show a different example of using vacuum stability in a phenomenological study. For the BLSSM we investigate the violation of R-parity through sneutrino VEVs and where in parameter space does this happen. We find that previous analyses in literature fail to identify regions with R-parity conservation by comparing their results to our full numerical analysis. N2 - Eine der populärsten Erweiterungen des SM ist die Supersymmetrie (SUSY). Dies ist eine Symmetrie, die Bosonen und Fermionen in Beziehung setzt und auch die einzige machbare Erweiterung der Raumzeitsymmetrien. SUSY kann einige offene Fragen des SM erklären und eröffnet die Möglichkeit einer Vereinheitlichung der Eichwechselwirkungen bei einer hohen Skala. Supersymmetrische Theorien erfordern das Hinzufügen neuer Teilchen, insbesondere eines zusätzlichen Higgs-Dubletts und zumindest eines Skalars für jedes Fermion im SM. So wie im SM das Higgs-Boson die SU (2)L-Symmetrie bricht, können diese neuen Skalare jede Symmetrie, deren Ladung sie tragen, spontan brechen. Angenommen, es gibt ein lokales Minimum des Potentials, das die korrekte Phänomenologie für einen Parameterraumpunkt eines Modells erzeugt: Durch die Suche nach anderen tieferen Minima mit Vakuumerwartungswerten, die gewünschte Symmetrien wie SU (3) oder U (1)EM brechen, ist es möglich Parameterraumpunkte, in denen dies passiert, auszuschliessen. Das lokale Minimum mit der korrekten Phänomenologie kann immernoch metastabil sein, weshalb es auch notwendig ist, die Tunnelwahrscheinlichkeit zwischen zwei Minima zu berechnen. In dieser Arbeit legen wir eine Prozedur vor und wenden sie an, um den Parameterraum von Modellen mit vielen Skalaren durch die Minimierung des effektiven Ein-Schleifen-Potentials und durch die Berechnung seiner Lebensdauer sowohl bei T = 0 und bei T /= 0 einzuschränken. Nach einer kurzen Diskussion der Unzulänglichkeiten des SM und Einführung der Grundlagen von SUSY erläutern wir die Theorie und die die nötigen numerischen Methoden für eine erfolgreiche Analyse der Vakuumstabilitaet. Danach präsentieren wir Vevacious, ein öffentliches Programmpaket, in das wir unsere Prozedur implementiert haben. Daraufhin analysieren wir drei interessante Beispiele. Für das Constrained MSSM (CMSSM) untersuchen wir die die Existenz von Minima, in denen die Farb- oder elektrische Ladung nicht erhalten ist (CCB-Minima), und wie dessen phänomenologisch relevante Region des Parameter- raums dadurch bei T = 0 eingeschränkt wird. Wir zeigen, dass die Regionen, die die korrekte Higgsmasse und die richtige Relikt-Dichte für die Dunkle Materie reproduzieren, mit Regionen, die tiefere CCB-Minima aufweisen, überlappen. Inspiriert durch die Ergebnisse für das CMSSM betrachten wir dann das Natural MSSM und prüfen die Parameterraumregion mit der korrekten Higgsmasse auf CCB-Minima bei T /= 0.Wir finden, dass die Region des Parameterraums mit CCB-Minima deutlich mit denen mit einer korrekten Higgsmasse überlappt. Bei Berücksichtigung von thermalen Effekten hat ein Großteil der bei T = 0 langlebigen Punkte ein gewünschtes symmetriebrechendes Minimum mit einer sehr geringen Überlebenswahrscheinlichkeit bei T /= 0. In beiden Studien finden wir, dass die analytischen Bedingungen, die bisher in der Literatur präsentiert wurden, nicht ausreichen, um Bereiche des Parameterraums mit CCB-Minima auszuweisen. Wir präsentieren einen Weg, unsere Prozedur für die Nutzung in Parameterraum-Fit-Studien zu beschleunigen. Zuletzt zeigen wir ein weiteres Beispiel. Für das BLSSM untersuchen wir die Verletzung der R-Parität durch Sneutrino- VEVs und in welchen Parameterraumbereichen dies geschieht. Wir stellen durch Vergleich mit unserer kompletten numerischen Analyse heraus, dass frühere Analysen in der Literatur darin fehlschlagen, diese Bereiche mit Erhaltung der R-Parität zu identifizieren. KW - Supersymmetry KW - Vacuum stability KW - Supersymmetry KW - Beyond Standard Model Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-112755 ER - TY - THES A1 - Gnamlin, Prisca T1 - Use of Tumor Vasculature for Successful Treatment of Carcinomas by Oncolytic Vaccinia Virus T1 - Die Tumorvasulatur in der erfolgreichen Therapie von Carcinomen durch onkolytische Vaccinia Viren N2 - Tumor-induced angiogenesis is of major interest for oncology research. Vascular endothelial growth factor (VEGF) is the most potent angiogenic factor characterized so far. VEGF blockade was shown to be sufficient for angiogenesis inhibition and subsequent tumor regression in several preclinical tumor models. Bevacizumab was the first treatment targeting specifically tumor-induced angiogenesis through VEGF blockade to be approved by the Food and Drugs Administration (FDA) for cancer treatment. However, after very promising results in preclinical evaluations, VEGF blockade did not show the expected success in patients. Some tumors became resistant to VEGF blockade. Several factors have been accounted responsible, the over-expression of other angiogenic factors, the noxious influence of VEFG blockade on normal tissues, the selection of hypoxia resistant neoplastic cells, the recruitment of hematopoietic progenitor cells and finally the transient nature of angiogenesis inhibition by VEGF blockade. The development of blocking agents against other angiogenic factors like placental growth factor (PlGF) and Angiopoietin-2 (Ang-2) allows the development of an anti-angiogenesis strategy adapted to the profile of the tumor. Oncolytic virotherapy uses the natural propensity of viruses to colonize tumors to treat cancer. The recombinant vaccinia virus GLV-1h68 was shown to infect, colonize and lyse several tumor types. Its descendant GLV-1h108, expressing an anti-VEGF antibody, was proved in previous studies to inhibit efficiently tumor induced angiogenesis. Additional VACVs expressing single chain antibodies (scAb) antibodies against PlGF and Ang-2 alone or in combination with anti VEGF scAb were designed. In this study, VACV-mediated anti-angiogenesis treatments have been evaluated in several preclinical tumor models. The efficiency of PlGF blockade, alone or in combination with VEGF, mediated by VACV has been established and confirmed. PlGF inhibition alone or with VEGF reduced tumor burden 5- and 2-folds more efficiently than the control virus, respectively. Ang-2 blockade efficiency for cancer treatment gave controversial results when tested in different laboratories. Here we demonstrated that unlike VEGF, the success of Ang-2 blockade is not only correlated to the strength of the blockade. A particular balance between Ang-2, VEGF and Ang-1 needs to be induced by the treatment to see a regression of the tumor and an improved survival. We saw that Ang-2 inhibition delayed tumor growth up to 3-folds compared to the control virus. These same viruses induced statistically significant tumor growth delays. This study unveiled the need to establish an angiogenic profile of the tumor to be treated as well as the necessity to better understand the synergic effects of VEGF and Ang-2. In addition angiogenesis inhibition by VACV-mediated PlGF and Ang-2 blockade was able to reduce the number of metastases and migrating tumor cells (even more efficiently than VEGF blockade). VACV colonization of tumor cells, in vitro, was limited by VEGF, when the use of the anti-VEGF VACV GLV-1h108 drastically improved the colonization efficiency up to 2-fold, 72 hours post-infection. These in vitro data were confirmed by in vivo analysis of tumors. Fourteen days post-treatment, the anti-VEGF virus GLV-1h108 was colonizing 78.8% of the tumors when GLV-1h68 colonization rate was 49.6%. These data confirmed the synergistic effect of VEGF blockade and VACV replication for tumor regression. Three of the tumor cell lines used to assess VACV-mediated angiogenesis inhibition were found, in certain conditions, to mimic either endothelial cell or pericyte functions, and participate directly to the vascular structure. The expression by these tumor cells of e-selectin, p-selectin, ICAM-1 and VCAM-1, normally expressed on activated endothelial cells, corroborates our findings. These proteins play an important role in immune cell recruitment, and there amount vary in presence of VEGF, PlGF and Ang-2, confirming the involvement of angiogenic factors in the immuno-modulatory abilities of tumors. In this study VACV-mediated angiogenesis blockade proved its potential as a therapeutic agent able to treat different tumor types and prevent resistance observed during bevacizumab treatment by acting on different factors. First, the expression of several antibodies by VACV would prevent another angiogenic factor to take over VEGF and stimulate angiogenesis. Then, the ability of VACV to infect tumor cells would prevent them to form blood vessel-like structures to sustain tumor growth, and the localized delivery of the antibody would decrease the risk of adverse effects. Next, the blockade of angiogenic factors would improve VACV replication and decrease the immune-modulatory effect of tumors. Finally the fact that angiogenesis blockade lasts until total regression of the tumor would prevent the recovery of the tumor-associated vasculature and the relapse of patients. N2 - Ein Hauptinteresse der onkologischen Forschung liegt auf dem Verständnis der Tumor-induzierten Angiogenese. Es wurde bereits festgestellt, dass die meisten Tumortypen eine abnorme Expression angiogener Faktoren zeigen. Der vascular endothelial growth factor (VEGF) wurde als der effektivste angiogene Faktor beschrieben. Es wurde gezeigt, dass die Hemmung des VEGF zur Inhibition der Angiogenese führt, das wiederum zu Tumorregression in vorklinischen Tumormodellen führte. Bevacizumab ist das erste FDA zugelassene Krebs-Therapeutikum, welches spezifisch auf die Tumor-induzierte Angiogenese durch VEGF-Inhibition abzielt. Der erwartete Erfolg durch VEGF-Hemmung konnte im Patienten allerdings nicht erzielt werden. Die Entwicklung von neuen Angiogenese hemmenden Stoffen wie gegen den placental growth factor (PIGF) oder Angiopoietin-2 (Ang-2), ermöglichen eine an das Tumor-Profil angepasste anti-angiogene Strategie. Die onkolytische Virustherapie die natürliche Eigenschaft der Viren Tumore zu kolonisieren. Das Vaccinia-Virus (VACV) gehört zur Familie der Poxviridae und wurde bereits lange Zeit als Vakzin zur Immunisierung gegen Pocken eingesetzt. Es konnte gezeigt werden, dass das rekombinante VACV GLV-1h68 effizient verschiedene Tumortypen infiziert, kolonisiert und lysiert. Das VACV GLV-1h108, welches auf der Basis des GLV-1h68 generiert wurde, kodiert einen anti-VEGF Antikörper. Dieses Virus ist in der Lage ist die Tumor-induzierte Angiogenese effizient zu inhibieren. Zusätzlich zu diesem VACV wurden weitere Konstrukte kloniert, welche für Antikörper gegen PIGF und Ang-2 kodieren. Zusätzlich wurden Virusstämme konstruiert, die gleichzeitig zwei Angiogenesefaktoren anzielen. Es wurde verschiedene VACV-vermittelte anti-Angiogenese Therapien in vorklinischen Tumormodellen wie Lungenadenokarzinome, KolonKarzinom, Melanom und Lungenadenokarzinome evaluiert. Die Effizienz der VACV-vermittelten Hemmung von PIGF und Ang-2, singulär oder in Kombination mit VEGF, wurde mit Tumor-Xenotransplantaten ermittelt. Die Inhibition von PlGF alleine oder in Kombination mit VEGF reduzierten die Tumorbelastung bis zu fünf, beziehungsweise zwei mal effizienter als GLV-1h68. Weiterhin wurde gezeigt, dass anders als VEGF, der Erfolg der Ang-2 Hemmung nicht nur mit der Stärke der Hemmung korreliert. Um Tumorregression sowie eine verbesserte Überlebensrate zu verursachen muss eine Balance zwischen Ang-2, VEGF und Ang-1 induziert werden. GLV-1h68 behandelte Tumore waren drei mal gröβer als Tumore, die mit den anti-Ang2 exprimierenden Viren behandelt wurden. Dieselben Virusstämme verursachten eine erhebliche Verspätung des Wachstums der Tumoren. Ausserdem hat diese Arbeit die Notwendigkeit enthüllt, ein angiogenes Profil des zu behandelnden Tumors zu etablieren sowie den Bedarf die synergistischen Effekte von VEGF und Ang-2 besser zu verstehen. Durch die Inhibition der Angiogenese durch VACV-verursachte PIGF und Ang-2 Hemmung wurde die Anzahl der Metastasen und der migrierenden Tumorzellen reduziert. Es wurde gezeigt, dass VEGF die VACV-Kolonisierung von Tumorzellen limitiert, da der Einsatz eines anti-VEGF VACV zu einer Verbesserung der Kolonisierung führt. In vivo Analysen bestätigten diese in vitro Daten. Nach vierzehn Tagen kolonisierte das anti-VEGF Virus 78,85% der Tumoren während die Kolonizationsquote des Kontrollviruses 49,64 % war. Dies resultierte in Tumorregression. Drei der getesteten Tumorzelllinien, in welchen die VACV-vermittelte Angiogenese-Inhibition untersucht wurde, waren in der Lage als Teil der Vaskulatur zu fungieren. Die Expression von Adhäsionsproteinen in diesen Tumorzellen untermauert die Ergebnisse. Weiterhin konnte ein unterschiedliches Expressionsmuster in Anwesenheit von VEGF, PIGF und Ang-2 festgestellt werden, wodurch die Beteiligung angiogener Faktoren bei den immunmodulatorischen Eigenschaften von Tumoren gezeigt werden konnte. In dieser Arbeit konnte gezeigt werden, dass eine VACV-vermittelte anti-angiogene Behandlung für verschiedene Tumorvarianten erfolgsversprechend ist. Die Möglichkeit verschiedene Antikörper gegen unterschiedliche angiogene Faktoren zu exprimieren würde verhindern, dass diese die Angiogenese stimulierende Wirkung des VEGF übernehmen. Die Eigenschaft von VACV Tumorzellen zu infizieren verhindert, dass diese Blutgefäß-ähnliche Strukturen bilden, welche das Tumorwachstum gewährleisten würde. Weiterhin würde die lokal begrenzte Antikörper-Freisetzung das Risiko von Nebenwirkungen senken. Die Inhibition angiogener Faktoren würde die VACV Replikationsrate steigern und den immunmodulatorischen Effekt der Tumore abschwächen. Letztlich würde die Hemmung der Angiogenese bis zur völligen Regression des Tumors aufrechterhalten, die Neubildung Tumor-assoziierter Vaskulatur verhindern und somit den Rückfall des Patienten. KW - Vaccinia-Virus KW - cancer KW - vaccinia virus KW - virotherapy KW - tumor vascularization KW - oncolytic virotherapy KW - Onkolyse KW - Angiogenese Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-119019 ER - TY - THES A1 - Firdessa Fite, Rebuma T1 - Use of polyhexanide and nanomedicine approach for effective treatments of cutaneous leishmaniasis T1 - Die Verwendung von Polyhexaniden und Konzepten der Nanomedizin zur effektiven Behandlung kutaner Leishmaniose N2 - Despite huge suffering caused by cutaneous leishmaniasis (CL), there is no effective and affordable treatment strategy against CL and no licensed vaccines. The current treatments show limited efficacy and high toxicity. Improved therapies through discovery of novel drugs and/or an alternative treatment approaches are/is urgently needed. We aimed at identifying a novel antileishmanial agent and developing an innovative nanoparticle (NP) based platform for safe and effective treatments against CL. We discovered that polyhexanide (PHMB), a widely used antimicrobial polymer and wound antisepsis, shows an inherent antileishmanial activity at submicromolar concentrations. PHMB appears to kill L. major parasites via a dual mechanism involving disruption of membrane integrity and selective chromosome condensation. However, host chromosomes binding appear to be limited by exclusion from mammalian cell nuclei. Moreover, we attempted to establish effective drug delivery systems that overcome the various shortcomings in the present treatment of CL. In this scenario, we initially studied the cellular interactions of NPs and their uptake mechanisms into mammalian cells before applying them in drug delivery system. We obtained clear evidence for the involvement of multiple endocytic routes to internalize NPs. Physicochemical properties of NPs, cell type, temperature and pathogenesis of the target diseases were shown to be determinant factors. Thereafter, a mechanism based host- and pathogen-directed combination therapy comprising PHMB and CpG ODN immunomodulator was established for overall synergistic effect against CL. It simultaneously targets the pathogen and the host immunity with effective delivery system. The results show that PHMB binds to CpG ODN and form stable nanopolyplexes for efficient cell entry and therapy. The nanopolyplexes displayed enhanced cellular uptake and antileishmanial potency while drastically reducing the toxicity against mammalian cells. In conclusion, our findings clearly indicate that PHMB can be used as effective candidate drug against CL and as non-viral delivery of immunomodulatorynucleic acids. Moreover, our proof-of concept study showed nanomedicine approaches are effective strategy to challenge CL and other human diseases. N2 - Obgleich enorme Leiden mit der kutanen Leishmaniose einhergehen stehen bis dato keine wirkungsvollen und erschwinglichen Therapien oder zugelassene Impfstoffe zur Verfügung. Die derzeitigen Behandlungsmethoden sind kaum effektiv und zeichnen sich vor allem durch ihre enormen Nebenwirkungen aus. Aus diesem Grund ist die Erforschung neuartiger Wirkstoffe und Therapieansätze gegen kutane Leishmaniose zwingend notwendig. Die vorliegende Arbeit beschreibt die Entdeckung eines neuen antileishmanialen Wirkstoffes und die Etablierung eines innovativen und auf Nanopartikeln basierenden Verfahrens zur sicheren und effizienten Behandlung der kutanen Leishmaniose. Das Polyhexanid, welches bereits Verwendung als antimikrobielles Polymer und als Wundantiseptikum findet, weist bereits in submikromolaren Konzentrationen eine immanente antileishmaniale Wirkung auf. Den Beobachtungen zu Folge beeinflusst das Polyhexanid die Integrität der parasitären Zellmembran und führt zur selektiven Chromosomenkondensation des Parasiten Leishmania major. Eine potentielle Chromosomenmodifikation in der Säugetierzelle wird durch den Ausschluss des Polyhexanides aus dem Zellkern verhindert. Um die zahlreichen Mängel der aktuellen Behandlungsmethoden gegen kutane Leishmaniose zu überwinden, wurde zudem ein effizientes System der Wirkstoffabgabe etabliert. Diesbezüglich wurden zunächst die zellulären Wechselwirkungen der Nanopartikel und deren Aufnahme in die Säugtierzelle untersucht ehe diese als Vehikel für den Wirkstoff verwendet wurden. Es konnte gezeigt werden, dass die Nanopartikel über mehrere endozytische Wege internalisiert werden. Physikochemische Eigenschaften der Nanopartikel, der Zelltyp, die Temperatur und erregerspezifische Pathogenese gehören zu den beeinflussenden Faktoren. Daraufhin wurde eine Kombinationstherapie bestehend aus Polyhexaniden und dem unmethylierten Immunmodulator Zystein-Phosphat-Guanin Oligodeoxynukleotid mit synergistischen antileishmanialen Auswirkungen, etabliert. Dies gestattet eine gegen den Erreger zielgerichtete Behandlung und die zeitgleiche Stimulierung der Wirtsimmunität. Die Bildung eines stabilen Nanopolyplexes bestehend aus dem Polyhexanid und dem oben genannten Immunmodulator befähigen die effiziente Aufnahme in die Zelle und somit die Behandlung. Der Nanopolyplex ermöglicht eine verbesserte Aufnahme in die Zelle und antileishmaniale Wirksamkeit wohingegen die Toxizität gegenüber Säugetierzellen drastisch reduziert ist. Zusammenfassend lässt sich feststellen, dass Polyhexanide als effizienter Wirkstoffkandidat gegen kutane Leishmaniose und als nicht-viraler Träger von immunmodulatorischen Nukleinsäuren zu betrachten sind. Zugleich wurde gezeigt, dass die Nanomedizin einen wertvollen Beitrag zur Bekämpfung der kutanen Leishmaniose und sicherlich auch anderer Krankheitserregern leisten kann. KW - Leishmaniose KW - Nanoparticles KW - Therapie KW - polymer KW - Nanomedizin KW - Nanomedicine KW - PHMB Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-115072 ER - TY - JOUR A1 - Walz, Yvonne A1 - Wegmann, Martin A1 - Leutner, Benjamin A1 - Dech, Stefan A1 - Vounatsou, Penelope A1 - N'Goran, Eliézer K. A1 - Raso, Giovanna A1 - Utzinger, Jürg T1 - Use of an ecologically relevant modelling approach to improve remote sensing-based schistosomiasis risk profiling JF - Geospatial Health N2 - Schistosomiasis is a widespread water-based disease that puts close to 800 million people at risk of infection with more than 250 million infected, mainly in sub-Saharan Africa. Transmission is governed by the spatial distribution of specific freshwater snails that act as intermediate hosts and the frequency, duration and extent of human bodies exposed to infested water sources during human water contact. Remote sensing data have been utilized for spatially explicit risk profiling of schistosomiasis. Since schistosomiasis risk profiling based on remote sensing data inherits a conceptual drawback if school-based disease prevalence data are directly related to the remote sensing measurements extracted at the location of the school, because the disease transmission usually does not exactly occur at the school, we took the local environment around the schools into account by explicitly linking ecologically relevant environmental information of potential disease transmission sites to survey measurements of disease prevalence. Our models were validated at two sites with different landscapes in Côte d’Ivoire using high- and moderateresolution remote sensing data based on random forest and partial least squares regression. We found that the ecologically relevant modelling approach explained up to 70% of the variation in Schistosoma infection prevalence and performed better compared to a purely pixelbased modelling approach. Furthermore, our study showed that model performance increased as a function of enlarging the school catchment area, confirming the hypothesis that suitable environments for schistosomiasis transmission rarely occur at the location of survey measurements. KW - Côte d’Ivoire KW - schistosomiasis KW - spatial risk profiling KW - remote sensing KW - ecological relevant model Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-126148 VL - 10 IS - 2 ER - TY - JOUR A1 - Kuhn, Joachim A1 - Gripp, Tatjana A1 - Flieder, Tobias A1 - Dittrich, Marcus A1 - Hendig, Doris A1 - Busse, Jessica A1 - Knabbe, Cornelius A1 - Birschmann, Ingvild T1 - UPLC-MRM Mass Spectrometry Method for Measurement of the Coagulation Inhibitors Dabigatran and Rivaroxaban in Human Plasma and Its Comparison with Functional Assays JF - PLOS ONE N2 - Introduction The fast, precise, and accurate measurement of the new generation of oral anticoagulants such as dabigatran and rivaroxaban in patients' plasma my provide important information in different clinical circumstances such as in the case of suspicion of overdose, when patients switch from existing oral anticoagulant, in patients with hepatic or renal impairment, by concomitant use of interaction drugs, or to assess anticoagulant concentration in patients' blood before major surgery. Methods Here, we describe a quick and precise method to measure the coagulation inhibitors dabigatran and rivaroxaban using ultra-performance liquid chromatography electrospray ionization-tandem mass spectrometry in multiple reactions monitoring (MRM) mode (UPLC-MRM MS). Internal standards (ISs) were added to the sample and after protein precipitation; the sample was separated on a reverse phase column. After ionization of the analytes the ions were detected using electrospray ionization-tandem mass spectrometry. Run time was 2.5 minutes per injection. Ion suppression was characterized by means of post-column infusion. Results The calibration curves of dabigatran and rivaroxaban were linear over the working range between 0.8 and 800 mu g/L (r > 0.99). Limits of detection (LOD) in the plasma matrix were 0.21 mu g/L for dabigatran and 0.34 mu g/L for rivaroxaban, and lower limits of quantification (LLOQ) in the plasma matrix were 0.46 mu g/L for dabigatran and 0.54 mu g/L for rivaroxaban. The intraassay coefficients of variation (CVs) for dabigatran and rivaroxaban were < 4% and 6%; respectively, the interassay CVs were < 6% for dabigatran and < 9% for rivaroxaban. Inaccuracy was < 5% for both substances. The mean recovery was 104.5% (range 83.8-113.0%) for dabigatran and 87.0%(range 73.6-105.4%) for rivaroxaban. No significant ion suppressions were detected at the elution times of dabigatran or rivaroxaban. Both coagulation inhibitors were stable in citrate plasma at -20 degrees C, 4 degrees C and even at RT for at least one week. A method comparison between our UPLC-MRM MS method, the commercially available automated Direct Thrombin Inhibitor assay (DTI assay) for dabigatran measurement from CoaChrom Diagnostica, as well as the automated anti-Xa assay for rivaroxaban measurement from Chromogenix both performed by ACL-TOP showed a high degree of correlation. However, UPLC-MRM MS measurement of dabigatran and rivaroxaban has a much better selectivity than classical functional assays measuring activities of various coagulation factors which are susceptible to interference by other coagulant drugs. Conclusions Overall, we developed and validated a sensitive and specific UPLC-MRM MS assay for the quick and specific measurement of dabigatran and rivaroxaban in human plasma. KW - LC-MS/MS KW - validation KW - serum KW - quantification KW - apixaban KW - diagnostic accuracy KW - performance liquid chromatography KW - factor XA inhibitor KW - direct oral anticoagulants KW - direct thrombin inhibitor Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-136023 VL - 10 IS - 12 ER - TY - JOUR A1 - Ayanu, Yohannes A1 - Conrad, Christopher A1 - Jentsch, Anke A1 - Koellner, Thomas T1 - Unveiling undercover cropland inside forests using landscape variables: a supplement to remote sensing image classification JF - PLoS ONE N2 - The worldwide demand for food has been increasing due to the rapidly growing global population, and agricultural lands have increased in extent to produce more food crops. The pattern of cropland varies among different regions depending on the traditional knowledge of farmers and availability of uncultivated land. Satellite images can be used to map cropland in open areas but have limitations for detecting undergrowth inside forests. Classification results are often biased and need to be supplemented with field observations. Undercover cropland inside forests in the Bale Mountains of Ethiopia was assessed using field observed percentage cover of land use/land cover classes, and topographic and location parameters. The most influential factors were identified using Boosted Regression Trees and used to map undercover cropland area. Elevation, slope, easterly aspect, distance to settlements, and distance to national park were found to be the most influential factors determining undercover cropland area. When there is very high demand for growing food crops, constrained under restricted rights for clearing forest, cultivation could take place within forests as an undercover. Further research on the impact of undercover cropland on ecosystem services and challenges in sustainable management is thus essential. KW - climate change KW - land-cover classification KW - bale mountains national park KW - sub-saharan africa KW - agroforestry systems KW - biodiversity conservation KW - ecosystem services KW - topographic aspect KW - wheat-varieties Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-151686 VL - 10 IS - 6 ER - TY - THES A1 - Dannemann, Frank T1 - Unified Monitoring of Spacecrafts T1 - Vereinheitlichte Überwachung von Raumfahrzeugen N2 - Within this thesis a new philosophy in monitoring spacecrafts is presented: the unification of the various kinds of monitoring techniques used during the different lifecylce phases of a spacecraft. The challenging requirements being set for this monitoring framework are: - "separation of concerns" as a design principle (dividing the steps of logging from registered sources, sending to connected sinks and displaying of information), - usage during all mission phases, - usage by all actors (EGSE engineers, groundstation operators, etc.), - configurable at runtime, especially regarding the level of detail of logging information, and - very low resource consumption. First a prototype of the monitoring framework was developed as a support library for the real-time operating system RODOS. This prototype was tested on dedicated hardware platforms relevant for space, and also on a satellite demonstrator used for educational purposes. As a second step, the results and lessons learned from the development and usage of this prototype were transfered to a real space mission: the first satellite of the DLR compact satellite series - a space based platform for DLR's own research activities. Within this project, the software of the avionic subsystem was supplemented by a powerful logging component, which enhances the traditional housekeeping capabilities and offers extensive filtering and debugging techniques for monitoring and FDIR needs. This logging component is the major part of the flight version of the monitoring framework. It is completed by counterparts running on the development computers and as well as the EGSE hardware in the integration room, making it most valuable already in the earliest stages of traditional spacecraft development. Future plans in terms of adding support from the groundstation as well will lead to a seamless integration of the monitoring framework not only into to the spacecraft itself, but into the whole space system. N2 - Im Rahmen dieser Arbeit wird eine neue Philosophie der Überwachung von Raumfahrzeugen vorgestellt: die Vereinigung der verschiedenen Arten von Überwachungstechniken, die während der verschiedenen Entwicklungsphasen eines Raumfahrzeuges verwendet werden. Die Anforderungen an dieses Monitoring Framework sind: - "Separation of Concerns" als Designprinzip, - Nutzung während aller Missionsphasen, - Nutzung durch alle beteiligten Akteure, - Konfigurierbarkeit zur Laufzeit, insbesondere in Bezug auf die Detailebene der Protokollierung, und - sehr niedriger Ressourcenverbrauch. Zunächst wird ein Prototyp des Frameworks als Support-Bibliothek für das Echtzeit-Betriebssystem RODOS entwickelt. Dieser Prototyp wurde auf dedizierten Raumfahrt-relevanten Hardware-Plattformen und auf einem Satelliten-Demonstrator getestet. In einem zweiten Schritt werden die Ergebnisse und Erfahrungen aus der Entwicklung und Nutzung dieses Prototypen auf eine echte Weltraummission übertragen: den ersten Satelliten der DLR Kompakt-Satelliten-Serie. Im Rahmen dieses Projektes wird die Software des Avionik-Subsystems durch eine leistungsstarke Logging-Komponente ergänzt, die das traditionelle Housekeeping erweitert und umfangreiche Filter- und Debugging-Techniken für die Überwachung und Analyse bereitstellt. Diese Logging-Komponente bildet den Hauptteil der Flug-Version des Frameworks. Sie wird ergänzt durch entsprechende Auswerte- und Konfigurations-Software, die auf den jeweiligen Entwicklungscomputern bzw. dem EGSE-Equipment im Integrationsraum ausgeführt wird. Hierdurch kommt das Unified Monitoring Framework bereits in sehr frühen Phasen der Entwicklung eines Raumfahrzeuges zum Einsatz. Zukünftige Pläne in Bezug auf die Einbettung der bodengebundenen Bestandteile des Frameworks in die Infrastruktur der Bodenstation führen letztlich zu einer nahtlosen Integration in das operationelle Szenario. KW - Raumfahrzeug KW - Überwachungstechnik KW - Monitoring KW - Software KW - Unified Monitoring KW - Spacecrafts KW - Logging KW - Onboard Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-115934 ER - TY - JOUR A1 - Ma, Eric Yue A1 - Calvo, M. Reyes A1 - Wang, Jing A1 - Lian, Biao A1 - Mühlbauer, Mathias A1 - Brüne, Christoph A1 - Cui, Yong-Tao A1 - Lai, Keji A1 - Kundhikanjana, Worasom A1 - Yang, Yongliang A1 - Baenninger, Matthias A1 - König, Markus A1 - Ames, Christopher A1 - Buhmann, Hartmut A1 - Leubner, Philipp A1 - Molenkamp, Laurens W. A1 - Zhang, Shou-Cheng A1 - Goldhaber-Gordon, David A1 - Kelly, Michael A. A1 - Shen, Zhi-Xun T1 - Unexpected edge conduction in mercury telluride quantum wells under broken time-reversal symmetry JF - Nature Communications N2 - The realization of quantum spin Hall effect in HgTe quantum wells is considered a milestone in the discovery of topological insulators. Quantum spin Hall states are predicted to allow current flow at the edges of an insulating bulk, as demonstrated in various experiments. A key prediction yet to be experimentally verified is the breakdown of the edge conduction under broken time-reversal symmetry. Here we first establish a systematic framework for the magnetic field dependence of electrostatically gated quantum spin Hall devices. We then study edge conduction of an inverted quantum well device under broken time-reversal symmetry using microwave impedance microscopy, and compare our findings to a noninverted device. At zero magnetic field, only the inverted device shows clear edge conduction in its local conductivity profile, consistent with theory. Surprisingly, the edge conduction persists up to 9 T with little change. This indicates physics beyond simple quantum spin Hall model, including material-specific properties and possibly many-body effects. KW - topological insulators KW - surface states KW - HgTe KW - Hg1-xCdxTe KW - vacancies Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-143185 VL - 6 IS - 7252 ER - TY - THES A1 - Freiberg, Martina T1 - UI-, User-, & Usability-Oriented Engineering of Participative Knowledge-Based Systems T1 - UI-, Benutzer-, & Usability-orientierte Entwicklung partizipativer Wissensbasierter Systeme N2 - Knowledge-based systems (KBS) face an ever-increasing interest in various disciplines and contexts. Yet, the former aim to construct the ’perfect intelligent software’ continuously shifts to user-centered, participative solutions. Such systems enable users to contribute their personal knowledge to the problem solving process for increased efficiency and an ameliorated user experience. More precisely, we define non-functional key requirements of participative KBS as: Transparency (encompassing KBS status mediation), configurability (user adaptability, degree of user control/exploration), quality of the KB and UI, and evolvability (enabling the KBS to grow mature with their users). Many of those requirements depend on the respective target users, thus calling for a more user-centered development. Often, also highly expertise domains are targeted — inducing highly complex KBs — which requires a more careful and considerate UI/interaction design. Still, current KBS engineering (KBSE) approaches mostly focus on knowledge acquisition (KA) This often leads to non-optimal, little reusable, and non/little evaluated KBS front-end solutions. In this thesis we propose a more encompassing KBSE approach. Due to the strong mutual influences between KB and UI, we suggest a novel form of intertwined UI and KB development. We base the approach on three core components for encompassing KBSE: (1) Extensible prototyping, a tailored form of evolutionary prototyping; this builds on mature UI prototypes and offers two extension steps for the anytime creation of core KBS prototypes (KB + core UI) and fully productive KBS (core KBS prototype + common framing functionality). (2) KBS UI patterns, that define reusable solutions for the core KBS UI/interaction; we provide a basic collection of such patterns in this work. (3) Suitable usability instruments for the assessment of the KBS artifacts. Therewith, we do not strive for ’yet another’ self-contained KBS engineering methodology. Rather, we motivate to extend existing approaches by the proposed key components. We demonstrate this based on an agile KBSE model. For practical support, we introduce the tailored KBSE tool ProKEt. ProKEt offers a basic selection of KBS core UI patterns and corresponding configuration options out of the box; their further adaption/extension is possible on various levels of expertise. For practical usability support, ProKEt offers facilities for quantitative and qualitative data collection. ProKEt explicitly fosters the suggested, intertwined development of UI and KB. For seamlessly integrating KA activities, it provides extension points for two selected external KA tools: For KnowOF, a standard office based KA environment. And for KnowWE, a semantic wiki for collaborative KA. Therewith, ProKEt offers powerful support for encompassing, user-centered KBSE. Finally, based on the approach and the tool, we also developed a novel KBS type: Clarification KBS as a mashup of consultation and justification KBS modules. Those denote a specifically suitable realization for participative KBS in highly expertise contexts and consequently require a specific design. In this thesis, apart from more common UI solutions, we particularly also introduce KBS UI patterns especially tailored towards Clarification KBS. N2 - Das Interesse an wissensbasierten Systemen (WBS) in verschiedensten Fachdisziplinen und Anwendungskontexten wächst nach wie vor stetig. Das frühere Ziel — intelligente Software als Expertenersatz — verschiebt sich dabei allerdings kontinuierlich in Richtung partizipativer, nutzerzentrierter Anwendungen. Solche Systeme erlauben dem Benutzer, das vorhandene persönliche Hintergrundwissen in den Problemlösungsprozess mit einzubringen um die Effizienz des Systems zu steigern und die User Experience zu verbessern. Konkret definieren wir für partizipative WBS die folgenden, nichtfunktionalen Anforderungen: Transparenz (umfassende Vermittlung des Systemstatus), Konfigurierbarkeit (Anpassbarkeit an verschiedene Benutzer und Grad der Benutzerkontrolle und Explorationsmöglichkeit), Qualität sowohl der Wissensbasis als auch der Benutzeroberfläche und Fortentwickelbarkeit (Fähigkeit des WBS analog zu den Kenntnissen seiner Nutzer zu reifen). Viele dieser Anforderungen hängen stark von den jeweiligen Nutzern ab. Im Umkehrschluss erfordert dies eine nutzerzentriertere Entwicklung solcher Systeme. Die häufig sehr fachspezifischen Zieldomänen haben meist entsprechend komplexe Wissensbasen zur Folge. Dies verlangt erst Recht nach einem wohlüberlegten, durchdachten UI- und Inkteraktionsdesign. Dem zum Trotz fokussieren aktuelle WBS Entwicklungsansätze jedoch nach wie vor auf der Wissensformalisierung. Mit der Folge, dass oft keine optimalen, schlecht wiederverwendbare und nur teilweise (oder gar nicht) evaluierte WBS UI/Interaktionslösungen entstehen. Die vorliegende Dissertation schlägt einen allumfassenderen WBS Entwicklungsansatz vor. Unter Berücksichtigung der starken, wechselseitigen Beeinflussung von Wissensbasis und UI ist dieser geprägt durch eine starke Verzahnung von Wissensbasis- und UI-Entwicklung. Der Ansatz stützt sich auf drei Kernkomponenten für allumfassende Entwicklung wissensbasierter Systeme: (1) Extensible Prototyping, eine adaptierte Form des evolutionären Prototyping. Extensible Prototyping basiert auf hochentwickelten UI Prototypen und definiert zwei Erweiterungsschritte um jederzeit WBS-Kernprototypen (Wissensbasis und Kern-UI) beziehungsweise voll funktionale wissensbasierte Anwendungen (WBS Kernprototyp und Rahmenfunktionalität) zu erstellen. (2) WBS UI Patterns. Diese Patterns, oder Muster, definieren wiederverwendbare Lösungen für die Kern-UI und -Inkteraktion. In dieser Arbeit stellen wir eine Sammlung grundlegender WBS UI Patterns vor. (3) Passende Usability Techniken die sich speziell für die Evaluation von WBS Software eignen. Insgesamt streben wir keine weitere, in sich geschlossene WBS Entwicklungsmethodologie an. Vielmehr motivieren wir, existierende, Wissensformalisierungs-lastige Ansätze um die vorgeschlagenen Kernkomponenten zu erweitern. Wir demonstrieren das am agilen Prozessmodell für wissensbasierte Systeme. Für die praktische Umsetzung des vorgestellten Ansatzes stellen wir außerdem das spezialisierte WBS Prototyping- und Softwareentwicklungswerkzeug ProKEt vor. ProKEt unterstützt eine Auswahl der interessantesten WBS UI Patterns sowie zugehöriger Konfigurationsoptionen. Deren weitere Anpassung beziehungsweise Erweiterung ist auf verschiedenen Expertise-Leveln möglich. Um ebenso die Anwendung von Usability Techniken zu unterstützen, bietet ProKEt weiterhin Funktionalität für die quantitative und qualitative Datensammlung. Auch baut ProKEt bewusst auf die strikt verzahnte Entwicklung von UI- und Wissensbasis. Für die einfache und nahtlose Integration von Wissensformalisierung in den Gesamtprozess unterstützt ProKEt zwei externe Wissensformalisierungs-Werkzeuge: KnowOF, eine Wissensformalisierungsumgebung welche standartisierte Office Dokumente nutzt. Und KnowWE, ein semantisches Wiki für die kollaborative Wissensformalisierung im Web. Damit ist ProKEt ein mächtiges Werkzeug für umfassende, nutzerzentrierte WBS Entwicklung. Mithilfe des Entwicklungsansatzes und des Werkzeugs ProKEt haben wir weiterhin einen neuartigen WBS Typ entwickelt: Wissensbasierte Klärungssysteme, im Wesentlichen ein Mashup aus Beratungs-, Erklärungs- und Rechtfertigungskomponente. Diese Systeme stellen eine angepasste Realisierung von partizipativen WBS für höchst fachliche Kontexte dar und verlangten entsprechend nach einem sehr speziellen Design. In der vorliegenden Arbeit stellen wir daher neben allgemeinen WBS UI Patterns auch einige spezialisierte Varianten für wissensbasierte Klärungssysteme vor. KW - Wissensbasiertes System KW - Knowledge-based Systems Engineering KW - Expert System KW - Usability KW - UI and Interaction Design KW - User Participation KW - Expertensystem Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-106072 SN - 978-3-95826-012-2 (print) SN - 978-3-95826-013-9 (online) PB - Würzburg University Press ER - TY - JOUR A1 - Yu, Leo A1 - Natarajan, Chandra M. A1 - Horikiri, Tomoyuki A1 - Langrock, Carsten A1 - Pelc, Jason S. A1 - Tanner, Michael G. A1 - Abe, Eisuke A1 - Maier, Sebastian A1 - Schneider, Christian A1 - Höfling, Sven A1 - Kamp, Martin A1 - Hadfield, Robert H. A1 - Fejer, Martin M. A1 - Yamamoto, Yoshihisa T1 - Two-photon interference at telecom wavelengths for time-bin-encoded single photons from quantum-dot spin qubits JF - Nature Communications N2 - Practical quantum communication between remote quantum memories rely on single photons at telecom wavelengths. Although spin-photon entanglement has been demonstrated in atomic and solid-state qubit systems, the produced single photons at short wavelengths and with polarization encoding are not suitable for long-distance communication, because they suffer from high propagation loss and depolarization in optical fibres. Establishing entanglement between remote quantum nodes would further require the photons generated from separate nodes to be indistinguishable. Here, we report the observation of correlations between a quantum-dot spin and a telecom single photon across a 2-km fibre channel based on time-bin encoding and background-free frequency downconversion. The downconverted photon at telecom wavelengths exhibits two-photon interference with another photon from an independent source, achieving a mean wavepacket overlap of greater than 0.89 despite their original wavelength mismatch (900 and 911 nm). The quantum-networking operations that we demonstrate will enable practical communication between solid-state spin qubits across long distances. KW - atom KW - 1550 nm KW - up-conversion KW - heralded entanglement KW - emission KW - interface KW - generation KW - communication KW - downconversion Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-138677 VL - 6 ER - TY - JOUR T1 - Two-particle Bose-Einstein correlations in pp collisions at \(\sqrt {s}\) = 0.9 and 7 TeV measured with the ATLAS detector JF - European Physical Journal C: Particles and Fields N2 - The paper presents studies of Bose–Einstein Correlations (BEC) for pairs of like-sign charged particles measured in the kinematic range p\(_{T}\) > 100 MeV and |η| <  2.5 in proton collisions at centre-of-mass energies of 0.9 and 7 TeV with the ATLAS detector at the CERN Large Hadron Collider. The integrated luminosities are approximately 7 μb\(^{−1}\), 190 μb\(^{−1}\) and 12.4 nb\(^{−1}\) for 0.9 TeV, 7 TeV minimum-bias and 7 TeV high-multiplicity data samples, respectively. The multiplicity dependence of the BEC parameters characterizing the correlation strength and the correlation source size are investigated for charged-particle multiplicities of up to 240. A saturation effect in the multiplicity dependence of the correlation source size parameter is observed using the high-multiplicity 7 TeV data sample. The dependence of the BEC parameters on the average transverse momentum of the particle pair is also investigated. KW - ATLAS detector KW - proton-proton collision KW - Bose-Einstein Correlations Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-150222 VL - 75 IS - 10 ER -