TY - THES A1 - Wencker, Freya Dorothea Ruth T1 - The methionine biosynthesis operon in \(Staphylococcus\) \(aureus\): Role of concerted RNA decay in transcript stability and T-box riboswitch turnover T1 - Das Methioninbiosynthese-Operon in \(Staphylococcus\) \(aureus\): Der Einfluss von koordiniertem RNA Abbau auf Transkriptstabilität und T-Box-Riboswitch-Prozessierung N2 - Methionine is the first amino acid of every newly synthesised protein. In combination with its role as precursor for the vital methyl-group donor S-adenosylmethionine, methionine is essential for every living cell. The opportunistic human pathogen Staphylococcus aureus is capable of synthesising methionine de novo, when it becomes scarce in the environment. All genes required for the de novo biosynthesis are encoded by the metICFE-mdh operon, except for metX. Expression is controlled by a hierarchical network with a methionyl-tRNA-specific T-box riboswitch (MET-TBRS) as centrepiece, that is also referred to as met leader (RNA). T-box riboswitches (TBRS) are regulatory RNA elements located in the 5’-untranslated region (5’-UTR) of genes. The effector molecule of T-box riboswitches is uncharged cognate tRNA. The prevailing mechanism of action is premature termination of transcription of the nascent RNA in the absence of the effector (i.e. uncharged cognate tRNA) due to formation of a hairpin structure, the Terminator stem. In presence of the effector, a transient stabilisation of the alternative structure, the Antiterminator, enables transcription of the downstream genes (‘read-through’). Albeit, after the read-through the thermodynamically more stable Terminator eventually forms. The Terminator and the Antiterminator are two mutually exclusive structures. Previous work of the research group showed that in staphylococci the MET-TBRS ensures strictly methionine-dependent control of met operon expression. Uncharged methionyl-tRNA that activates the system is only present in sufficient amounts under methionine-deprived conditions. In contrast to other bacterial TBRS, the staphylococcal MET-TBRS has some characteristic features regarding its length and predicted secondary structure whose relevance for the function are yet unkown. Aim of the present thesis was to experimentally determine the structure of the met leader RNA and to investigate the stability of the met operon-specific transcripts in the context of methionine biosynthesis control. Furthermore, the yet unknown function of the mdh gene within the met operon was to be determined. In the context of this thesis, the secondary structure of the met leader was determined employing in-line probing. The structural analysis revealed the presence of almost all highly conserved T-box riboswitch structural characteristics. Furthermore, three additional stems, absent in all T-box riboswitches analysed to date, could be identified. Particularly remarkable is the above average length of the Terminator stem which renders it a potential target of the double-strand-specific endoribonuclease III (RNase III). The RNase III-dependent cleavage of the met leader could be experimentally verified by the use of suitable mutants. Moreover, the exact cleavage site within the Terminator was determined. The unusual immediate separation of the met leader from the met operon mRNA via the RNase III cleavage within the Terminator stem induces the rapid degradation of the met leader RNA and, most likely, that of the 5’-region of the met mRNA. The met mRNA is degraded from its 5’-end by the exoribonuclease RNase J. The stability of the met mRNA was found to vary over the length of the transcript with an instable 5’-end (metI and metC) and a longer half-life towards the 3’-end (metE and mdh). The varying transcript stability is reflected by differences in the available cellular protein levels. The obtained data suggest that programmed mRNA degradation is another level of regulation in the complex network of staphylococcal de novo methionine biosynthesis control. In addition, the MET-TBRS was studied with regard to a future use as a drug target for novel antimicrobial agents. To this end, effects of a dysregulated methionine biosynthesis on bacterial growth and survival were investigated in met leader mutants that either caused permanent transcription of the met operon (‘ON’) or prevented operon transcription (‘OFF’), irrespective of the methionine status in the cell. Methionine deprivation turned out to be a strong selection pressure, as ‘OFF’ mutants acquired adaptive mutations within the met leader to restore met operon expression that subsequently re-enabled growth. The second part of the thesis was dedicated to the characterisation of the Mdh protein that is encoded by the last gene of the met operon and whose function is unknown yet. At first, co-transcription and -expression with the met operon could be demonstrated. Next, the Mdh protein was overexpressed and purified and the crystal structure of Mdh was solved to high resolution by the Kisker research group (Rudolf-Virchow-Zentrum Würzburg). Analysis of the structure revealed the amino acid residues crucial for catalytic activity, and zinc was identified as a co-factor of Mdh. Also, Mdh was shown to exist as a dimer. However, identification of the Mdh substrate was, in the context of this thesis, (still) unsuccessful. Nevertheless, interactions of Mdh with enzymes of the met operon could be demonstrated by employing the bacterial two-hybrid system. This fact and the high conservation of mdh/Mdh on nucleotide and amino acid level among numerous staphylococcal species suggests an important role of Mdh within the methionine metabolism that should be a worthwhile subject of future research. N2 - Methionin ist die erste Aminosäure in jedem neu gebildeten Protein. Zusammen mit seiner Funktion als Vorläufermolekül für die Synthese des essenziellen Methylgruppendonors S-Adenosylmethionin ist Methionin damit für jede lebende Zelle unverzichtbar. Staphylococcus aureus, ein opportunistisches Humanpathogen, ist in der Lage, Methionin de novo zu synthetisieren, wenn es nicht in ausreichender Menge in der Umgebung vorhanden ist. Mit Ausnahme von MetX sind alle für die Methioninsynthese benötigten Enzyme im metICFE-mdh-Operon kodiert. Die Expression des Operons wird durch ein komplexes hierarchisches Netzwerk reguliert, dessen zentrales Steuerelement ein Methionyl-tRNA-spezifischer T-Box-Riboswitch (MET-TBRS) ist, der auch als met-leader (RNA) bezeichnet wird. T-Box Riboswitches (TBRS) sind regulatorische RNA-Elemente, die in der untranslatierten Region am 5'-Ende (5'-UTR) ihrer zu kontrollierenden Gene liegen. Sie nutzen unbeladene tRNAs als Effektormoleküle. Die Funktionsweise der meisten TBRS beruht auf dem vorzeitigen Abbruch der Transkription der naszierenden mRNA, der durch die Ausbildung einer Haarnadelstruktur (Terminator) im Transkript herbeigeführt wird, wenn das Effektormolekül (i.e. unbeladene tRNA) fehlt. Sobald passende unbeladene tRNA verfügbar ist und bindet, wird eine alternative Struktur, der Antiterminator, kurzzeitig stabilisiert, der die Transkription und damit ein "Durchlesen" in die stromabwärtsliegenden Gene ermöglicht. Terminator und Antiterminator sind zwei sich gegenseitig ausschließende Strukturen, wobei der Terminator die thermodynamisch deutlich stabilere Struktur des TBRS ist, die sich dementsprechend auch in den vollständigen Transkripten erneut ausbildet. Bisherige Vorarbeiten der Arbeitsgruppe zeigten, dass in Staphylokokken der MET-TBRS die Kontrolle der Methioninsynthese in strikter Abhängigkeit von Methionin gewährleistet. Unbeladene Methionyl-tRNA, die nur unter Methioninmangelbedingungen in ausreichenden Konzentrationen vorliegt, aktiviert das System. Im Unterschied zu anderen bakteriellen TBRS weist der Staphylokokken-MET-TBRS (met-leader) hinsichtlich seiner Länge und vorhergesagten Struktur einige Besonderheiten auf, deren Bedeutung für die Funktion bislang unklar sind. Ziel der vorliegenden Arbeit war es daher, die Struktur der met-leader-RNA experimentell zu bestimmen und die Stabilität met-Operon-spezifischer Transkripte im Kontext der Methioninbiosynthesekontrolle zu untersuchen. Ebenso sollte die bisher unbekannte Funktion des mdh-Genes im Operon aufgeklärt werden. Im Rahmen dieser Doktorarbeit wurde die Sekundärstruktur der met-leader-RNA mit Hilfe des so genannten In-line Probings bestimmt. Die Sekundärstruktur weist neben fast allen hochkonservierten Strukturmerkmalen eines T-Box-Riboswitches auch drei zusätzliche Haarnadelstrukturen auf, die bisher in keinem anderen T-Box-Riboswitch gefunden wurden. Besonders auffällig ist die überdurchschnittliche Länge des met-leader-Terminators, der dadurch zur potentiellen Zielstruktur für die Doppelstrang-spezifische Endoribonuklease RNase III wird. Mittels geeigneter Mutanten konnte die RNase III-abhängige Prozessierung der met-leader-RNA experimentell bewiesen werden. Ebenso wurde die exakte Schnittstelle im Terminator bestimmt. Die ungewöhnliche Prozessierung des Terminators durch die RNase III spaltet die met-leader-RNA von der met-mRNA ab, was den raschen weiteren Abbau der met-leader-RNA und sehr wahrscheinlich auch den der met-mRNA einleitet. So wird die met-mRNA durch die Exoribonuklease RNase J vom 5'-Ende her abgebaut, wobei die Stabilität bezogen auf die Gesamtheit des Moleküls stark variiert: Das 5'-Ende mit den Genen metI und metC wird äußerst schnell degradiert, während das 3'-Ende mit metE und mdh deutlich stabiler ist. Die variierende mRNA-Stabilität spiegelt sich auch in Unterschieden hinsichtlich der verfügbaren zellulären Proteinmengen wider. Die Daten legen daher nahe, dass programmierte mRNA-Degradation eine weitere Ebene im komplexen Kontrollnetzwerk darstellt, durch die in Staphylokokken die Methioninbiosynthese sehr exakt den jeweiligen Bedürfnissen angepasst wird. Des Weiteren wurde der MET-TBRS im Hinblick auf eine zukünftige Nutzung als Angriffspunkt für neue antibakterielle Wirkstoffe untersucht. Dazu wurden die Auswirkungen einer dysregulierten Methioninbiosynthese auf das bakterielle Wachstum und Überleben mit Hilfe von met-leader-Mutanten analysiert, die entweder zu einer permanenten Aktivierung („ON“) oder Deaktivierung („OFF“) der met-Operon-Transkription, unabhängig vom Methioninstatus in der Zelle, führten. Es zeigte sich, dass Methioninmangel einen starken Selektionsdruck darstellt, da die „OFF“-Mutanten in der Lage waren, durch den Erwerb von adaptiven Mutationen innerhalb der met-leader-Sequenz, das met-Operon erneut zu aktivieren und wieder zu wachsen. Der zweite Teil dieser Arbeit widmete sich der Charakterisierung des Mdh-Proteins, das im letzten Gen des met-Operons kodiert ist und dessen Funktion derzeit gänzlich unbekannt ist. Zunächst konnte die Kotranskription und -expression von mdh mit dem met-Operon gezeigt werden. In Zusammenarbeit mit der Arbeitsgruppe Kisker (Rudolf-Virchow-Zentrum Würzburg) wurden anhand von Kristallstrukturanalysen die Aminosäuren identifiziert, die entscheidend für die katalytische Aktivität des Mdh-Enzyms sind, wobei Zink als ein Kofaktor fungiert. Ebenso zeigte sich, dass Mdh als Dimer vorliegt. Allerdings ist die Identifizierung des Mdh-Substrates im Rahmen dieser Arbeit (noch) nicht gelungen. Mittels eines bakteriellen Zwei-Hybridsystems wurde jedoch nachgewiesen, dass Mdh mit den anderen Enzymen des met-Operons interagiert. Dies und die hohe Konservierung von mdh/Mdh auf Nukleotid- und Aminosäureebene in verschiedenen Staphylokokkenarten legt eine wichtige Funktion von Mdh im Methioninstoffwechsel nahe, die lohnenswerter Gegendstand weiterer Untersuchungen sein sollte. KW - Staphylococcus aureus KW - RNA Abbau KW - Methioninbiosynthese KW - MET-T-box riboswitch KW - riboswitch KW - methionine biosynthesis KW - RNA decay Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-207124 ER - TY - JOUR A1 - Bauriedl, Saskia A1 - Gerovac, Milan A1 - Heidrich, Nadja A1 - Bischler, Thorsten A1 - Barquist, Lars A1 - Vogel, Jörg A1 - Schoen, Christoph T1 - The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognition JF - Nature Communications N2 - FinO-domain proteins are a widespread family of bacterial RNA-binding proteins with regulatory functions. Their target spectrum ranges from a single RNA pair, in the case of plasmid-encoded FinO, to global RNA regulons, as with enterobacterial ProQ. To assess whether the FinO domain itself is intrinsically selective or promiscuous, we determine in vivo targets of Neisseria meningitidis, which consists of solely a FinO domain. UV-CLIP-seq identifies associations with 16 small non-coding sRNAs and 166 mRNAs. Meningococcal ProQ predominantly binds to highly structured regions and generally acts to stabilize its RNA targets. Loss of ProQ alters transcript levels of >250 genes, demonstrating that this minimal ProQ protein impacts gene expression globally. Phenotypic analyses indicate that ProQ promotes oxidative stress resistance and DNA damage repair. We conclude that FinO domain proteins recognize some abundant type of RNA shape and evolve RNA binding selectivity through acquisition of additional regions that constrain target recognition. FinO-domain proteins are bacterial RNA-binding proteins with a wide range of target specificities. Here, the authors employ UV CLIP-seq and show that minimal ProQ protein of Neisseria meningitidis binds to various small non-coding RNAs and mRNAs involved in virulence. KW - Neisseria meningitidis KW - natural transformation KW - dual function KW - FinO family KW - HFQ KW - chaperone KW - transcriptome KW - regulator KW - sequence KW - in vivo Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-230040 VL - 11 ER - TY - THES A1 - Ngwa, Che Julius T1 - The mosquito midgut-specific stages of the malaria parasite as targets for transmission blocking interventions T1 - Die Moskitomitteldarmstadien des Malariaparasiten als Ziele für übertragungsblockierende Eingriffe N2 - Die Tropenkrankheit Malaria, wird durch eine Infektion mit einzelligen Parasiten der Gattung Plasmodium verursacht und durch den Stich der weiblichen Anopheles-Mücke von Mensch zu Mensch verbreitet. Dabei kann eine erfolgreiche Übertragung des Parasiten auf den Menschen nur dann stattfinden, wenn der Parasit seine sexuelle Entwicklungsphase im Mitteldarm der Mücke erfolgreich durchläuft. Ziel dieser Arbeit war es daher, die Wechselwirkungen des Malariaparasiten im Mitteldarm der Mücke in Hinblick auf die Identifizierung möglicher neuer transmissionsblockierender Strategien zu untersuchen. Der Zweck von transmissionsblockierende Strategien ist es, der Verbreitung der Malaria durch die Mücke entgegenzuwirken, indem die Entwicklung des Parasiten in der Mücke unterbunden und dadurch der Lebenszyklus des Parasiten unterbrochen wird. Der Schwerpunkt der vorliegenden Arbeit lag auf insgesamt drei Aspekten. Der erste Aspekt der Arbeit befasste sich mit der Wechselwirkung zwischen dem Para-siten und der mikrobiellen Darmflora der Mücke. Dabei sollte der mögliche Einfluss des Parasiten auf die Darmflora untersucht werden und weiterführend die potentielle Verwendung von Darmbakterien als Vehikel für die Herstellung paratransgener Mücken erforscht werden. Vergleichende16S-rRNA- und DGGE-Analysen an der Darmflora des asiatischen Malariavektors Anopheles stephensi zeigten eine deutliche Reduktion der mikrobiellen Diversität während der Entwicklung vom Ei zur adulten Mücke. Zudem konnte das gram-negative Bakterium Elizabethkingia meningoseptica, das sich stadien- und generationsübergreifend verbreitet, als dominante Darmspezies bei im Labor aufgezogenen weiblichen und männlichen An. stephensi festgestellt werden. Die Dominanz von E. meningoseptica wurde zudem nicht durch die Aufnahme von infiziertem Blut oder einer veränderten Nahrung beeinflusst. Für die Studien wurde sowohl der humanpathogene Parasit P. falciparum als auch der Nagermalariaerreger P. berghei verwendet. Weiterführende Versuche zeigten, dass Extrakte von E. meningoseptica antibakterielle, antifungale und antiplasmodiale Aktivitäten aufwiesen, die ein möglicher Grund für die Dominanz dieser Spezies im Mitteldarm des Vektors waren. Isolate von E. meningoseptica sind im Labor kultivierbar; dadurch stellt das Bakterium einen potentiellen Kandidaten zur Generierung von paratransgenen Anopheles-Mücken dar. Ein zweites Ziel dieser Arbeit war es, mögliche Unterschiede in der Genexpression von P. falciparum darzustellen, die in den ersten 30 Minuten nach dessen Übertragung auf die Mücke erfolgen. Dies hatte zum einen zum Zweck, die durch den Wirtswechsel hervorgerufenen Genregulationen besser zu verstehen, und bot zum anderen die Möglichkeit, neue Proteine zu identifizieren, die als potentielle transmissionsblockierende Ziele genutzt werden können. Mittels supression substractive hybridization (SSH) konnten insgesamt 126 Gene identifiziert werden, deren Expression sich während der Gametogenese verändert. Die identifizierten Gene konnten einer Vielzahl von putativen Funktionen wie zum Beispiel in der Signaltransduktion (17,5%), im Zellzyklus (14,3%) oder im Zytoskelett (8,7%) zugeordnet werden. Des Weiteren wurden 7,9% der Gene eine Funktion in der Proteastase und 6,4% in metabolischen Prozessen zugeordnet. 12,7% der Gene kodierten für zelloberflächenassoziierte Proteine. 11,9% der Gene hatten anderen Funktionen, während 20% der Gene keine putative Funktion zugeordnet werden konnte. Etwa 40% der identifizierten Genprodukte waren bisher nicht in Proteomstudien nachgewiesen worden. In weiterführenden Analysen wurden 34 Gene aus jeder ontologischen Gruppe ausgewählt und deren Expressionsveränderung per quantitativer real time RT-PCR im Detail untersucht. Für 29 Gene konnte dabei eine Transkriptexpression in Gametozyten nachgewiesen werden. Zudem wiesen 20 Gene eine erhöhte Expression in Gametozyten im Vergleich asexuellen Stadien auf. Insgesamt zeigten 8 Gene besonders hohe Transkriptlevel in aktivierten Gametozyten, was auf eine Funktion dieser Proteine während der Übertragung des Parasiten auf die Mücke hindeutet und diese somit potentielle Angriffspunkte für transmissionsblockierende Strategien darstellen könnten. Im letzten Teil dieser Arbeit stand die Untersuchung verschiedener antimikrobieller Substanzen in Bezug auf ihre transmissionsblockierenden Eigenschaften im Vordergrund. Die Substanzen waren entweder direkt aus der Hämolymphe verschiedener Insekten isoliert oder rekombinant in transgenem Tabak exprimiert worden. Dabei wurden die rekombinanten Peptide so ausgewählt, dass sie entweder gegen die Mitteldarmstadien des Parasiten wirken oder mückenspezifische Rezeptoren blockieren, die der Parasit für seine weitere Entwicklung benötigt. Dabei konnte gezeigt werden, dass das antimikrobielle Molekül Harmonin, ein Abwehrmolekül aus der Hämolymphe des asiatischen Marienkäfers Harmonia axyridis, antiplasmodiale als auch transmissions-blockierende Eigenschaften besitzt. Harmonin stellt daher eine potentielle Leitstruktur für die Entwicklung neuer Malariawirkstoffe dar N2 - Malaria is a vector-borne disease caused by the protozoan parasite of the genus Plasmodium and it is transmitted from human to human by female Anopheles mosquitoes during a blood meal. For malaria transmission to occur, the malaria parasite must undergo a crucial developmental sexual phase inside the mosquito midgut. In this study, we sought to investigate the interplay of the malaria parasite in the mosquito midgut with regard to the identification of novel types of transmission blocking intervention strategies. These strategies are aimed at reducing the spread of malaria by blocking the development of the mosquito midgut-specific stages of Plasmodium. We focused on three aspects. The first aspect was to investigate the interplay between mosquito midgut bacteria and malaria parasites in order to determine the potential influence of malaria parasites on the composition of the mosquito gut microbiota and also determine midgut bacteria which could be exploited as vehicles for the generation of paratransgenic Anopheles mosquitoes. We analyzed the microbial diversity of gut bacteria of the Asian malaria vector Anopheles stephensi during development and under different feeding regimes, including feeds on malaria parasite-infected blood, using the human pathogenic P. falciparum as well as the rodent malaria model P. berghei. 16S rRNA and DGGE analyses demonstrated a reduction in the microbial diversity during mosquito development from egg to adult and identified the gram-negative bacterium Elizabethkingia meningoseptica as the dominant species in the midgut of laboratory-reared male and female mosquitoes. E. meningoseptica is transmitted between generations and its predominance in the mosquito midgut was not altered by diet, when the gut microbiota was compared between sugar-fed and blood-fed female mosquitoes. Furthermore, feeds on blood infected with malaria parasites did not impact the presence of E. men-ingoseptica in the gut. Interestingly, extracts from E. meningoseptica exhibited antibacterial, antifungal and antiplasmodial activities, which may account for its dominance in the midgut of the malaria vector. Isolates of E. meningoseptica were cultivable, making the bacterium a potential candidate vehicle for the generation of paratransgenic Anopheles mosquitoes. The second aspect of this thesis was to determine transcriptome changes that occur during the first half hour following transmission of P. falciparum to the mosquito vector in order to better understand gene regulation mechanisms important for the change of hosts and determine novel proteins which could be exploited in malaria transmission blocking interventions. We initially used suppression subtractive hybridization (SSH) to compare mRNA levels of P. falciparum gametocytes before and 30 min fol-lowing activation. We identified a total of 126 genes for which transcript expression changed during gametogenesis. Among these, 17.5% had putative functions in signaling, 14.3% were assigned to cell cycle and gene expression, 8.7% were linked to the cytoskeleton or motor complex, 7.9% were involved in proteostasis and 6.4% in metabolism, 12.7% were genes encoding for cell surface associated proteins, 11.9% were assigned to other functions, and 20.6% represented genes of unknown function. For 40% of the identified genes there has as yet not been any protein evidence. We further selected a subset of 34 genes from all the above ontology groups and analyzed the transcript changes during gametogenesis in detail by quantitative realtime RT-PCR. Of these, 29 genes were expressed in gametocytes, and for 20 genes transcript expres-sion in gametocytes was increased compared to asexual blood stage parasites. Transcript levels of eight genes were particularly high in activated gametocytes, pointing at functions downstream of gametocyte transmission to the mosquito which could be exploited in malaria transmission blocking strategies. The last aspect of this thesis was to determine the transmission blocking effect of a range of antimicrobial molecules as transmission blocking agents. The molecules were either isolated from insect hemolymph or recombinantly expressed in tobacco and designed to act either directly on the mosquito midgut stages or cover receptors on mosquito tissues like the midgut epithelium which the parasite would need for transit. We were able to show an antiplasmodial and transmission blocking effect of the anti-microbial molecule harmonine, a defense compound isolated from the hemolymph of the Asian ladybug Harmonia axyridis. Harmonine thus represents a potential lead structure for the development of novel antimalarials. KW - Malariamücke KW - Anopheles stephensi KW - Mitteldarm KW - Malaria KW - Mosquito KW - midgut KW - transmission KW - Malaria KW - Krankheitsübertragung KW - Mücke KW - Mitteldarm Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-83594 ER - TY - JOUR A1 - Sanyal, Anirban A1 - Wallaschek, Nina A1 - Glass, Mandy A1 - Flamand, Louis A1 - Wight, Darren J. A1 - Kaufer, Benedikt B. T1 - The ND10 Complex Represses Lytic Human Herpesvirus 6A Replication and Promotes Silencing of the Viral Genome JF - Viruses N2 - Human herpesvirus 6A (HHV-6A) replicates in peripheral blood mononuclear cells (PBMCs) and various T-cell lines in vitro. Intriguingly, the virus can also establish latency in these cells, but it remains unknown what influences the decision between lytic replication and the latency of the virus. Incoming virus genomes are confronted with the nuclear domain 10 (ND10) complex as part of an intrinsic antiviral response. Most herpesviruses can efficiently subvert ND10, but its role in HHV-6A infection remains poorly understood. In this study, we investigated if the ND10 complex affects HHV-6A replication and contributes to the silencing of the virus genome during latency. We could demonstrate that ND10 complex was not dissociated upon infection, while the number of ND10 bodies was reduced in lytically infected cells. Virus replication was significantly enhanced upon knock down of the ND10 complex using shRNAs against its major constituents promyelocytic leukemia protein (PML), hDaxx, and Sp100. In addition, we could demonstrate that viral genes are more efficiently silenced in the presence of a functional ND10 complex. Our data thereby provides the first evidence that the cellular ND10 complex plays an important role in suppressing HHV-6A lytic replication and the silencing of the virus genome in latently infected cells. KW - human herpesvirus 6 KW - ND10 complex KW - PML KW - lytic replication KW - latency KW - PML nuclear-bodies KW - gene-expression KW - virus-infection KW - in-vitro KW - DNA Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-227337 VL - 10 IS - 8 ER - TY - JOUR A1 - Ibrahim, Eslam S. A1 - Ohlsen, Knut T1 - The old yellow enzyme OfrA fosters Staphylococcus aureus survival via affecting thiol-dependent redox homeostasis JF - Frontiers in Microbiology N2 - Old yellow enzymes (OYEs) are widely found in the bacterial, fungal, and plant kingdoms but absent in humans and have been used as biocatalysts for decades. However, OYEs’ physiological function in bacterial stress response and infection situations remained enigmatic. As a pathogen, the Gram-positive bacterium Staphylococcus aureus adapts to numerous stress conditions during pathogenesis. Here, we show that in S. aureus genome, two paralogous genes (ofrA and ofrB) encode for two OYEs. We conducted a bioinformatic analysis and found that ofrA is conserved among all publicly available representative staphylococcal genomes and some Firmicutes. Expression of ofrA is induced by electrophilic, oxidative, and hypochlorite stress in S. aureus. Furthermore, ofrA contributes to S. aureus survival against reactive electrophilic, oxygen, and chlorine species (RES, ROS, and RCS) via thiol-dependent redox homeostasis. At the host–pathogen interface, S. aureusΔofrA has defective survival in macrophages and whole human blood and decreased staphyloxanthin production. Overall, our results shed the light onto a novel stress response strategy in the important human pathogen S. aureus. KW - MRSA KW - blood KW - phagocytes KW - quinone KW - ROS KW - stress response KW - electrophilic stress Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-274381 SN - 1664-302X VL - 13 ER - TY - JOUR A1 - Heidrich, Nadja A1 - Bauriedl, Saskia A1 - Barquist, Lars A1 - Li, Lei A1 - Schoen, Christoph A1 - Vogel, Jörg T1 - The primary transcriptome of Neisseria meningitidis and its interaction with the RNA chaperone Hfq JF - Nucleic Acids Research N2 - Neisseria meningitidis is a human commensal that can also cause life-threatening meningitis and septicemia. Despite growing evidence for RNA-based regulation in meningococci, their transcriptome structure and output of regulatory small RNAs (sRNAs) are incompletely understood. Using dRNA-seq, we have mapped at single-nucleotide resolution the primary transcriptome of N. meningitidis strain 8013. Annotation of 1625 transcriptional start sites defines transcription units for most protein-coding genes but also reveals a paucity of classical σ70-type promoters, suggesting the existence of activators that compensate for the lack of −35 consensus sequences in N. meningitidis. The transcriptome maps also reveal 65 candidate sRNAs, a third of which were validated by northern blot analysis. Immunoprecipitation with the RNA chaperone Hfq drafts an unexpectedly large post-transcriptional regulatory network in this organism, comprising 23 sRNAs and hundreds of potential mRNA targets. Based on this data, using a newly developed gfp reporter system we validate an Hfq-dependent mRNA repression of the putative colonization factor PrpB by the two trans-acting sRNAs RcoF1/2. Our genome-wide RNA compendium will allow for a better understanding of meningococcal transcriptome organization and riboregulation with implications for colonization of the human nasopharynx. KW - RNA KW - Neisseria meningitidis KW - dRNA-seq KW - transcriptome KW - RNA chaperone Hfq Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170828 VL - 45 IS - 10 ER - TY - JOUR A1 - Makoah Nigel, Animake A1 - Arndt, Hans-Dieter A1 - Pradel, Gabriele T1 - The proteasome of malaria parasites: A multi-stage drug target for chemotherapeutic intervention? JF - International Journal for Parasitology: Drugs and Drug Resistance N2 - The ubiquitin/proteasome system serves as a regulated protein degradation pathway in eukaryotes, and is involved in many cellular processes featuring high protein turnover rates, such as cell cycle control, stress response and signal transduction. In malaria parasites, protein quality control is potentially important because of the high replication rate and the rapid transformations of the parasite during life cycle progression. The proteasome is the core of the degradation pathway, and is a major proteolytic complex responsible for the degradation and recycling of non-functional ubiquitinated proteins. Annotation of the genome for Plasmodium falciparum, the causative agent of malaria tropica, revealed proteins with similarity to human 26S proteasome subunits. In addition, a bacterial ClpQ/hslV threonine peptidase-like protein was identified. In recent years several independent studies indicated an essential function of the parasite proteasome for the liver, blood and transmission stages. In this review, we compile evidence for protein recycling in Plasmodium parasites and discuss the role of the 26S proteasome as a prospective multi-stage target for antimalarial drug discovery programs. KW - plasmodium falciparum KW - proteasome KW - ubiquitin KW - inhibitor Y1 - 2012 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-137777 VL - 2 ER - TY - JOUR A1 - Ramírez-Zavala, Bernardo A1 - Krüger, Ines A1 - Dunker, Christine A1 - Jacobsen, Ilse D. A1 - Morschhäuser, Joachim T1 - The protein kinase Ire1 has a Hac1-independent essential role in iron uptake and virulence of Candida albicans JF - PLoS Pathogens N2 - Protein kinases play central roles in virtually all signaling pathways that enable organisms to adapt to their environment. Microbial pathogens must cope with severely restricted iron availability in mammalian hosts to invade and establish themselves within infected tissues. To uncover protein kinase signaling pathways that are involved in the adaptation of the pathogenic yeast Candida albicans to iron limitation, we generated a comprehensive protein kinase deletion mutant library of a wild-type strain. Screening of this library revealed that the protein kinase Ire1, which has a conserved role in the response of eukaryotic cells to endoplasmic reticulum stress, is essential for growth of C. albicans under iron-limiting conditions. Ire1 was not necessary for the activity of the transcription factor Sef1, which regulates the response of the fungus to iron limitation, and Sef1 target genes that are induced by iron depletion were normally upregulated in ire1Δ mutants. Instead, Ire1 was required for proper localization of the high-affinity iron permease Ftr1 to the cell membrane. Intriguingly, iron limitation did not cause increased endoplasmic reticulum stress, and the transcription factor Hac1, which is activated by Ire1-mediated removal of the non-canonical intron in the HAC1 mRNA, was dispensable for Ftr1 localization to the cell membrane and growth under iron-limiting conditions. Nevertheless, expression of a pre-spliced HAC1 copy in ire1Δ mutants restored Ftr1 localization and rescued the growth defects of the mutants. Both ire1Δ and hac1Δ mutants were avirulent in a mouse model of systemic candidiasis, indicating that an appropriate response to endoplasmic reticulum stress is important for the virulence of C. albicans. However, the specific requirement of Ire1 for the functionality of the high-affinity iron permease Ftr1, a well-established virulence factor, even in the absence of endoplasmic reticulum stress uncovers a novel Hac1-independent essential role of Ire1 in iron acquisition and virulence of C. albicans. KW - protein kinase KW - Ire1 KW - Candida albicans Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-300225 VL - 18 IS - 2 ER - TY - THES A1 - Reuter-Weissenberger, Philipp T1 - The role of a fungal-specific transcription regulator on vacuolar biology and host interaction in \(Candida\) \(albicans\) T1 - Die Rolle eines pilzspezifischen Transkriptionsfaktors für die Vakuole und Wirtsinteraktion von \(Candida\) \(albicans\) N2 - Microorganisms that colonize the human body face large fluctuations in their surroundings. Therefore, those microbes developed sophisticated mechanisms that allow them to adapt their cell biology and maintain cellular homeostasis. One organelle vital to preserve cell physiology is the vacuole. The vacuole exhibits a wide range of functions and is able to adjust itself in response to both external and internal stimuli. Moreover, it plays an important role in host interaction and virulence in fungi such as Candida albicans. Despite this connection, only a few regulatory proteins have been described to modulate vacuolar biology in fungal pathogens. Furthermore, whether such regulation alters fungus-host interplay remains largely unknown. This thesis focuses on the characterization of ZCF8, a fungus-specific transcription regulator in the human-associated yeast C. albicans. To this end, I combined genome-wide protein-DNA interaction assays and gene expression analysis that identified genes regulated by Zcf8p. Fluorescence microscopy uncovered that several top targets of Zcf8p localize to the fungal vacuole. Moreover, deletion and overexpression of ZCF8 resulted in alterations in vacuolar morphology and in luminal pH and rendered the fungus resistant or susceptible to a vacuole-disturbing drug. Finally, in vitro adherence assays showed that Zcf8p modulates the attachment of C. albicans to human epithelial cells in a vacuole-dependent manner. Given those findings, I posit that the previously uncharacterized transcription regulator Zcf8p modulates fungal attachment to epithelial cells in a manner that depends on the status of the fungal vacuole. Furthermore, the results highlight that vacuolar physiology is a substantial factor influencing the physical interaction between Candida cells and mammalian mucosal surfaces. N2 - Mikroorganismen, die den Menschen besiedeln, sind großen Schwankungen in ihrer Umgebung ausgesetzt. Daher haben sie ausgeklügelte Mechanismen entwickelt, die es ihnen ermöglichen, ihre Zellbiologie anzupassen und die zelluläre Homöostase aufrechtzuerhalten. Eine für die Aufrechterhaltung der Zellphysiologie wichtige Organelle ist die Vakuole. Sie verfügt über ein breites Spektrum an Funktionen und ist in der Lage, auf externe und interne Stimuli zu reagieren. Außerdem spielt dieses Organell eine wichtige Rolle bei der Pilz-Wirt-Interaktion und somit für die Pathogenität von Pilzen wie Candida albicans. Trotz dieses Zusammenhangs wurden bisher nur wenige regulatorische Proteine beschrieben, welche die Biologie der Vakuolen in pathogenen Pilzen modulieren. Zudem ist weitgehend unbekannt, ob eine solche Regulierung das Zusammenspiel von Pilz und Wirt verändert. Diese Arbeit konzentriert sich auf die Charakterisierung von ZCF8, einem pilzspezifischen Transkriptionsregulator in der pathogenen Hefe C. albicans. Zu diesem Zweck wurden Protein-DNA-Interaktionstests und Genexpressionsanalysen kombiniert, um Gene zu identifizieren, die direkt von Zcf8p reguliert werden. Fluoreszenzmikroskopie zeigte zudem, dass mehrere der wichtigsten Ziele von Zcf8p in der Pilzvakuole lokalisiert sind. Darüber hinaus führte die Deletion und Überexpression von ZCF8 zu Veränderungen der Morphologie und des luminalen pH-Werts der Vakuole, und veränderte die Sensitivität des Pilzes gegenüber Stoffen, welche Funktionen der Vakuole beeinträchtigen. Schließlich deuteten In-vitro-Adhärenztests daraufhin, dass Zcf8p die Anheftung von C. albicans an menschliche Epithelzellen auf eine Weise moduliert, die abhängig von der Vakuole ist. Angesichts dieser Ergebnisse kann davon ausgegangen werden, dass der bisher unbekannte Transkriptionsregulator ZCF8 die Interaktion zwischen Pilz- und Epithelzellen des Wirts kontrolliert, und das auf eine Weise, die von der Pilzvakuole abhängig ist. Des Weiteren, unterstreichen die Ergebnisse, dass die Physiologie der Vakuole ein wesentlicher Faktor ist, welcher die Interaktion zwischen C. albicans und dem Wirt beeinflusst. KW - Vakuole KW - Transkriptionsfaktor KW - Candida albicans KW - vacuole KW - host colonization KW - Candida albicans KW - transcription regulator Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-259287 ER - TY - JOUR A1 - König, W A1 - Scheffer, J. A1 - Bremm, K. D. A1 - Hacker, Jörg A1 - Goebel, W. T1 - The role of bacterial adherence and toxin production from E. coli on leukotriene generation from human polymorphonuclear granulocytes N2 - No abstract available Y1 - 1985 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-40295 ER - TY - THES A1 - Keller, Christian T1 - The role of dendritic cells in the immunoregulation of leishmaniasis - transfection of dendritic cells with mRNA encoding a molecularly defined parasitic antigen T1 - Die Rolle dendritischer Zellen in der Immunregulation der Leishmaniose - Transfektion dendritischer Zellen mit mRNA eines molekular definierten Parasitenantigens N2 - Die kutane Leishmaniose ist eine Infektionskrankheit, die besonders in tropischen und Wüstenregionen endemisch ist, mit einer Inzidenz von 1,5 Millionen Fällen im Jahr und einer Prävalenz von 12 Millionen Infizierten weltweit. Die Infektion kann durch den intrazellulären Parasiten Leishmania major hervorgerufen werden. Am Mausmodell ist die Krankheit ausführlich untersucht. Wie dabei deutlich wurde, ist für die Immunität gegen den Erreger die Induktion einer Klasse von Interferon (IFN)--produzierenden CD4+ T-Helfer-Zellen (TH1-Zellen) entscheidend, welche Makrophagen dazu aktivieren, die von ihnen beherbergten Parasiten abzutöten. Die Umlenkung der Immunantwort in Richtung einer schützenden TH1-Antwort wird auch der Schlüssel zu einem effektiven Impfstoff sein. Ex vivo mit Leishmanienantigenen beladene dendritische Zellen sind vor einiger Zeit als Vakzine gegen L. major-Infektionen beschrieben worden. Ein einzelnes rekombinantes Antigen, LeIF (Leishmania homologue of eukaryotic ribosomal initiation factor 4a), ein parasitäres Protein, das die IL-12-Produktion durch dendritische Zellen stimuliert und das als mikrobiell konserviertes Strukturmolekül (pattern-associated molecular pattern; PAMP) diskutiert wird, vermittelte dabei, zum Pulsen von dendritischen Zellen verwendet, einen schützenden TH1-abhängigen Effekt. Der Einsatz rekombinanter Proteine ist jedoch mit etlichen Nachteilen verbunden, weshalb andere Methoden zur Verabreichung von Antigenen entwickelt wurden. Aus der Tumorforschung ist unlängst die RNA-Elektroporation dendritischer Zellen als eine sichere und vielseitige Methode hervorgegangen, bei der eine große Anzahl von RNA-Molekülen, die für ein bestimmtes Antigen kodieren, durch einen elektrischen Impuls in das Cytosol dendritischer Zellen gelangt. Die vorliegende Arbeit beschreibt zum ersten Mal die Transfektion dendritischer Zellen mit RNA eines molekular definierten Parasitenantigens. Zunächst erfolgte die Etablierung eines standardisierten Protokolls für die RNA-Transfektion mit dem enhanced green fluorescent protein (EGFP) als Reporterantigen. EGFP-RNA war gut translatierbar in einem In-vitro-Translationssystem, und es konnten sowohl eine Zellinie (fetal skin-derived dendritic cells; FSDC) als auch primäre, aus Knochenmarkkulturen der Maus gewonnene dendritische Zellen (bone marrow-derived dendritic cells; BMDC) mit einem Anteil von bis zu 90% bzw. 75% effizient EGFP-transfiziert werden. In beiden Zelltypen wurde die maximale Transfektionseffizienz mit 20 µg RNA erreicht, die mit größeren Mengen an RNA nicht weiter zu steigern war. Die Höhe der Antigenexpression, gemessen als mittlere Fluoreszenzintensität (MFI) in der Durchflußzytometrie, war direkt proportional zur verwendeten RNA-Menge. In FSDC waren die Transfektionseffizienz und die MFI generell höher als in BMDC bei gleicher RNA-Menge. Zudem konnte gezeigt werden, daß eine Behandlung mit LPS die Kinetik beeinflußt: Die maximale Expression war höher und wurde auch eher erreicht, worauf zudem ein schnellerer Abfall folgte. In den Transfektionsexperimenten mit LeIF wurden zwei Varianten von LeIF-RNA verwendet: eine für die gesamte LeIF-Sequenz kodierende LeIF(fl)-RNA, und eine nur für die aminoterminale Hälfte der LeIF-Sequenz (226 Aminosäuren), dem immunogenen Teil des LeIF-Moleküls, kodierende LeIF(226)-RNA. Im Western Blot von Ganzzellysaten dendritischer Zellen war nur LeIF(fl) nach Transfektion nachzuweisen, wohingegen LeIF(226) in LeIF(226)-transfizierten BMDC nie nachzuweisen war. Da beide Konstrukte aber gut im zellfreien System translatierbar waren, stellte der fehlgeschlagene Nachweis von LeIF(226) kein Fehlschlagen der RNA-Translation, sondern vielmehr einen raschen Antigenabbau dar. Es bestand daher die Erwartung, daß LeIF(226)-transfizierte BMDC trotzdem in der Lage sein müßten, von LeIF(226) abgeleitete antigene Peptide an T-Zellen von mit rekombinantem LeIF (rLeIF) immunisierten BALB/c-Mäusen zu präsentieren. Diese Vermutung wurde durch Messung von IFN- in Stimulationsversuchen mit BMDC und T-Zellen bestätigt, die zeigten, daß am Tag 7 der Kultur mit rLeIF gepulste, LeIF(226)- und LeIF(fl)-transfizierte BMDC in der Tat antigenspezifisch T-Zellen aus LeIF-immunisierten Mäusen aktivierten. IL-4 hingegen wurde nicht produziert, was mit der Tatsache vereinbar ist, daß in Lymphknoten LeIF-vakzinierter Mäusen hauptsächlich T-Zellen vom TH1-Typ zu finden sind. In den Überständen LeIF-transfizierter BMDC-Kulturen, im Gegensatz zu rLeIF-gepulsten BMDC, waren die proinflammatorischen Zytokine IL-1β, IL-6, IL-10 und IL-12 nicht nachzuweisen. Dieser Effekt lag nicht am Elektroporationsvorgang, da die Zytokinproduktion von mit rekombinantem LeIF elektroporierten BMDC nur teilweise beeinträchtigt war. Die Expression von CD86 war nach LeIF-Transfektion zudem geringer als nach Pulsen mit rLeIF. LeIF-Transfektion führte mithin nicht zur Reifung dendritischer Zellen. LeIF-transfizierte BMDC könnten im Ergebnis als antigenspezifische Toleranzinduktoren fungiert haben, mit regulatorischen T-Zellen als Respondern. Der Effekt der Transfektion mit LeIF-RNA auf die immunstimulatorische Wirkung von BMDC war nicht signifikant erhöht, wenn BMDC am Tag 8 oder 9 der Kultur verwendet wurden. BMDC, die am Tag 8, und mehr noch am Tag 9 mit rLeIF gepulst wurden, induzierten hingegen eine energische T-Zell-Antwort. BMDC vom Tag 9 waren sogar in der Lage, naive T-Zellen zu aktivieren. Bevor eine starke, gegen LeIF gerichtete T-Zell-Antwort eingeleitet werden kann, müssen dendritische Zellen also letztlich – neben Präsentation des Antigens und Expression kostimulatorischer Moleküle – eine gewisse „Empfindlichkeit“ gegenüber dem Strukturmolekül LeIF besitzen, die mit ihrem Reifungsalter in Zusammenhang steht. Dieses dritte Signal wird nicht durch intrazelluläres LeIF nach Transfektion mit LeIF-RNA übermittelt, oder es wird unterdrückt. Darüber hinaus war nach Elektroporation von rLeIF die IL-12-Produktion von BMDC gänzlich aufgehoben, die Produktion von IL-1 bei höheren Antigendosen reduziert und die Produktion von IL-10 teilweise erhöht. Die Produktion von IL-6 war unbeeinflußt. Dieses veränderte Zytokinprofil legt eine Doppelnatur von LeIF als PAMP nahe: Neben der bei extrazellulärem Vorliegen von LeIF erwiesenen Eigenschaft, die Produktion von IL-12 zu stimulieren, welches die Resistenz des Wirtes gegen L. major steigert, könnte LeIF bei intrazellulärem Vorliegen auch zu Evasionsmechanismen des Parasiten vor dem Immunsystem des Wirtes beitragen, möglicherweise durch Wechselwirkung mit MAP (mitogen-activated protein)-Kinase-Signalwegen. Die Eigenschaften von LeIF als Adjuvans hängen also sowohl von der Verabreichungsmethode (Transfektion mit RNA bzw. Pulsen mit dem rekombinanten Protein) als auch vom Zielkompartiment (extra- bzw. intrazellulär) ab. Zusammenfassend konnte also in dieser Arbeit gezeigt werden, daß BMDC mit einem Parasitenantigen transfizierbar sind. Das Antigen wird dabei prozessiert und präsentiert, aber von dendritischen Zellen nicht als PAMP erkannt. Durch Transfektion mit antigenkodierender mRNA alleine werden mithin nicht alle notwendigen Signale für die Induktion einer potenten Immunantwort übermittelt. N2 - Cutaneous leishmaniasis is an infectious disease that is endemic especially in tropical and desert regions with an incidence of 1.5 million cases per year and a prevalence of 12 million people infected worldwide. The infection can be caused by the intracellular parasite Leishmania major. The disease has been studied extensively in the murine model. It has become apparent that the induction of a class of interferon (IFN)--producing CD4+ T helper cells (TH1 cells) that activate macrophages to kill the parasites they harbor is desicive for the establishment of immunity. The redirection of the host’s immune response towards a protective TH1 phenotype will also be the key to an effective vaccine. Dendritic cells (DC) loaded with leishmanial antigens ex vivo were lately described as vaccines against L. major infections. One single recombinant Leishmania antigen, LeIF (Leishmania homologue of eukaryotic ribosomal initiation factor 4a), which was identified as a protein that stimulates DC to secrete interleukin (IL)-12 and discussed as a pattern-associated molecular pattern (PAMP), was found to mediate a protective TH1-dependent effect when used for pulsing of DC. The application of recombinant proteins is tied to many disadvantages, which is why other methods of antigen administration have been developed. RNA electroporation of DC has recently emerged from tumor research as a safe and versatile method of antigen delivery, by which a large number of RNA molecules encoding a specific antigen gains access to the cytosol of DC by an electrical impulse. The present study describes, for the first time, transfection of DC with RNA encoding a molecularly defined parasite antigen. Initially, a standardized protocol for RNA transfection was established, using the enhanced green fluorescent protein (EGFP) as reporter antigen. EGFP-RNA was well translatable in an in vitro translation system, and both a DC cell line (fetal skin-derived DC; FSDC) and murine primary bone marrow-derived DC (BMDC) could be transfected efficiently, with a yield of up to 90% and 75%, respectively. In both cell types, maximal transfection efficiency was attained with 20 µg RNA and could not be further increased with larger amounts of RNA. The level of antigen expression, measured as the mean fluorescence intensity (MFI) by flow cytometry, was directly proportional to the amount of RNA used for transfection. In FSDC, transfection efficiency and MFI were generally higher than in BMDC when the same amounts of RNA were used. Furthermore, the kinetics was shown to be sensitive to treatment with lipopolysaccharide (LPS): the expression peak was higher and was reached sooner, followed by a more rapid decline. In transfection experiments with LeIF, two variants of LeIF-RNA were used: LeIF(fl)-RNA, encoding the complete LeIF sequence, and LeIF(226)-RNA, encoding only the aminoterminal half of the LeIF sequence (226 amino acids), the immunogenic part of LeIF. Only LeIF(fl) was detectable by Western Blot in whole cell lysates of BMDC after LeIF(fl)-RNA transfection, whereas LeIF(226) could never be detected in LeIF(226)-transfected BMDC. However, as both constructs were well translatable in a cell-free system, the failure to detect LeIF(226) in BMDC lysates did not represent a failure in RNA translation, but rather a rapid antigen degradation. It was therefore expected that LeIF(226)-transfected BMDC should nevertheless be able to present LeIF(226)-derived antigenic peptides to T cells from BALB/c mice primed with recombinant LeIF (rLeIF). This hypothesis was confirmed by measuring IFN- production in BMDC-T cell co-incubation assays, showing that rLeIF-pulsed, LeIF(226)- and LeIF(fl)-transfected day 7 BMDC did indeed activate T cells from LeIF-immunized mice in an antigen-specific manner. In contrast, IL-4 was not produced, which was consistent with the fact that T cells found in lymph nodes from LeIF-primed mice are primarily of the TH1 type. In the supernatants of LeIF-transfected BMDC cultures, in contrast to rLeIF-pulsed BMDC, the proinflammatory cytokines IL-1β, IL-6, IL-10 and IL-12 were not detected. This effect was not due to the electroporation procedure, as cytokine production by BMDC electroporated with rLeIF was only partially impaired. Also, the expression levels of CD86 were lower upon LeIF transfection than after pulsing with rLeIF. Thus, LeIF transfection did not induce maturation of DC. In conclusion, LeIF-transfected BMDC may have acted as semi-mature antigen-specific tolerance inducers, with regulatory T cells as responders. The effect of LeIF transfection on the immunostimulatory capacity of BMDC was not significantly increased when day 8 or 9 BMDC were used. However, day 8, and even more day 9 BMDC pulsed with rLeIF mounted a vigorous T cell response. Day 9 BMDC were able to activate naïve T cells. In conclusion, before a strong T cell response against LeIF can be induced, DC need to – besides presenting antigen and expressing co-stimulatory molecules – exhibit a susceptibility to the innate signaling molecule LeIF which is linked to their maturation age. This third signal is provided by extracellular rLeIF, but it is not conveyed – or is suppressed – by intracellular LeIF after LeIF-RNA transfection. Furthermore, electroporation of rLeIF abrogated IL-12 production by BMDC completely, the production of IL-1 was reduced with higher antigen doses, and the production of IL-10 was partially increased. The IL-6 production was unaffected. This altered cytokine profile suggests that LeIF as a PAMP might have a bipartite nature: besides exhibiting the capacity to stimulate IL-12 production upon extracellular presence, thereby enhancing host resistance against L. major, LeIF could also contribute to parasitic host evasion mechanisms from intracellular compartments of DC, possibly by interfering with mitogen-activated protein (MAP) kinase signaling pathways. Thus, the adjuvant properties of LeIF depend both on its mode of delivery (transfection with RNA vs. pulsing with the recombinant protein) and the targeted compartment (extra- vs. intracellular). From this work, it can be summarized that BMDC are well transfectable with a parasite antigen. The antigen is processed and presented, but it is not recognized as a PAMP by DC. Hence, transfection with antigen-encoding mRNA by itself does not convey all necessary signals for the elicitation of a potent immune response. KW - Elektroporation KW - Leishmania KW - Leishmania major KW - Immunbiologie KW - Immunologie KW - Dendritische Zelle KW - Transfektion KW - Impfung KW - Antigenpräsentation KW - EGFP KW - pathogen-associated molecular pattern KW - TH1/TH2 KW - Transfektion KW - EGFP KW - pathogen-associated molecular pattern KW - TH1/TH2 KW - transfection Y1 - 2007 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-26208 ER - TY - JOUR A1 - Hof, H. A1 - Emmerling, P. A1 - Hacker, Jörg A1 - Hughes, C. T1 - The role of macrophages in primary and secondary infection of mice with Salmonella typhimurium N2 - Elimination of macrophages with high-molecular dextran sulphate (OS) markedly impairs resistance of mice to primary infection with smooth, virulent strains of Salmonella typhimurium, whereas stimulation of this system by killed Bordetella pertussis organisms increases resistance. In infection with rough, avirulent strains of S. iyphimurium the elimination of macro phages was not followed by an essential loss of resistance, and it appears that other non-specific defence mechanisms, for example the complement system, may have compensated for the lack of macrophages. Macrophages, therefore, play an important role in defence during primary infection with virulent strains. In immunity to challenge infection with S. typhimurium, macrophages play an even more significant role. Treatment with OS completely removes immunity, and both humoral and cell-mediated immune mechanisms seem to require the participation of macrophages. KW - Macrophage KW - Salmonella typhimurium KW - Dextran sulphate KW - Mouse KW - 0 antigen KW - Bordeiella pertussis Y1 - 1982 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-40248 ER - TY - THES A1 - Masota, Nelson Enos T1 - The Search for Novel Effective Agents Against Multidrug-Resistant Enterobacteriaceae T1 - Die Suche nach neuen wirksamen Wirkstoffen gegen multiresistente Enterobacteriaceae N2 - This thesis aimed at searching for new effective agents against Multidrug-Resistant Enterobacteriaceae. This is necessitated by the urgent need for new and innovative antibacterial agents addressing the critical priority pathogens prescribed by the World Health Organization (WHO). Among the available means for antibiotics discovery and development, nature has long remained a proven, innovative, and highly reliable gateway to successful antibacterial agents. Nevertheless, numerous challenges surrounding this valuable source of antibiotics among other drugs are limiting the complete realization of its potential. These include the availability of good quality data on the highly potential natural sources, limitations in methods to prepare and screen crude extracts, bottlenecks in reproducing biological potentials observed in natural sources, as well as hurdles in isolation, purification, and characterization of natural compounds with diverse structural complexities. Through an extensive review of the literature, it was possible to prepare libraries of plant species and phytochemicals with reported high potentials against Escherichia coli and Klebsiella pneumnoniae. The libraries were profiled to highlight the existing patterns and relationships between the reported antibacterial activities and studied plants’ families and parts, the type of the extracting solvent, as well as phytochemicals’ classes, drug-likeness and selected parameters for enhanced accumulation within the Gram-negative bacteria. In addition, motivations, objectives, the role of traditional practices and other crucial experimental aspects in the screening of plant extracts for antibacterial activities were identified and discussed. Based on the implemented strict inclusion criteria, the created libraries grant speedy access to well-evaluated plant species and phytochemicals with potential antibacterial activities. This way, further studies in yet unexplored directions can be pursued from the indicated or related species and compounds. Moreover, the availability of compound libraries focusing on related bacterial species serves a great role in the ongoing efforts to develop the rules of antibiotics penetrability and accumulation, particularly among Gram-negative bacteria. Here, in addition to hunting for potential scaffolds from such libraries, detailed evaluations of large pool compounds with related antibacterial potential can grant a better understanding of structural features crucial for their penetration and accumulation. Based on the scarcity of compounds with broad structural diversity and activity against Gram-negative bacteria, the creation and updating of such libraries remain a laborious but important undertaking. A Pressurized Microwave Assisted Extraction (PMAE) method over a short duration and low-temperature conditions was developed and compared to the conventional cold maceration over a prolonged duration. This method aimed at addressing the key challenges associated with conventional extraction methods which require long extraction durations, and use more energy and solvents, in addition to larger quantities of plant materials. Furthermore, the method was intended to replace the common use of high temperatures in most of the current MAE applications. Interestingly, the yields of 16 of 18 plant samples under PMAE over 30 minutes were found to be within 91–139% of those obtained from the 24h extraction by maceration. Additionally, different levels of selectivity were observed upon an analytical comparison of the extracts obtained from the two methods. Although each method indicated selective extraction of higher quantities or additional types of certain phytochemicals, a slightly larger number of additional compounds were observed under maceration. The use of this method allows efficient extraction of a large number of samples while sparing heat-sensitive compounds and minimizing chances for cross-reactions between phytochemicals. Moreover, findings from another investigation highlighted the low likelihood of reproducing antibacterial activities previously reported among various plant species, identified the key drivers of poor reproducibility, and proposed possible measures to mitigate the challenge. The majority of extracts showed no activities up to the highest tested concentration of 1024 µg/mL. In the case of identical plant species, some activities were observed only in 15% of the extracts, in which the Minimum Inhibitory Concentrations (MICs) were 4 – 16-fold higher than those in previous reports. Evaluation of related plant species indicated better outcomes, whereby about 18% of the extracts showed activities in a range of 128–512 μg/mL, some of the activities being superior to those previously reported in related species. Furthermore, solubilizing plant crude extracts during the preparation of test solutions for Antibacterial Susceptibility Testing (AST) assays was outlined as a key challenge. In trying to address this challenge, some studies have used bacteria-toxic solvents or generally unacceptable concentrations of common solubilizing agents. Both approaches are liable to give false positive results. In line with this challenge, this study has underscored the suitability of acetone in the solubilization of crude plant extracts. Using acetone, better solubility profiles of crude plant extracts were observed compared to dimethyl sulfoxide (DMSO) at up to 10 %v/v. Based on lacking toxicity against many bacteria species at up to 25 %v/v, its use in the solubilization of poorly water-soluble extracts, particularly those from less polar solvents is advocated. In a subsequent study, four galloylglucoses were isolated from the leaves of Paeonia officinalis L., whereby the isolation of three of them from this source was reported for the first time. The isolation and characterization of these compounds were driven by the crucial need to continually fill the pre-clinical antibiotics pipeline using all available means. Application of the bioautography-guided isolation and a matrix of extractive, chromatographic, spectroscopic, and spectrometric techniques enabled the isolation of the compounds at high purity levels and the ascertainment of their chemical structures. Further, the compounds exhibited the Minimum Inhibitory Concentrations (MIC) in a range of 2–256 µg/mL against Multidrug-Resistant (MDR) strains of E. coli and K. pneumonia exhibiting diverse MDR phenotypes. In that, the antibacterial activities of three of the isolated compounds were reported for the first time. The observed in vitro activities of the compounds resonated with their in vivo potentials as determined using the Galleria mellonella larvae model. Additionally, the susceptibility of the MDR bacteria to the galloylglucoses was noted to vary depending on the nature of the resistance enzymes expressed by the MDR bacteria. In that, the bacteria expressing enzymes with higher content of aromatic amino acids and zero or positive net charges were generally more susceptible. Following these findings, a plausible hypothesis for the observed patterns was put forward. The generally challenging pharmacokinetic properties of galloylglucoses limit their further development into therapeutic agents. However, the compounds can replace or reduce the use of antibiotics in livestock keeping as well as in the treatment of septic wounds and topical or oral cavity infections, among other potential uses. Using nature-inspired approaches, a series of glucovanillin derivatives were prepared following feasible synthetic pathways which in most cases ensured good yields and high purity levels. Some of the prepared compounds showed MIC values in a range of 128 – 512 μg/mL against susceptible and MDR strains of Klebsiella pneumoniae, Methicillin-Resistant Staphylococcus aureus (MRSA) and Vancomycin-Resistant Enterococcus faecium (VRE). These findings emphasize the previously reported essence of small molecular size, the presence of protonatable amino groups and halogen atoms, as well as an amphiphilic character, as crucial features for potential antibacterial agents. Due to the experienced limited success in the search for new antibacterial agents using purely synthetic means, pursuing semi-synthetic approaches as employed in this study are highly encouraged. This way, it is possible to explore broader chemical spaces around natural scaffolds while addressing their inherent limitations such as solubility, toxicity, and poor pharmacokinetic profiles. N2 - Ziel dieser Arbeit war die Suche nach neuen wirksamen Antiinfektiva gegen multiresistente Enterobacteriaceae. Grund dafür ist der dringende Bedarf an neuen und innovativen antibakteriellen Wirkstoffen gegen die von der Weltgesundheitsorganisation (WHO) als vorrangig eingestuften Krankheitserreger. Unter den verfügbaren Methoden zur Entdeckung und Entwicklung von Antibiotika ist die Natur seit langem ein bewährtes, innovatives und äußerst zuverlässiges Mittel, um erfolgreich zu antibakteriellen Wirkstoffen zu gelangen. Dennoch stehen dieser wertvollen Quelle von Antibiotika und anderen Arzneimitteln zahlreiche Herausforderungen gegenüber, die die vollständige Ausschöpfung ihres Potenzials einschränken. Dazu gehören die Verfügbarkeit qualitativ hochwertiger Daten über die hochpotenten natürlichen Quellen, Einschränkungen bei den Methoden zur Herstellung und zum Screening von Rohextrakten, Engpässe bei der Reproduktion des in natürlichen Quellen beobachteten biologischen Potenzials sowie Hürden bei der Isolierung, Reinigung und Charakterisierung von Naturstoffen mit unterschiedlicher struktureller Komplexität. Mittels einer umfassenden Durchsicht der Literatur war es möglich, Bibliotheken mit Pflanzenarten und Phytochemikalien zu erstellen, die ein hohes Potenzial gegen Escherichia coli und Klebsiella pneumnonia aufweisen. Die Bibliotheken wurden profiliert, um die bestehenden Muster und Beziehungen zwischen den berichteten antibakteriellen Aktivitäten und den untersuchten Pflanzenfamilien und -teilen, der Art des Extraktionslösungsmittels sowie den Klassen der Phytochemikalien, der Wirkstoffähnlichkeit und ausgewählten Parametern für eine verstärkte Akkumulation in den gramnegativen Bakterien aufzuzeigen. Darüber hinaus wurden Motivationen, Ziele, die Rolle traditioneller Methoden und andere wichtige experimentelle Aspekte beim Screening von Pflanzenextrakten auf antibakterielle Aktivitäten identifiziert und diskutiert. Auf der Grundlage der strengen Aufnahmekriterien bieten die erstellten Bibliotheken einen schnellen Zugang zu gut bewerteten Pflanzenarten und Phytochemikalien mit potenziellen antibakteriellen Aktivitäten. Auf diese Weise können weitere Studien in noch unerforschten Richtungen mit den angegebenen oder ähnlichen Arten und Verbindungen durchgeführt werden. Darüber hinaus spielt die Verfügbarkeit von Substanzbibliotheken, die sich auf verwandte Bakterienarten konzentrieren, eine große Rolle bei den laufenden Bemühungen, die Regeln für die Penetration und Akkumulation von Antibiotika zu entwickeln, insbesondere bei gramnegativen Bakterien. Neben der Suche nach potenziellen Molekülgerüsten aus solchen Bibliotheken können detaillierte Bewertungen großer Pools von Verbindungen mit antibakteriellem Potenzial ein besseres Verständnis der strukturellen Merkmale ermöglichen, die für ihre Penetration und Akkumulation entscheidend sind. Da es kaum Verbindungen mit breiter struktureller Vielfalt und Aktivität gegen gramnegative Bakterien gibt, ist die Erstellung und Aktualisierung solcher Bibliotheken nach wie vor ein mühsames, aber wichtiges Unterfangen. Es wurde eine schnelle mikrowellenunterstützte Extraktionsmethode unter Druck (PMAE) und bei niedrigen Temperaturen entwickelt und mit der herkömmlichen Kaltmazeration mit längerer andauernd verglichen. Mit der PMAE-Methode sollten die wichtigsten Probleme herkömmlicher Extraktionsmethoden gelöst werden, die eine lange Extraktionsdauer erfordern, mehr Energie und Lösungsmittel verbrauchen und zudem größere Mengen an Pflanzenmaterial benötigen. Darüber hinaus sollte die Methode die übliche Verwendung hoher Temperaturen in den meisten der derzeitigen MAE-Anwendungen ersetzen. Interessanterweise lag die Ausbeute von 16 der 18 Pflanzenproben bei der 30-minütigen PMAE zwischen 91 und 139 % der jenigen, die bei der 24-stündigen Extraktion durch Mazeration erzielt wurde. Darüber hinaus wurden bei einem analytischen Vergleich der mit den beiden Methoden gewonnenen Extrakte unterschiedliche Selektivitätsgrade festgestellt. Obwohl jede Methode eine selektive Extraktion größere Mengen oder zusätzlicher Arten bestimmter Phytochemikalien anzeigte, wurde bei der Mazeration eine etwas größere Anzahl an Verbindungen beobachtet. Die Anwendung dieser PMAE-Methode ermöglicht eine effiziente Extraktion einer großen Anzahl von Proben, wobei hitzeempfindliche Verbindungen geschont werden und die Wahrscheinlichkeit von Kreuzreaktionen zwischen Phytochemikalien minimiert wird. Die weitere Untersuchung von Pflanzenextraktionen haben die geringe Reproduzierbarkeit von antibakteriellen Aktivitäten, die zuvor für verschiedene Pflanzenarten berichtet wurden, aufgedeckt, die Hauptursachen für die schlechte Reproduzierbarkeit identifiziert und mögliche Maßnahmen zur Minimierung dieser Herausforderung vorgeschlagen. Die Mehrheit der Extrakte zeigte bis zur höchsten getesteten Konzentration von 1024 µg/ml keine Aktivitäten. Bei identischen Pflanzenarten wurden nur bei 15 % der Extrakte gewisse Aktivitäten beobachtet, wobei die minimalen Hemmkonzentrationen (MHK) um das Vier- bis 16-fache höher waren als in früheren Berichten. Die Auswertung verwandter Pflanzenarten zeigte geringfügig bessere Ergebnisse, wobei etwa lagen 18 % der Extrakte Aktivitäten in einem Bereich von 128-512 µg/ml aufwiesen; dabei einige der Aktivitäten über denen, die zuvor bei verwandten Arten berichtet wurden. Darüber hinaus wurde die Löslichkeit von Pflanzenrohextrakten bei der Herstellung von Testlösungen für die Bestimmung der Antimikrobischen Suszeptibilität (AST) als eine der größten Herausforderungen bezeichnet. Bei dem Versuch, diese Herausforderung zu bewältigen, wurden in einigen Studien bakterientoxische Lösungsmittel oder allgemein inakzeptable Konzentrationen gängiger Lösungsvermittler verwendet. Beide Ansätze können zu falsch-positiven Ergebnissen führen. Deshalb hat diese Studie die Eignung von Aceton für die Solubilisierung von Pflanzenrohextrakten unterstrichen. Bei Verwendung von Aceton wurden eine bessere Löslichkeit der Pflanzenrohextrakten im Vergleich zu Dimethylsulfoxid (DMSO) bei bis zu 10 % v/v beobachtet. Aufgrund der fehlenden Toxizität gegen viele Bakterienarten bei bis zu 25 % v/v wird die Verwendung von Aceton für die Solubilisierung schwer wasserlöslicher Extrakte, insbesondere solcher aus weniger polaren Lösungsmitteln, befürwortet. In der nachfolgenden Untersuchung wurden vier Galloylglucosen aus den Blättern von Paeonia officinalis L. isoliert, wobei von drei Substanzen aus dieser Quelle zum ersten Mal berichtet wurde. Die Isolierung und Charakterisierung dieser Verbindungen wurden durch die dringende Notwendigkeit vorangetrieben, die präklinische Antibiotika-Pipeline mit allen verfügbaren Methoden zu füllen. Die Anwendung der bioautographisch gesteuerten Isolierung und einer Matrix aus extraktiven, chromatographischen, spektroskopischen und spektrometrischen Techniken ermöglichte die Isolierung der Verbindungen mit hohem Reinheitsgrad und die Bestimmung ihrer chemischen Strukturen. Darüber hinaus wiesen die Verbindungen minimale Hemmkonzentrationen (MHK) in einem Bereich von 2-256 µg/ml gegen multiresistente (MDR) Stämme von E. coli und K. pneumonia auf, die verschiedene MDR-Phänotypen aufweisen. Über die antibakteriellen Aktivitäten von drei der isolierten Verbindungen wurde zum ersten Mal berichtet. Die beobachteten In-vitro-Aktivitäten der Verbindungen stimmten mit ihren In-vivo-Potenzialen überein, die anhand des Galleria mellonella-Larvenmodells ermittelt wurden. Darüber hinaus wurde festgestellt, dass die Empfindlichkeit der MDR-Bakterien gegenüber den Galloylglucosen von der Art der von den MDR-Bakterien exprimierten Resistenzenzyme abhängt. So waren die Bakterien, die Enzyme mit einem höheren Gehalt an aromatischen Aminosäuren und null oder positiven Nettoladungen exprimieren, im Allgemeinen anfälliger. Nach diesen Erkenntnissen wurde eine plausible Hypothese für die beobachteten Muster aufgestellt. Die allgemein schwierigen pharmakokinetischen Eigenschaften von Galloylglucosen schränken ihre weitere Entwicklung als therapeutischen Wirkstoffen ein. Die Verbindungen können jedoch den Einsatz von Antibiotika in der Tierhaltung sowie bei der Behandlung von septischen Wunden und Infektionen der Haut oder der Mundhöhle ersetzen oder reduzieren, neben anderen potenziellen Anwendungen. Mit von der Natur inspirierten Ansätzen wurde eine Reihe von Glucovanillin-Derivaten synthetisch hergestellt. Einige der neuen Verbindungen wiesen MHK-Werte im Bereich von 128 - 512 μg/ml gegen empfindliche und MDR-Stämme von Klebsiella pneumoniae, Methicillin-resistentem Staphylococcus aureus (MRSA) und Vancomycin-resistentem Enterococcus faecium (VRE) auf. Diese Ergebnisse unterstreichen die bereits früher berichtete Bedeutung einer kleinen Molekülgröße, des Vorhandenseins protonierbarer Aminogruppen und Halogenatome sowie eines amphiphilen Charakters als entscheidende Merkmale für potenzielle antibakterielle Wirkstoffe. Da die Suche nach neuen antibakteriellen Wirkstoffen mit rein synthetischen Mitteln bisher nur begrenzt erfolgreich war, sind halbsynthetische Ansätze, wie sie in dieser Studie verwendet wurden, sehr zu empfehlen. Auf diese Weise ist es möglich, größere chemische Räume um natürliche Molekülgerüste herum zu erforschen und gleichzeitig deren inhärente Einschränkungen wie Löslichkeit, Toxizität und schlechte pharmakokinetische Profile zu überwinden. KW - Enterobacteriaceae KW - Pflanzen KW - Synthese KW - Multidrugresistant KW - Plant extracts KW - Isolation and Characterization KW - Microwave Assisted Extraction KW - Nature-Insipired Synthesis KW - Reproducibility challenges KW - Library of Phytochemicals KW - Library of plant species KW - Plants KW - Characterization KW - Synthesis Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-302632 ER - TY - JOUR A1 - Bandyra, Katarzyna J. A1 - Said, Nelly A1 - Pfeiffer, Verena A1 - Górna, Maria W. A1 - Vogel, Jörg A1 - Luisi, Ben F. T1 - The Seed Region of a Small RNA Drives the Controlled Destruction of the Target mRNA by the Endoribonuclease RNase E JF - Molecular Cell N2 - Numerous small non-coding RNAs (sRNAs) in bacteria modulate rates of translation initiation and degradation of target mRNAs, which they recognize through base-pairing facilitated by the RNA chaperone Hfq. Recent evidence indicates that the ternary complex of Hfq, sRNA and mRNA guides endoribonuclease RNase E to initiate turnover of both the RNAs. We show that a sRNA not only guides RNase E to a defined site in a target RNA, but also allosterically activates the enzyme by presenting a monophosphate group at the 5′-end of the cognate-pairing “seed.” Moreover, in the absence of the target the 5′-monophosphate makes the sRNA seed region vulnerable to an attack by RNase E against which Hfq confers no protection. These results suggest that the chemical signature and pairing status of the sRNA seed region may help to both ‘proofread’ recognition and activate mRNA cleavage, as part of a dynamic process involving cooperation of RNA, Hfq and RNase E. KW - medicine Y1 - 2012 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-126202 VL - 47 IS - 6 ER - TY - JOUR A1 - Jarick, Marcel A1 - Bertsche, Ute A1 - Stahl, Mark A1 - Schultz, Daniel A1 - Methling, Karen A1 - Lalk, Michael A1 - Stigloher, Christian A1 - Steger, Mirco A1 - Schlosser, Andreas A1 - Ohlsen, Knut T1 - The serine/threonine kinase Stk and the phosphatase Stp regulate cell wall synthesis in Staphylococcus aureus JF - Scientific Reports N2 - The cell wall synthesis pathway producing peptidoglycan is a highly coordinated and tightly regulated process. Although the major components of bacterial cell walls have been known for decades, the complex regulatory network controlling peptidoglycan synthesis and many details of the cell division machinery are not well understood. The eukaryotic-like serine/threonine kinase Stk and the cognate phosphatase Stp play an important role in cell wall biosynthesis and drug resistance in S. aureus. We show that stp deletion has a pronounced impact on cell wall synthesis. Deletion of stp leads to a thicker cell wall and decreases susceptibility to lysostaphin. Stationary phase Δstp cells accumulate peptidoglycan precursors and incorporate higher amounts of incomplete muropeptides with non-glycine, monoglycine and monoalanine interpeptide bridges into the cell wall. In line with this cell wall phenotype, we demonstrate that the lipid II:glycine glycyltransferase FemX can be phosphorylated by the Ser/Thr kinase Stk in vitro. Mass spectrometric analyses identify Thr32, Thr36 and Ser415 as phosphoacceptors. The cognate phosphatase Stp dephosphorylates these phosphorylation sites. Moreover, Stk interacts with FemA and FemB, but is unable to phosphorylate them. Our data indicate that Stk and Stp modulate cell wall synthesis and cell division at several levels. KW - bacterial transcription KW - pathogens KW - cell wall synthesis Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-177333 VL - 8 IS - 13693 ER - TY - JOUR A1 - Fröhlich, Kathrin S. A1 - Haneke, Katharina A1 - Papenfort, Kai A1 - Vogel, Jörg T1 - The target spectrum of SdsR small RNA in Salmonella JF - Nucleic Acids Research N2 - Model enteric bacteria such as Escherichia coli and Salmonella enterica express hundreds of small non-coding RNAs (sRNAs), targets for most of which are yet unknown. Some sRNAs are remarkably well conserved, indicating that they serve cellular functions that go beyond the necessities of a single species. One of these ‘core sRNAs’ of largely unknown function is the abundant ∼100-nucleotide SdsR sRNA which is transcribed by the general stress σ-factor, σ\(^{S}\) and accumulates in stationary phase. In Salmonella, SdsR was known to inhibit the synthesis of the species-specific porin, OmpD. However, sdsR genes are present in almost all enterobacterial genomes, suggesting that additional, conserved targets of this sRNA must exist. Here, we have combined SdsR pulse-expression with whole genome transcriptomics to discover 20 previously unknown candidate targets of SdsR which include mRNAs coding for physiologically important regulators such as the carbon utilization regulator, CRP, the nucleoid-associated chaperone, StpA and the antibiotic resistance transporter, TolC. Processing of SdsR by RNase E results in two cellular SdsR variants with distinct target spectra. While the overall physiological role of this orphan core sRNA remains to be fully understood, the new SdsR targets present valuable leads to determine sRNA functions in resting bacteria. KW - sRNA KW - Salmonella enterica KW - SdsR Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-175365 VL - 44 IS - 21 ER - TY - JOUR A1 - Barquist, Lars A1 - Mayho, Matthew A1 - Cummins, Carla A1 - Cain, Amy K. A1 - Boinett, Christine J. A1 - Page, Andrew J. A1 - Langridge, Gemma C. A1 - Quail, Michael A. A1 - Keane, Jacqueline A. A1 - Parkhill, Julian T1 - The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries JF - Bioinformatics N2 - Transposon insertion sequencing is a high-throughput technique for assaying large libraries of otherwise isogenic transposon mutants providing insight into gene essentiality, gene function and genetic interactions. We previously developed the Transposon Directed Insertion Sequencing (TraDIS) protocol for this purpose, which utilizes shearing of genomic DNA followed by specific PCR amplification of transposon-containing fragments and Illumina sequencing. Here we describe an optimized high-yield library preparation and sequencing protocol for TraDIS experiments and a novel software pipeline for analysis of the resulting data. The Bio-Tradis analysis pipeline is implemented as an extensible Perl library which can either be used as is, or as a basis for the development of more advanced analysis tools. This article can serve as a general reference for the application of the TraDIS methodology. KW - mechanisms KW - Transposon insertion sequencing KW - sequencing protocol KW - TraDIS Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-189667 VL - 32 IS - 7 ER - TY - JOUR A1 - Sasse, Christoph A1 - Schillig, Rebecca A1 - Dierolf, Franziska A1 - Weyler, Michael A1 - Schneider, Sabrina A1 - Mogavero, Selene A1 - Rogers, David P. A1 - Morschhäuser, Joachim T1 - The Transcription Factor Ndt80 Does Not Contribute to Mrr1-, Tac1-, and Upc2-Mediated Fluconazole Resistance in Candida albicans N2 - The pathogenic yeast Candida albicans can develop resistance to the widely used antifungal agent fluconazole, which inhibits ergosterol biosynthesis, by the overexpression of genes encoding multidrug efflux pumps or ergosterol biosynthesis enzymes. Zinc cluster transcription factors play a central role in the transcriptional regulation of drug resistance. Mrr1 regulates the expression of the major facilitator MDR1, Tac1 controls the expression of the ABC transporters CDR1 and CDR2, and Upc2 regulates ergosterol biosynthesis (ERG) genes. Gain-of-function mutations in these transcription factors result in constitutive overexpression of their target genes and are responsible for fluconazole resistance in many clinical C. albicans isolates. The transcription factor Ndt80 contributes to the drug-induced upregulation of CDR1 and ERG genes and also binds to the MDR1 and CDR2 promoters, suggesting that it is an important component of all major transcriptional mechanisms of fluconazole resistance. However, we found that Ndt80 is not required for the induction of MDR1 and CDR2 expression by inducing chemicals. CDR2 was even partially derepressed in ndt80D mutants, indicating that Ndt80 is a repressor of CDR2 expression. Hyperactive forms of Mrr1, Tac1, and Upc2 promoted overexpression of MDR1, CDR1/CDR2, and ERG11, respectively, with the same efficiency in the presence and absence of Ndt80. Mrr1- and Tac1-mediated fluconazole resistance was even slightly enhanced in ndt80D mutants compared to wild-type cells. These results demonstrate that Ndt80 is dispensable for the constitutive overexpression of Mrr1, Tac1, and Upc2 target genes and the increased fluconazole resistance of strains that have acquired activating mutations in these transcription factors. KW - Candida albicans Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-69201 ER - TY - JOUR A1 - Rodriguez, Héctor A1 - Rico, Sergio A1 - Yepes, Ana A1 - Franco-Echevarría, Elsa A1 - Antoraz, Sergio A1 - Santamaría, Ramón I. A1 - Díaz, Margerita T1 - The two kinases, AbrC1 and AbrC2, of the atypical two-component system AbrC are needed to regulate antibiotic production and differentiation in Streptomyces coelicolor JF - Frontiers in Microbiology N2 - Two-component systems (TCSs) are the most important sensing mechanisms in bacteria. In Streptomyces, TCSs-mediated responses to environmental stimuli are involved in the regulation of antibiotic production. This study examines the individual role of two histidine kinases (HKs), AbrC1 and AbrC2, which form part of an atypical TCS in Streptomyces coelicolor. gRT-PCR analysis of the expression of both kinases demonstrated that both are expressed at similar levels in NB and NMMP media. Single deletion of abrC1 elicited a significant increase in antibiotic production, while deletion of abrC2 did not have any clear effect. The origin of this phenotype, probably related to the differential phosphorylation ability of the two kinases, was also explored indirectly, analyzing the toxic phenotypes associated with high levels of phosphorylated RR. The higher the AbrC3 regulator phosphorylation rate, the greater the cell toxicity. For the first time, the present work shows in Streptomyces the combined involvement of two different HKs in the response of a regulator to environmental signals. Regarding the possible applications of this research, the fact that an abrC1 deletion mutant overproduces three of the S. coelicolor antibiotics makes this strain an excellent candidate as a host for the heterologous production of secondary metabolites. KW - halstedii JM8 KW - biosynthesis KW - expression mutants KW - domain genes A3(2) KW - two-component systems KW - Streptomyces KW - antibiotic production KW - histidine kinases KW - heterologous production KW - activation KW - response regulator KW - PCR Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-143048 VL - 6 IS - 450 ER - TY - JOUR A1 - Nguyen, Minh Thu A1 - Kraft, Beatrice A1 - Yu, Wenqi A1 - Demicrioglu, Dogan Doruk A1 - Hertlein, Tobias A1 - Burian, Marc A1 - Schmaler, Mathias A1 - Boller, Klaus A1 - Bekeredjian-Ding, Isabelle A1 - Ohlsen, Knut A1 - Schittek, Birgit A1 - Götz, Friedrich T1 - The vSa\(\alpha\) Specific Lipoprotein Like Cluster (lpl) of S. aureus USA300 Contributes to Immune Stimulation and Invasion in Human Cells JF - PLoS Pathogens N2 - All Staphylococcus aureus genomes contain a genomic island, which is termed vSa\(\alpha\) and characterized by two clusters of tandem repeat sequences, i.e. the exotoxin (set) and 'lipoprotein-like' genes (lpl). Based on their structural similarities the vSa\(\alpha\) islands have been classified as type I to IV. The genomes of highly pathogenic and particularly epidemic S. aureus strains (USA300, N315, Mu50, NCTC8325, Newman, COL, JH1 or JH9) belonging to the clonal complexes CC5 and CC8 bear a type I vSa\(\alpha\) island. Since the contribution of the lpl gene cluster encoded in the vSa\(\alpha\) island to virulence is unclear to date, we deleted the entire lpl gene cluster in S. aureus USA300. The results showed that the mutant was deficient in the stimulation of pro-inflammatory cytokines in human monocytes, macrophages and keratinocytes. Purified lipoprotein Lpl1 was further shown to elicit a TLR2-dependent response. Furthermore, heterologous expression of the USA300 lpl cluster in other S. aureus strains enhanced their immune stimulatory activity. Most importantly, the lpl cluster contributed to invasion of S. aureus into human keratinocytes and mouse skin and the non-invasive S. carnosus expressing the lpl gene cluster became invasive. Additionally, in a murine kidney abscess model the bacterial burden in the kidneys was higher in wild type than in mutant mice. In this infection model the lpl cluster, thus, contributes to virulence. The present report is one of the first studies addressing the role of the vSa\(\alpha\) encoded lpl gene cluster in staphylococcal virulence. The finding that the lpl gene cluster contributes to internalization into non-professional antigen presenting cells such as keratinocytes high-lights the lpl as a new cell surface component that triggers host cell invasion by S. aureus. Increased invasion in murine skin and an increased bacterial burden in a murine kidney abscess model suggest that the lpl gene cluster serves as an important virulence factor. KW - resistant Staphylococcus-aureus KW - bacterial lipoproteins KW - internalization KW - evolution KW - fibronectin-binding protein KW - toll-like receptor 2 KW - epithelial cells KW - genome sequence KW - activation KW - mechanisms Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-151856 VL - 11 IS - 6 ER - TY - JOUR A1 - Böhm, Lena A1 - Torsin, Sanda A1 - Tint, Su Hlaing A1 - Eckstein, Marie Therese A1 - Ludwig, Tobias A1 - Pérez, J. Christian T1 - The yeast form of the fungus Candida albicans promotes persistence in the gut of gnotobiotic mice JF - PLoS Pathogens N2 - Many microorganisms that cause systemic, life-threatening infections in humans reside as harmless commensals in our digestive tract. Yet little is known about the biology of these microbes in the gut. Here, we visualize the interface between the human commensal and pathogenic fungus Candida albicans and the intestine of mice, a surrogate host. Because the indigenous mouse microbiota restricts C. albicans settlement, we compared the patterns of colonization in the gut of germ free and antibiotic-treated conventionally raised mice. In contrast to the heterogeneous morphologies found in the latter, we establish that in germ free animals the fungus almost uniformly adopts the yeast cell form, a proxy of its commensal state. By screening a collection of C. albicans transcription regulator deletion mutants in gnotobiotic mice, we identify several genes previously unknown to contribute to in vivo fitness. We investigate three of these regulators—ZCF8, ZFU2 and TRY4—and show that indeed they favor the yeast form over other morphologies. Consistent with this finding, we demonstrate that genetically inducing non-yeast cell morphologies is detrimental to the fitness of C. albicans in the gut. Furthermore, the identified regulators promote adherence of the fungus to a surface covered with mucin and to mucus-producing intestinal epithelial cells. In agreement with this result, histology sections indicate that C. albicans dwells in the murine gut in close proximity to the mucus layer. Thus, our findings reveal a set of regulators that endows C. albicans with the ability to endure in the intestine through multiple mechanisms. KW - Candida albicans KW - deletion mutagenesis KW - gastrointestinal tract KW - fungi KW - regulator genes KW - gene regulation KW - mouse models KW - fungal genetics Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-159120 VL - 13 IS - 10 ER - TY - JOUR A1 - Ramírez-Zavala, Bernardo A1 - Krüger, Ines A1 - Wollner, Andreas A1 - Schwanfelder, Sonja A1 - Morschhäuser, Joachim T1 - The Ypk1 protein kinase signaling pathway is rewired and not essential for viability in \(Candida\) \(albicans\) JF - PLoS Genetics N2 - Abstract Protein kinases are central components of almost all signaling pathways that control cellular activities. In the model organism Saccharomyces cerevisiae, the paralogous protein kinases Ypk1 and Ypk2, which control membrane lipid homeostasis, are essential for viability, and previous studies strongly indicated that this is also the case for their single ortholog Ypk1 in the pathogenic yeast Candida albicans. Here, using FLP-mediated inducible gene deletion, we reveal that C. albicans ypk1Δ mutants are viable but slow-growing, explaining prior failures to obtain null mutants. Phenotypic analyses of the mutants showed that the functions of Ypk1 in regulating sphingolipid biosynthesis and cell membrane lipid asymmetry are conserved, but the consequences of YPK1 deletion are milder than in S. cerevisiae. Mutational studies demonstrated that the highly conserved PDK1 phosphorylation site T548 in its activation loop is essential for Ypk1 function, whereas the TORC2 phosphorylation sites S687 and T705 at the C-terminus are important for Ypk1-dependent resistance to membrane stress. Unexpectedly, Pkh1, the single C. albicans orthologue of Pkh1/Pkh2, which mediate Ypk1 phosphorylation at the PDK1 site in S. cerevisiae, was not required for normal growth of C. albicans under nonstressed conditions, and Ypk1 phosphorylation at T548 was only slightly reduced in pkh1Δ mutants. We found that another protein kinase, Pkh3, whose ortholog in S. cerevisiae cannot substitute Pkh1/2, acts redundantly with Pkh1 to activate Ypk1 in C. albicans. No phenotypic effects were observed in cells lacking Pkh3 alone, but pkh1Δ pkh3Δ double mutants had a severe growth defect and Ypk1 phosphorylation at T548 was completely abolished. These results establish that Ypk1 is not essential for viability in C. albicans and that, despite its generally conserved function, the Ypk1 signaling pathway is rewired in this pathogenic yeast and includes a novel upstream kinase to activate Ypk1 by phosphorylation at the PDK1 site. Author summary Protein kinases are key components of cellular signaling pathways, and elucidating the specific roles of individual kinases is important to understand how organisms adapt to changes in their environment. The protein kinase Ypk1 is highly conserved in eukaryotic organisms and crucial for the maintenance of cell membrane homeostasis. It was previously thought that Ypk1 is essential for viability in the pathogenic yeast Candida albicans, as in the model organism Saccharomyces cerevisiae. Here, by using forced, inducible gene deletion, we reveal that C. albicans mutants lacking Ypk1 are viable but have a strong growth defect. The phenotypes of the mutants indicate that the known functions of Ypk1 are conserved in C. albicans, but loss of this kinase has less severe consequences than in S. cerevisiae. We also unravel the puzzling previous observation that C. albicans mutants lacking the Ypk1-activating kinase Pkh1, which is essential in S. cerevisiae, have no obvious growth defects. We show that the protein kinase Pkh3, which has not previously been implicated in the Ypk1 signaling pathway, can substitute Pkh1 and activate Ypk1 in C. albicans. These findings provide novel insights into this conserved signaling pathway and how it is rewired in a human-pathogenic fungus. KW - Ypk1 KW - protein kinase KW - signaling pathway KW - Candida albicans Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-350076 VL - 19 IS - 8 ER - TY - JOUR A1 - Mottola, Austin A1 - Ramírez-Zavala, Bernardo A1 - Hünninger, Kerstin A1 - Kurzai, Oliver A1 - Morschhäuser, Joachim T1 - The zinc cluster transcription factor Czf1 regulates cell wall architecture and integrity in Candida albicans JF - Molecular Microbiology N2 - The fungal cell wall is essential for the maintenance of cellular integrity and mediates interactions of the cells with the environment. It is a highly flexible organelle whose composition and organization is modulated in response to changing growth conditions. In the pathogenic yeast Candida albicans, a network of signaling pathways regulates the structure of the cell wall, and mutants with defects in these pathways are hypersensitive to cell wall stress. By harnessing a library of genetically activated forms of all C. albicans zinc cluster transcription factors, we found that a hyperactive Czf1 rescued the hypersensitivity to cell wall stress of different protein kinase deletion mutants. The hyperactive Czf1 induced the expression of many genes with cell wall-related functions and caused visible changes in the cell wall structure. C. albicans czf1Δ mutants were hypersensitive to the antifungal drug caspofungin, which inhibits cell wall biosynthesis. The changes in cell wall architecture caused by hyperactivity or absence of Czf1 resulted in an increased recognition of C. albicans by human neutrophils. Our results show that Czf1, which is known as a regulator of filamentous growth and white-opaque switching, controls the expression of cell wall genes and modulates the architecture of the cell wall. KW - cell wall KW - zinc cluster transcription factor KW - Candida albicans KW - protein kinases Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-259583 VL - 116 IS - 2 ER - TY - JOUR A1 - Hanzelmann, Dennis A1 - Joo, Hwang-Soo A1 - Franz-Wachtel, Mirita A1 - Hertlein, Tobias A1 - Stevanovic, Stefan A1 - Macek, Boris A1 - Wolz, Christiane A1 - Götz, Friedrich A1 - Otto, Michael A1 - Kretschmer, Dorothee A1 - Peschel, Andreas T1 - Toll-like receptor 2 activation depends on lipopeptide shedding by bacterial surfactants JF - Nature Communications N2 - Sepsis caused by Gram-positive bacterial pathogens is a major fatal disease but its molecular basis remains elusive. Toll-like receptor 2 (TLR2) has been implicated in the orchestration of inflammation and sepsis but its role appears to vary for different pathogen species and clones. Accordingly, Staphylococcus aureus clinical isolates differ substantially in their capacity to activate TLR2. Here we show that strong TLR2 stimulation depends on high-level production of phenol-soluble modulin (PSM) peptides in response to the global virulence activator Agr. PSMs are required for mobilizing lipoproteins, the TLR2 agonists, from the staphylococcal cytoplasmic membrane. Notably, the course of sepsis caused by PSM-deficient S. aureus is similar in wild-type and TLR2-deficient mice, but TLR2 is required for protection of mice against PSM-producing S. aureus. Thus, a crucial role of TLR2 depends on agonist release by bacterial surfactants. Modulation of this process may lead to new therapeutic strategies against Gram-positive infections. KW - Pathogens KW - Toll-like receptors Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-165975 VL - 7 ER - TY - CHAP A1 - Handman, E. A1 - Mitchell, G. F. A1 - McConville, M. J. A1 - Moll, Heidrun T1 - Towards a carbohydrate-based vaccine against leishmaniasis N2 - No abstract available Y1 - 1987 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-33827 ER - TY - THES A1 - Aminake, Makoah Nigel T1 - Towards malaria combination therapy: Characterization of hybrid molecules for HIV/malaria combination therapy and of thiostrepton as a proteasome-targeting antibiotic with a dual mode of action T1 - Die Entwicklung von Malaria-Kombinationstherapien: Die Charakterisierung von Hybridmolekülen für eine HIV/Malaria-Kombinationstherapie und von Thiostrepton als ein gegen das Proteasom-gerichtetes Antibiotikum mit dualem Wirkmodus N2 - Malaria and HIV are among the most important global health problems of our time and together are responsible for approximately 3 million deaths annually. These two diseases overlap in many regions of the world including sub-Saharan Africa, Southeast Asia and South America, leading to a higher risk of co-infection. In this study, we generated and characterized hybrid molecules to target P. falciparum and HIV simultaneously for a potential HIV/malaria combination therapy. Hybrid molecules were synthesized by covalent fusion between azidothymidine (AZT) and dihydroartemisinin (DHA), tetraoxane or chloroquine (CQ); and a small library was generated and tested for antiviral and antimalarial activity. Our data suggest that dihyate is the most potent molecule in vitro, with antiplasmodial activity comparable to that of DHA (IC50 = 26 nM, SI > 3000), a moderate activity against HIV (IC50 = 2.9 µM; SI > 35) and safe to HeLa cells at concentrations used in the assay (CC50 > 100 µM). Pharmacokinetic studies further revealed that dihyate is metabolically unstable and is cleaved following an O-dealkylation once in contact with cytochrome P450 enzymes. The later further explains the uneffectiveness of dihyate against the CQ-sensitive P. berghei N strain in mice when administered by oral route at 20 mg/kg. Here, we report on a first approach to develop antimalarial/anti-HIV hybrid molecules and future optimization efforts will aim at producing second generation hybrid molecules to improve activity against HIV as well as compound bioavailability. With the emergence of resistant parasites against all the counterpart drugs of artemisinin derivatives used in artemisinin based combination therapies (ACTs), the introduction of antibiotics in the treatment of malaria has renewed interest on the identification of antibiotics with potent antimalarial properties. In this study we also investigated the antiplasmodial potential of thiostrepton and derivatives, synthesized using combinations of tail truncation, oxidation, and addition of lipophilic thiols to the terminal dehydroamino acid. We showed that derivatives SS231 and SS234 exhibit a better antiplasmodial activity (IC50 = 1 µM SI > 59 and SI > 77 respectively) than thiostrepton (IC50 = 8.95 µM, SI = 1.7). The antiplasmodial activity of these derivatives was observed at concentrations which are not hemolytic and non-toxic to human cell lines. Thiostrepton and derivatives appeared to exhibit transmission blocking properties when administered at their IC50 or IC90 concentrations and our data also showed that they attenuate proteasome activity of Plasmodium, which resulted in an accumulation of ubiquitinated proteins after incubation with their IC80 concentrations. Our results indicate that the parasite’s proteasome could be an attractive target for therapeutic intervention. In this regard, thiostrepton derivatives are promising candidates by dually acting on two independent targets, the proteasome and the apicoplast, with the capacity to eliminate both intraerythrocytic asexual and transmission stages of the parasite. To further support our findings, we evaluated the activity of a new class of antimalarial and proteasome inhibitors namely peptidyl sulfonyl fluorides on gametocyte maturation and analogues AJ34 and AJ38 were able to completely suppress gametocytogenesis at IC50 concentrations (0.23 µM and 0.17 µM respectively) suggesting a strong transmission blocking potential. The proteasome, a major proteolytic complex, responsible for the degradation and re-cycling of non-functional proteins has been studied only indirectly in P. falciparum. In addition, an apparent proteasome-like protein with similarity to bacterial ClpQ/hslV threonine-peptidases was predicted in the parasite. Antibodies were generated against the proteasome subunits alpha type 5 (α5-SU), beta type 5 (β5-SU) and pfhslV in mice and we showed that the proteasome is expressed in both sexual and asexual blood stages of P. falciparum, where they localize in the nucleus and in the cytoplasm. However, expression of PfhslV was only observed in trophozoites and shizonts. The trafficking of the studied proteasome subunits was further investigated by generating parasites expressing GFP tagged proteins. The expression of α5-SU-GFP in transgenic parasite appeared to localize abundantly in the cytoplasm of all blood stages, and no additional information was obtained from this parasite line. In conclusion, our data highlight two new tools towards combination therapy. Hybrid molecules represent promising tools for the cure of co-infected individuals, while very potent antibiotics with a wide scope of activities could be useful in ACTs by eliminating resistant parasites and limiting transmission of both, resistances and disease. N2 - Malaria und HIV gehören zu den wichtigsten weltweiten Gesundheitsproblemen unserer Zeit und verursachen jährlich zusammen fast drei Millionen Todesfälle. Das Verbreitungsgebiet beider Krankheit überschneidet sich in vielen Weltregionen wie Afrika südlich der Sahara, Südostasien und Südamerika, was zu einem erhöhten Risiko für Koinfektionen führt. Während der vorliegenden Arbeit stellten wir Hybridmoleküle her und charakterisierten diese in Bezug auf ihre gleichzeitige Wirksamkeit gegen P. falciparum und HIV mit dem Ziel einer möglichen Kombinationstherapie gegen beide Krankheiten. Diese Hybridmoleküle wurden durch kovalente Verbindung von Azidothymidin (AZT) mit Dihydroartemisinin (DHA), Tetraoxan und Chloroquin (CQ) hergestellt. Die dabei hergestellte kleine Molekülsammlung wurde auf antivirale Wirkung und Wirkung gegen Malaria getestet. In vitro ist, gemäß unserer Daten, Dihyate das wirksamste Molekül, mit einer dem DHA vergleichbaren Wirksamkeit gegen Plasmodium (IC50 = 26 nM, SI > 3000), einer mittelmäßigen Wirksamkeit gegen HIV (IC50 = 2.9 µM; SI > 35) und keiner Wirkung auf HeLa-Zellen bei den im Versuch verwendeten Konzentrationen (CC50 > 100 µM). Weiterhin ergaben pharmakokinetische Studien, dass Dihyate metabolisch instabil ist und nach einer O-Dealkylierung gespalten wird, sobald es in Kontakt mit Cytochrom P450 Enzymen kommt. Dies erklärt auch die Unwirksamkeit von Dihyate gegen dem CQ-sensitiven P. berghei N Stamm im Mausversuch bei oraler Gabe von 20mg/kg. Wir berichten hier von einem ersten Ansatz Hybridmoleküle gegen Malaria/ HIV zu entwickeln. Zukünftige Verbesserungen werden darauf abzielen Hybridmoleküle der zweiten Generation herzustellen um sowohl die Wirksamkeit gegen HIV als auch die Bioverfügbarkeit zu verbessern. Auf Grund der Entwicklung von Resistenzen gegenüber sämtliche Substanzen, die zusammen mit Artemisinin in Kombinationstherapien genutzt werden, hat die Verwendung von Antibiotika bei der Behandlung der Malaria das Interesse daran neu geweckt, Antibiotika mit starker Wirksamkeit gegenüber Plasmodium aufzuspüren. Während der vorliegenden Studie untersuchten wir die Wirksamkeit von Thiostrepton und seinen Derivaten gegenüber Plasmodium. Diese Derivate wurden durch Kombinationen von Verkürzung der Seitenkette, Oxidation und der Anbringung von lipophilen Thiolen an die endständige Dehydroaminosäure hergestellt. Wir konnten zeigen, dass die Derivate SS231 und SS234 (IC50 = 1 µM SI > 59 und SI > 77) eine bessere Wirksamkeit gegen Plasmodium besitzen als Thiostrepton (IC50 = 8.95 µM, SI = 1.7). Diese Wirksamkeit konnte bei Konzentrationen beobachtet werden, die nicht hämolytisch sind und ungiftig gegenüber menschlichen Zelllinien. Thiostrepton und seine Derivate zeigten transmissionsblockierende Eigenschaften, wenn sie in Konzentrationen, die ihren IC50- oder IC90-Werten entsprachen, eingesetzt wurden. Unsere Daten zeigen auch, dass diese Substanzen die Aktivität des Proteasoms von Plasmodium abschwächen, was zu einer Anreicherung von ubiquitinierten Proteinen führte, wenn die Parasiten mit den Substanzen in IC80-Konzentrationen inkubiert wurden. Unsere Ergebnisse sprechen dafür, dass das Proteasom ein attraktives Ziel für therapeutische Maßnahmen sein kann. In diesem Zusammenhang sind die Derivate des Thiostreptons vielversprechende Kandidaten, da sie gleichzeitig an zwei unabhängigen Zielstrukturen angreifen, dem Proteasom und dem Apicoplasten und die Fähigkeit besitzen, sowohl die asexuellen Blutstadien als auch diejenigen Blutstadien, die für die Weitergabe des Parasiten verantwortlich sind, zu beseitigen. Um unsere Ergebnisse weiter zu untermauern, untersuchten wir die Wirkung von Peptidyl-Sulfonyl-Fluoriden, einer neuen Klasse von Substanzen mit Wirksamkeit gegen Malaria und hemmender Wirkung gegenüber dem Proteasom auf die Reifung von Gametozyten. Die Substanzen AJ34 und AJ38 unterdrückten die Bildung von Gametozyten vollständig, wenn sie in Konzentrationen, die ihren IC50-Werten (0.23 µM und 0.17 µM) entsprachen, eingesetzt wurden. Dies spricht für ein starkes transmissionsblockierendes Potential dieser Substanzen. Das Proteasom, ein bedeutender proteinabbauender Komplex, der für den Abbau und die Wiedergewinnung nicht funktioneller Proteine verantwortlich ist, wurde bisher nur indirekt in P. falciparum untersucht. Zusätzlich wurde die Existenz eines, dem Proteasom-ähnlichen, Proteins mit Ähnlichkeiten zu bakteriellen ClpQ/hslV Threonin-Peptidasen in Plasmodium vermutet. Gegen die Untereinheiten alpha 5 (α5-SU), beta 5 (β5-SU) und gegen pfhslV wurden in Mäusen Antikörper generiert. Mit diesen konnten wir zeigen, dass das Proteasom sowohl in den asexuellen als auch in den sexuellen Blutstadien von P. falciparum exprimiert wird und im Zellkern und im Zytoplasma lokalisiert sind. Die Expression von PfhslV konnte jedoch nur in Trophozoiten und Schizonten beobachtet werden. Der Transport der Proteasomuntereinheiten wurde weiterhin durch die Herstellung von transgenen Parasiten, die GFP-markierte Proteine bilden, untersucht. Die Expression von α5-SU-GFP in transgenen Parasiten schien im Zytoplasma aller Blutstadien lokalisiert zu sein, wobei durch diese Parasiten keine zusätzlichen Informationen gewonnen werden konnten. Zusammengefasst sprechen unsere Daten für zwei neue Werkzeuge für Kombinationstherapien. Hybridmoleküle sind vielversprechende Werkzeuge zur Heilung von gleichzeitig mit Malaria und HIV infizierten Patienten. Sehr wirksame Antibiotika mit einem breiten Wirkungsspektrum könnten in Artemisinin-Kombinationstherapien nützlich werden, wenn es darum geht, resistente Parasiten zu beseitigen und die Übertragung sowohl der Resistenz als auch der Krankheit zu verringern. KW - Malaria KW - HIV KW - Thiostrepton KW - Arzneimitteldesign KW - Malaria KW - HIV KW - co-infection KW - drug KW - screening KW - hybrid KW - proteasome KW - thiostrepton Y1 - 2012 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-71841 ER - TY - JOUR A1 - Bischler, Thorsten A1 - Kopf, Matthias A1 - Voss, Bjoern T1 - Transcript mapping based on dRNA-seq data JF - BMC Bioinformatics N2 - Background: RNA-seq and its variant differential RNA-seq (dRNA-seq) are today routine methods for transcriptome analysis in bacteria. While expression profiling and transcriptional start site prediction are standard tasks today, the problem of identifying transcriptional units in a genome-wide fashion is still not solved for prokaryotic systems. Results: We present RNASEG, an algorithm for the prediction of transcriptional units based on dRNA-seq data. A key feature of the algorithm is that, based on the data, it distinguishes between transcribed and un-transcribed genomic segments. Furthermore, the program provides many different predictions in a single run, which can be used to infer the significance of transcriptional units in a consensus procedure. We show the performance of our method based on a well-studied dRNA-seq data set for Helicobacter pylori. Conclusions: With our algorithm it is possible to identify operons and 5'- and 3'-UTRs in an automated fashion. This alleviates the need for labour intensive manual inspection and enables large-scale studies in the area of comparative transcriptomics. KW - transcriptional start site KW - dynamic programming KW - RNA-seq KW - differential KW - segmentation KW - transcriptional uni KW - transcriptome KW - reveals KW - model Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-116663 SN - 1471-2105 VL - 15 IS - 122 ER - TY - JOUR A1 - Lavysh, Daria A1 - Sokolova, Maria A1 - Slashcheva, Marina A1 - Förstner, Konrad U. A1 - Severinov, Konstantin T1 - Transcription profiling of "bacillus subtilis" cells infected with AR9, a giant phage encoding two multisubunit RNA polymerases JF - mBio N2 - Bacteriophage AR9 is a recently sequenced jumbo phage that encodes two multisubunit RNA polymerases. Here we investigated the AR9 transcription strategy and the effect of AR9 infection on the transcription of its host, Bacillus subtilis. Analysis of whole-genome transcription revealed early, late, and continuously expressed AR9 genes. Alignment of sequences upstream of the 5′ ends of AR9 transcripts revealed consensus sequences that define early and late phage promoters. Continuously expressed AR9 genes have both early and late promoters in front of them. Early AR9 transcription is independent of protein synthesis and must be determined by virion RNA polymerase injected together with viral DNA. During infection, the overall amount of host mRNAs is significantly decreased. Analysis of relative amounts of host transcripts revealed notable differences in the levels of some mRNAs. The physiological significance of up- or downregulation of host genes for AR9 phage infection remains to be established. AR9 infection is significantly affected by rifampin, an inhibitor of host RNA polymerase transcription. The effect is likely caused by the antibiotic-induced killing of host cells, while phage genome transcription is solely performed by viral RNA polymerases. KW - Bacteriaophage AR9 KW - Transcription profiling Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-181810 VL - 8 IS - 1 ER - TY - JOUR A1 - Morschhäuser, J. A1 - Uhlin, B. E. A1 - Hacker, Jörg T1 - Transcriptional analysis and regulation of the sfa determinant coding for S fimbria of pathogenic E. coli strains N2 - The sfa determinant codes for S fimbrial adhesins which constitute adherence factors of pathogenic Escherichia coli strains. Wehave recently shown that the sfa determinant is transcribed from three prömoters, pA, pB, and pC. In comparison with the promoters pB and pC, promoter pA, which is located in front of the structural gene sfaA, showed very weak activity. Herewe have determined the exact positions ofthe mRNA start points by primer extension studies. We have also shown that mRNAs of 500, 700 and 1400 bases can be detected using oligonucleotide probes specific for the genes sfaB, sfaC and sfaA. SfaB and SfaC arepositive regulators infiuencing fimbriation and the production of the S-specific adhesin which is encoded by the gene sfaS Iocated in the distal half of the determinant. In addition, it is demonstrated that SfaB and SfaC interfere with the regulatory effect of the histone-like protein H-NS, encoded by a locus termed drdX or osmZ. In a drdx+ strain the regulators are necessary for transcription of the sfa determinant. In contrast, sfa expression is activator-independent in a drdx- strain. In this latter genetic background, a substantial fraction of the sfa transcripts is initiated from promoter pA. On the basis of these data we discuss a model for the regulation of this adhesin-specific determinant. KW - Infektionsbiologie KW - Gene regulation KW - Fimbriae KW - Adhesion KW - Transcription KW - trans-activation Y1 - 1993 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-59844 ER - TY - JOUR A1 - Pernitzsch, Sandy R. A1 - Sharma, Cynthia M. T1 - Transcriptome Complexity and Riboregulation in the Human Pathogen Helicobacter pylori KW - Medizin KW - RNA-seq KW - sRNA KW - Helicobacterpylori KW - post-transcriptionalregulation KW - transcriptomeanalysis Y1 - 2012 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-75096 ER - TY - JOUR A1 - Hickey, Scott F. A1 - Sridhar, Malathy A1 - Westermann, Alexander J. A1 - Qin, Qian A1 - Vijayendra, Pooja A1 - Liou, Geoffrey A1 - Hammond, Ming C. T1 - Transgene regulation in plants by alternative splicing of a suicide exon JF - Nucleic Acids Research N2 - Compared to transcriptional activation, other mechanisms of gene regulation have not been widely exploited for the control of transgenes. One barrier to the general use and application of alternative splicing is that splicing-regulated transgenes have not been shown to be reliably and simply designed. Here, we demonstrate that a cassette bearing a suicide exon can be inserted into a variety of open reading frames (ORFs), generating transgenes whose expression is activated by exon skipping in response to a specific protein inducer. The surprisingly minimal sequence requirements for the maintenance of splicing fidelity and regulation indicate that this splicing cassette can be used to regulate any ORF containing one of the amino acids Glu, Gln or Lys. Furthermore, a single copy of the splicing cassette was optimized by rational design to confer robust gene activation with no background expression in plants. Thus, conditional splicing has the potential to be generally useful for transgene regulation. KW - kingdom KW - pre-messenger RNA KW - gene expression KW - elements KW - decay KW - arabidopsis KW - eukaryotes KW - mechanisms Y1 - 2012 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-134724 VL - 40 IS - 10 ER - TY - JOUR A1 - Schielmann, Marta A1 - Szweda, Piotr A1 - Gucwa, Katarzyna A1 - Kawczyński, Marcin A1 - Milewska, Maria J. A1 - Martynow, Dorota A1 - Morschhäuser, Joachim A1 - Milewski, Sławomir T1 - Transport deficiency is the molecular basis of \(Candida\) \(albicans\) resistance to antifungal oligopeptides JF - Frontiers in Microbiology N2 - Oligopeptides incorporating \(N3\)-(4-methoxyfumaroyl)-L-2,3-diaminopropanoic acid (FMDP), an inhibitor of glucosamine-6-phosphate synthase, exhibited growth inhibitory activity against \(Candida\) \(albicans\), with minimal inhibitory concentration values in the 0.05–50 μg mL\(^{-1}\) range. Uptake by the peptide permeases was found to be the main factor limiting an anticandidal activity of these compounds. Di- and tripeptide containing FMDP (F2 and F3) were transported by Ptr2p/Ptr22p peptide transporters (PTR) and FMDP-containing hexa-, hepta-, and undecapeptide (F6, F7, and F11) were taken up by the oligopeptide transporters (OPT) oligopeptide permeases, preferably by Opt2p/Opt3p. A phenotypic, apparent resistance of \(C. albicans\) to FMDP-oligopeptides transported by OPT permeases was triggered by the environmental factors, whereas resistance to those taken up by the PTR system had a genetic basis. Anticandidal activity of longer FMDP-oligopeptides was strongly diminished in minimal media containing easily assimilated ammonium sulfate or L-glutamine as the nitrogen source, both known to downregulate expression of the OPT genes. All FMDP-oligopeptides tested were more active at lower pH and this effect was slightly more remarkable for peptides F6, F7, and F11, compared to F2 and F3. Formation of isolated colonies was observed inside the growth inhibitory zones induced by F2 and F3 but not inside those induced by F6, F7, and F11. The vast majority (98%) of those colonies did not originate from truly resistant cells. The true resistance of 2% of isolates was due to the impaired transport of di- and to a lower extent, tripeptides. The resistant cells did not exhibit a lower expression of \(PTR2\), \(PTR22\), or \(OPT1–3\) genes, but mutations in the \(PTR2\) gene resulting in T422H, A320S, D119V, and A320S substitutions in the amino acid sequence of Ptr2p were found. KW - microbiology KW - Candida albicans KW - oligopeptides KW - resistance mechanism KW - permease KW - antifungals Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-173245 VL - 8 ER - TY - JOUR A1 - Szalay, Aladar A A1 - Weibel, Stephanie A1 - Hofmann, Elisabeth A1 - Basse-Luesebrink, Thomas Christian A1 - Donat, Ulrike A1 - Seubert, Carolin A1 - Adelfinger, Marion A1 - Gnamlin, Prisca A1 - Kober, Christina A1 - Frentzen, Alexa A1 - Gentschev, Ivaylo A1 - Jakob, Peter Michael T1 - Treatment of malignant effusion by oncolytic virotherapy in an experimental subcutaneous xenograft model of lung cancer JF - Journal of Translational Medicine N2 - Background Malignant pleural effusion (MPE) is associated with advanced stages of lung cancer and is mainly dependent on invasion of the pleura and expression of vascular endothelial growth factor (VEGF) by cancer cells. As MPE indicates an incurable disease with limited palliative treatment options and poor outcome, there is an urgent need for new and efficient treatment options. Methods In this study, we used subcutaneously generated PC14PE6 lung adenocarcinoma xenografts in athymic mice that developed subcutaneous malignant effusions (ME) which mimic pleural effusions of the orthotopic model. Using this approach monitoring of therapeutic intervention was facilitated by direct observation of subcutaneous ME formation without the need of sacrificing mice or special imaging equipment as in case of MPE. Further, we tested oncolytic virotherapy using Vaccinia virus as a novel treatment modality against ME in this subcutaneous PC14PE6 xenograft model of advanced lung adenocarcinoma. Results We demonstrated significant therapeutic efficacy of Vaccinia virus treatment of both advanced lung adenocarcinoma and tumor-associated ME. We attribute the efficacy to the virus-mediated reduction of tumor cell-derived VEGF levels in tumors, decreased invasion of tumor cells into the peritumoral tissue, and to viral infection of the blood vessel-invading tumor cells. Moreover, we showed that the use of oncolytic Vaccinia virus encoding for a single-chain antibody (scAb) against VEGF (GLAF-1) significantly enhanced mono-therapy of oncolytic treatment. Conclusions Here, we demonstrate for the first time that oncolytic virotherapy using tumor-specific Vaccinia virus represents a novel and promising treatment modality for therapy of ME associated with advanced lung cancer. KW - Oncolytic virotherapy KW - Malignant effusion KW - Lung cancer KW - VEGF KW - Lungenkrebs KW - Vascular endothelial Growth Factor Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-96016 UR - http://www.translational-medicine.com/content/11/1/106 ER - TY - JOUR A1 - Bogdan, Christian A1 - Moll, Heidrun A1 - Solbach, Werner A1 - Röllinghoff, Martin T1 - Tumor necrosis factor-\(\alpha\) in combination with interferon-\(\gamma\), but not with interleukin 4 activates murine macrophages for elimination of Leishmania major amastigotes N2 - We have previously shown that during an infection with Leishmania major, susceptible BALB/c mice, as opposed to mice of a resistant strain (C57BLl6), are primed by lipopolysaccharide for the production of high levels of tumor necrosis factor-\(\alpha\) (TNF-\(\alpha\)) which is known to be a potent maerophage M\(\Phi\) stimulator in other parasitic diseases. In the present study we investigated whether TNF-\(\alpha\) activates M\(\Phi\) for killing of L. major parasites. In the absence of interferon-y (IFN-\(\gamma\)) or lipopolysaccharide, TNF-\(\alpha\) (0.025-25000 U/ml) failed to activate peritoneal exudate M\(\Phi\) from BALB/c mice for killling of L. major amastigotes. In the presence of suboptimal doses of IFN-\(\gamma\) (5 or 10 Vlml), however, TNF-\(\alpha\) mediated a rapid elimination of intracellular parasites, which was highly significant compared to IFN-\(\gamma\) alone. Tbe combination of TNF with interleukin 4, in contrast, was inactive in this respect and allowed survival of intracellular parasites. From these data we conelude that the presence of IFN-\(\gamma\) is crucial for TNF-\(\alpha\)-mediated killing of L. major parasites by M\(\Phi\). Disease progression in susceptible mice therefore seems to be a consequence of a deficiency of IFN-\(\gamma\) and a predominance of interleukin 4 rather than the result of an excess amount of TNF-\(\alpha\). KW - Infektionsbiologie Y1 - 1990 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-31614 VL - 20 SP - 1131 EP - 1135 ER - TY - JOUR A1 - Schmoll, T. A1 - Ott, M. A1 - Ougeda, B. A1 - Hacker, Jörg T1 - Use of a wild-type gene fusion to determine the influence of environmental conditions on expression of the S fimbrial adhesin in an Escherichia coli pathogen N2 - S fimbrial adhesins (Sfa) enable pathogenic Escherichia coli strains to bind to sialic acid-containing eucaryotic receptor molecules. In order to determine the inftuence of culture conditions on the expression of the sfa determinant in a wild-type strain, we fused the gene lacZ, coding for the enzyme ß-galactosidase, to the sfaA gene, responsible for the major protein subunit of S fimbriae. By using a plasmid which carries an R6K origin, the sfaA-Iac hybrid construct was site-specifically integrated into the chromosome of the uropathogenic E. coli strain S36WT. The expression of lacZ, which was under the control of the sfa wild-type promoters, was now equivalent to the sfa expression of strain S36WT. With the help of this particular wild-type construct, it was demonstrated that the sfa determinant is better expressed on solid media than in liquid broth. The growth rate bad a strong inftuence on Sfa expression under aerobic but not under anaerobic conditions. Production of Sfa was further regulated by catabolite repression, osmolarity, and temperature. KW - Infektionsbiologie Y1 - 1990 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-59625 ER - TY - JOUR A1 - Homberger, Christina A1 - Barquist, Lars A1 - Vogel, Jörg T1 - Ushering in a new era of single-cell transcriptomics in bacteria JF - microLife N2 - Transcriptome analysis of individual cells by single-cell RNA-seq (scRNA-seq) has become routine for eukaryotic tissues, even being applied to whole multicellular organisms. In contrast, developing methods to read the transcriptome of single bacterial cells has proven more challenging, despite a general perception of bacteria as much simpler than eukaryotes. Bacterial cells are harder to lyse, their RNA content is about two orders of magnitude lower than that of eukaryotic cells, and bacterial mRNAs are less stable than their eukaryotic counterparts. Most importantly, bacterial transcripts lack functional poly(A) tails, precluding simple adaptation of popular standard eukaryotic scRNA-seq protocols that come with the double advantage of specific mRNA amplification and concomitant depletion of rRNA. However, thanks to very recent breakthroughs in methodology, bacterial scRNA-seq is now feasible. This short review will discuss recently published bacterial scRNA-seq approaches (MATQ-seq, microSPLiT, and PETRI-seq) and a spatial transcriptomics approach based on multiplexed in situ hybridization (par-seqFISH). Together, these novel approaches will not only enable a new understanding of cell-to-cell variation in bacterial gene expression, they also promise a new microbiology by enabling high-resolution profiling of gene activity in complex microbial consortia such as the microbiome or pathogens as they invade, replicate, and persist in host tissue. KW - single-cell RNA-seq KW - heterogeneity KW - microSPLiT KW - PETRI-seq KW - MATQ-seq KW - par-seqFISH Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-313292 VL - 3 ER - TY - JOUR A1 - Gholami, Sepideh A1 - Chen, Chun-Hao A1 - Belin, Laurence J. A1 - Lou, Emil A1 - Fujisawa, Sho A1 - Antonacci, Caroline A1 - Carew, Amanda A1 - Chen, Nanhai G. A1 - De Brot, Marina A1 - Zanzonico, Pat B. A1 - Szalay, Aladar A. A1 - Fong, Yuman T1 - Vaccinia virus GLV-1h153 is a novel agent for detection and effective local control of positive surgical margins for breast cancer JF - Breast Cancer Research N2 - Introduction: Surgery is currently the definitive treatment for early-stage breast cancer. However, the rate of positive surgical margins remains unacceptably high. The human sodium iodide symporter (hNIS) is a naturally occurring protein in human thyroid tissue, which enables cells to concentrate radionuclides. The hNIS has been exploited to image and treat thyroid cancer. We therefore investigated the potential of a novel oncolytic vaccinia virus GLV1h-153 engineered to express the hNIS gene for identifying positive surgical margins after tumor resection via positron emission tomography (PET). Furthermore, we studied its role as an adjuvant therapeutic agent in achieving local control of remaining tumors in an orthotopic breast cancer model. Methods: GLV-1h153, a replication-competent vaccinia virus, was tested against breast cancer cell lines at various multiplicities of infection (MOIs). Cytotoxicity and viral replication were determined. Mammary fat pad tumors were generated in athymic nude mice. To determine the utility of GLV-1h153 in identifying positive surgical margins, 90% of the mammary fat pad tumors were surgically resected and subsequently injected with GLV-1h153 or phosphate buffered saline (PBS) in the surgical wound. Serial Focus 120 microPET images were obtained six hours post-tail vein injection of approximately 600 mu Ci of I-124-iodide. Results: Viral infectivity, measured by green fluorescent protein (GFP) expression, was time-and concentrationdependent. All cell lines showed less than 10% of cell survival five days after treatment at an MOI of 5. GLV-1h153 replicated efficiently in all cell lines with a peak titer of 27 million viral plaque forming units (PFU) ( < 10,000-fold increase from the initial viral dose) by Day 4. Administration of GLV-1h153 into the surgical wound allowed positive surgical margins to be identified via PET scanning. In vivo, mean volume of infected surgically resected residual tumors four weeks after treatment was 14 mm(3) versus 168 mm(3) in untreated controls (P < 0.05). Conclusions: This is the first study to our knowledge to demonstrate a novel vaccinia virus carrying hNIS as an imaging tool in identifying positive surgical margins of breast cancers in an orthotopic murine model. Moreover, our results suggest that GLV-1h153 is a promising therapeutic agent in achieving local control for positive surgical margins in resected breast tumors. KW - conservation KW - carcinoma KW - mastectomy KW - metastases KW - stage-i KW - thyroid-cancer KW - radiation-therapy KW - conserving surgery KW - sodium-iodide symporter Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-122140 VL - 15 IS - R26 ER - TY - JOUR A1 - Umstätter, Florian A1 - Domhan, Cornelius A1 - Hertlein, Tobias A1 - Ohlsen, Knut A1 - Mühlberg, Eric A1 - Kleist, Christian A1 - Zimmermann, Stefan A1 - Beijer, Barbro A1 - Klika, Karel D. A1 - Haberkorn, Uwe A1 - Mier, Walter A1 - Uhl, Philipp T1 - Vancomycin Resistance Is Overcome by Conjugation of Polycationic Peptides JF - Angewandte Chemie International Edition N2 - Multidrug‐resistant bacteria represent one of the biggest challenges facing modern medicine. The increasing prevalence of glycopeptide resistance compromises the efficacy of vancomycin, for a long time considered as the last resort for the treatment of resistant bacteria. To reestablish its activity, polycationic peptides were conjugated to vancomycin. By site‐specific conjugation, derivatives that bear the peptide moiety at four different sites of the antibiotic were synthesized. The most potent compounds exhibited an approximately 1000‐fold increased antimicrobial activity and were able to overcome the most important types of vancomycin resistance. Additional blocking experiments using d‐Ala‐d‐Ala revealed a mode of action beyond inhibition of cell‐wall formation. The antimicrobial potential of the lead candidate FU002 for bacterial infection treatments could be demonstrated in an in vivo study. Molecular imaging and biodistribution studies revealed that conjugation engenders superior pharmacokinetics. KW - antibiotics KW - bacterial resistance KW - glycopeptide antibiotics KW - peptide conjugates KW - vancomycin Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-215550 VL - 59 IS - 23 SP - 8823 EP - 8827 ER - TY - JOUR A1 - Mühlberg, Eric A1 - Umstätter, Florian A1 - Domhan, Cornelius A1 - Hertlein, Tobias A1 - Ohlsen, Knut A1 - Krause, Andreas A1 - Kleist, Christian A1 - Beijer, Barbro A1 - Zimmermann, Stefan A1 - Haberkorn, Uwe A1 - Mier, Walter A1 - Uhl, Philipp T1 - Vancomycin-lipopeptide conjugates with high antimicrobial activity on vancomycin-resistant enterococci JF - Pharmaceuticals N2 - Multidrug-resistant bacteria represent one of the most important health care problems worldwide. While there are numerous drugs available for standard therapy, there are only a few compounds capable of serving as a last resort for severe infections. Therefore, approaches to control multidrug-resistant bacteria must be implemented. Here, a strategy of reactivating the established glycopeptide antibiotic vancomycin by structural modification with polycationic peptides and subsequent fatty acid conjugation to overcome the resistance of multidrug-resistant bacteria was followed. This study especially focuses on the structure–activity relationship, depending on the modification site and fatty acid chain length. The synthesized conjugates showed high antimicrobial potential on vancomycin-resistant enterococci. We were able to demonstrate that the antimicrobial activity of the vancomycin-lipopeptide conjugates depends on the chain length of the attached fatty acid. All conjugates showed good cytocompatibility in vitro and in vivo. Radiolabeling enabled the in vivo determination of pharmacokinetics in Wistar rats by molecular imaging and biodistribution studies. An improved biodistribution profile in comparison to unmodified vancomycin was observed. While vancomycin is rapidly excreted by the kidneys, the most potent conjugate shows a hepatobiliary excretion profile. In conclusion, these results demonstrate the potential of the structural modification of already established antibiotics to provide highly active compounds for tackling multidrug-resistant bacteria. KW - antibiotics KW - multidrug-resistant bacteria KW - enterococci KW - vancomycin KW - structural modification KW - fatty acids KW - polycationic peptides Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-205879 SN - 1424-8247 VL - 13 IS - 6 ER - TY - JOUR A1 - Reuter, Christian A1 - Hauf, Laura A1 - Imdahl, Fabian A1 - Sen, Rituparno A1 - Vafadarnejad, Ehsan A1 - Fey, Philipp A1 - Finger, Tamara A1 - Jones, Nicola G. A1 - Walles, Heike A1 - Barquist, Lars A1 - Saliba, Antoine-Emmanuel A1 - Groeber-Becker, Florian A1 - Engstler, Markus T1 - Vector-borne Trypanosoma brucei parasites develop in artificial human skin and persist as skin tissue forms JF - Nature Communications N2 - Transmission of Trypanosoma brucei by tsetse flies involves the deposition of the cell cycle-arrested metacyclic life cycle stage into mammalian skin at the site of the fly’s bite. We introduce an advanced human skin equivalent and use tsetse flies to naturally infect the skin with trypanosomes. We detail the chronological order of the parasites’ development in the skin by single-cell RNA sequencing and find a rapid activation of metacyclic trypanosomes and differentiation to proliferative parasites. Here we show that after the establishment of a proliferative population, the parasites enter a reversible quiescent state characterized by slow replication and a strongly reduced metabolism. We term these quiescent trypanosomes skin tissue forms, a parasite population that may play an important role in maintaining the infection over long time periods and in asymptomatic infected individuals. KW - mechanisms of disease KW - parasitology KW - transcriptomics Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-358142 VL - 14 ER - TY - THES A1 - Schmitt, Susanne T1 - Vertical microbial transmission in Caribbean bacteriosponges T1 - Vertikale Weitergabe von Mikroorganismen in karibischen Schwämmen N2 - Bakterienhaltige Schwämme sind durch große Mengen an morphologisch und phylogenetisch unterschiedlichen Mikroorganismen im Mesohyl gekennzeichnet. Diese mikrobiellen Konsortien sind permanent, stabil und hoch-spezifisch mit den Wirts-Schwämmen assoziiert. Über die Entstehung und die Aufrechterhaltung dieser Assoziation ist jedoch wenig bekannt. Es war das erste Ziel dieser Doktorarbeit, Co-Speziation zwischen mediterranen und karibischen Schwämmen der Gattung Aplysina und assoziierten Cyanobakterien zu untersuchen. Die Wirtsphylogenie wurde sowohl mit 18S rDNA als auch mit ITS-2 Sequenzen erstellt. Das Alignment basierte auf der Sekundärstruktur des jeweiligen molekularen Markers und jeder phylogenetische Stammbaum wurde mit 5 verschiedenen Algorithmen berechnet. Die Gattung Aplysina erschien monophyletisch. Die verschiedenen Arten konnten einer Karibik- und einer Mittelmeer-Gruppe zugeordnet werden und der Ursprung der Gattung Aplysina im Urmeer Tethys erscheint möglich. Der Vergleich von Wirts- und Cyanobakterien-Phylogenie, welche auf 16S rDNA Sequenzen beruht, zeigte, dass die Topologie der Stammbäume sich nicht spiegelbildlich gegenübersteht. Es wird daher angenommen, dass keine Co-Speziation zwischen Aplysina Schwämmen und Cyanobakterien und wahrscheinlich auch nicht mit anderen Schwamm-spezifischen Mikroorganismen vorliegt. Das zweite Ziel dieser Doktorarbeit war, die vertikale Weitergabe von Mikroorganismen über Reproduktionsstadien in Schwämmen zu untersuchen. Eine umfangreiche elektronenmikroskopische Studie zeigte eine klare Korrelation, da bakterienhaltige Schwämme immer auch unterschiedliche mikrobielle Morphotypen in den Reproduktionsstadien aufwiesen, wohingegen in den Reproduktionsstadien bakterienarmer Schwämme keine Mikroorganismen gefunden wurden. Aus diesen Ergebnissen wird die Weitergabe des mikrobiellen Konsortiums über Reproduktionsstadien bakterienhaltiger Schwämme geschlossen. Basierend auf den vorherigen Ergebnissen wurde Ircinia felix für eine detaillierte Dokumentation der vertikalen Weitergabe von Mikroorganismen ausgewählt. Elektronenmikroskopische Aufnahmen zeigten, dass die Larven von I. felix im zentralen Bereich große Mengen an extrazellulären Mikroorganismen enthielten während der äußere Bereich nahezu frei von Mikroorganismen war. In I. felix Juvenilschwämmen waren die Mikroorganismen zwischen eng gepackten Schwammzellen lokalisiert. Die mikrobiellen Profile von I. felix Adult, Larven und Juvenilen wurden mittels Denaturierender-Gradienten-Gel-Elektrophorese (DGGE) verglichen. Ähnliche mikrobielle Diversitätsmuster waren im Adultschwamm und den respektiven Larven vorhanden. Dies deutet darauf hin, dass ein großer Anteil des adulten mikrobiellen Konsortiums vertikal weitergegeben wird. Im Gegensatz dazu schienen die mikrobiellen Konsortien von Larven, die von unterschiedlichen Adultindividuen stammten, insgesamt variabler zu sein. Die Bandenmuster der Juvenilschwämme waren eine Mischung aus Schwamm-spezifischen und Seewassermikroorganismen, was auf die Methodik der DNA-Extraktion zurückgeführt werden kann. Allerdings kann gesagt werden, dass mindestens die Hälfte des adulten mikrobiellen Konsortiums in der nächsten Generation vorhanden war. Schließlich wurde eine umfangreiche phylogenetische Analyse mit Sequenzen aus Adultschwämmen und Larven durchgeführt. Die Sequenzen wurden durch Sequenzierung von ausgeschnittenen DGGE-Banden der bakterienhaltigen Schwämme Agelas wiedenmayeri, I. felix und Smenospongia aurea gewonnen. Zusätzlich wurden bislang unveröffentlichte Sequenzen aus den Schwämmen Ectyoplasia ferox und Xestospongia muta verwendet, die im Labor erstellt worden waren. Die Identifizierung von 24 "vertical transmission clusters" in mindestens 8 verschiedenen, eubakteriellen Phyla zeigt, dass ein komplexes, aber einheitliches, mikrobielles Konsortium über die Reproduktionsstadien weitergegeben wird. Der Prozess der vertikalen Weitergabe ist spezifisch, da Mikroorganismen der bakterienhaltigen Schwämme, nicht aber Seewasser-Mikroorganismen weitergegeben werden. Zugleich scheint der Prozess der vertikalen Weitergabe nicht selektiv zu sein, da keine Unterscheidung zwischen einzelnen, Schwamm-spezifischen Mikroorganismen erfolgt. Insgesamt deutet vertikale Weitergabe auf eine mutualistische und seit langem bestehende Assoziation zwischen bakterienhaltigen Schwämmen und komplexen, mikrobiellen Konsortien hin. N2 - Bacteriosponges contain large amounts of morphologically and phylogenetically diverse microorganisms in their mesohyl. The association is permanent, stable and highly specific, however, little is known about the establishment and maintenance of this association. The first aim of this Ph.D. thesis was to examine cospeciation between eight Aplysina species from the Mediterranean and Caribbean and their cyanobacterial associates. Host phylogeny was constructed with 18S rDNA and ITS-2 sequences using an alignment based on the secondary structure of the molecular markers and five different algorithms each. The genus Aplysina appeared as monophyletic. Aplysina sponges could be distinguished into a Caribbean and a Mediterranean cluster and a possible Tethyan origin is suggested. Comparison of the host phylogeny to the 16S rDNA phylogeny of the cyanobacterial strains revealed the lack of a congruent pattern. Therefore it is proposed that Aplysina sponges have not cospeciated with their cyanobacterial phylotypes and probably also not with other sponge specific microbes. The second aim of this Ph.D. thesis was to examine vertical transmission of microorganisms through reproductive stages of sponges. A general transmission electron microscopy (TEM) suvey revealed a clear correlation in that bacteriosponges always contained many microorganisms in their reproductive stages whereas non-bacteriosponges were always devoid of microbes in their reproductive stages. The transmission of the microbial community via sponge reproductive stages is concluded. Based on the previous results Ircinia felix was chosen for a detailed documentation of vertical transmission. I. felix larvae contained large amounts of microorganisms extracellularly in the central region whereas the outer region was almost free of microbes as shown by TEM. In I. felix juveniles microorganisms were located between densely packed sponge cells. The microbial profiles of I. felix adult, larvae, and juveniles were compared using denaturing gradient gel electrophoresis (DGGE). Similar microbial community patterns were found in adult and the respective larvae indicating that a large subset of the adult microbial community was vertically transmitted. In contrast, microbial communities of larvae pools released by different adult individuals seemed to be more variable. Juvenile banding patterns were a mixture of sponge specific and seawater microbes due to DNA extraction artefacts but demonstrated that at least half of the adult microbial community is present in the next generation. Finally, a comprehensive phylogenetic analysis was conducted by sequencing excised DGGE bands from adult and offspring of the bacteriosponges Agelas wiedenmayeri, I. felix, and Smenospongia aurea and by taking additional 16S rDNA sequences of Ectyoplasia ferox and Xestospongia muta (unpublished data of the laboratory). The identification of 24 vertical transmission clusters in at least 8 eubacterial phyla demonstrates that a complex and uniform microbial community is transferred via sponge reproductive stages. Vertical transmission is specific in that the microorganisms of bacteriosponges, but not those from seawater, are passed on, but unselective in that there appears to be no differentiation between individual sponge-specific lineages. In conclusion, vertical transmission points to a mutualistic and long-term association of bacteriosponges and complex microbial consortia. KW - Schwamm KW - Koevolution KW - mikrobielle Ökologie KW - mikrobielle Diversität KW - Vertikale Weitergabe KW - sponge KW - coevolution KW - microbial ecology KW - microbial diversity KW - vertical transmission Y1 - 2007 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-23621 ER - TY - JOUR A1 - Weibel, Stephanie A1 - Raab, Viktoria A1 - Yu, Yong A. A1 - Worschech, Andrea A1 - Wang, Ena A1 - Marincola, Francesco M. A1 - Szalay, Aladar A. T1 - Viral-mediated oncolysis is the most critical factor in the late-phase of the tumor regression process upon vaccinia virus infection N2 - Background: In principle, the elimination of malignancies by oncolytic virotherapy could proceed by different mechanisms - e.g. tumor cell specific oncolysis, destruction of the tumor vasculature or an anti-tumoral immunological response. In this study, we analyzed the contribution of these factors to elucidate the responsible mechanism for regression of human breast tumor xenografts upon colonization with an attenuated vaccinia virus (VACV). Methods: Breast tumor xenografts were analyzed 6 weeks post VACV infection (p.i.; regression phase) by immunohistochemistry and mouse-specific expression arrays. Viral-mediated oncolysis was determined by tumor growth analysis combined with microscopic studies of intratumoral virus distribution. The tumor vasculature was morphologically characterized by diameter and density measurements and vessel functionality was analyzed by lectin perfusion and extravasation studies. Immunological aspects of viral-mediated tumor regression were studied in either immune-deficient mouse strains (T-, B-, NK-cell-deficient) or upon cyclophosphamide-induced immunosuppression (MHCII+-cell depletion) in nude mice. Results: Late stage VACV-infected breast tumors showed extensive necrosis, which was highly specific to cancer cells. The tumor vasculature in infected tumor areas remained functional and the endothelial cells were not infected. However, viral colonization triggers hyperpermeability and dilatation of the tumor vessels, which resembled the activated endothelium in wounded tissue. Moreover, we demonstrated an increased expression of genes involved in leukocyte-endothelial cell interaction in VACV-infected tumors, which orchestrate perivascular inflammatory cell infiltration. The immunohistochemical analysis of infected tumors displayed intense infiltration of MHCII-positive cells and colocalization of tumor vessels with MHCII+/CD31+ vascular leukocytes. However, GI-101A tumor growth analysis upon VACV-infection in either immunosuppressed nude mice (MHCII+-cell depleted) or in immune-deficient mouse strains (T-, B-, NK-cell-deficient) revealed that neither MHCII-positive immune cells nor T-, B-, or NK cells contributed significantly to VACV-mediated tumor regression. In contrast, tumors of immunosuppressed mice showed enhanced viral spreading and tumor necrosis. Conclusions: Taken together, these results indicate that VACV-mediated oncolysis is the primary mechanism of tumor shrinkage in the late regression phase. Neither the destruction of the tumor vasculature nor the massive VACV-mediated intratumoral inflammation was a prerequisite for tumor regression. We propose that approaches to enhance viral replication and spread within the tumor microenvironment should improve therapeutical outcome. KW - Virusinfektion KW - Krebs Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-68691 ER - TY - JOUR A1 - Blum, G. A1 - Ott, M. A1 - Cross, A. A1 - Hacker, Jörg T1 - Virulence determinants of Escherichia coli O6 extraintestinal isolates analysed by Southern hybridizations and DNA long range mapping techniques N2 - A total of 16 Escherichia coli 06 strains isolated from cases of extraintestinal infections were analysed for the genetic presence and phenotypic expression of fimbrial adhesins ( P, S/FIC, type I), aerobactin and hemolysin. ln addition restriction fragment length polymorphisms (RFLPs) of Xbal-cleaved genomic DNA of seven selected strains, separated by orthogonal field alternation gel electrophoresis {OFAGE) were determined and virulence-associated DNA probes were used for Southern hybridization studies of the Xbal-cleaved genomic DNAs. The virulence characteristics and hybridization patterns obtained differed between the various isolates. ln three isolates hemolysin genes and P fimbrial determinants were located on the same Xbal fragments. Furthermore, multiple copies of FIC determinants (foc) could be detected in two strains. Our data show that the new technique of pulse field electrophoresis tagether with Southern hybridization represents a powerful tool for the genetic analysis of pathogenic bacteria. KW - Infektionsbiologie KW - E. coli serotype 06 KW - extraintestinal isolates KW - virulence factors KW - gene probes KW - DNA lang range mapping KW - epidemiology Y1 - 1991 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-59717 ER - TY - JOUR A1 - Ott, M. A1 - Bender, L. A1 - Blum, G. A1 - Schmittroth, M. A1 - Achtmann, M. A1 - Tschäpe, H. A1 - Hacker, Jörg T1 - Virulence patterns and long range mapping of extraintestinal Escherichia coli K1, K5 and K100 isolates: Use of pulse field gel electrophoresis N2 - A total of 127 extraintestinal Escherichia coli strains of the capsule serotypes Kl, KS, and KlOO from human and animal sources were analyzed for DNA sequences specific for the genes for various adhesins (P fimbriae fpap] and P-related sequences fprs], S fimbriae [s/a)/FlC fimbriae [foc], and type I fimbriae lfim]), aerobactin (aer), and hemolysin (hly). The expression of corresponding virulence factors was also tested. Twenty-four selected strains were analyzed by long-range DNA mapping to evaluate their genetic relationships. DNA sequences for the adhesins were often found in strains not expressing them, while strains with hemolysin and aerobactin genes usually did express them. Different isolates of the same serotype orten expressed different virulence patterns. The use of virulence-associated gene probes for Southern hybridization with genomic DNA fragments separated by pulsed-field gel electrophoresis revealed that a highly heterogeneous restriction fragment length and hybridization pattern existed even within strains of the same serotype. Long-range DNA mapping is therefore useful for the evaluation of genetic relatedness among individual isolates and facilitates the performance of .precise molecular epidemiology. KW - Infektionsbiologie Y1 - 1991 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-59738 ER - TY - JOUR A1 - Hertlein, Tobias A1 - Sturm, Volker A1 - Kircher, Stefan A1 - Basse-Lüsebrink, Thomas A1 - Haddad, Daniel A1 - Ohlsen, Knut A1 - Jakob, Peter T1 - Visualization of Abscess Formation in a Murine Thigh Infection Model of \(Staphylococcus\) \(aureus\) by (19)F-Magnetic Resonance Imaging (MRI) JF - PLoS ONE N2 - Background: During the last years, (19)F-MRI and perfluorocarbon nanoemulsion (PFC) emerged as a powerful contrast agent methodology to track cells and to visualize inflammation. We applied this new modality to visualize deep tissue abscesses during acute and chronic phase of inflammation caused by Staphylococcus aureus infection. Methodology and Principal Findings: In this study, a murine thigh infection model was used to induce abscess formation and PFC or CLIO (cross linked ironoxides) was administered during acute or chronic phase of inflammation. 24 h after inoculation, the contrast agent accumulation was imaged at the site of infection by MRI. Measurements revealed a strong accumulation of PFC at the abscess rim at acute and chronic phase of infection. The pattern was similar to CLIO accumulation at chronic phase and formed a hollow sphere around the edema area. Histology revealed strong influx of neutrophils at the site of infection and to a smaller extend macrophages during acute phase and strong influx of macrophages at chronic phase of inflammation. Conclusion and Significance: We introduce (19)F-MRI in combination with PFC nanoemulsions as a new platform to visualize abscess formation in a murine thigh infection model of S. aureus. The possibility to track immune cells in vivo by this modality offers new opportunities to investigate host immune response, the efficacy of antibacterial therapies and the influence of virulence factors for pathogenesis. KW - Soft-tissue infection KW - In-vivo KW - Iron-oxide KW - F-19 MRI KW - Inflammation KW - Particles KW - Tracking KW - Lesions KW - Images KW - Rats Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-142846 VL - 6 IS - 3 ER - TY - JOUR A1 - Mietchen, Daniel A1 - Hagedorn, Gregor A1 - Förstner, Konrad U. A1 - Kubke, M Fabiana A1 - Koltzenburg, Claudia A1 - Hahnel, Mark J. A1 - Penev, Lyubomir T1 - Wikis in scholarly publishing N2 - Scientific research is a process concerned with the creation, collective accumulation, contextualization, updating and maintenance of knowledge. Wikis provide an environment that allows to collectively accumulate, contextualize, update and maintain knowledge in a coherent and transparent fashion. Here, we examine the potential of wikis as platforms for scholarly publishing. In the hope to stimulate further discussion, the article itself was drafted on Species-ID – a wiki that hosts a prototype for wiki-based scholarly publishing – where it can be updated, expanded or otherwise improved. KW - Elektronisches Publizieren KW - wikis KW - scientific publishing KW - scholarly publishing KW - reputation KW - version control Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-87770 ER -