TY - THES A1 - Selig, Christian T1 - The ITS2 Database - Application and Extension N2 - Der internal transcribed spacer 2 (ITS2) des ribosomalen Genrepeats ist ein zunehmend wichtiger phylogenetischer Marker, dessen RNA-Sekundärstruktur innerhalb vieler eukaryontischer Organismen konserviert ist. Die ITS2-Datenbank hat zum Ziel, eine umfangreiche Ressource für ITS2-Sequenzen und -Sekundärstrukturen auf Basis direkter thermodynamischer als auch homologiemodellierter RNA-Faltung zu sein. Ergebnisse: (a) Eine komplette Neufassung der ursprünglichen die ITS2-Datenbank generierenden Skripte, angewandt auf einen aktuellen NCBI-Datensatz, deckte mehr als 65.000 ITS2-Strukturen auf. Dies verdoppelt den Inhalt der ursprünglichen Datenbank und verdreifacht ihn, wenn partielle Strukturen mit einbezogen werden. (b) Die Endbenutzer-Schnittstelle wurde neu geschrieben, erweitert und ist jetzt in der Lage, benutzerdefinierte Homologiemodellierungen durchzuführen. (c) Andere möglichen RNA-Strukturaufklärungsmethoden (suboptimales und formenbasiertes Falten) sind hilfreich, können aber Homologiemodellierung nicht ersetzen. (d) Ein Anwendungsfall der ITS2-Datenbank in Zusammenhang mit anderen am Lehrstuhl entwickelten Werkzeugen gab Einblick in die Verwendung von ITS2 für molekulare Phylogenie. N2 - The internal transcribed spacer 2 (ITS2) of the ribosomal gene repeat is an increasingly important phylogenetic marker whose RNA secondary structure is widely conserved across eukaryotic organisms. The ITS2 database aims to be a comprehensive resource on ITS2 sequence and secondary structure, based on direct thermodynamic as well as homology modelled RNA folds. Results: (a) A rebuild of the original ITS2 database generation scripts applied to a current NCBI dataset reveal more than 60,000 ITS2 structures. This more than doubles the contents of the original database and triples it when including partial structures. (b) The end-user interface was rewritten, extended and now features user-defined homology modelling. (c) Other possible RNA structure discovery methods (namely suboptimal and shape folding) prove helpful but are not able to replace homology modelling. (d) A use case of the ITS2 database in conjunction with other tools developed at the department gave insight into molecular phylogenetic analysis with ITS2. KW - Phylogenie KW - Bioinformatik KW - Würzburg / Universität / Lehrstuhl für Bioinformatik KW - Datenbank KW - Perl KW - SQL KW - Trichoplax adhaerens KW - Placozoa KW - RNS KW - S KW - internal transcribed spacer 2 KW - ITS-2 KW - ITS2 KW - Phylogeny KW - Database KW - Perl KW - SQL KW - Placozoa Y1 - 2007 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-23895 ER - TY - THES A1 - Walz, Yvonne T1 - Measuring burn severity in forests of South-West Western Australia using MODIS N2 - Burn severity was measured within the Mediterranean sclerophyll forests of south-west Western Australia (WA) using remote sensing data from the Moderate Resolution Imaging Spectroradiometer (MODIS). The region of south-west WA is considered as a high fire prone landscape and is managed by the state government’s Department of Conservation and Land Management (CALM). Prescribed fuel reduction burning is used as a management tool in this region. The measurement of burn severity with remote sensing data focused on monitoring the success and impact of prescribed burning and wildfire in this environment. The high temporal resolution of MODIS with twice daily overpasses in this area was considered highly favourable, as opportunities for prescribed burning are temporally limited by climatic conditions. The Normalised Burn Ratio (NBR) was investigated to measure burn severity in the forested area of south-west WA. This index has its heritage based on data from the Landsat TM/ETM+ sensors (Key and Benson, 1999 [1],[2]) and was transferred from Landsat to MODIS data. The measurement principally addresses the biomass consumption due to fire, whereas the change detected between the pre-fire image and the post-fire image is quantified by the ÄNBR. The NBR and the Normalised Difference Vegetation Index (NDVI) have been applied to MODIS and Landsat TM/ETM+ data. The spectral properties and the index values of the remote sensing data have been analysed within different burnt areas. The influence of atmospheric and BRDF effects on MODIS data has been investigated by comparing uncorrected top of atmosphere reflectance and atmospheric and BRDF corrected reflectance. The definition of burn severity classes has been established in a field trip to the study area. However, heterogeneous fire behaviour and patchy distribution of different vegetation structure made field classification difficult. Ground truth data has been collected in two different types of vegetation structure present in the burnt area. The burn severity measurement of high resolution Landsat data was assessed based on ground truth data. However, field data was not sufficient for rigorous validation of remote sensing data. The NBR index images of both sensors have been calibrated based on training areas in the high resolution Landsat image. The burn severity classifications of both sensors are comparable, which demonstrates the feasibility of a burn severity measurement using moderate spatial resolution 250m MODIS data. The normalisation through index calculation reduced atmospheric and BRDF effects, and thus MODIS top of at-mosphere data has been considered suitable for the burn severity measurement. The NBR could not be uniformly applied, as different structures of vegetation influenced the range of index values. Furthermore, the index was sensitive to variability in moisture content. However, the study concluded that the NBR on MODIS data is a useful measure of burn severity in the forested area of south-west WA. KW - Westaustralien KW - Waldbrand KW - Fernerkundung KW - MODIS KW - Waldbraende KW - Fernerkundung KW - Australien KW - MODIS KW - mediterranes Oekosystem KW - burn severity KW - MODIS KW - Normalised Burn Ratio (NBR) KW - Mediterranean sclerophyll forest KW - prescribed burning Y1 - 2004 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-14745 ER - TY - THES A1 - May, Jan-Hendrik T1 - The Quebrada de Purmamarca, Juyuj, NW-Argentina : Landscape Evolution and Morphodynamics in the Semi-Arid Andes N2 - This study aims at reconstructing landscape evolution in the Quebrada de Purmamarca, NW-Argentina. Thorough mapping of the existing landforms and present morphodynamic situation was conducted on the base of intensive field work and the interpretation of remote sensing imagery. Aside from geomorphological mapping, field work focused on the description of numerous sedimentological and pedological profiles. The analysis of these profiles was supported by laboratory data from field samples (granulometry, CaCO3 content) but also by a 14C age date. With particular regard to pedological questions, several samples from soil crust were micromorphologically analysed and interpreted. The resulting data allowed the reconstruction of several phases of landscape evolution in the Quebrada de Purmamarca back to the Miocene. During this phase, the Andes were still a landscape of relatively low relief being subject to processes of planation under conditions markedly more humid than today. Highly faulted and deformed fanglomerates are the first evidence of a progressing uplift coupled under an increasingly arid climate. As a consequence of continued uplift and alternating phases of erosion and aggradation, large terrace systems have formed. Particularly the youngest terrace level shows good preservation. Against the background of the intense climatic changes characteristic for the Pleistocene, these terraces have been the major focus of this study. They are built up almost entirely from coarse debris-flow sediments which are thought to be the result of a significant drop of the periglacial belt of more than 1,000 meters. This interpretation is confirmed by a variety of relict periglacial landforms like “glatthang” morphology (smooth topography), sheets of frost debris and asymmetric valleys. As sediment supply from periglacial debris production exceeded the transport capacity of the drainage system leading to the dominance of depositional processes. Aggradation has been interrupted or at least weakened several times as reflected by two lacustrine to fluvial intervals within the terrace deposits. In this context, particularly the younger interval might announce a shift in morphodynamics around 49 ka BP (14C age), when the phase of terrace aggradation grades into a phase of dominant alluvial fan activity. On the terrace surfaces a well-developed reddish soil has developed. It is interpreted to indicate a phase of increased humidity possibly in relation with the “Minchin” wet phase between 40 ka BP and 25 ka BP. At many places, this reddish soil is overlain by a markedly cemented sand crust. Based on the good sorting of medium and fine sand, this sand crust could be interpreted as fluvio-eolian sediment. Its deposition under very arid and cold climatic conditions may be attributed to the Late Glacial Maximum (LGM). However, the sand crust shows signs of erosion at many places and has not been observed anywhere below the level of the terrace surface. Therefore the onset of severe erosion and incision resulting in the evacuation of enormous quantities of sediment from the study area is assumed to postdate the LGM, possibly due to increased discharge rates during a wetter Lateglacial. Regardless of its timing, the intense incision is likely to have cut down to below the present floodplain evidently causing several mass wasting events in the study area. Since the early Holocene a number of short-term changes seem to have been responsible for the landscape evolution of the Quebrada de Purmamarca. More humid phases of pronounced slope smoothing have alternated with semi-arid phases of longer duration. The well-developed, polycyclic calcretes on top of the inactive terraces and alluvial fans give evidence for these changes. At present, the marked desert pavement on top of most terraces and alluvial fan surfaces prevent soil. The concentration of runoff on these pavements amplifies badland formation and alluvial fan activity along the terrace slopes. The presently observed floodplain aggradation may be attributed to these processes but considering the severe gullying reaching far into the upper study area, the aggradation may as well reflect a more general and regional trend. KW - Quartär KW - Anden KW - Geomorphologie KW - Geomorphologische Kartierung KW - Paläoklima KW - Südamerika Y1 - 2002 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-34416 ER - TY - THES A1 - Lenhard, Alexandra T1 - Intra- and intermanual transfer of adaptation to unnoticed virtual displacement under terminal and continuous visual feedback N2 - Versuchspersonen trainierten mit der rechten Hand Zielbewegungen zu verschiedenen Zielen unter terminalem oder kontinuierlichem visuellem Feedback. Für eines der Ziele wurde die visuelle Rückmeldung so manipuliert, dass Bewegungen zu diesem Ziel kürzer wirkten, als sie tatsächlich waren. Nach dem Training sollten die gleichen Ziele sowohl mit der trainierten rechten als auch mit der untrainierten linken Hand erreicht werden. Bewegungen der rechten Hand passten sich an die unbemerkte visuelle Transformation an. Die Adaptation war unter kontinuierlichem Feedback schwächer als unter terminalem. Außerdem generalisierte die Adapation nur unter terminalem, aber nicht unter kontinuierlichem Feedback, auf andere Zielbewegungen in die gleiche Richtung, aber nicht auf Zielbewegungen in die entgegengesetzte Richtung. Bewegungen der untrainierten linken Hand zeigten qualitativ die gleichen adaptationsbedingten Veränderungen wie Bewegungen der rechten Hand. Die Ergebnisse sprechen für die Annahme, dass beim Training der rechten Hand eine effektorunabhängige räumliche Repräsentation verändert wird, auf die bei der Steuerung beider Hände zurückgegriffen wird. N2 - Participants trained aiming movements of the right hand to several targets with a prism-like virtual displacement of the location of one of the targets, receiving either terminal or continuous visual feedback. After training, the same targets were to be reached with the untrained left hand under manipulated feedback conditions. The right hand movements continuously adapted to the unnoticed visual displacement, significantly less with continuous than with terminal feedback. Under terminal but not under continuous feedback the adaptation to the manipulated target generalized to targets in the same horizontal direction but not to targets in the opposite direction. Finally, the movements of the untrained left hand showed the same qualitative changes to the targets as the movements of the trained right hand. The data are in line with the notion that the adaptation of the right hand movements is mainly based on a re-interpretation of target locations on which movement control of both hands draws. KW - Motorisches Lernen KW - Bewegungssteuerung KW - Rückmeldung KW - Transfer KW - visuomotorische Transformation KW - intermanueller Transfer KW - Zielbewegungen KW - motor learning KW - intermanual transfer KW - aiming KW - visuomotor transformation KW - feedback Y1 - 2002 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-23889 ER - TY - THES A1 - Geiger, Markus T1 - The Geology of the southern Warmbad Basin Margin - Tephrostratigraphy, Age, Fossil Record and Sedimentary Environment of Carboniferous-Permian Glacigenic Deposits of the Dwyka Group, Zwartbas, southern Namibia N2 - At Zwartbas, about 10 km west of Vioolsdrif, southern Namibia, the Dwyka succession is composed of tillites and distal fossiliferous dropstone-bearing glacio-marine shales. The completely exposed Dwyka succession is interbedded with thin bentonites, altered distal pyroclastic deposits, which were derived from the magmatic arc at the southern rim of Gondwana. Dropstone-bearing and dropstonefree sequences intercalate with four diamictites, of which the two lowest were certainly recognised as tillites. Four events of deglaciation were proven at Zwartbas and thus consist with correlative deposits in southern Africa. Numerous fossilised fishes, trace fossils, and plant fragments appear frequently within the lower half of the Dwyka succession whereas trace fossils were principally found in the complete succession. Although the environmental determination is quite problematic, the fossil assemblage rather implies proximal, shallow water conditions with temporary restricted oxygenation. The hinterland was covered with considerable vegetation, which points to a moderate climate. Water salinity determinations based on shale geochemistry rectify contrary palaeontological results and point to rather brackish or non-marine conditions in comparison to present-day salinites. Geochemical analyses of the bentonites relate the pyroclastic deposits with acid to intermediate source magmas, as they are known from the magmatic arc in present-day Patagonia. Tectono-magmatic comparisons furthermore emphasise a syn-collision or volcanic-arc situation of the magma source. However, significant cyclicity in the production of the pyroclastic deposits was not observed. Radiometric age determinations of two tuff beds clearly date the onset of glacial activity into the Late Carboniferous. KW - Namibia KW - Karbon KW - Permokarbon KW - Vereisung KW - Tuff KW - Oranje KW - Fossil KW - Geochemie KW - Schwermineral KW - Diamiktit KW - Tillit KW - Tonstein KW - Dwyka KW - Carboniferous KW - Permian KW - Glaciation KW - Geochemistry KW - Petrography Y1 - 2000 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-46251 ER - TY - THES A1 - Geiger, Markus T1 - An Explanation of the Geological Map 1:10000 of the Namibian borderland along the Orange River at Zwartbas - Warmbad District - Karas Region - Namibia N2 - The locality of Zwartbas is situated at the border of Namibia and South Africa about 15 km west of Noordoewer. The mapped area is confined by the Tandjieskoppe Mountains in the north and the Orange River in the south. Outcropping rocks are predominantly sediments of the Nama Group and of the Karoo Supergroup. During the compilation of this paper doubts arose about the correct classification of the Nama rocks as it is found in literature. Since no certain clues were found to revise the classification of the Nama rocks, the original classification remains still valid. Thus the Kuibis and Schwarzrand Subgroup constitute the Nama succession and date it to Vendian age. A glacial unconformity represents a hiatus for about 260 Ma. This is covered by sediments of the Karoo Supergroup. Late Carboniferous and early Permian glacial deposits of diamictitic shale of the Dwyka and shales of the Ecca Group overlie the unconformity. The shales of the Dwyka Group contain fossiliferous units and volcanic ash-layers. A sill of the Jurassic Tandjiesberg Dolerite Complex (also Karoo Supergroup) intruded rocks at the Dwyka-Ecca-boundary. Finally fluvial and aeolian deposits and calcretes of the Cretaceous to Tertiary Kalahari Group and recent depositionary events cover the older rocks occasionally. N2 - Die Lokalität Zwartbas liegt an der namibisch-südafrikanischen Grenze, etwa 15 km westlich von Noordoewer. Das Kartiergebiet wird durch die Tandjiesberge im Norden und den Oranje Fluß im Süden begrenzt. Die anstehenden Gesteine bestehen hauptsächlich aus Sedimenten der Nama Gruppe und der Karoo Supergruppe. Während der Erarbeitung dieser Abhandlung entstanden Zweifel an der Klassifikation der Nama Gesteine, so wie sie in der Literatur zu finden ist. Da keine sicheren Hinweise zur Revision der Klassifikation der Nama Gesteine gefunden wurden, bleibt die ursprünglich Klassifikation jedoch gültig. Die Kuibis und Schwarzrand Untergruppe bilden also die Nama Abfolge und datieren sie ins Vendian. Eine glaziale Diskontinuität repräsentiert einen Hiatus von etwa 260 Mio Jahren. Sie wird überlagert von Sedimenten der Karoo Supergruppe. Spät-karbone und früh-permische glaziale Ablagerungen von diamiktitischen Tonsteinen der Dwyka Gruppe und Tonsteine der Ecca Gruppe liegen über dieser Diskontinuität. Die Sedimente der Dwyka Gruppe sind fossilführend und enthalten Tufflagen. Ein Sill des jurassischen Tandjiesberg Dolerit Komplex (auch Karoo Supergruppe) intrudierte in die Gesteine an der Dwyka-Ecca Grenze. Schließlich bedecken lokal fluviatile und äolische Ablagerungen und Kalkkrusten der kretazischen und tertiären Kalahari Gruppe und jüngerer Ablagerungsereignisse die älteren Gesteine. KW - Namibia KW - Karbon KW - Permokarbon KW - Vereisung KW - Tuff KW - Oranje KW - Fossil KW - Geochemie KW - Schwermineral KW - Diamiktit KW - Tillit KW - Tonstein KW - Präkambrium KW - Geologische Kartierung KW - Nama KW - Karoo KW - Dwyka KW - Mapping KW - glaciation Y1 - 1999 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-46269 ER -