TY - JOUR A1 - Villagomez, Gemma N. A1 - Nürnberger, Fabian A1 - Requier, Fabrice A1 - Schiele, Susanne A1 - Steffan-Dewenter, Ingo T1 - Effects of temperature and photoperiod on the seasonal timing of Western honey bee colonies and an early spring flowering plant JF - Ecology and Evolution N2 - Temperature and photoperiod are important Zeitgebers for plants and pollinators to synchronize growth and reproduction with suitable environmental conditions and their mutualistic interaction partners. Global warming can disturb this temporal synchronization since interacting species may respond differently to new combinations of photoperiod and temperature under future climates, but experimental studies on the potential phenological responses of plants and pollinators are lacking. We simulated current and future combinations of temperature and photoperiod to assess effects on the overwintering and spring phenology of an early flowering plant species (Crocus sieberi) and the Western honey bee (Apis mellifera). We could show that increased mean temperatures in winter and early spring advanced the flowering phenology of C. sieberi and intensified brood rearing activity of A. mellifera but did not advance their brood rearing activity. Flowering phenology of C. sieberi also relied on photoperiod, while brood rearing activity of A. mellifera did not. The results confirm that increases in temperature can induce changes in phenological responses and suggest that photoperiod can also play a critical role in these responses, with currently unknown consequences for real-world ecosystems in a warming climate. KW - Apis mellifera KW - climate change KW - rocus sieberi KW - phenology KW - plant–pollinator interaction KW - temporal mismatch Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-258770 VL - 11 IS - 12 ER - TY - JOUR A1 - Uphus, Lars A1 - Lüpke, Marvin A1 - Yuan, Ye A1 - Benjamin, Caryl A1 - Englmeier, Jana A1 - Fricke, Ute A1 - Ganuza, Cristina A1 - Schwindl, Michael A1 - Uhler, Johannes A1 - Menzel, Annette T1 - Climate effects on vertical forest phenology of Fagus sylvatica L., sensed by Sentinel-2, time lapse camera, and visual ground observations JF - Remote Sensing N2 - Contemporary climate change leads to earlier spring phenological events in Europe. In forests, in which overstory strongly regulates the microclimate beneath, it is not clear if further change equally shifts the timing of leaf unfolding for the over- and understory of main deciduous forest species, such as Fagus sylvatica L. (European beech). Furthermore, it is not known yet how this vertical phenological (mis)match — the phenological difference between overstory and understory — affects the remotely sensed satellite signal. To investigate this, we disentangled the start of season (SOS) of overstory F.sylvatica foliage from understory F. sylvatica foliage in forests, within nine quadrants of 5.8 × 5.8 km, stratified over a temperature gradient of 2.5 °C in Bavaria, southeast Germany, in the spring seasons of 2019 and 2020 using time lapse cameras and visual ground observations. We explained SOS dates and vertical phenological (mis)match by canopy temperature and compared these to Sentinel-2 derived SOS in response to canopy temperature. We found that overstory SOS advanced with higher mean April canopy temperature (visual ground observations: −2.86 days per °C; cameras: −2.57 days per °C). However, understory SOS was not significantly affected by canopy temperature. This led to an increase of vertical phenological mismatch with increased canopy temperature (visual ground observations: +3.90 days per °C; cameras: +2.52 days per °C). These results matched Sentinel-2-derived SOS responses, as pixels of higher canopy height advanced more by increased canopy temperature than pixels of lower canopy height. The results may indicate that, with further climate change, spring phenology of F. sylvatica overstory will advance more than F. sylvatica understory, leading to increased vertical phenological mismatch in temperate deciduous forests. This may have major ecological effects, but also methodological consequences for the field of remote sensing, as what the signal senses highly depends on the pixel mean canopy height and the vertical (mis)match. KW - overstory KW - understory KW - Sentinel-2 KW - time lapse cameras KW - vertical mismatch KW - phenological escape KW - climate change KW - European beech Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-248419 SN - 2072-4292 VL - 13 IS - 19 ER - TY - JOUR A1 - Uhler, Johannes A1 - Redlich, Sarah A1 - Zhang, Jie A1 - Hothorn, Torsten A1 - Tobisch, Cynthia A1 - Ewald, Jörg A1 - Thorn, Simon A1 - Seibold, Sebastian A1 - Mitesser, Oliver A1 - Morinère, Jérôme A1 - Bozicevic, Vedran A1 - Benjamin, Caryl S. A1 - Englmeier, Jana A1 - Fricke, Ute A1 - Ganuza, Cristina A1 - Haensel, Maria A1 - Riebl, Rebekka A1 - Rojas-Botero, Sandra A1 - Rummler, Thomas A1 - Uphus, Lars A1 - Schmidt, Stefan A1 - Steffan-Dewenter, Ingolf A1 - Müller, Jörg T1 - Relationships of insect biomass and richness with land use along a climate gradient JF - Nature Communications N2 - Recently reported insect declines have raised both political and social concern. Although the declines have been attributed to land use and climate change, supporting evidence suffers from low taxonomic resolution, short time series, a focus on local scales, and the collinearity of the identified drivers. In this study, we conducted a systematic assessment of insect populations in southern Germany, which showed that differences in insect biomass and richness are highly context dependent. We found the largest difference in biomass between semi-natural and urban environments (-42%), whereas differences in total richness (-29%) and the richness of threatened species (-56%) were largest from semi-natural to agricultural environments. These results point to urbanization and agriculture as major drivers of decline. We also found that richness and biomass increase monotonously with increasing temperature, independent of habitat. The contrasting patterns of insect biomass and richness question the use of these indicators as mutual surrogates. Our study provides support for the implementation of more comprehensive measures aimed at habitat restoration in order to halt insect declines. KW - biodiversity KW - ecology Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-265058 VL - 12 IS - 1 ER - TY - JOUR A1 - Trinks, Nora A1 - Reinhard, Sebastian A1 - Drobny, Matthias A1 - Heilig, Linda A1 - Löffler, Jürgen A1 - Sauer, Markus A1 - Terpitz, Ulrich T1 - Subdiffraction-resolution fluorescence imaging of immunological synapse formation between NK cells and A. fumigatus by expansion microscopy JF - Communications Biology N2 - Expansion microscopy (ExM) enables super-resolution fluorescence imaging on standard microscopes by physical expansion of the sample. However, the investigation of interactions between different organisms such as mammalian and fungal cells by ExM remains challenging because different cell types require different expansion protocols to ensure identical, ideally isotropic expansion of both partners. Here, we introduce an ExM method that enables super-resolved visualization of the interaction between NK cells and Aspergillus fumigatus hyphae. 4-fold expansion in combination with confocal fluorescence imaging allows us to resolve details of cytoskeleton rearrangement as well as NK cells' lytic granules triggered by contact with an RFP-expressing A. fumigatus strain. In particular, subdiffraction-resolution images show polarized degranulation upon contact formation and the presence of LAMP1 surrounding perforin at the NK cell-surface post degranulation. Our data demonstrate that optimized ExM protocols enable the investigation of immunological synapse formation between two different species with so far unmatched spatial resolution. KW - biological fluorescence KW - fluorescence imaging KW - imaging the immune system KW - infectious diseases KW - super-resolution microscopy Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-264996 VL - 4 IS - 1 ER - TY - JOUR A1 - Stelzner, Kathrin A1 - Boyny, Aziza A1 - Hertlein, Tobias A1 - Sroka, Aneta A1 - Moldovan, Adriana A1 - Paprotka, Kerstin A1 - Kessie, David A1 - Mehling, Helene A1 - Potempa, Jan A1 - Ohlsen, Knut A1 - Fraunholz, Martin J. A1 - Rudel, Thomas T1 - Intracellular Staphylococcus aureus employs the cysteine protease staphopain A to induce host cell death in epithelial cells JF - PLoS Pathogens N2 - Staphylococcus aureus is a major human pathogen, which can invade and survive in non-professional and professional phagocytes. Uptake by host cells is thought to contribute to pathogenicity and persistence of the bacterium. Upon internalization by epithelial cells, cytotoxic S. aureus strains can escape from the phagosome, replicate in the cytosol and induce host cell death. Here, we identified a staphylococcal cysteine protease to induce cell death after translocation of intracellular S. aureus into the host cell cytoplasm. We demonstrated that loss of staphopain A function leads to delayed onset of host cell death and prolonged intracellular replication of S. aureus in epithelial cells. Overexpression of staphopain A in a non-cytotoxic strain facilitated intracellular killing of the host cell even in the absence of detectable intracellular replication. Moreover, staphopain A contributed to efficient colonization of the lung in a mouse pneumonia model. In phagocytic cells, where intracellular S. aureus is exclusively localized in the phagosome, staphopain A did not contribute to cytotoxicity. Our study suggests that staphopain A is utilized by S. aureus to exit the epithelial host cell and thus contributes to tissue destruction and dissemination of infection. Author summary Staphylococcus aureus is an antibiotic-resistant pathogen that emerges in hospital and community settings and can cause a variety of diseases ranging from skin abscesses to lung inflammation and blood poisoning. The bacterium can asymptomatically colonize the upper respiratory tract and skin of humans and take advantage of opportune conditions, like immunodeficiency or breached barriers, to cause infection. Although S. aureus was not regarded as intracellular bacterium, it can be internalized by human cells and subsequently exit the host cells by induction of cell death, which is considered to cause tissue destruction and spread of infection. The bacterial virulence factors and underlying molecular mechanisms involved in the intracellular lifestyle of S. aureus remain largely unknown. We identified a bacterial cysteine protease to contribute to host cell death of epithelial cells mediated by intracellular S. aureus. Staphopain A induced killing of the host cell after translocation of the pathogen into the cell cytosol, while bacterial proliferation was not required. Further, the protease enhanced survival of the pathogen during lung infection. These findings reveal a novel, intracellular role for the bacterial protease staphopain A. KW - Staphylococcus aureus KW - Staphylococcal infection KW - host cells KW - HeLa cells KW - cytotoxicity KW - intracellular pathogens KW - apoptosis KW - epithelial cells Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-263908 VL - 17 IS - 9 ER - TY - THES A1 - Staus, Madlen T1 - Glutathione-dependent reprogramming in melanoma T1 - Glutathion-abhängige Reprogrammierung im Melanom N2 - These days, treatment of melanoma patients relies on targeted therapy with BRAF/MEK inhibitors and on immunotherapy. About half of all patients initially respond to existing therapies. Nevertheless, the identification of alternative therapies for melanoma patients with intrinsic or acquired resistance is of great importance. In melanoma, antioxidants play an essential role in the maintenance of the redox homeostasis. Therefore, disruption of the redox homeostasis is regarded as highly therapeutically relevant and is the focus of the present work. An adequate supply of cysteine is essential for the production of the most important intracellular antioxidants, such as glutathione. In the present work, it was investigated whether the depletion of cysteine and glutathione is therapeutically useful. Depletion of glutathione in melanoma cells could be achieved by blocking cysteine supply, glutathione synthesis, and NADPH regeneration. As expected, this led to an increased level of reactive oxygen species (ROS). Surprisingly, however, these changes did not impair the proliferation and survival of the melanoma cells. In contrast, glutathione depletion led to cellular reprogramming which was characterized by the induction of mesenchymal genes and the repression of differentiation markers (phenotypic switch). This was accompanied by an increased migration and invasion potential which was favored by the induction of the transcription factor FOSL1. To study in vivo reprogramming, Gclc, the first and rate-limiting enzyme in glutathione synthesis, was knocked out by CRISPR/Cas9 in murine melanoma cells. The cells were devoid of glutathione, but were fully viable and showed a phenotypic switch, the latter only in MITF-expressing B16F1 cells and not in MITF-deficient D4M3A.781 cells. Following subcutaneous injection into immunocompetent C57BL/6 mice, Gclc knockout B16F1 cells grew more aggressively and resulted in an earlier tumor onset than B16F1 control cells. In summary, this work demonstrates that inhibition of cysteine supply and thus, glutathione synthesis leads to cellular reprogramming in melanoma. In this context, melanoma cells show metastatic capabilities, promoting a more aggressive form of the disease. N2 - Die Behandlung von Melanompatienten beruht heutzutage auf der gerichteten Therapie mit BRAF/MEK Inhibitoren und auf der Immuntherapie. Circa die Hälfte aller Patienten spricht zunächst auf die vorhandenen Therapien an. Dennoch ist die Identifizierung alternativer Therapieansätze für Melanompatienten mit intrinsischer oder erworbener Resistenz von großer Wichtigkeit. Im Melanom spielen Antioxidanzien eine essenzielle Rolle zur Aufrechterhaltung der Redox-Homöostase. Eine Störung der Redox-Homöostase wird daher als therapeutisch hochrelevant betrachtet und steht im Fokus der vorliegenden Arbeit. Eine ausreichende Versorgung mit Cystein ist essenziell zur Produktion der wichtigsten intrazellulären Antioxidanzien wie dem Glutathion. In der vorliegenden Arbeit wurde untersucht, ob die Depletion von Cystein und Glutathion therapeutisch nützlich ist. Eine Depletion von Glutathion in Melanomzellen konnte durch eine Blockierung der Cysteinversorgung, der Glutathionsynthese und der NADPH-Regeneration erreicht werden. Dies führte wie erwartet zu einem erhöhten Level von reaktiven Sauerstoffspezies (ROS). Überraschenderweise beeinträchtigten diese Veränderungen jedoch nicht die Proliferation und das Überleben der Melanomzellen. Im Gegenteil führte die Glutathion-Depletion zu einer zellulären Reprogrammierung, die durch die Induktion mesenchymaler Gene und der Repression von Differenzierungsmarkern gekennzeichnet war (phenotypic switch). Dies ging mit einem erhöhten Migrations- und Invasionspotential einher, welches durch die Induktion des Transkriptionsfaktors FOSL1 begünstigt wurde. Für die Untersuchung der Reprogrammierung in vivo wurde Gclc, das erste und geschwindigkeitsbestimmende Enzym der Glutathionsynthese, mittels CRISPR/Cas9 in murinen Melanomzellen ausgeknockt. Die Zellen waren voll lebensfähig und zeigten erwartungsgemäß reduzierte Glutathionlevel und einen phenotypic switch. Letzterer zeigte sich jedoch nur in MITF-exprimierenden B16F1 Zellen und nicht in MITF-defizienten D4M3A.781 Zellen. Nach subkutaner Injektion in immunkompetente C57BL/6 Mäuse wuchsen die Gclc-knockout B16F1 Zellen aggressiver und führten zu einer früheren Tumorentstehung als B16F1 Kontrollzellen. Zusammenfassend zeigt diese Arbeit, dass die Hemmung der Cysteinversorgung und somit der Glutathionmenge im Melanom zu einer Reprogrammierung führt, bei der Melanomzellen metastasierende Fähigkeiten aufweisen und somit zu einer aggressiveren Form der Erkrankung führen. KW - Melanom KW - Glutathion KW - Cystein KW - Phenotypic switch Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-168424 ER - TY - JOUR A1 - Sprenger, Philipp P. A1 - Müsse, Christian A1 - Hartke, Juliane A1 - Feldmeyer, Barbara A1 - Schmitt, Thomas A1 - Gebauer, Gerhard A1 - Menzel, Florian T1 - Dinner with the roommates: trophic niche differentiation and competition in a mutualistic ant‐ant association JF - Ecological Entomology N2 - 1. The potential for competition is highest among species in close association. Despite net benefits for both parties, mutualisms can involve costs, including food competition. This might be true for the two neotropical ants Camponotus femoratus and Crematogaster levior, which share the same nest in a presumably mutualistic association (parabiosis). 2. While each nest involves one Crematogaster and one Camponotus partner, both taxa were recently found to comprise two cryptic species that show no partner preferences and seem ecologically similar. Since these cryptic species often occur in close sympatry, they might need to partition their niches to avoid competitive exclusion. 3. Here, we investigated first, is there interference competition between parabiotic Camponotus and Crematogaster, and do they prefer different food sources under competition? And second, is there trophic niche partitioning between the cryptic species of either genus? 4. Using cafeteria experiments, neutral lipid fatty acid and stable isotope analyses, we found evidence for interference competition, but also trophic niche partitioning between Camponotus and Crematogaster. Both preferred protein‐ and carbohydrate‐rich baits, but at protein‐rich baits Ca. femoratus displaced Cr. levior over time, suggesting a potential discovery‐dominance trade‐off between parabiotic partners. Only limited evidence was found for trophic differentiation between the cryptic species of each genus. 5. Although we cannot exclude differentiation in other niche dimensions, we argue that neutral dynamics might mediate the coexistence of cryptic species. This model system is highly suitable for further studies of the maintenance of species diversity and the role of mutualisms in promoting species coexistence. KW - Cryptic species KW - Formicidae KW - neutral theory KW - niche partitioning KW - nutrition KW - parabiosis KW - species coexistence mechanism KW - trade‐offs Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-228215 VL - 46 IS - 3 SP - 562 EP - 572 ER - TY - JOUR A1 - Sponsler, Douglas B. A1 - Bratman, Eve Z. T1 - Beekeeping in, of or for the city? A socioecological perspective on urban apiculture JF - People and Nature N2 - The term ‘urban beekeeping’ connotes a host of meanings—sociopolitical, commercial, ecological and personal—beyond the mere description of where bees and beekeepers happen to coincide. Yet, these meanings are seldom articulated explicitly or brought into critical engagement with the relevant fields of urban ecology and political ecology. Beginning with a brief account of the history of urban beekeeping in the United States, we draw upon urban ecological theory to construct a conceptual model of urban beekeeping that distinguishes beekeeping in, of and for the city. In our model, beekeeping in the city describes the mere importation of the traditionally rural practice of beekeeping into urban spaces for the private reasons of the individual beekeeper, whereas beekeeping of the city describes beekeeping that is consciously tailored to the urban context, often accompanied by (semi)professionalization of beekeepers and the formation of local expert communities (i.e. beekeeping associations). Beekeeping for the city describes a shift in mindset in which beekeeping is directed to civic ends beyond the boundaries of the beekeeping community per se. Using this framework, we identify and discuss specific socioecological assets and liabilities of urban beekeeping, and how these relate to beekeeping in, of and for the city. We then formulate actionable guidelines for maturing the practice of urban beekeeping into a beneficent and self‐critical form of urban ecological citizenship; these include fostering self‐regulation within the beekeeping community, harnessing beekeeping as a ‘gateway’ experience for a broader rapprochement between urban residents and nature, and recognizing the political‐ecological context of beekeeping with respect to matters of socioecological justice. KW - environmental justice KW - honey bee KW - multispecies studies KW - policy KW - pollinator KW - urban greening Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-239949 VL - 3 IS - 3 SP - 550 EP - 559 ER - TY - THES A1 - Solger, Franziska T1 - Central role of sphingolipids on the intracellular survival of \(Neisseria\) \(gonorrhoeae\) in epithelial cells T1 - Die zentrale Rolle von Sphingolipiden auf das intrazelluläre Überleben von \(Neisseria\) \(gonorrhoeae\) in Epithelzellen N2 - Neisseria gonorrhoeae are Gram-negative bacteria with diplococcal shape. As an obligate human pathogen, it is the causative agent of gonorrhoea, a sexually transmitted disease. Gonococci colonize a variety of mucosal tissues, mainly the urogenital tract in men and women. Occasionally N. gonorrhoeae invades the bloodstream, leading to disseminated gonococcal infection. These bacteria possess a repertoire of virulence factors, which expression patterns can be adapted to the environmental conditions of the host. Through the accumulation of antibiotic resistances and in absence of vaccines, some neisserial strains have the potential to spread globally and represent a major public health threat. Therefore, it is necessary to understand the exact molecular mechanisms underlying the successful infection and progression of gonococci within their host. This deeper understanding of neisserial infection and survival mechanisms is needed for the development of new therapeutic agents. In this work, the role of host-cell sphingolipids on the intracellular survival of N. gonorrhoeae was investigated. It was shown that different classes of sphingolipids strongly interact with invasive gonococci in epithelial cells. Therefore, novel and highly specific clickable sphingolipid analogues were applied to study these interactions with this pathogen. The formation of intra- and extracellular sphingosine vesicles, which were able to target gonococci, was observed. This direct interaction led to the uptake and incorporation of sphingosine into the neisserial membrane. Together with in vitro results, sphingosine was identified as a potential bactericidal reagent as part of the host cell defence. By using different classes of sphingolipids and their clickable analogues, essential structural features, which seem to trigger the bacterial uptake, were detected. Furthermore, effects of key enzymes of the sphingolipid signalling pathway were tested in a neutrophil infection model. In conclusion, the combination of click chemistry and infection biology made it possible to shed some light on the dynamic interplay between cellular sphingosine and N. gonorrhoeae. Thereby, a possible “catch-and-kill” mechanism could have been observed. N2 - Neisseria gonorrhoeae ist ein Gram-negatives Bakterium, welches als Diplokokke vorkommt. Als ein ausschließliches Humanpathogen sind Neisserien der Erreger für die sexuell übertragbare Infektionskrankheit Gonorrhö. Gonokokken besiedeln eine Vielzahl von Schleimhäuten, jedoch hauptsächlich den Urogenitaltrakt bei Männern und Frauen. Gelegentlich kann N. gonorrhoeae in die Blutbahn invadieren, was zu einer disseminierten Infektion führen kann. Diese Bakterien verfügen über ein Repertoire an Virulenzfaktoren, deren Expressionskombination den Umgebungsbedingungen des Wirts angepasst werden können. Durch die Anhäufung von Antibiotikaresistenzen und durch das Fehlen eines Impfstoffes, besteht die Gefahr, dass spezielle Neisserienstämme sich weltweit verbreiten und daher eine ernstzunehmende Bedrohung des Menschen sind. Daher ist es notwendig die zugrundeliegenden molekularen Mechanismen der erfolgreichen Infektion und Ausbreitung der Gonokokken im Wirt genauestens zu verstehen. Das detaillierte Wissen über die Neisserieninfektion und Überlebensmechanismen ist nötig für die Entwicklung neuer Therapieansätze. In dieser Arbeit wurde der Effekt von Sphingolipiden der Wirtszelle auf das intrazelluläre Überleben von N. gonorrhoeae untersucht. Es konnte gezeigt werden, dass unterschiedliche Klassen von Sphingolipiden stark mit invasiven Gonokokken in Epithelzellen interagieren. Um dies zu tun, wurden neue und hochspezifische clickbare Sphingolipidanaloge eingesetzt, um deren Interaktionen mit diesem Pathogen zu studieren. Die Formation von intra- als auch extrazellulären Sphingosinvesikeln, welche Gonokokken gezielt erreichten, konnte beobachtet werden. Diese direkte Interaktion führte zu einer Aufnahme und Einbau des Sphingosins in die Neisserienmembran. Zusammen mit in vitro Ergebnissen, konnte Sphingosin als potenzieller und antibakterieller Bestandteil des zellulären Abwehrsystems identifiziert werden. Weiterhin wurde durch die Verwendung unterschiedlicher Sphingolipidklassen und deren clickbaren Analoge wichtige Strukturen erkannt, die die bakterielle Aufnahme auslösen. Des Weiteren wurden die Auswirkungen von Schlüsselenzymen des Sphingolipidsignalwegs in einem Infektionsmodell mit Neutrophilen getestet. Abschließend ist zu sagen, dass die Kombination aus Click Chemie und Infektionsbiologie es ermöglicht hat, die dynamischen Wechselwirkungen zwischen zellulären Sphingosin und N. gonorrhoeae zu beleuchten. Dadurch konnte ein möglicher „catch-and-kill”-Mechanismus entdeckt werden. KW - Neisseria gonorrhoeae KW - Sphingosinkinase KW - Sphingosinanaloga KW - Click-Chemie KW - sphingosine KW - sphingolipids KW - Neisseria KW - intracellular KW - vesicles Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-247534 ER - TY - JOUR A1 - Sivarajan, Rinu A1 - Kessie, David Komla A1 - Oberwinkler, Heike A1 - Pallmann, Niklas A1 - Walles, Thorsten A1 - Scherzad, Agmal A1 - Hackenberg, Stephan A1 - Steinke, Maria T1 - Susceptibility of Human Airway Tissue Models Derived From Different Anatomical Sites to Bordetella pertussis and Its Virulence Factor Adenylate Cyclase Toxin JF - Frontiers in Cellular and Infection Microbiology N2 - To study the interaction of human pathogens with their host target structures, human tissue models based on primary cells are considered suitable. Complex tissue models of the human airways have been used as infection models for various viral and bacterial pathogens. The Gram-negative bacterium Bordetella pertussis is of relevant clinical interest since whooping cough has developed into a resurgent infectious disease. In the present study, we created three-dimensional tissue models of the human ciliated nasal and tracheo-bronchial mucosa. We compared the innate immune response of these models towards the B. pertussis virulence factor adenylate cyclase toxin (CyaA) and its enzymatically inactive but fully pore-forming toxoid CyaA-AC\(^-\). Applying molecular biological, histological, and microbiological assays, we found that 1 µg/ml CyaA elevated the intracellular cAMP level but did not disturb the epithelial barrier integrity of nasal and tracheo-bronchial airway mucosa tissue models. Interestingly, CyaA significantly increased interleukin 6, interleukin 8, and human beta defensin 2 secretion in nasal tissue models, whereas tracheo-bronchial tissue models were not significantly affected compared to the controls. Subsequently, we investigated the interaction of B. pertussis with both differentiated primary nasal and tracheo-bronchial tissue models and demonstrated bacterial adherence and invasion without observing host cell type-specific significant differences. Even though the nasal and the tracheo-bronchial mucosa appear similar from a histological perspective, they are differentially susceptible to B. pertussis CyaA in vitro. Our finding that nasal tissue models showed an increased innate immune response towards the B. pertussis virulence factor CyaA compared to tracheo-bronchial tissue models may reflect the key role of the nasal airway mucosa as the first line of defense against airborne pathogens. KW - human nasal epithelial cells KW - human tracheo-bronchial epithelial cells KW - human airway mucosa tissue models KW - adenylate cyclase toxin KW - Bordetella pertussis Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-253302 SN - 2235-2988 VL - 11 ER - TY - JOUR A1 - Shityakov, Sergey A1 - Skorb, Ekaterina V. A1 - Förster, Carola Y. A1 - Dandekar, Thomas T1 - Scaffold Searching of FDA and EMA-Approved Drugs Identifies Lead Candidates for Drug Repurposing in Alzheimer’s Disease JF - Frontiers in Chemistry N2 - Clinical trials of novel therapeutics for Alzheimer’s Disease (AD) have consumed a significant amount of time and resources with largely negative results. Repurposing drugs already approved by the Food and Drug Administration (FDA), European Medicines Agency (EMA), or Worldwide for another indication is a more rapid and less expensive option. Therefore, we apply the scaffold searching approach based on known amyloid-beta (Aβ) inhibitor tramiprosate to screen the DrugCentral database (n = 4,642) of clinically tested drugs. As a result, menadione bisulfite and camphotamide substances with protrombogenic and neurostimulation/cardioprotection effects were identified as promising Aβ inhibitors with an improved binding affinity (ΔGbind) and blood-brain barrier permeation (logBB). Finally, the data was also confirmed by molecular dynamics simulations using implicit solvation, in particular as Molecular Mechanics Generalized Born Surface Area (MM-GBSA) model. Overall, the proposed in silico pipeline can be implemented through the early stage rational drug design to nominate some lead candidates for AD, which will be further validated in vitro and in vivo, and, finally, in a clinical trial. KW - scaffold search KW - approved drugs KW - drug repurposing KW - alzheimer's disease KW - chemical similarity KW - molecular modeling Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-248703 SN - 2296-2646 VL - 9 ER - TY - JOUR A1 - Seibold, Sebastian A1 - Hothorn, Torsten A1 - Gossner, Martin M. A1 - Simons, Nadja K. A1 - Blüthgen, Nico A1 - Müller, Jörg A1 - Ambarlı, Didem A1 - Ammer, Christian A1 - Bauhus, Jürgen A1 - Fischer, Markus A1 - Habel, Jan C. A1 - Penone, Caterina A1 - Schall, Peter A1 - Schulze, Ernst‐Detlef A1 - Weisser, Wolfgang W. T1 - Insights from regional and short‐term biodiversity monitoring datasets are valuable: a reply to Daskalova et al. 2021 JF - Insect Conservation and Diversity N2 - Reports of major losses in insect biodiversity have stimulated an increasing interest in temporal population changes. Existing datasets are often limited to a small number of study sites, few points in time, a narrow range of land‐use intensities and only some taxonomic groups, or they lack standardised sampling. While new monitoring programs have been initiated, they still cover rather short time periods. Daskalova et al. 2021 (Insect Conservation and Diversity, 14, 1‐18) argue that temporal trends of insect populations derived from short time series are biased towards extreme trends, while their own analysis of an assembly of shorter‐ and longer‐term time series does not support an overall insect decline. With respect to the results of Seibold et al. 2019 (Nature, 574, 671–674) based on a 10‐year multi‐site time series, they claim that the analysis suffers from not accounting for temporal pseudoreplication. Here, we explain why the criticism of missing statistical rigour in the analysis of Seibold et al. (2019) is not warranted. Models that include ‘year’ as random effect, as suggested by Daskalova et al. (2021), fail to detect non‐linear trends and assume that consecutive years are independent samples which is questionable for insect time‐series data. We agree with Daskalova et al. (2021) that the assembly and analysis of larger datasets is urgently needed, but it will take time until such datasets are available. Thus, short‐term datasets are highly valuable, should be extended and analysed continually to provide a more detailed understanding of insect population changes under the influence of global change, and to trigger immediate conservation actions. KW - Arthropod KW - biodiversity KW - insect decline KW - land use KW - time series Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-228309 VL - 14 IS - 1 SP - 144 EP - 148 ER - TY - JOUR A1 - Schuster, Sarah A1 - Lisack, Jaime A1 - Subota, Ines A1 - Zimmermann, Henriette A1 - Reuter, Christian A1 - Mueller, Tobias A1 - Morriswood, Brooke A1 - Engstler, Markus T1 - Unexpected plasiticty in the life cycle of Trypanosoma brucei JF - eLife N2 - African trypanosomes cause sleeping sickness in humans and nagana in cattle. These unicellular parasites are transmitted by the bloodsucking tsetse fly. In the mammalian host’s circulation, proliferating slender stage cells differentiate into cell cycle-arrested stumpy stage cells when they reach high population densities. This stage transition is thought to fulfil two main functions: first, it auto-regulates the parasite load in the host; second, the stumpy stage is regarded as the only stage capable of successful vector transmission. Here, we show that proliferating slender stage trypanosomes express the mRNA and protein of a known stumpy stage marker, complete the complex life cycle in the fly as successfully as the stumpy stage, and require only a single parasite for productive infection. These findings suggest a reassessment of the traditional view of the trypanosome life cycle. They may also provide a solution to a long-lasting paradox, namely the successful transmission of parasites in chronic infections, despite low parasitemia. KW - trypanosoma KW - sleeping sickness KW - tsetse fly KW - transmission KW - life cycle KW - development Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-261744 VL - 10 ER - TY - THES A1 - Schuster, Sarah T1 - Analysis of \(Trypanosoma\) \(brucei\) motility and the infection process in the tsetse fly vector T1 - Analyse der Motilität von \(Trypanosoma\) \(brucei\) und dem Infektionsprozess in der Tsetsefliege N2 - African trypanosomes are protist pathogens that are infective for a wide spectrum of mammalian hosts. Motility has been shown to be essential for their survival and represents an important virulence factor. Trypanosoma brucei is transmitted by the bite of the bloodsucking tsetse fly, the only vector for these parasites. The voyage through the fly is complex and requires several migration, proliferation and differentiation steps, which take place in a defined order and in specific fly tissues. The first part of this doctoral thesis deals with the establishment of the trypanosome tsetse system as a new model for microswimmer analysis. There is an increasing interdisciplinary interest in microbial motility, but a lack of accessible model systems. Therefore, this work introduces the first enclosed in vivo host parasite system that is suitable for analysis of diverse microswimmer types in specific microenvironments. Several methods were used and adapted to gain unprecedented insights into trypanosome motion, the fly´s interior architecture and the physical interaction between host and parasite. This work provides a detailed overview on trypanosome motile behavior as a function of development in diverse host surroundings. In additional, the potential use of artificial environments is shown. This can be used to partly abstract the complex fly architecture and analyze trypanosome motion in defined nature inspired geometries. In the second part of the thesis, the infection of the tsetse fly is under investigation. Two different trypanosome forms exist in the blood: proliferative slender cells and cell cycle arrested stumpy cells. Previous literature states that stumpy cells are pre adapted to survive inside the fly, whereas slender cells die shortly after ingestion. However, infection experiments in our laboratory showed that slender cells were also potentially infective. During this work, infections were set up so as to minimize the possibility of stumpy cells being ingested, corroborating the observation that slender cells are able to infect flies. Using live cell microscopy and fluorescent reporter cell lines, a comparative analysis of the early development following infection with either slender or stumpy cells was performed. The experiments showed, for the first time, the survival of slender trypanosomes and their direct differentiation to the procyclic midgut stage, contradicting the current view in the field of research. Therefore, we can shift perspectives in trypanosome biology by proposing a revised life cycle model of T. brucei, where both bloodstream stages are infective for the vector. N2 - Afrikanische Trypanosomen sind pathogene Protisten, die ein breites Spektrum von Säugetierwirten infizieren. Es wurde gezeigt, dass die Zellmotilität für das Überleben der Parasiten essenziell ist und einen wichtigen Virulenzfaktor darstellt. Trypanosoma brucei wird durch den Biss der blutsaugenden Tsetsefliege übertragen, dem einzigen Vektor für diese Parasiten. Der Entwicklungszyklus in der Fliege ist komplex und beinhaltet mehrere Migrations-, Proliferations- und Differenzierungsschritte, die in einer definierten Reihenfolge und in spezifischen Fliegenorganen stattfinden. Der erste Teil dieser Doktorarbeit beschäftigt sich mit der Etablierung des Trypanosomen Tsetse Systems als ein neues Modell für Motilitätsanalysen. Es besteht ein wachsendes interdisziplinäres Interesse an mikrobieller Motilität, aber es fehlen zugängliche Mikroschwimmersysteme. Deswegen stellt diese Arbeit das erste abgeschlossene in vivo Wirt Parasit System vor, das für Analysen von verschiedenen Mikroschwimmertypen in spezifischen Umgebungen geeignet ist. Verschiedene Methoden wurden benutzt und adaptiert, um sowohl Einblicke in die Trypanosomenbewegung, die innere Fliegenarchitektur als auch die physikalischen Wechselwirkungen zwischen Wirt und Parasit zu erhalten. Diese Arbeit bietet einen detaillierten Überblick über das motile Verhalten von Trypanosomen als Funktion der Entwicklung in diversen Wirtsumgebungen. Zusätzlich ist die potenzielle Nutzung von artifiziellen Umgebungen gezeigt. Diese können benutzt werden, um die komplexe Architektur der Fliege teilweise zu abstrahieren und die Trypanosomenbewegung in definierten und von der Nature inspirierten Geometrien zu analysieren. Im zweiten Teil dieser Arbeit wurde die Infektion der Fliege genauer betrachtet. Im Blut existieren zwei verschiedene Trypanosomenformen: proliferierende ‘slender’ und Zellzyklus arretierte ‘stumpy’ Zellen. Bisherige Literatur besagt, dass stumpy Zellen präadaptiert sind, um in der Fliege zu überleben, wohingegen slender Zellen kurz nach der Aufnahme sterben. Dennoch konnten Infektionsexperimente in unserem Labor zeigen, dass auch slender Zellen potenziell infektiös sind. Während dieser Arbeit wurden weitere Infektionen so durchgeführt, dass die Möglichkeit für die Aufnahme von stumpy Zellen minimiert wurde und die Infektionskapazität der slender Zellen bestätigt werden konnte. Durch Lebendzell Mikroskopie mit fluoreszenten Reporterzelllinien wurde eine vergleichende Analyse für die frühe Entwicklung von slender und stumpy Parasiten nach der Infektion durchgeführt. Die Experimente zeigten zum ersten Mal das Überleben von slender Trypanosomen in der Tsetsefliege und ihre direkte Differenzierung in das prozyklische Mitteldarmstadium. Sie widersprechen demnach der aktuellen Auffassung im Forschungsbereich. Demzufolge können wir von einem Perspektivwechsel in der Trypanosomenbiologie sprechen und schlagen einen revidierten Lebenszyklus für T. brucei vor, in dem beide Blutstromformen für den Vektor infektiös sind. KW - Motilität KW - Trypanosomen KW - Tsetsefliege KW - Parasit KW - tsetse fly KW - motility KW - trypanosome KW - vector-parasite interaction KW - microswimming Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-192691 ER - TY - JOUR A1 - Schubert, Jonathan A1 - Schulze, Andrea A1 - Prodromou, Chrisostomos A1 - Neuweiler, Hannes T1 - Two-colour single-molecule photoinduced electron transfer fluorescence imaging microscopy of chaperone dynamics JF - Nature Communications N2 - Many proteins are molecular machines, whose function is dependent on multiple conformational changes that are initiated and tightly controlled through biochemical stimuli. Their mechanistic understanding calls for spectroscopy that can probe simultaneously such structural coordinates. Here we present two-colour fluorescence microscopy in combination with photoinduced electron transfer (PET) probes as a method that simultaneously detects two structural coordinates in single protein molecules, one colour per coordinate. This contrasts with the commonly applied resonance energy transfer (FRET) technique that requires two colours per coordinate. We demonstrate the technique by directly and simultaneously observing three critical structural changes within the Hsp90 molecular chaperone machinery. Our results reveal synchronicity of conformational motions at remote sites during ATPase-driven closure of the Hsp90 molecular clamp, providing evidence for a cooperativity mechanism in the chaperone’s catalytic cycle. Single-molecule PET fluorescence microscopy opens up avenues in the multi-dimensional exploration of protein dynamics and allosteric mechanisms. KW - chaperones KW - fluorescence spectroscopy KW - molecular conformation KW - single-molecule biophysics KW - total internal reflection microscopy Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-265754 VL - 12 ER - TY - JOUR A1 - Schneider-Schaulies, Sibylle A1 - Schumacher, Fabian A1 - Wigger, Dominik A1 - Schöl, Marie A1 - Waghmare, Trushnal A1 - Schlegel, Jan A1 - Seibel, Jürgen A1 - Kleuser, Burkhard T1 - Sphingolipids: effectors and Achilles heals in viral infections? JF - Cells N2 - As viruses are obligatory intracellular parasites, any step during their life cycle strictly depends on successful interaction with their particular host cells. In particular, their interaction with cellular membranes is of crucial importance for most steps in the viral replication cycle. Such interactions are initiated by uptake of viral particles and subsequent trafficking to intracellular compartments to access their replication compartments which provide a spatially confined environment concentrating viral and cellular components, and subsequently, employ cellular membranes for assembly and exit of viral progeny. The ability of viruses to actively modulate lipid composition such as sphingolipids (SLs) is essential for successful completion of the viral life cycle. In addition to their structural and biophysical properties of cellular membranes, some sphingolipid (SL) species are bioactive and as such, take part in cellular signaling processes involved in regulating viral replication. It is especially due to the progress made in tools to study accumulation and dynamics of SLs, which visualize their compartmentalization and identify interaction partners at a cellular level, as well as the availability of genetic knockout systems, that the role of particular SL species in the viral replication process can be analyzed and, most importantly, be explored as targets for therapeutic intervention. KW - glycosphingolipids KW - ceramides KW - sphingosine 1-phosphate KW - sphingomyelinase KW - HIV KW - SARS-CoV-2 KW - measles Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-245151 SN - 2073-4409 VL - 10 IS - 9 ER - TY - JOUR A1 - Schmitz, Werner A1 - Ries, Elena A1 - Koderer, Corinna A1 - Völter, Maximilian Friedrich A1 - Wünsch, Anna Chiara A1 - El-Mesery, Mohamed A1 - Frackmann, Kyra A1 - Kübler, Alexander Christian A1 - Linz, Christian A1 - Seher, Axel T1 - Cysteine restriction in murine L929 fibroblasts as an alternative strategy to methionine restriction in cancer therapy JF - International Journal of Molecular Sciences N2 - Methionine restriction (MetR) is an efficient method of amino acid restriction (AR) in cells and organisms that induces low energy metabolism (LEM) similar to caloric restriction (CR). The implementation of MetR as a therapy for cancer or other diseases is not simple since the elimination of a single amino acid in the diet is difficult. However, the in vivo turnover rate of cysteine is usually higher than the rate of intake through food. For this reason, every cell can enzymatically synthesize cysteine from methionine, which enables the use of specific enzymatic inhibitors. In this work, we analysed the potential of cysteine restriction (CysR) in the murine cell line L929. This study determined metabolic fingerprints using mass spectrometry (LC/MS). The profiles were compared with profiles created in an earlier work under MetR. The study was supplemented by proliferation studies using D-amino acid analogues and inhibitors of intracellular cysteine synthesis. CysR showed a proliferation inhibition potential comparable to that of MetR. However, the metabolic footprints differed significantly and showed that CysR does not induce classic LEM at the metabolic level. Nevertheless, CysR offers great potential as an alternative for decisive interventions in general and tumour metabolism at the metabolic level. KW - methionine restriction KW - cysteine restriction KW - mass spectrometry KW - LC/MS KW - cancer therapy KW - caloric restriction KW - homocysteine KW - amino acid analogues KW - cysteine synthase inhibitor Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-265486 SN - 1422-0067 VL - 22 IS - 21 ER - TY - JOUR A1 - Schmitz, Werner A1 - Koderer, Corinna A1 - El-Mesery, Mohamed A1 - Gobik, Sebastian A1 - Sampers, Rene A1 - Straub, Anton A1 - Kübler, Alexander Christian A1 - Seher, Axel T1 - Metabolic fingerprinting of murine L929 fibroblasts as a cell-based tumour suppressor model system for methionine restriction JF - International Journal of Molecular Sciences N2 - Since Otto Warburg reported in 1924 that cancer cells address their increased energy requirement through a massive intake of glucose, the cellular energy level has offered a therapeutic anticancer strategy. Methionine restriction (MetR) is one of the most effective approaches for inducing low-energy metabolism (LEM) due to the central position in metabolism of this amino acid. However, no simple in vitro system for the rapid analysis of MetR is currently available, and this study establishes the murine cell line L929 as such a model system. L929 cells react rapidly and efficiently to MetR, and the analysis of more than 150 different metabolites belonging to different classes (amino acids, urea and tricarboxylic acid cycle (TCA) cycles, carbohydrates, etc.) by liquid chromatography/mass spectrometry (LC/MS) defines a metabolic fingerprint and enables the identification of specific metabolites representing normal or MetR conditions. The system facilitates the rapid and efficient testing of potential cancer therapeutic metabolic targets. To date, MS studies of MetR have been performed using organisms and yeast, and the current LC/MS analysis of the intra- and extracellular metabolites in the murine cell line L929 over a period of 5 days thus provides new insights into the effects of MetR at the cellular metabolic level. KW - methionine restriction KW - caloric restriction KW - mass spectrometry KW - LC/MS KW - liquid chromatography/mass spectrometry KW - metabolism KW - L929 KW - amino acid Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-259198 SN - 1422-0067 VL - 22 IS - 6 ER - TY - JOUR A1 - Schilcher, Felix A1 - Thamm, Markus A1 - Strube-Bloss, Martin A1 - Scheiner, Ricarda T1 - Opposing actions of octopamine and tyramine on honeybee vision JF - Biomolecules N2 - The biogenic amines octopamine and tyramine are important neurotransmitters in insects and other protostomes. They play a pivotal role in the sensory responses, learning and memory and social organisation of honeybees. Generally, octopamine and tyramine are believed to fulfil similar roles as their deuterostome counterparts epinephrine and norepinephrine. In some cases opposing functions of both amines have been observed. In this study, we examined the functions of tyramine and octopamine in honeybee responses to light. As a first step, electroretinography was used to analyse the effect of both amines on sensory sensitivity at the photoreceptor level. Here, the maximum receptor response was increased by octopamine and decreased by tyramine. As a second step, phototaxis experiments were performed to quantify the behavioural responses to light following treatment with either amine. Octopamine increased the walking speed towards different light sources while tyramine decreased it. This was independent of locomotor activity. Our results indicate that tyramine and octopamine act as functional opposites in processing responses to light. KW - biogenic amines KW - neurotransmitter KW - phototaxis KW - ERG KW - behaviour KW - modulation KW - visual system KW - octopamine KW - tyramine KW - Apis mellifera Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-246214 SN - 2218-273X VL - 11 IS - 9 ER - TY - JOUR A1 - Schilcher, Felix A1 - Hilsmann, Lioba A1 - Rauscher, Lisa A1 - Değirmenci, Laura A1 - Krischke, Markus A1 - Krischke, Beate A1 - Ankenbrand, Markus A1 - Rutschmann, Benjamin A1 - Mueller, Martin J. A1 - Steffan-Dewenter, Ingolf A1 - Scheiner, Ricarda T1 - In vitro rearing changes social task performance and physiology in honeybees JF - Insects N2 - In vitro rearing of honeybee larvae is an established method that enables exact control and monitoring of developmental factors and allows controlled application of pesticides or pathogens. However, only a few studies have investigated how the rearing method itself affects the behavior of the resulting adult honeybees. We raised honeybees in vitro according to a standardized protocol: marking the emerging honeybees individually and inserting them into established colonies. Subsequently, we investigated the behavioral performance of nurse bees and foragers and quantified the physiological factors underlying the social organization. Adult honeybees raised in vitro differed from naturally reared honeybees in their probability of performing social tasks. Further, in vitro-reared bees foraged for a shorter duration in their life and performed fewer foraging trips. Nursing behavior appeared to be unaffected by rearing condition. Weight was also unaffected by rearing condition. Interestingly, juvenile hormone titers, which normally increase strongly around the time when a honeybee becomes a forager, were significantly lower in three- and four-week-old in vitro bees. The effects of the rearing environment on individual sucrose responsiveness and lipid levels were rather minor. These data suggest that larval rearing conditions can affect the task performance and physiology of adult bees despite equal weight, pointing to an important role of the colony environment for these factors. Our observations of behavior and metabolic pathways offer important novel insight into how the rearing environment affects adult honeybees. KW - honeybee KW - artificial rearing KW - behavior KW - in vitro KW - juvenile hormone KW - triglycerides KW - PER KW - foraging KW - nursing Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-252305 SN - 2075-4450 VL - 13 IS - 1 ER - TY - JOUR A1 - Scherer, Marc A1 - Fleishman, Sarel J. A1 - Jones, Patrik R. A1 - Dandekar, Thomas A1 - Bencurova, Elena T1 - Computational Enzyme Engineering Pipelines for Optimized Production of Renewable Chemicals JF - Frontiers in Bioengineering and Biotechnology N2 - To enable a sustainable supply of chemicals, novel biotechnological solutions are required that replace the reliance on fossil resources. One potential solution is to utilize tailored biosynthetic modules for the metabolic conversion of CO2 or organic waste to chemicals and fuel by microorganisms. Currently, it is challenging to commercialize biotechnological processes for renewable chemical biomanufacturing because of a lack of highly active and specific biocatalysts. As experimental methods to engineer biocatalysts are time- and cost-intensive, it is important to establish efficient and reliable computational tools that can speed up the identification or optimization of selective, highly active, and stable enzyme variants for utilization in the biotechnological industry. Here, we review and suggest combinations of effective state-of-the-art software and online tools available for computational enzyme engineering pipelines to optimize metabolic pathways for the biosynthesis of renewable chemicals. Using examples relevant for biotechnology, we explain the underlying principles of enzyme engineering and design and illuminate future directions for automated optimization of biocatalysts for the assembly of synthetic metabolic pathways. KW - computational KW - enzyme KW - engineering KW - design KW - biomanufacturing KW - biofuel KW - microbes KW - metabolism Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-240598 SN - 2296-4185 VL - 9 ER - TY - JOUR A1 - Scheiner, Ricarda A1 - Lim, Kayun A1 - Meixner, Marina D. A1 - Gabel, Martin S. T1 - Comparing the appetitive learning performance of six European honeybee subspecies in a common apiary JF - Insects N2 - The Western honeybee (Apis mellifera L.) is one of the most widespread insects with numerous subspecies in its native range. How far adaptation to local habitats has affected the cognitive skills of the different subspecies is an intriguing question that we investigate in this study. Naturally mated queens of the following five subspecies from different parts of Europe were transferred to Southern Germany: A. m. iberiensis from Portugal, A. m. mellifera from Belgium, A. m. macedonica from Greece, A. m. ligustica from Italy, and A. m. ruttneri from Malta. We also included the local subspecies A. m. carnica in our study. New colonies were built up in a common apiary where the respective queens were introduced. Worker offspring from the different subspecies were compared in classical olfactory learning performance using the proboscis extension response. Prior to conditioning, we measured individual sucrose responsiveness to investigate whether possible differences in learning performances were due to differential responsiveness to the sugar water reward. Most subspecies did not differ in their appetitive learning performance. However, foragers of the Iberian honeybee, A. m. iberiensis, performed significantly more poorly, despite having a similar sucrose responsiveness. We discuss possible causes for the poor performance of the Iberian honeybees, which may have been shaped by adaptation to the local habitat. KW - adaptation KW - Apis mellifera KW - olfactory learning KW - proboscis extension response KW - sucrose responsiveness KW - genetic diversity Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-245180 SN - 2075-4450 VL - 12 IS - 9 ER - TY - THES A1 - Rüdenauer, Fabian T1 - Nutrition facts of pollen: nutritional quality and how it affects reception and perception in bees T1 - Nährwertinformationen von Pollen: Nährstoffzusammensetzung und wie diese sich auf Rezeption und Perzeption von Bienen auswirkt N2 - Nutrients belong to the key elements enabling life and influencing an organism’s fitness. The intake of nutrients in the right amounts and ratios can increase fitness; strong deviations from the optimal intake target can decrease fitness. Hence, the ability to assess the nutritional profile of food would benefit animals. To achieve this, they need the according nutrient receptors, the ability to interpret the receptor information via perceptive mechanisms, and the ability to adjust their foraging behavior accordingly. Additionally, eventually existing correlations between the nutrient groups and single nutrient compounds in food could help them to achieve this adjustment. A prominent interaction between food and consumer is the interaction between flowering plants (angiosperms) and animal pollinators. Usually both of the interacting partners benefit from this mutualistic interaction. Plants are pollinated while pollinators get a (most of the times) nutritional reward in form of nectar and/or pollen. As similar interactions between plants and animals seem to have existed even before the emergence of angiosperms, these interactions between insects and angiosperms very likely have co-evolved right from their evolutionary origin. Therefore, insect pollinators with the ability to assess the nutritional profile may have shaped the nutritional profile of plant species depending on them for their reproduction via selection pressure. In Chapter I of this thesis the pollen nutritional profile of many plant species was analyzed in the context of their phylogeny and their dependence on insect pollinators. In addition, correlations between the nutrients were investigated. While the impact of phylogeny on the pollen protein content was little, the mutual outcome of both of the studies included in this chapter is that protein content of pollen is mostly influenced by the plant’s dependence on insect pollinators. Several correlations found between nutrients within and between the nutrient groups could additionally help the pollinators to assess the nutrient profile of pollen. An important prerequisite for this assessment would be that the pollinators are able to differentiate between pollen of different plant species. Therefore, in Chapter II it was investigated whether bees have this ability. Specifically, it was investigated whether honeybees are able to differentiate between pollen of two different, but closely related plant species and whether bumblebees prefer one out of three pollen mixes, when they were fed with only one of them as larvae. Honeybees indeed were able to differentiate between the pollen species and bumblebees preferred one of the pollen mixes to the pollen mix they were fed as larvae, possibly due to its nutritional content. Therefore, the basis for pollen nutrient assessment is given in bees. However, there also was a slight preference for the pollen fed as larvae compared to another non-preferred pollen mix, at least hinting at the retention of larval memory in adult bumblebees. Chapter III looks into nutrient perception of bumblebees more in detail. Here it was shown that they are principally able to perceive amino acids and differentiate between them as well as different concentrations of the same amino acid. However, they do not seem to be able to assess the amino acid content in pollen or do not focus on it, but instead seem to focus on fatty acids, for which they could not only perceive concentration differences, but also were able to differentiate between. These findings were supported by feeding experiments in which the bumblebees did not prefer any of the pollen diets containing less or more amino acids but preferred pollen with less fatty acids. In no choice feeding experiments, bumblebees receiving a diet with high fatty acid content accepted undereating other nutrients instead of overeating fat, leading to increased mortality and the inability to reproduce. Hence, the importance of fat in pollen needs to be looked into further. In conclusion, this thesis shows that the co-evolution of flowering plants and pollinating insects could be even more pronounced than thought before. Insects do not only pressure the plants to produce high quality nectar, but also pressure those plants depending on insect pollination to produce high quality pollen. The reason could be the insects’ ability to receive and perceive certain nutrients, which enables them to forage selectively leading to a higher reproductive success of plants with a pollinator-suitable nutritional pollen profile. N2 - Nährstoffe gehören zu den zentralen Elementen, die das Leben an sich ermöglichen und die Fitness eines Organismus beeinflussen können. Nährstoffaufnahme in den richtigen Mengen und Verhältnissen kann die Fitness verbessern, starke Abweichungen von der optimalen Aufnahme können sie verschlechtern. Deshalb könnten Tiere von der Fähigkeit profitieren das Nährstoffprofil von Nahrung bewerten zu können. Dafür benötigten sie jedoch die passenden Nährstoffrezeptoren, die Fähigkeit die Rezeptorinformationen durch perzeptive Mechanismen zu interpretieren und ihr Sammelverhalten daran anzupassen. Eine zusätzliche Hilfe dabei könnten Korrelationen zwischen sowohl den Nährstoffgruppen als auch einzelnen Nährstoffen bieten. Eine bekannte Interaktion zwischen Nahrung und Konsument ist die zwischen Blühpflanzen (Angiospermen) und tierischen Bestäubern. Normalerweise profitieren beide Interaktionspartner von dieser mutualistischen Interaktion. Pflanzen werden bestäubt, während die Bestäuber eine (zumeist) nahrhafte Belohnung in Form von Nektar und/oder Pollen erhalten. Da ähnliche Interaktionen zwischen Pflanzen und Tieren vermutlich schon vor dem Auftreten der Angiospermen existierten, könnte sich diese Interaktion, im Speziellen mit Insekten, direkt vom evolutiven Startpunkt der Angiospermen aus koevolviert haben. Deshalb ist es möglich, dass Bestäuber mit der Fähigkeit das Nährstoffprofil von Pollen bewerten zu können, dieses bei von ihnen abhängigen Pflanzen durch Selektionsdruck formen konnten. Im Kapitel I dieser Thesis wurde das Nährstoffprofil von Pollen vieler Pflanzenarten im Kontext ihrer Phylogenie und ihrer Abhängigkeit von Insekten als Bestäubern analysiert. Außerdem wurden Korrelationen zwischen den Nährstoffen untersucht. Während die Phylogenie nur einen geringen Einfluss auf den Proteingehalt von Pollen haben könnte, ist der gemeinsame Nenner der beiden Studien in diesem Kapitel, dass der Proteingehalt des Pollens hauptsächlich von der Abhängigkeit der Pflanzen von Bestäubern bestimmt wird. Es wurden zudem einige Korrelationen sowohl in als auch zwischen den Nährstoffgruppen gefunden, die den Bestäubern helfen könnten das Nährstoffprofil von Pollen bewerten zu können. Eine wichtige Grundvoraussetzung für diese Bewertung wäre, dass die Bestäuber überhaupt dazu in der Lage sind zwischen Pollen von unterschiedlichen Pflanzenarten zu unterscheiden. Dies wird in Kapitel II behandelt, in dem untersucht wurde ob Honigbienen in der Lage sind zwischen Pollen zweier nah verwandter Pflanzenarten zu unterscheiden und ob Hummeln eine von drei Pollenmischungen bevorzugen, wenn sie nur mit einer davon als Larve in Kontakt kamen. Honigbienen war es tatsächlich möglich zwischen den Pollenarten zu unterscheiden und Hummeln bevorzugten eine bestimmte Pollenmischung gegenüber der, die sie als Larve erhalten hatten, möglicherweise aufgrund eines vorteilhaften Nährstoffprofils. Die Grundlage zur Nährstoffbewertung scheint bei Bienen also gegeben zu sein. Allerdings hatten die Hummeln auch eine leichte Präferenz für die Pollenmischung, die sie als Larve erhalten hatten gegenüber der dritten, nicht bevorzugten Pollenmischung, was zumindest darauf hindeuten könnte, dass Larvenerinnerungen bei erwachsenen Hummeln erhalten bleiben könnten. Kapitel III beschäftigt sich tiefergehend mit der Nährstoffwahrnehmung von Hummeln. Es wurde gezeigt, dass diese prinzipiell befähigt sind Aminosäuren wahrzunehmen als auch zwischen ihnen und verschiedenen Konzentrationen der gleichen Aminosäure zu unterscheiden. Allerdings scheinen sie entweder nicht in der Lage zu sein oder sich zumindest nicht darauf zu fokussieren den Aminosäuregehalt von Pollen zu bewerten, sondern sich eher auf Fettsäuren zu konzentrieren. Von diesen konnten sie nicht nur Konzentrationsunterschiede feststellen, sondern auch zwischen verschiedenen Fettsäuren im Pollen unterscheiden. Diese Ergebnisse wurden von denen in Fütterungsexperimenten gestützt, in denen die Hummeln gleiche Mengen von Pollen mit mehr oder weniger Aminosäuren aufnahmen, aber Pollen mit weniger Fettsäuren bevorzugten. In Experimenten, in denen die Hummeln keine Wahl hatten, nahmen die Hummeln mit einer Diät, die eine hohe Fettsäurekonzentration hatte, lieber in Kauf, dass sie zu wenig von den anderen Nährstoffen aufnahmen, als zu viel Fett, was zu einer erhöhten Mortalitätsrate und der Unfähigkeit sich zu reproduzieren führte. Deshalb sollten zukünftige Studien sich eingehender mit dem Fettsäuregehalt von Pollen beschäftigen. Zusammenfassend zeigt diese Thesis, dass die Koevolution von Pflanzen und bestäubenden Insekten ausgeprägter sein könnte, als bisher angenommen. Insekten setzen die Pflanzen nicht nur unter Druck qualitativ hochwertigen Nektar zu produzieren, sondern setzen vor allem auch die Pflanzen unter Druck, die von ihrer Bestäubung abhängig sind, qualitativ hochwertigen Pollen zu produzieren. Der Grund dafür könnte die Fähigkeit der Insekten sein, bestimmte Nährstoffe zu rezipieren und perzipieren und dann ihr Sammelverhalten so anzupassen, dass Pflanzen mit einem passenden Nährstoffprofil einen höheren Reproduktionserfolg haben. KW - Pollen KW - bumblebee*s KW - nutrients KW - nutrition KW - pollen KW - reception KW - perception KW - proboscis extension response KW - honeybee*s Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-212548 ER - TY - THES A1 - Röschert, Isabelle T1 - Aurora-A prevents transcription-replication conflicts in MYCN-amplified neuroblastoma T1 - Aurora-A verhindert Transkriptions-Replikationskonflikte in MYCN-amplifizierten Neuroblastomen N2 - Neuroblastoma is the most abundant, solid, extracranial tumor in early childhood and the leading cause of cancer-related childhood deaths worldwide. Patients with high-risk neuroblastoma often show MYCN-amplification and elevated levels of Aurora-A. They have a low overall survival and despite multimodal therapy options a poor therapeutic prognosis. MYCN-amplified neuroblastoma cells depend on Aurora-A functionality. Aurora-A stabilizes MYCN and prevents it from proteasomal degradation by competing with the E3 ligase SCFFBXW7. Interaction between Aurora-A and MYCN can be observed only in S phase of the cell cycle and activation of Aurora-A can be induced by MYCN in vitro. These findings suggest the existence of a profound interconnection between Aurora-A and MYCN in S phase. Nevertheless, the details remain elusive and were investigated in this study. Fractionation experiments show that Aurora-A is recruited to chromatin in S phase in a MYCN-dependent manner. Albeit being unphosphorylated on the activating T288 residue, Aurora-A kinase activity was still present in S phase and several putative, novel targets were identified by phosphoproteomic analysis. Particularly, eight phosphosites dependent on MYCN-activated Aurora-A were identified. Additionally, phosphorylation of serine 10 on histone 3 was verified as a target of this complex in S phase. ChIP-sequencing experiments reveal that Aurora-A regulates transcription elongation as well as histone H3.3 variant incorporation in S phase. 4sU-sequencing as well as immunoblotting demonstrated that Aurora-A activity impacts splicing. PLA measurements between the transcription and replication machinery revealed that Aurora-A prevents the formation of transcription-replication conflicts, which activate of kinase ATR. Aurora-A inhibitors are already used to treat neuroblastoma but display dose-limiting toxicity. To further improve Aurora-A based therapies, we investigated whether low doses of Aurora-A inhibitor combined with ATR inhibitor could increase the efficacy of the treatment albeit reducing toxicity. The study shows that the combination of both drugs leads to a reduction in cell growth as well as an increase in apoptosis in MYCN-amplified neuroblastoma cells, which is not observable in MYCN non-amplified neuroblastoma cells. This new approach was also tested by a collaboration partner in vivo resulting in a decrease in tumor burden, an increase in overall survival and a cure of 25% of TH-MYCN mice. These findings indicate indeed a therapeutic window for targeting MYCN-amplified neuroblastoma. N2 - Das Neuroblastom ist der häufigste, solide, extrakranielle Tumor der frühesten Kindheit und die häufigste mit Krebs verbundene Todesursache von Kleinkindern weltweit. Patienten mit geringerer Überlebenswahrscheinlichkeit und schlechterer Therapieprognose zeigen oft eine MYCN-Amplifikation und erhöhte Mengen von Aurora-A. Aurora-A ist eine Serin/Threonin-Protein Kinase, die wichtige mitotische Prozesse reguliert. Aurora-A stabilisiert MYCN und verhindert dadurch den proteasomalen Abbau von MYCN. Die Interaktion zwischen Aurora-A und MYCN ist S Phasen-spezifisch und MYCN ist in vitro in der Lage, durch seine Bindung Aurora-A zu aktivieren. Die Funktionen und Prozesse, die von Aurora-A in der S Phase reguliert werden, sind noch nicht hinreichend untersucht und daher Gegenstand dieser Dissertation. Zell-Fraktionierungen zeigen, dass Aurora-A in der S Phase in einer MYCN-abhängigen Weise an das Chromatin gebunden ist. Phosphoproteom-Analysen mittels Massenspektrometrie identifizierten zahlreiche neue Substrate von Aurora-A, sowie acht Substrate von MYCN-aktiviertem Aurora-A. Zusätzlich konnte gezeigt werden, dass Histon 3 Serin 10 von Aurora-A in Abhängigkeit von MYCN in S Phase phosphoryliert wird. ChIP-Sequenzierungen zeigen, dass Aurora-A die Elongation der Transkription und den Einbau der Histone Variante H3.3 in S Phase beeinflusst. 4sU-Sequenzierung sowie Immunoblots zeigen einen Zusammenhang zwischen der Aktivität von Aurora-A und dem Spleißosom in der S Phase. Zusätzlich konnte mittels PLA nachgewiesen werden, dass Aurora-A die Entstehung von Transkriptions-Replikationskonflikten verhindert, die andernfalls die Kinase ATR aktivieren würden. Aurora-A Inhibitoren wurden unter anderem zur Therapie von Neuroblastomen eingesetzt, allerdings ist die Dosis des Aurora-A Inhibitors durch die hohe Toxizität limitiert, was die Effizienz der Therapie stark beeinträchtigt. Daher wurde untersucht, ob die gleichzeitige Gabe von geringeren Mengen Aurora-A Inhibitor in Kombination mit einem ATR Inhibitor zur Therapie geeignet ist. In vitro konnte gezeigt werden, dass die Kombination beider Inhibitoren das Zellwachstum reduziert und das MYCN-amplifizierte Zellen im Vergleich zu MYCN nicht-amplifizierten Zellen verstärkt durch Apoptose sterben. Durch einen Kollaborationspartner konnte die Kombination der beiden Inhibitoren an Mäusen getestet werden. Die mit der Kombination behandelten Mäuse, zeigen ein deutlich reduziertes Tumorwachstum, sowie längeres Überleben. Somit stellt diese Kombination ein therapeutisches Fenster dar und könnte zur Behandlung von Neuroblastompatienten genutzt werden. KW - Neuroblastom KW - Aurora-A KW - MYCN KW - neuroblastoma Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-243037 ER - TY - JOUR A1 - Rother, Lisa A1 - Kraft, Nadine A1 - Smith, Dylan B. A1 - El Jundi, Basil A1 - Gill, Richard J. A1 - Pfeiffer, Keram T1 - A micro-CT-based standard brain atlas of the bumblebee JF - Cell and Tissue Research N2 - In recent years, bumblebees have become a prominent insect model organism for a variety of biological disciplines, particularly to investigate learning behaviors as well as visual performance. Understanding these behaviors and their underlying neurobiological principles requires a clear understanding of brain anatomy. Furthermore, to be able to compare neuronal branching patterns across individuals, a common framework is required, which has led to the development of 3D standard brain atlases in most of the neurobiological insect model species. Yet, no bumblebee 3D standard brain atlas has been generated. Here we present a brain atlas for the buff-tailed bumblebee Bombus terrestris using micro-computed tomography (micro-CT) scans as a source for the raw data sets, rather than traditional confocal microscopy, to produce the first ever micro-CT-based insect brain atlas. We illustrate the advantages of the micro-CT technique, namely, identical native resolution in the three cardinal planes and 3D structure being better preserved. Our Bombus terrestris brain atlas consists of 30 neuropils reconstructed from ten individual worker bees, with micro-CT allowing us to segment neuropils completely intact, including the lamina, which is a tissue structure often damaged when dissecting for immunolabeling. Our brain atlas can serve as a platform to facilitate future neuroscience studies in bumblebees and illustrates the advantages of micro-CT for specific applications in insect neuroanatomy. KW - neuropils KW - Bombus terrestris KW - insect standard brain atlas KW - iterative shape averaging KW - reconstruction Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-267783 SN - 1432-0878 VL - 386 IS - 1 ER - TY - THES A1 - Roth, Nicolas Mériadec Max André T1 - Temporal development of communities with a focus on insects, in time series of one to four decades T1 - Entwicklung von Artengemeinschaften in der Zeit mit einem Fokus auf Insekten in Zeitreihen von einer bis vier Dekaden N2 - Changes and development are fundamental principles in biocenoses and can affect a multitude of ecological processes. In insect communities phenological and density changes, changes in species richness and community composition, as well as interactions between those changes, are the most important macro processes. However, climate change and other factors like habitat degradation and loss alter these processes leading to shifts and general biodiversity declines. Even though knowledge about insect decline in central Europe increased during the last decades, there are significant knowledge gaps about the development of insect communities in certain habitats and taxa. For example, insect communities in small lentic as well as in forested habitats are under-sampled and reported to be less endangered than communities in other habitats. Furthermore, the changes within habitats and taxa are additionally influenced by certain traits, like host or feeding specialization. To disentangle these influences and to increase the knowledge about the general long-term development of insect communities, comprehensive long-term monitoring studies are needed. In addition, long-term effects of conservation strategies should also be evaluated on large time scales in order to be able to decide on a scientific base which strategies are effective in promoting possibly declining taxa. Hence, this thesis also tackles the effects of an integrative conservation strategy on wood dependent beetle and fungi, beside the development of water beetle and macro moth communities over multiple decades. In Chapter 2 I present a study on the development of water beetle communities (Dytiscidae, Haliplidae, Noteridae) in 33 water bodies in Southern Germany from 1991 to 2018. Time-standardized capture per waterbody was used during three periods: between 1991 and 1995, 2007 and 2008, and 2017 and 2018. Results showed annual declines in both species number (ca. -1%) and abundance (ca. -2%). In addition, community composition shifted over time in part due to changing pH values. Hence, the recorded changes during the 28-year study period partly reflect natural succession processes. However, since also moor-related beetle species decreased significantly, it is likely that water beetles in southern Germany are also threatened by non-successional factors, including desiccation, increased nitrogen input and/or mineralization, as well as the loss of specific habitats. The results suggest, that in small to midsize lentic waterbodies, current development should aim for constant creation of new water bodies and protection of moor waterbodies in order to protect water beetle communities on a landscape scale. In Chapter 3 I present an analysis of the development of nocturnal macro moth species richness, abundance and biomass over four decades in forests of southern Germany. Two local scale data sets featuring a coppiced oak forest as well as an oak high forest were analysed separately from a regional data set representing all forest types in the temperate zone of Central Europe. At the regional scale species richness, abundance and biomass showed annual declines of ca. 1 %, 1.3 % and 1.4 %, respectively. These declines were more pronounced in plant host specialists and in dark coloured species. In contrast, species richness increased by ca. 1.5 % annually in the coppiced forest, while no significant trends were found in the high forest. In contrast to past assumptions, insect decline apparently affects also hyper diverse insect groups in forests. Since host specialists and dark coloured species were affected more heavily by the decline than other groups, habitat loss and climate change seem to be potential drivers of the observed trends. However, the positive development of species richness in the coppiced oak forest indicates that maintaining complex and diverse forest ecosystems through active management might compensate for negative trends in biodiversity. Chapter 4 features a study specifically aiming to investigate the long-term effect of deadwood enrichment as an integrative conservation strategy on saproxylic beetles and fungi in a central European beech forest at a landscape scale. A before–after control–impact design, was used to compare assemblages and gamma diversities of saproxylic organisms (beetles and fungi) in strictly protected old-growth forest areas (reserves) and previously moderately and intensively managed forest areas. Forests were sampled one year before and a decade after starting a landscape-wide strategy of dead-wood enrichment. Ten years after the start of the dead-wood enrichment, neither gamma diversities of saproxylic organisms nor species composition of beetles did reflect the previous management types anymore. However, fungal species composition still mirrored the previous management gradient. The results demonstrated that intentional enrichment of dead wood at the landscape scale can effectively restore communities of saproxylic organisms and may thus be a suitable strategy in addition to permanent strict reserves in order to protect wood dependent organisms in Europe. In this thesis I showed, that in contrast to what was assumed and partly reported so far, also water beetles in lentic water bodies and macro moths in forests decreased in species richness, abundance and biomass during the last three to four decades. In line with earlier studies, especially dark coloured species and specialists decreased more than light-coloured species and generalists. The reasons for these declines could partly be attributed to natural processes and pollution and possibly to climate change. However, further studies, especially experimental ones, will be needed to achieve a better understanding of the reasons for insect decline. Furthermore, analyses of time series data should be interpreted cautiously especially if the number of sampling years is smaller than ten years. In addition, validation techniques such as left- and right- censoring and cross validation should be used in order to proof the robustness of the analyses. However, the lack of knowledge, we are still facing today, should not prevent scientists and practitioners from applying conservation measures. In order to prove the effectiveness of such measures, long-term monitoring is crucial. Such control of success is essential for evidence based and thus adapted conservation strategies of threatened organisms. N2 - Veränderungen und Entwicklung sind grundlegende Prinzipien in Biozönosen und können eine Vielzahl von ökologischen Prozessen beeinflussen. In Insektengemeinschaften stellen Veränderungen in der Phänologie und Dichte, Veränderungen des Artenreichtums und der Artenzusammensetzung sowie die Wechselwirkungen zwischen diesen, die wichtigsten Makroprozesse dar. Klimawandel und andere Faktoren wie der Verlust von Lebensräumen oder deren Qualitätsverschlechterung beeinflussen diese Prozesse jedoch und führen zu Veränderungen und allgemeinen Rückgängen der Biodiversität. Auch wenn die Erkenntnisse zum „Insektensterben“ in Mitteleuropa in den letzten Jahrzehnten zugenommen haben, gibt es erhebliche Wissenslücken über die Entwicklung von Insektengemeinschaften in bestimmten Lebensräumen und Taxa. Beispielsweise ist die Entwicklung von Insektengemeinschaften in kleinen, stehenden Gewässern und in Wäldern wenig erforscht. Darüber hinaus werden die Veränderungen innerhalb von Habitaten und Taxa zusätzlich durch bestimmte Merkmale, wie Wirts- oder Nahrungsspezialisierung, beeinflusst. Um diese verschiedenen Einflüsse auseinanderhalten zu können und das Wissen über die allgemeine Langzeitentwicklung von Insektengemeinschaften zu vergrößern, sind umfassende Langzeitstudien erforderlich. Darüber hinaus sollten auch die langfristigen Auswirkungen von Naturschutzstrategien über lange Zeiträume evaluiert werden, um auf wissenschaftlicher Grundlage entscheiden zu können, welche Strategien zur Förderung bedrohter Taxa wirksam sind. Daher befasst sich diese Arbeit neben der Entwicklung von Wasserkäfer- und Großschmetterlingsgemeinschaften über mehrere Jahrzehnte auch mit den Auswirkungen einer integrativen Naturschutzmaßnahme auf xylobionte Käfer und Pilze. In Kapitel 2 stelle ich eine Studie über die Entwicklung von Wasserkäfergemeinschaften (Dytiscidae, Haliplidae, Noteridae) in 33 Gewässern Süddeutschlands von 1991 bis 2018 vor. Die zeitstandardisierte Erfassung pro Wasserkörper erfolgte in drei Zeiträumen: zwischen 1991 und 1995, 2007 und 2008 sowie 2017 und 2018. Die Ergebnisse zeigten einen jährlichen Rückgang sowohl der Artenzahl (ca. -1%) als auch der Abundanz (ca. -2%). Darüber hinaus verschob sich die Artenzusammensetzung im Laufe der Zeit zum Teil aufgrund sich ändernder pH-Werte. Daraus lässt sich schlussfolgern, dass die erfassten Veränderungen während des 28- jährigen Untersuchungszeitraums teilweise natürliche Sukzessionsprozesse widerspiegeln. Da aber auch an moorige Gewässer gebundene Käferarten deutlich abgenommen haben, ist es wahrscheinlich, dass die Wasserkäfer Süddeutschlands auch durch Faktoren wie Austrocknung, erhöhten Stickstoffeintrag und/oder Mineralisierung sowie durch den Verlust spezifischer Lebensräume bedroht sind. Aufgrund dieser Entwicklungen ist es empfehlenswert, auf Landschaftsebene auf die ständige Schaffung neuer Gewässer und den besonderen Schutz von Moorgewässern zu setzen, um Wasserkäfergemeinschaften erfolgreich schützen zu können. In Kapitel 3 präsentiere ich eine Analyse der Diversitäts-, Abundanz- und Biomassenentwicklung von nachtaktiven Großschmetterlingen über vier Jahrzehnte in Wäldern Süddeutschlands. Neben einem bayernweiten Datensatz, der alle typischen Waldtypen der gemäßigten Zone Mitteleuropas beinhaltet, wurden zwei lokale, besonders regelmäßig besammelte Gebiete getrennt analysiert. In diesen Gebieten werden die Eichenwälder als Hoch- bzw. als Mittelwald bewirtschaftet. Bayernweit wiesen Artenreichtum, Abundanz und Biomasse jährliche Rückgänge von ca. 1 %, 1,3 % bzw. 1,4 % auf. Diese Rückgänge waren bei Wirtspflanzenspezialisten und bei dunkel gefärbten Arten besonders stark ausgeprägt. Im Gegensatz dazu nahm der Artenreichtum im Mittelwald jährlich um ca. 1,5 % zu, während im Hochwald keine signifikanten Trends festgestellt werden konnten. Im Gegensatz zu früheren Annahmen betrifft der Insektenrückgang offenbar auch hyperdiverse Insektengruppen im Wald. Da Wirtspflanzenspezialisten und dunkel gefärbte Arten vom Rückgang stärker betroffen waren als andere, scheinen Lebensraumverlust und Klimawandel potentielle Treiber der beobachteten Trends zu sein. Die positive Entwicklung des Artenreichtums im Mittelwald zeigt jedoch, dass der Erhalt komplexer und vielfältiger Waldökosysteme durch aktives Management, negative Biodiversitätstrends zum Teil kompensieren könnte. Kapitel 4 enthält eine Studie, die die Langzeitwirkung von Totholzanreicherung als integrative Naturschutzmaßnahme auf xylobionte Käfer und Pilze in einem mitteleuropäischen Buchenwald auf der Landschaftsebene untersucht. Dabei wurde die Gamma-Diversität und die Artenzusammensetzung dieser beiden Gruppen anhand einer Vorher-Nachher Untersuchung mit Kontrollflächen (Naturwaldreservate) untersucht. Die bewirtschafteten Flächen wurden weiterhin in zuvor mäßig und intensiv bewirtschaftete Flächen eingeteilt. Die Wälder wurden ein Jahr vor und ein Jahrzehnt nach Beginn einer Totholzanreicherungsstrategie auf Landschaftsebene beprobt. Zehn Jahre nach Beginn der Totholzanreicherung spiegelten weder die Gamma-Diversität der xylobionten Organismen noch die Artenzusammensetzung der Käfer die früheren Bewirtschaftungstypen wider, und wiesen keine Unterschiede mehr zu den Naturwaldreservaten auf. Die Pilzartenzusammensetzung spiegelte jedoch noch immer den früheren Bewirtschaftungsgradienten wider. Die Ergebnisse zeigen, dass Totholzanreicherung auf Landschaftsebene positive Effekte auf xylobionte Artengemeinschaften haben kann. Somit stellt Totholzanreicherung eine Naturschutzmaßnahme dar, die zusätzlich zu permanenten Schutzgebieten, eine Grundlage schaffen kann, um holzabhängige Organismen in Europa zu schützen. In dieser Arbeit habe ich gezeigt, dass im Gegensatz zu dem, was bisher angenommen und zum Teil berichtet wurde, auch Wasserkäfer in stehenden Gewässern und nachtaktive Großschmetterlingen in Wäldern in den letzten drei bis vier Jahrzehnten an Artenreichtum, Abundanz und Biomasse abgenommen haben. In Übereinstimmung mit anderen Studien nahmen vor allem dunkel gefärbte Arten und Spezialisten stärker ab als hell gefärbte Arten und Generalisten. Die Gründe für diese Rückgänge konnten zum Teil auf natürliche Prozesse, Umweltverschmutzung und möglicherweise auf den Klimawandel zurückgeführt werden. Es sind jedoch weitere Studien, insbesondere experimentelle, erforderlich, um die Gründe für das „Insektensterben“ besser zu verstehen. Darüber hinaus sollten Zeitreihendaten mit Vorsicht interpretiert werden, insbesondere wenn die Anzahl der besammelten Jahre kleiner als zehn Jahre ist. Darüber hinaus sollten Validierungstechniken wie Links- und Rechts-Zensierung und Kreuzvalidierung eingesetzt werden, um die Robustheit der Analysen nachzuweisen. Der Mangel an Wissen, mit dem wir heute noch konfrontiert sind, sollte Wissenschaftler und Praktiker jedoch nicht davon abhalten, Naturschutzmaßnahmen anzuwenden. Um die Wirksamkeit solcher Maßnahmen nachzuweisen, ist eine langfristige Überprüfung von entscheidender Bedeutung. Solche Erfolgskontrollen sind für evidenzbasierte und damit angepasste Erhaltungsstrategien bedrohter Organismen unerlässlich. KW - climate change KW - insects KW - temporal development KW - nature conservation KW - entomology Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-235499 ER - TY - JOUR A1 - Roth, Nicolas A1 - Hacker, Herrmann Heinrich A1 - Heidrich, Lea A1 - Friess, Nicolas A1 - García-Barroas, Enrique A1 - Habel, Jan Christian A1 - Thorn, Simon A1 - Müler, Jörg T1 - Host specificity and species colouration mediate the regional decline of nocturnal moths in central European forests JF - Ecography N2 - The high diversity of insects has limited the volume of long-term community data with a high taxonomic resolution and considerable geographic replications, especially in forests. Therefore, trends and causes of changes are poorly understood. Here we analyse trends in species richness, abundance and biomass of nocturnal macro moths in three quantitative data sets collected over four decades in forests in southern Germany. Two local data sets, one from coppiced oak forests and one from high oak forests included 125K and 48K specimens from 559 and 532 species, respectively. A third regional data set, representing all forest types in the temperate zone of central Europe comprised 735K specimens from 848 species. Generalized additive mixed models revealed temporal declines in species richness (−38%), abundance (−53%) and biomass (−57%) at the regional scale. These were more pronounced in plant host specialists and in dark coloured species. In contrast, the local coppiced oak forests showed an increase, in species richness (+62%), while the high oak forests showed no clear trends. Left and right censoring as well as cross validation confirmed the robustness of the analyses, which led to four conclusions. First, the decline in insects appears in hyper diverse insect groups in forests and affects species richness, abundance and biomass. Second, the pronounced decline in host specialists suggests habitat loss as an important driver of the observed decline. Third, the more severe decline in dark species might be an indication of global warming as a potential driver. Fourth, the trends in coppiced oak forests indicate that maintaining complex and diverse forest ecosystems through active management may be a promising conservation strategy in order to counteract negative trends in biodiversity, alongside rewilding approaches. KW - climate change KW - colour patterns KW - global change KW - Lepidoptera KW - macro moths KW - specialists KW - time series Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-258731 VL - 44 IS - 6 ER - TY - JOUR A1 - Riedmeier, Maria A1 - Decarolis, Boris A1 - Haubitz, Imme A1 - Müller, Sophie A1 - Uttinger, Konstantin A1 - Börner, Kevin A1 - Reibetanz, Joachim A1 - Wiegering, Armin A1 - Härtel, Christoph A1 - Schlegel, Paul-Gerhardt A1 - Fassnacht, Martin A1 - Wiegering, Verena T1 - Adrenocortical carcinoma in childhood: a systematic review JF - Cancers N2 - Adrenocortical tumors are rare in children. This systematic review summarizes the published evidence on pediatric adrenocortical carcinoma (ACC) to provide a basis for a better understanding of the disease, investigate new molecular biomarkers and therapeutic targets, and define which patients may benefit from a more aggressive therapeutic approach. We included 137 studies with 3680 ACC patients (~65% female) in our analysis. We found no randomized controlled trials, so this review mainly reflects retrospective data. Due to a specific mutation in the TP53 gene in ~80% of Brazilian patients, that cohort was analyzed separately from series from other countries. Hormone analysis was described in 2569 of the 2874 patients (89%). Most patients were diagnosed with localized disease, whereas 23% had metastasis at primary diagnosis. Only 72% of the patients achieved complete resection. In 334 children (23%), recurrent disease was reported: 81% — local recurrence, 19% (n = 65) — distant metastases at relapse. Patients < 4 years old had a different distribution of tumor stages and hormone activity and better overall survival (p < 0.001). Although therapeutic approaches are typically multimodal, no consensus is available on effective standard treatments for advanced ACC. Thus, knowledge regarding pediatric ACC is still scarce and international prospective studies are needed to implement standardized clinical stratifications and risk-adapted therapeutic strategies. KW - pediatric adrenocortical cancer KW - pediatric adrenocortical adenoma KW - pediatric adrenocortical tumor KW - prognostic factors KW - therapy Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-248507 SN - 2072-6694 VL - 13 IS - 21 ER - TY - JOUR A1 - Redlich, Sarah A1 - Martin, Emily A. A1 - Steffan‐Dewenter, Ingolf T1 - Sustainable landscape, soil and crop management practices enhance biodiversity and yield in conventional cereal systems JF - Journal of Applied Ecology N2 - Input‐driven, modern agriculture is commonly associated with large‐scale threats to biodiversity, the disruption of ecosystem services and long‐term risks to food security and human health. A switch to more sustainable yet highly productive farming practices seems unavoidable. However, an integrative evaluation of targeted management schemes at field and landscape scales is currently lacking. Furthermore, the often‐disproportionate influence of soil conditions and agrochemicals on yields may mask the benefits of biodiversity‐driven ecosystem services. Here, we used a real‐world ecosystem approach to identify sustainable management practices for enhanced functional biodiversity and yield on 28 temperate wheat fields. Using path analysis, we assessed direct and indirect links between soil, crop and landscape management with natural enemies and pests, as well as follow‐on effects on yield quantity and quality. A paired‐field design with a crossed insecticide‐fertilizer experiment allowed us to control for the relative influence of soil characteristics and agrochemical inputs. We demonstrate that biodiversity‐enhancing management options such as reduced tillage, crop rotation diversity and small field size can enhance natural enemies without relying on agrochemical inputs. Similarly, we show that in this system controlling pests and weeds by agrochemical means is less relevant than expected for final crop productivity. Synthesis and applications. Our study highlights soil, crop and landscape management practices that can enhance beneficial biodiversity while reducing agrochemical usage and negative environmental impacts of conventional agriculture. The diversification of cropping systems and conservation tillage are practical measures most farmers can implement without productivity losses. Combining local measures with improved landscape management may also strengthen the sustainability and resilience of cropping systems in light of future global change. KW - crop management KW - ecological intensification KW - landscape heterogeneity KW - natural enemies KW - pests KW - soil characteristics KW - sustainable intensification KW - wheat yield Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-228345 VL - 58 IS - 3 SP - 507 EP - 517 ER - TY - JOUR A1 - Rajab, Suhaila A1 - Bismin, Leah A1 - Schwarze, Simone A1 - Pinggera, Alexandra A1 - Greger, Ingo H. A1 - Neuweiler, Hannes T1 - Allosteric coupling of sub-millisecond clamshell motions in ionotropic glutamate receptor ligand-binding domains JF - Communications Biology N2 - Ionotropic glutamate receptors (iGluRs) mediate signal transmission in the brain and are important drug targets. Structural studies show snapshots of iGluRs, which provide a mechanistic understanding of gating, yet the rapid motions driving the receptor machinery are largely elusive. Here we detect kinetics of conformational change of isolated clamshell-shaped ligand-binding domains (LBDs) from the three major iGluR sub-types, which initiate gating upon binding of agonists. We design fluorescence probes to measure domain motions through nanosecond fluorescence correlation spectroscopy. We observe a broad kinetic spectrum of LBD dynamics that underlie activation of iGluRs. Microsecond clamshell motions slow upon dimerization and freeze upon binding of full and partial agonists. We uncover allosteric coupling within NMDA LBD hetero-dimers, where binding of L-glutamate to the GluN2A LBD stalls clamshell motions of the glycine-binding GluN1 LBD. Our results reveal rapid LBD dynamics across iGluRs and suggest a mechanism of negative allosteric cooperativity in NMDA receptors. KW - fluorescence spectroscopy KW - kinetics KW - ligand-gated ion channels KW - molecular neuroscience Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-261678 VL - 4 IS - 1 ER - TY - JOUR A1 - Pütz, Stephanie M. A1 - Kram, Jette A1 - Rauh, Elisa A1 - Kaiser, Sophie A1 - Toews, Romy A1 - Lueningschroer-Wang, Yi A1 - Rieger, Dirk A1 - Raabe, Thomas T1 - Loss of p21-activated kinase Mbt/PAK4 causes Parkinson-like symptoms in Drosophila JF - Disease Models & Mechanisms N2 - Parkinson's disease (PD) provokes bradykinesia, resting tremor, rigidity and postural instability, and also non-motor symptoms such as depression, anxiety, sleep and cognitive impairments. Similar phenotypes can be induced in Drosophila melanogaster through modification of PD-relevant genes or the administration of PD inducing toxins. Recent studies correlated deregulation of human p21-activated kinase 4 (PAK4) with PD, leaving open the question of a causative relationship of mutations in this gene for manifestation of PD symptoms. To determine whether flies lacking the PAK4 homolog Mushroom bodies tiny (Mbt) show PD-like phenotypes, we tested for a variety of PD criteria. Here, we demonstrate that mbt mutant flies show PD-like phenotypes including age-dependent movement deficits, reduced life expectancy and fragmented sleep. They also react to a stressful situation with higher immobility, indicating an influence of Mbt on emotional behavior. Loss of Mbt function has a negative effect on the number of dopaminergic protocerebral anterior medial (PAM) neurons, most likely caused by a proliferation defect of neural progenitors. The age-dependent movement deficits are not accompanied by a corresponding further loss of PAM neurons. Previous studies highlighted the importance of a small PAM subgroup for age-dependent PD motor impairments. We show that impaired motor skills are caused by a lack of Mbt in this PAM subgroup. In addition, a broader re-expression of Mbt in PAM neurons improves life expectancy. Conversely, selective Mbt knockout in the same cells shortens lifespan. We conclude that mutations in Mbt/PAK4 can play a causative role in the development of PD phenotypes. KW - Sleep fragmentation KW - Life expectancy KW - Emotional behavior KW - Dopaminergic PAM cluster neurons KW - Drosophila KW - Parkinson's disease KW - Mbt KW - PAK4 KW - Negative geotaxis Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-259222 VL - 14 IS - 6 ER - TY - JOUR A1 - Prieto-Garcia, Cristian A1 - Tomašković, Ines A1 - Shah, Varun Jayeshkumar A1 - Dikic, Ivan A1 - Diefenbacher, Markus T1 - USP28: oncogene or tumor suppressor? a unifying paradigm for squamous cell carcinoma JF - Cells N2 - Squamous cell carcinomas are therapeutically challenging tumor entities. Low response rates to radiotherapy and chemotherapy are commonly observed in squamous patients and, accordingly, the mortality rate is relatively high compared to other tumor entities. Recently, targeting USP28 has been emerged as a potential alternative to improve the therapeutic response and clinical outcomes of squamous patients. USP28 is a catalytically active deubiquitinase that governs a plethora of biological processes, including cellular proliferation, DNA damage repair, apoptosis and oncogenesis. In squamous cell carcinoma, USP28 is strongly expressed and stabilizes the essential squamous transcription factor ΔNp63, together with important oncogenic factors, such as NOTCH1, c-MYC and c-JUN. It is presumed that USP28 is an oncoprotein; however, recent data suggest that the deubiquitinase also has an antineoplastic effect regulating important tumor suppressor proteins, such as p53 and CHK2. In this review, we discuss: (1) The emerging role of USP28 in cancer. (2) The complexity and mutational landscape of squamous tumors. (3) The genetic alterations and cellular pathways that determine the function of USP28 in squamous cancer. (4) The development and current state of novel USP28 inhibitors. KW - USP28 KW - SCC KW - USP25 KW - FBXW7 KW - Tp63 KW - c-MYC KW - ΔNp63 KW - p53 KW - cancer KW - DUB inhibitor KW - squamous Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-248409 SN - 2073-4409 VL - 10 IS - 10 ER - TY - JOUR A1 - Peters, Simon A1 - Kaiser, Lena A1 - Fink, Julian A1 - Schumacher, Fabian A1 - Perschin, Veronika A1 - Schlegel, Jan A1 - Sauer, Markus A1 - Stigloher, Christian A1 - Kleuser, Burkhard A1 - Seibel, Juergen A1 - Schubert-Unkmeir, Alexandra T1 - Click-correlative light and electron microscopy (click-AT-CLEM) for imaging and tracking azido-functionalized sphingolipids in bacteria JF - Scientific Reports N2 - Sphingolipids, including ceramides, are a diverse group of structurally related lipids composed of a sphingoid base backbone coupled to a fatty acid side chain and modified terminal hydroxyl group. Recently, it has been shown that sphingolipids show antimicrobial activity against a broad range of pathogenic microorganisms. The antimicrobial mechanism, however, remains so far elusive. Here, we introduce 'click-AT-CLEM', a labeling technique for correlated light and electron microscopy (CLEM) based on the super-resolution array tomography (srAT) approach and bio-orthogonal click chemistry for imaging of azido-tagged sphingolipids to directly visualize their interaction with the model Gram-negative bacterium Neisseria meningitidis at subcellular level. We observed ultrastructural damage of bacteria and disruption of the bacterial outer membrane induced by two azido-modified sphingolipids by scanning electron microscopy and transmission electron microscopy. Click-AT-CLEM imaging and mass spectrometry clearly revealed efficient incorporation of azido-tagged sphingolipids into the outer membrane of Gram-negative bacteria as underlying cause of their antimicrobial activity. KW - antimicrobials KW - biological techniques KW - imaging KW - microbiology KW - microbiology techniques KW - microscopy Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-259147 VL - 11 IS - 1 ER - TY - JOUR A1 - Peixoto, Joana A1 - Janaki-Raman, Sudha A1 - Schlicker, Lisa A1 - Schmitz, Werner A1 - Walz, Susanne A1 - Winkelkotte, Alina M. A1 - Herold-Mende, Christel A1 - Soares, Paula A1 - Schulze, Almut A1 - Lima, Jorge T1 - Integrated metabolomics and transcriptomics analysis of monolayer and neurospheres from established glioblastoma cell lines JF - Cancers N2 - Altered metabolic processes contribute to carcinogenesis by modulating proliferation, survival and differentiation. Tumours are composed of different cell populations, with cancer stem-like cells being one of the most prominent examples. This specific pool of cells is thought to be responsible for cancer growth and recurrence and plays a particularly relevant role in glioblastoma (GBM), the most lethal form of primary brain tumours. Here, we have analysed the transcriptome and metabolome of an established GBM cell line (U87) and a patient-derived GBM stem-like cell line (NCH644) exposed to neurosphere or monolayer culture conditions. By integrating transcriptome and metabolome data, we identified key metabolic pathways and gene signatures that are associated with stem-like and differentiated states in GBM cells, and demonstrated that neurospheres and monolayer cells differ substantially in their metabolism and gene regulation. Furthermore, arginine biosynthesis was identified as the most significantly regulated pathway in neurospheres, although individual nodes of this pathway were distinctly regulated in the two cellular systems. Neurosphere conditions, as opposed to monolayer conditions, cause a transcriptomic and metabolic rewiring that may be crucial for the regulation of stem-like features, where arginine biosynthesis may be a key metabolic pathway. Additionally, TCGA data from GBM patients showed significant regulation of specific components of the arginine biosynthesis pathway, providing further evidence for the importance of this metabolic pathway in GBM. KW - glioblastoma KW - neurospheres KW - monolayer KW - metabolome KW - transcriptome KW - arginine metabolism Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-234110 SN - 2072-6694 VL - 13 IS - 6 ER - TY - JOUR A1 - Pauli, Martin A1 - Paul, Mila M. A1 - Proppert, Sven A1 - Mrestani, Achmed A1 - Sharifi, Marzieh A1 - Repp, Felix A1 - Kürzinger, Lydia A1 - Kollmannsberger, Philip A1 - Sauer, Markus A1 - Heckmann, Manfred A1 - Sirén, Anna-Leena T1 - Targeted volumetric single-molecule localization microscopy of defined presynaptic structures in brain sections JF - Communications Biology N2 - Revealing the molecular organization of anatomically precisely defined brain regions is necessary for refined understanding of synaptic plasticity. Although three-dimensional (3D) single-molecule localization microscopy can provide the required resolution, imaging more than a few micrometers deep into tissue remains challenging. To quantify presynaptic active zones (AZ) of entire, large, conditional detonator hippocampal mossy fiber (MF) boutons with diameters as large as 10 mu m, we developed a method for targeted volumetric direct stochastic optical reconstruction microscopy (dSTORM). An optimized protocol for fast repeated axial scanning and efficient sequential labeling of the AZ scaffold Bassoon and membrane bound GFP with Alexa Fluor 647 enabled 3D-dSTORM imaging of 25 mu m thick mouse brain sections and assignment of AZs to specific neuronal substructures. Quantitative data analysis revealed large differences in Bassoon cluster size and density for distinct hippocampal regions with largest clusters in MF boutons. Pauli et al. develop targeted volumetric dSTORM in order to image large hippocampal mossy fiber boutons (MFBs) in brain slices. They can identify synaptic targets of individual MFBs and measured size and density of Bassoon clusters within individual untruncated MFBs at nanoscopic resolution. KW - mossy fiber synapses KW - CA3 pyrimidal cells KW - CA2+ channels KW - active zone KW - hippocampal KW - release KW - plasticity KW - proteins KW - platform KW - reveals Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-259830 VL - 4 ER - TY - JOUR A1 - Panzer, Sabine A1 - Zhang, Chong A1 - Konte, Tilen A1 - Bräuer, Celine A1 - Diemar, Anne A1 - Yogendran, Parathy A1 - Yu-Strzelczyk, Jing A1 - Nagel, Georg A1 - Gao, Shiqiang A1 - Terpitz, Ulrich T1 - Modified Rhodopsins From Aureobasidium pullulans Excel With Very High Proton-Transport Rates JF - Frontiers in Molecular Biosciences N2 - Aureobasidium pullulans is a black fungus that can adapt to various stressful conditions like hypersaline, acidic, and alkaline environments. The genome of A. pullulans exhibits three genes coding for putative opsins ApOps1, ApOps2, and ApOps3. We heterologously expressed these genes in mammalian cells and Xenopus oocytes. Localization in the plasma membrane was greatly improved by introducing additional membrane trafficking signals at the N-terminus and the C-terminus. In patch-clamp and two-electrode-voltage clamp experiments, all three proteins showed proton pump activity with maximal activity in green light. Among them, ApOps2 exhibited the most pronounced proton pump activity with current amplitudes occasionally extending 10 pA/pF at 0 mV. Proton pump activity was further supported in the presence of extracellular weak organic acids. Furthermore, we used site-directed mutagenesis to reshape protein functions and thereby implemented light-gated proton channels. We discuss the difference to other well-known proton pumps and the potential of these rhodopsins for optogenetic applications. KW - black yeast KW - photoreceptor KW - microbial rhodopsins KW - optogenetics KW - proton channel KW - membrane trafficking KW - fungal rhodopsins KW - Aureobasidium Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-249248 SN - 2296-889X VL - 8 ER - TY - JOUR A1 - Othman, Eman M. A1 - Fathy, Moustafa A1 - Bekhit, Amany Abdlrehim A1 - Abdel-Razik, Abdel-Razik H. A1 - Jamal, Arshad A1 - Nazzal, Yousef A1 - Shams, Shabana A1 - Dandekar, Thomas A1 - Naseem, Muhammad T1 - Modulatory and toxicological perspectives on the effects of the small molecule kinetin JF - Molecules N2 - Plant hormones are small regulatory molecules that exert pharmacological actions in mammalian cells such as anti-oxidative and pro-metabolic effects. Kinetin belongs to the group of plant hormones cytokinin and has been associated with modulatory functions in mammalian cells. The mammalian adenosine receptor (A2a-R) is known to modulate multiple physiological responses in animal cells. Here, we describe that kinetin binds to the adenosine receptor (A2a-R) through the Asn253 residue in an adenosine dependent manner. To harness the beneficial effects of kinetin for future human use, we assess its acute toxicity by analyzing different biochemical and histological markers in rats. Kinetin at a dose below 1 mg/kg had no adverse effects on the serum level of glucose or on the activity of serum alanine transaminase (ALT) or aspartate aminotransferase (AST) enzymes in the kinetin treated rats. Whereas, creatinine levels increased after a kinetin treatment at a dose of 0.5 mg/kg. Furthermore, 5 mg/kg treated kinetin rats showed normal renal corpuscles, but a mild degeneration was observed in the renal glomeruli and renal tubules, as well as few degenerated hepatocytes were also observed in the liver. Kinetin doses below 5 mg/kg did not show any localized toxicity in the liver and kidney tissues. In addition to unraveling the binding interaction between kinetin and A2a-R, our findings suggest safe dose limits for the future use of kinetin as a therapeutic and modulatory agent against various pathophysiological conditions. KW - cytokinin kinetin KW - modulatory effects KW - in vivo toxicity KW - A2a-R receptor Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-223064 SN - 1420-3049 VL - 26 IS - 3 ER - TY - JOUR A1 - Othman, Eman M. A1 - Bekhit, Amany A. A1 - Anany, Mohamed A. A1 - Dandekar, Thomas A1 - Ragab, Hanan M. A1 - Wahid, Ahmed T1 - Design, Synthesis, and Anticancer Screening for Repurposed Pyrazolo[3,4-d]pyrimidine Derivatives on Four Mammalian Cancer Cell Lines JF - Molecules N2 - The present study reports the synthesis of new purine bioisosteres comprising a pyrazolo[3,4-d]pyrimidine scaffold linked to mono-, di-, and trimethoxy benzylidene moieties through hydrazine linkages. First, in silico docking experiments of the synthesized compounds against Bax, Bcl-2, Caspase-3, Ki67, p21, and p53 were performed in a trial to rationalize the observed cytotoxic activity for the tested compounds. The anticancer activity of these compounds was evaluated in vitro against Caco-2, A549, HT1080, and Hela cell lines. Results revealed that two (5 and 7) of the three synthesized compounds (5, 6, and 7) showed high cytotoxic activity against all tested cell lines with IC50 values in the micro molar concentration. Our in vitro results show that there is no significant apoptotic effect for the treatment with the experimental compounds on the viability of cells against A549 cells. Ki67 expression was found to decrease significantly following the treatment of cells with the most promising candidate: drug 7. The overall results indicate that these pyrazolopyrimidine derivatives possess anticancer activity at varying doses. The suggested mechanism of action involves the inhibition of the proliferation of cancer cells. KW - pyrazolo[3,4-d]pyrimidine KW - anticancer activity KW - apoptosis KW - Ki67 Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-239734 SN - 1420-3049 VL - 26 IS - 10 ER - TY - JOUR A1 - Osmanoglu, Özge A1 - Khaled AlSeiari, Mariam A1 - AlKhoori, Hasa Abduljaleel A1 - Shams, Shabana A1 - Bencurova, Elena A1 - Dandekar, Thomas A1 - Naseem, Muhammad T1 - Topological Analysis of the Carbon-Concentrating CETCH Cycle and a Photorespiratory Bypass Reveals Boosted CO\(_2\)-Sequestration by Plants JF - Frontiers in Bioengineering and Biotechnology N2 - Synthetically designed alternative photorespiratory pathways increase the biomass of tobacco and rice plants. Likewise, some in planta–tested synthetic carbon-concentrating cycles (CCCs) hold promise to increase plant biomass while diminishing atmospheric carbon dioxide burden. Taking these individual contributions into account, we hypothesize that the integration of bypasses and CCCs will further increase plant productivity. To test this in silico, we reconstructed a metabolic model by integrating photorespiration and photosynthesis with the synthetically designed alternative pathway 3 (AP3) enzymes and transporters. We calculated fluxes of the native plant system and those of AP3 combined with the inhibition of the glycolate/glycerate transporter by using the YANAsquare package. The activity values corresponding to each enzyme in photosynthesis, photorespiration, and for synthetically designed alternative pathways were estimated. Next, we modeled the effect of the crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (CETCH), which is a set of natural and synthetically designed enzymes that fix CO₂ manifold more than the native Calvin–Benson–Bassham (CBB) cycle. We compared estimated fluxes across various pathways in the native model and under an introduced CETCH cycle. Moreover, we combined CETCH and AP3-w/plgg1RNAi, and calculated the fluxes. We anticipate higher carbon dioxide–harvesting potential in plants with an AP3 bypass and CETCH–AP3 combination. We discuss the in vivo implementation of these strategies for the improvement of C3 plants and in natural high carbon harvesters. KW - CO2-sequestration KW - photorespiration KW - elementary modes KW - synthetic pathways KW - carboxylation KW - metabolic modeling KW - CETCH cycle Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-249260 SN - 2296-4185 VL - 9 ER - TY - JOUR A1 - Njovu, Henry K. A1 - Steffan-Dewenter, Ingolf A1 - Gebert, Friederike A1 - Schellenberger Costa, David A1 - Kleyer, Michael A1 - Wagner, Thomas A1 - Peters, Marcell K. T1 - Plant traits mediate the effects of climate on phytophagous beetle diversity on Mt. Kilimanjaro JF - Ecology N2 - Patterns of insect diversity along elevational gradients are well described in ecology. However, it remains little tested how variation in the quantity, quality, and diversity of food resources influence these patterns. Here we analyzed the direct and indirect effects of climate, food quantity (estimated by net primary productivity), quality (variation in the specific leaf area index, leaf nitrogen to phosphorus and leaf carbon to nitrogen ratio), and food diversity (diversity of leaf traits) on the species richness of phytophagous beetles along the broad elevation and land use gradients of Mt. Kilimanjaro, Tanzania. We sampled beetles at 65 study sites located in both natural and anthropogenic habitats, ranging from 866 to 4,550 m asl. We used path analysis to unravel the direct and indirect effects of predictor variables on species richness. In total, 3,154 phytophagous beetles representing 19 families and 304 morphospecies were collected. We found that the species richness of phytophagous beetles was bimodally distributed along the elevation gradient with peaks at the lowest (˜866 m asl) and upper mid-elevations (˜3,200 m asl) and sharply declined at higher elevations. Path analysis revealed temperature- and climate-driven changes in primary productivity and leaf trait diversity to be the best predictors of changes in the species richness of phytophagous beetles. Species richness increased with increases in mean annual temperature, primary productivity, and with increases in the diversity of leaf traits of local ecosystems. Our study demonstrates that, apart from temperature, the quantity and diversity of food resources play a major role in shaping diversity gradients of phytophagous insects. Drivers of global change, leading to a change of leaf traits and causing reductions in plant diversity and productivity, may consequently reduce the diversity of herbivore assemblages. KW - plant functional traits KW - altitudinal gradient KW - Chrysomelidae KW - Curculionidae KW - diversity gradients KW - elevation gradient KW - functional diversity KW - herbivorous beetles KW - herbivory KW - more-individuals hypothesis KW - phytophagous beetles Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-257343 VL - 102 IS - 12 ER - TY - JOUR A1 - Müller, Sophie A1 - Köhler, Franziska A1 - Hendricks, Anne A1 - Kastner, Carolin A1 - Börner, Kevin A1 - Diers, Johannes A1 - Lock, Johan F. A1 - Petritsch, Bernhard A1 - Germer, Christoph-Thomas A1 - Wiegering, Armin T1 - Brain metastases from colorectal cancer: a systematic review of the literature and meta-analysis to establish a guideline for daily treatment JF - Cancers N2 - Colorectal cancer (CRC) is the third most common malignancy worldwide. Most patients with metastatic CRC develop liver or lung metastases, while a minority suffer from brain metastases. There is little information available regarding the presentation, treatment, and overall survival of brain metastases (BM) from CRC. This systematic review and meta-analysis includes data collected from three major databases (PubMed, Cochrane, and Embase) based on the key words “brain”, “metastas*”, “tumor”, “colorectal”, “cancer”, and “malignancy”. In total, 1318 articles were identified in the search and 86 studies matched the inclusion criteria. The incidence of BM varied between 0.1% and 11.5%. Most patients developed metastases at other sites prior to developing BM. Lung metastases and KRAS mutations were described as risk factors for additional BM. Patients with BM suffered from various symptoms, but up to 96.8% of BM patients were asymptomatic at the time of BM diagnosis. Median survival time ranged from 2 to 9.6 months, and overall survival (OS) increased up to 41.1 months in patients on a multimodal therapy regimen. Several factors including age, blood levels of carcinoembryonic antigen (CEA), multiple metastases sites, number of brain lesions, and presence of the KRAS mutation were predictors of OS. For BM diagnosis, MRI was considered to be state of the art. Treatment consisted of a combination of surgery, radiation, or systemic treatment. KW - brain metastases KW - cerebral metastases KW - BM KW - colorectal cancer KW - CRC KW - systematic review KW - meta-analysis Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-228883 SN - 2072-6694 VL - 13 IS - 4 ER - TY - JOUR A1 - Mrestani, Achmed A1 - Pauli, Martin A1 - Kollmannsberger, Philip A1 - Repp, Felix A1 - Kittel, Robert J. A1 - Eilers, Jens A1 - Doose, Sören A1 - Sauer, Markus A1 - Sirén, Anna-Leena A1 - Heckmann, Manfred A1 - Paul, Mila M. T1 - Active zone compaction correlates with presynaptic homeostatic potentiation JF - Cell Reports N2 - Neurotransmitter release is stabilized by homeostatic plasticity. Presynaptic homeostatic potentiation (PHP) operates on timescales ranging from minute- to life-long adaptations and likely involves reorganization of presynaptic active zones (AZs). At Drosophila melanogaster neuromuscular junctions, earlier work ascribed AZ enlargement by incorporating more Bruchpilot (Brp) scaffold protein a role in PHP. We use localization microscopy (direct stochastic optical reconstruction microscopy [dSTORM]) and hierarchical density-based spatial clustering of applications with noise (HDBSCAN) to study AZ plasticity during PHP at the synaptic mesoscale. We find compaction of individual AZs in acute philanthotoxin-induced and chronic genetically induced PHP but unchanged copy numbers of AZ proteins. Compaction even occurs at the level of Brp subclusters, which move toward AZ centers, and in Rab3 interacting molecule (RIM)-binding protein (RBP) subclusters. Furthermore, correlative confocal and dSTORM imaging reveals how AZ compaction in PHP translates into apparent increases in AZ area and Brp protein content, as implied earlier. KW - active zone KW - Bruchpilot KW - RIM-binding protein KW - compaction KW - homeostasis KW - presynaptic plasticity KW - super-resolution microscopy Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-265497 VL - 37 IS - 1 ER - TY - JOUR A1 - Moris, Victoria C. A1 - Christmann, Katharina A1 - Wirtgen, Aline A1 - Belokobylskij, Sergey A. A1 - Berg, Alexander A1 - Liebig, Wolf-Harald A1 - Soon, Villu A1 - Baur, Hannes A1 - Schmitt, Thomas A1 - Niehuis, Oliver T1 - Cuticular hydrocarbons on old museum specimens of the spiny mason wasp, Odynerus spinipes (Hymenoptera: Vespidae: Eumeninae), shed light on the distribution and on regional frequencies of distinct chemotypes JF - Chemoecology N2 - The mason wasp Odynerus spinipes shows an exceptional case of intrasexual cuticular hydrocarbon (CHC) profile dimorphism. Females of this species display one of two CHC profiles (chemotypes) that differ qualitatively and quantitatively from each other. The ratio of the two chemotypes was previously shown to be close to 1:1 at three sites in Southern Germany, which might not be representative given the Palearctic distribution of the species. To infer the frequency of the two chemotypes across the entire distributional range of the species, we analyzed with GC–MS the CHC profile of 1042 dry-mounted specimens stored in private and museum collections. We complemented our sampling by including 324 samples collected and preserved specifically for studying their CHCs. We were capable of reliably identifying the chemotypes in 91% of dry-mounted samples, some of which collected almost 200 years ago. We found both chemotypes to occur in the Far East, the presumed glacial refuge of the species, and their frequency to differ considerably between sites and geographic regions. The geographic structure in the chemotype frequencies could be the result of differential selection regimes and/or different dispersal routes during the colonization of the Western Palearctic. The presented data pave the route for disentangling these factors by providing information where to geographically sample O. spinipes for population genetic analyses. They also form the much-needed basis for future studies aiming to understand the evolutionary and geographic origin as well as the genetics of the astounding CHC profile dimorphism that O. spinipes females exhibit. KW - cuticular hydrocarbons KW - chemotypes KW - dry-mounted samples KW - collections KW - distribution Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-306999 SN - 0937-7409 SN - 1423-0445 VL - 31 IS - 5 ER - TY - JOUR A1 - Meir, Michael A1 - Kannapin, Felix A1 - Diefenbacher, Markus A1 - Ghoreishi, Yalda A1 - Kollmann, Catherine A1 - Flemming, Sven A1 - Germer, Christoph-Thomas A1 - Waschke, Jens A1 - Leven, Patrick A1 - Schneider, Reiner A1 - Wehner, Sven A1 - Burkard, Natalie A1 - Schlegel, Nicolas T1 - Intestinal epithelial barrier maturation by enteric glial cells is GDNF-dependent JF - International Journal of Molecular Sciences N2 - Enteric glial cells (EGCs) of the enteric nervous system are critically involved in the maintenance of intestinal epithelial barrier function (IEB). The underlying mechanisms remain undefined. Glial cell line-derived neurotrophic factor (GDNF) contributes to IEB maturation and may therefore be the predominant mediator of this process by EGCs. Using GFAP\(^{cre}\) x Ai14\(^{floxed}\) mice to isolate EGCs by Fluorescence-activated cell sorting (FACS), we confirmed that they synthesize GDNF in vivo as well as in primary cultures demonstrating that EGCs are a rich source of GDNF in vivo and in vitro. Co-culture of EGCs with Caco2 cells resulted in IEB maturation which was abrogated when GDNF was either depleted from EGC supernatants, or knocked down in EGCs or when the GDNF receptor RET was blocked. Further, TNFα-induced loss of IEB function in Caco2 cells and in organoids was attenuated by EGC supernatants or by recombinant GDNF. These barrier-protective effects were blunted when using supernatants from GDNF-deficient EGCs or by RET receptor blockade. Together, our data show that EGCs produce GDNF to maintain IEB function in vitro through the RET receptor. KW - enteric glial cells KW - neurotrophic factors KW - intestinal epithelial barrier KW - GDNF5 KW - RET6 KW - inflammatory bowel disease KW - enteric nervous system KW - gut barrier KW - intercellular junctions Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-258913 SN - 1422-0067 VL - 22 IS - 4 ER - TY - THES A1 - Mayr, Antonia Veronika T1 - Following Bees and Wasps up Mt. Kilimanjaro: From Diversity and Traits to hidden Interactions of Species T1 - Auf den Spuren von Bienen und Wespen auf den Kilimandscharo: Eine Studie über die Diversität, Merkmale und verborgenen Wechselwirkungen zwischen Arten N2 - Chapter 1 – General Introduction One of the greatest challenges of ecological research is to predict the response of ecosystems to global change; that is to changes in climate and land use. A complex question in this context is how changing environmental conditions affect ecosystem processes at different levels of communities. To shed light on this issue, I investigate drivers of biodiversity on the level of species richness, functional traits and species interactions in cavity-nesting Hymenoptera. For this purpose, I take advantage of the steep elevational gradient of Mt. Kilimanjaro that shows strong environmental changes on a relatively small spatial scale and thus, provides a good environmental scenario for investigating drivers of diversity. In this thesis, I focus on 1) drivers of species richness at different trophic levels (Chapter 2); 2) seasonal patterns in nest-building activity, life-history traits and ecological rates in three different functional groups and at different elevations (Chapter 3) and 3) changes in cuticular hydrocarbons, pollen composition and microbiomes in Lasioglossum bees caused by climatic variables (Chapter 4). Chapter 2 – Climate and food resources shape species richness and trophic interactions of cavity-nesting Hymenoptera Drivers of species richness have been subject to research for centuries. Temperature, resource availability and top-down regulation as well as the impact of land use are considered to be important factors in determining insect diversity. Yet, the relative importance of each of these factors is unknown. Using trap nests along the elevational gradient of Mt. Kilimanjaro, we tried to disentangle drivers of species richness at different trophic levels. Temperature was the major driver of species richness across trophic levels, with increasing importance of food resources at higher trophic levels in natural antagonists. Parasitism rate was both related to temperature and trophic level, indicating that the relative importance of bottom-up and top-down forces might shift with climate change. Chapter 3 – Seasonal variation in the ecology of tropical cavity-nesting Hymenoptera Natural populations fluctuate with the availability of resources, presence of natural enemies and climatic variations. But tropical mountain seasonality is not yet well investigated. We investigated seasonal patterns in nest-building activity, functional traits and ecological rates in three different insect groups at lower and higher elevations separately. Insects were caught with trap nests which were checked monthly during a 17 months period that included three dry and three rainy seasons. Insects were grouped according to their functional guilds. All groups showed strong seasonality in nest-building activity which was higher and more synchronised among groups at lower elevations. Seasonality in nest building activity of caterpillar-hunting and spider-hunting wasps was linked to climate seasonality while in bees it was strongly linked to the availability of flowers, as well as for the survival rate and sex ratio of bees. Finding adaptations to environmental seasonality might imply that further changes in climatic seasonality by climate change could have an influence on life-history traits of tropical mountain species. Chapter 4 – Cryptic species and hidden ecological interactions of halictine bees along an elevational Gradient Strong environmental gradients such as those occurring along mountain slopes are challenging for species. In this context, hidden adaptations or interactions have rarely been considered. We used bees of the genus Lasioglossum as model organisms because Lasioglossum is the only bee genus occurring with a distribution across the entire elevational gradient at Mt. Kilimanjaro. We asked if and how (a) cuticular hydrocarbons (CHC), which act as a desiccation barrier, change in composition and chain length along with changes in temperature and humidity (b), Lasioglossum bees change their pollen diet with changing resource availability, (c) gut microbiota change with pollen diet and climatic conditions, and surface microbiota change with CHC and climatic conditions, respectively, and if changes are rather influenced by turnover in Lasioglossum species along the elevational gradient. We found physiological adaptations with climate in CHC as well as changes in communities with regard to pollen diet and microbiota, which also correlated with each other. These results suggest that complex interactions and feedbacks among abiotic and biotic conditions determine the species composition in a community. Chapter 5 – General Discussion Abiotic and biotic factors drove species diversity, traits and interactions and they worked differently depending on the functional group that has been studied, and whether spatial or temporal units were considered. It is therefore likely, that in the light of global change, different species, traits and interactions will be affected differently. Furthermore, increasing land use intensity could have additional or interacting effects with climate change on biodiversity, even though the potential land-use effects at Mt. Kilimanjaro are still low and not impairing cavity-nesting Hymenoptera so far. Further studies should address species networks which might reveal more sensitive changes. For that purpose, trap nests provide a good model system to investigate effects of global change on multiple trophic levels and may also reveal direct effects of climate change on entire life-history traits when established under different microclimatic conditions. The non-uniform effects of abiotic and biotic conditions on multiple aspects of biodiversity revealed with this study also highlight that evaluating different aspects of biodiversity can give a more comprehensive picture than single observations. N2 - Kapitel 1 – Allgemeine Einführung Eine der größten Herausforderungen der ökologischen Forschung ist es, die Reaktion der Ökosysteme auf den globalen Wandel, d.h. auf Veränderungen von Klima und Landnutzung, vorherzusagen. Eine komplexe Frage in diesem Zusammenhang ist, wie sich verändernde Umweltbedingungen auf die Ökosystemprozesse auf verschiedenen Ebenen von Gemeinschaften auswirken. Um dieses Thema näher zu beleuchten, untersuche ich die Triebkräfte der Biodiversität auf der Ebene des Artenreichtums, der funktionellen Eigenschaften und der Wechselwirkungen zwischen Arten bei Hautflüglern, die in Hohlräumen nisten. Zu diesem Zweck nutze ich den steilen Höhengradienten des Kilimandscharo, der starke Umweltveränderungen auf relativ kleinem Raum mit sich bringt und somit ein gutes System für die Untersuchung von Triebkräften der biologischen Vielfalt bietet. In dieser Arbeit konzentriere ich mich auf 1) Triebkräfte des Artenreichtums auf verschiedenen trophischen Ebenen (Kapitel 2); 2) saisonale Muster in der Nestbauaktivität, lebensgeschichtliche Merkmale und ökologische Raten in drei verschiedenen funktionellen Gruppen und in verschiedenen Höhenlagen (Kapitel 3) und 3) Veränderungen in kutikulären Kohlenwasserstoffen, Pollenzusammensetzung und Mikrobiomen bei Lasioglossum Bienen, die durch klimatische Faktoren verursacht werden (Kapitel 4). Kapitel 2 – Klima und Nahrungsressourcen prägen den Artenreichtum und die trophischen Wechselwirkungen von hohlraumnistenden Hautflüglern Die Triebkräfte des Artenreichtums werden seit Jahrhunderten erforscht. Temperatur, Ressourcenverfügbarkeit und Top-Down-Regulierung sowie die Auswirkungen der Landnutzung werden als wichtige Faktoren für die Bestimmung der Insektenvielfalt angesehen. Die relative Bedeutung jedes dieser Faktoren ist jedoch unbekannt. Mit Hilfe von Nisthilfen entlang des Höhengradienten des Kilimandscharo versuchten wir, die Triebkräfte des Artenreichtums auf verschiedenen trophischen Ebenen zu enträtseln. Die Temperatur war der Hauptfaktor für den Artenreichtum auf allen trophischen Ebenen, wobei die Bedeutung der Nahrungsressourcen auf den höheren trophischen Ebenen der natürlichen Antagonisten zunahm. Die Parasitierungsrate wurde sowohl durch die Temperatur als auch durch die trophische Ebene bestimmt, was darauf hindeutet, dass sich die relative Bedeutung der Bottom-up- und Top-down-Kräfte mit dem Klimawandel verschieben könnte. Kapitel 3 – Saisonale Schwankungen in der Ökologie von tropischen hohlraumnistenden Hautflüglern Natürliche Populationen schwanken mit der Verfügbarkeit von Ressourcen, dem Vorhandensein natürlicher Feinde und klimatischen Schwankungen. Die Saisonalität ist jedoch auf tropischen Bergen noch nicht gut untersucht. Wir untersuchten saisonale Muster in der Nestbauaktivität, funktionale Merkmale und ökologische Raten bei drei verschiedenen Insektengruppen in niedrigeren und höheren Höhenlagen. Insekten wurden mit Nisthilfen gefangen, die während eines Zeitraums von 17 Monaten, der drei Trocken- und drei Regenzeiten umfasste, monatlich überprüft wurden. Die Insekten wurden nach ihren funktionalen Gilden eingeteilt. Alle Gruppen zeigten eine starke Saisonalität im Nestbau, die in niedrigeren Lagen höher war und dort zwischen den Gruppen stärker synchronisiert war. Die Saisonalität im Nestbau von Raupen- und Spinnen- jagenden Wespen war mit saisonalen Klimaschwankungen verbunden, während sie bei Bienen stark von der Verfügbarkeit von Blüten abhing, genauso wie die Überlebensrate und das Geschlechterverhältnis der Bienen von der Blütenmenge abhing. Die Anpassung an die Saisonalität der Umwelt könnte bedeuten, dass weitere Veränderungen der saisonalen Klimaschwankungen durch den Klimawandel einen Einfluss auf die lebensgeschichtlichen Merkmale tropischer Bergarten haben könnten. Kapitel 4 – Kryptische Arten und versteckte ökologische Wechselwirkungen bei Schmalbienen entlang eines Höhengradienten Starke Umweltgradienten, wie sie an Berghängen auftreten, stellen für Arten eine Herausforderung dar. Versteckte Anpassungen oder Interaktionen wurden in diesem Zusammenhang selten berücksichtigt. Als Modellorganismen haben wir Bienen der Gattung Lasioglossum verwendet, da Lasioglossum die einzige Bienengattung ist, die über den gesamten Höhengradienten am Kilimandscharo weit verbreitet ist. Wir fragten, ob und wie (a) kutikuläre Kohlenwasserstoffe (CHC), die als Barriere gegen Austrocknung wirken, sich in ihrer Zusammensetzung und Kettenlänge entlang von Temperatur- und Feuchtigkeitsänderungen verändern; (b) Lasioglossum Bienen ihre Pollennahrung mit wechselnder Ressourcenverfügbarkeit ändern; (c) Änderungen von Darm-Mikrobiota mit Pollennahrung und Klimabedingungen und Änderungen von Oberflächen-Mikrobiota mit CHC und Klimabedingungen zusammen hängen, und ob die Veränderungen eher durch den Wechsel von Lasioglossum Arten entlang des Höhengradienten beeinflusst werden. Wir fanden physiologische Anpassungen an das Klima in CHC, sowie Veränderungen in der Zusammensetzung von Pollennahrung und Mikrobiota, die auch miteinander korrelierten. Diese Ergebnisse deuten darauf hin, dass komplexe Wechselwirkungen und Rückkopplungen zwischen abiotischen und biotischen Bedingungen die Artenzusammensetzung in einer Gemeinschaft bestimmen. Kapitel 5 – Allgemeine Diskussion Abiotische und biotische Faktoren förderten die Artenvielfalt, Eigenschaften und Wechselwirkungen von Arten und sie wirkten unterschiedlich, je nachdem, welche funktionelle Gruppe untersucht wurde und ob räumliche oder zeitliche Einheiten berücksichtigt worden sind. Es ist daher wahrscheinlich, dass im Lichte des globalen Wandels verschiedene Arten, Merkmale und Wechselwirkungen unterschiedlich betroffen sein werden. Darüber hinaus könnte eine zunehmende Landnutzungsintensität zusätzliche Auswirkungen oder Wechselwirkungen mit dem Klimawandel auf die Biodiversität haben, auch wenn die potenziellen Landnutzungseffekte am Kilimandscharo noch gering sind und bis jetzt die hohlraumnistenden Hautflüglern nicht beeinträchtigen. Weitere Studien sollten sich mit Nahrungsnetzwerken befassen, die empfindlichere Veränderungen aufzeigen könnten. Nisthilfen bieten dafür ein gutes Modellsystem, um die Auswirkungen des globalen Wandels auf mehreren trophischen Ebenen zu untersuchen, und können auch direkte Auswirkungen des Klimawandels auf ganze lebensgeschichtliche Merkmale aufzeigen, wenn sie unter verschiedenen mikroklimatischen Bedingungen etabliert werden. Die nicht einheitlichen Auswirkungen abiotischer und biotischer Bedingungen auf mehrere Aspekte der Biodiversität, die in dieser Studie gezeigt wurden, zeigen auch, dass die Untersuchung verschiedener Aspekte der Biodiversität ein umfassenderes Bild vermitteln kann als Einzelbetrachtungen. KW - land use KW - Landnutzung KW - climate change KW - bees KW - wasps KW - biodiversity KW - Klimawandel KW - Bienen KW - Wespen KW - Biodiversität Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-182922 ER - TY - JOUR A1 - Mayr, Antonia V. A1 - Keller, Alexander A1 - Peters, Marcell K. A1 - Grimmer, Gudrun A1 - Krischke, Beate A1 - Geyer, Mareen A1 - Schmitt, Thomas A1 - Steffan‐Dewenter, Ingolf T1 - Cryptic species and hidden ecological interactions of halictine bees along an elevational gradient JF - Ecology and Evolution N2 - Changes of abiotic and biotic conditions along elevational gradients represent serious challenges to organisms which may promote the turnover of species, traits and biotic interaction partners. Here, we used molecular methods to study cuticular hydrocarbon (CHC) profiles, biotic interactions and phylogenetic relationships of halictid bees of the genus Lasioglossum along a 2,900 m elevational gradient at Mt. Kilimanjaro, Tanzania. We detected a strong species turnover of morphologically indistinguishable taxa with phylogenetically clustered cryptic species at high elevations, changes in CHC profiles, pollen resource diversity, and a turnover in the gut and body surface microbiome of bees. At high elevations, increased proportions of saturated compounds in CHC profiles indicate physiological adaptations to prevent desiccation. More specialized diets with higher proportions of low‐quality Asteraceae pollen imply constraints in the availability of food resources. Interactive effects of climatic conditions on gut and surface microbiomes, CHC profiles, and pollen diet suggest complex feedbacks among abiotic conditions, ecological interactions, physiological adaptations, and phylogenetic constraints as drivers of halictid bee communities at Mt. Kilimanjaro. KW - COI KW - cuticular chemistry KW - elevational gradient KW - Halictidae KW - microbiome metabarcoding KW - pollen metabarcoding Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-238853 VL - 11 IS - 12 SP - 7700 EP - 7712 ER - TY - JOUR A1 - Martín, Ovidio Jiménez A1 - Schlosser, Andreas A1 - Furtwängler, Rhoikos A1 - Wegert, Jenny A1 - Gessler, Manfred T1 - MYCN and MAX alterations in Wilms tumor and identification of novel N-MYC interaction partners as biomarker candidates JF - Cancer Cell International N2 - Background Wilms tumor (WT) is the most common renal tumor in childhood. Among others, MYCN copy number gain and MYCN P44L and MAX R60Q mutations have been identified in WT. MYCN encodes a transcription factor that requires dimerization with MAX to activate transcription of numerous target genes. MYCN gain has been associated with adverse prognosis in different childhood tumors including WT. The MYCN P44L and MAX R60Q mutations, located in either the transactivating or basic helix-loop-helix domain, respectively, are predicted to be damaging by different pathogenicity prediction tools, but the functional consequences remain to be characterized. Methods We screened a large cohort of unselected WTs for MYCN and MAX alterations. Wild-type and mutant protein function were characterized biochemically, and we analyzed the N-MYC protein interactome by mass spectrometric analysis of N-MYC containing protein complexes. Results Mutation screening revealed mutation frequencies of 3% for MYCN P44L and 0.9% for MAX R60Q that are associated with a higher risk of relapse. Biochemical characterization identified a reduced transcriptional activation potential for MAX R60Q, while the MYCN P44L mutation did not change activation potential or protein stability. The protein interactome of N-MYC-P44L was likewise not altered as shown by mass spectrometric analyses of purified N-MYC complexes. Nevertheless, we could identify a number of novel N-MYC partner proteins, e.g. PEG10, YEATS2, FOXK1, CBLL1 and MCRS1, whose expression is correlated with MYCN in WT samples and several of these are known for their own oncogenic potential. Conclusions The strongly elevated risk of relapse associated with mutant MYCN and MAX or elevated MYCN expression corroborates their role in WT oncogenesis. Together with the newly identified co-expressed interactors they expand the range of potential biomarkers for WT stratification and targeting, especially for high-risk WT. KW - Wilms tumor KW - MYCN KW - MAX KW - interactome KW - mutation screening Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-265542 VL - 21 ER - TY - THES A1 - Markert, Sebastian Matthias T1 - Enriching the understanding of synaptic architecture from single synapses to networks with advanced imaging techniques T1 - Vertiefung des Verständnisses synaptischer Architektur von der einzelnen Synapse bis zum Netzwerk mit modernsten bildgebenden Verfahren N2 - Because of its complexity and intricacy, studying the nervous system is often challenging. Fortunately, the small nematode roundworm Caenorhabditis elegans is well established as a model system for basic neurobiological research. The C. elegans model is also the only organism with a supposedly complete connectome, an organism-wide map of synaptic connectivity resolved by electron microscopy, which provides some understanding of how the nervous system works as a whole. However, the number of available data-sets is small and the connectome contains errors and gaps. One example of this concerns electrical synapses. Electrical synapses are formed by gap junctions and difficult to map due to their often ambiguous morphology in electron micrographs, leading to misclassification or omission. On the other hand, chemical synapses are more easily mapped, but many aspects of their mode of operation remain elusive and their role in the C. elegans connectome is oversimplified. A comprehensive understanding of signal transduction of neurons between each other and other cells will be indispensable for a comprehensive understanding of the nervous system. In this thesis, I approach these challenges with a combination of advanced light and electron microscopy techniques. First, this thesis describes a strategy to increase synaptic specificity in connectomics. Specifically, I classify gap junctions with a high degree of confidence. To achieve this, I utilized array tomography (AT). In this thesis, AT is adapted for high-pressure freezing to optimize for structure preservation and for super-resolution light microscopy; in this manner, I aim to bridge the gap between light and electron microscopy resolutions. I call this adaptation super-resolution array tomography (srAT). The srAT approach made it possible to clearly identify and map gap junctions with high precision and accuracy. The results from this study showcased the feasibility of incorporating electrical synapses into connectomes in a systematic manner, and subsequent studies have used srAT for other models and questions. As mentioned above, the C. elegans connectomic model suffers from a shortage of datasets. For most larval stages, including the special dauer larval stage, connectome data is completely missing up to now. To obtain the first partial connectome data-set of the C. elegans dauer larva, we used focused ion-beam scanning electron microscopy (FIB-SEM). This technique offers an excellent axial resolution and is useful for acquiring large volumes for connectomics. Together with our collaborators, I acquired several data-sets which enable the analysis of dauer stage-specific “re-wiring” of the nervous system and thus offer valuable insights into connectome plasticity/variability. While chemical synapses are easy to map relative to electrical synapses, signal transduction via chemical transmitters requires a large number of different proteins and molecular processes acting in conjunction in a highly constricted space. Because of the small spatial scale of the synapse, investigating protein function requires very high resolution, which electron tomography provides. I analyzed electron tomograms of a worm-line with a mutant synaptic protein, the serine/threonine kinase SAD-1, and found remarkable alterations in several architectural features. My results confirm and re-contextualize previous findings and provide new insight into the functions of this protein at the chemical synapse. Finally, I investigated the effectiveness of our methods on “malfunctioning,” synapses, using an amyotrophic lateral sclerosis (ALS) model. In the putative synaptopathy ALS, the mechanisms of motor neuron death are mostly unknown. However, mutations in the gene FUS (Fused in Sarcoma) are one known cause of the disease. The expression of the mutated human FUS in C. elegans was recently shown to produce an ALS-like phenotype in the worms, rendering C. elegans an attractive disease model for ALS. Together with our collaboration partners, I applied both srAT and electron tomography methods to “ALS worms” and found effects on vesicle docking. These findings help to explain electrophysiological recordings that revealed a decrease in frequency of mini excitatory synaptic currents, but not amplitudes, in ALS worms compared to controls. In addition, synaptic endosomes appeared larger and contained electron-dense filaments in our tomograms. These results substantiate the idea that mutated FUS impairs vesicle docking and also offer new insights into further molecular mechanisms of disease development in FUS-dependent ALS. Furthermore, we demonstrated the broader applicability of our methods by successfully using them on cultured mouse motor neurons. Overall, using the C. elegans model and a combination of light and electron microscopy methods, this thesis helps to elucidate the structure and function of neuronal synapses, towards the aim of obtaining a comprehensive model of the nervous system. N2 - Das Nervensystem ist ein definierendes Merkmal aller Tiere, unter anderem verantwortlich für Sinneswahrnehmung, Bewegung und „höhere“ Hirnfunktionen. Wegen dessen Komplexität und Feingliedrigkeit stellt das Erforschen des Nervensystems oft eine Herausforderung dar. Jedoch ist der kleine Fadenwurm Caenorhabditis elegans als Modellsystem für neurobiologische Grundlagenforschung gut etabliert. Erbesitzt eines der kleinsten und unveränderlichsten bekannten Nervensysteme. C.elegans ist auch das einzige Modell, für das ein annähernd vollständiges Konnektom vorliegt, eine durch Elektronenmikroskopie erstellte Karte der synaptischen Verbindungen eines gesamten Organismus, die Einblicke in die Funktionsweise des Nervensystems als Ganzes erlaubt. Allerdings ist die Anzahl der verfügbaren Datensätze gering und das Konnektom enthält Fehler und Lücken. Davon sind beispielsweise elektrische Synapsen betroffen. Elektrische Synapsen werden von Gap Junctions gebildet und sind auf Grund ihrer oft uneindeutigen Morphologie in elektronenmikroskopischen Aufnahmen schwierig zu kartieren, was dazu führt, dass einige falsch klassifiziert oder übersehen werden. Chemische Synapsen sind dagegen einfacher zu kartieren, aber viele Aspekte ihrer Funktionsweise sind schwer zu erfassen und ihre Rolle im Konnektom von C.elegans ist daher zu vereinfacht dargestellt. Ein umfassendes Verständnis der Signaltransduktion von Neuronen untereinander und zu anderen Zellen wird Voraussetzung für ein vollständiges Erfassen des Nervensystems sein. In der vorliegenden Arbeit gehe ich diese Herausforderungen mithilfe einer Kombination aus modernsten licht- und elektronenmikroskopischen Verfahren an. Zunächst beschreibt diese Arbeit eine Strategie, um die synaptische Spezifität in der Konnektomik zu erhöhen, indem ich Gap Junctions mit einem hohen Maß an Genauigkeit klassifiziere. Um dies zu erreichen, nutzte ich array tomography (AT), eine Technik, die Licht- und Elektronenmikrokopie miteinander korreliert. In dieser Arbeit wird AT adaptiert für Hochdruckgefrierung, um die Strukturerhaltung zu optimieren, sowie für ultrahochauflösende Lichtmikroskopie; so wird die Kluft zwischen den Auflösungsbereichen von Licht- und Elektronenmikroskopie überbrückt. Diese Adaption nenne ich super-resolution array tomography (srAT). Der srATAnsatz machte es möglich, Gap Junctions mit hoher Präzision und Genauigkeit klar zu identifizieren. Für diese Arbeit konzentrierte ich mich dabei auf Gap Junctions des retrovesikulären Ganglions von C.elegans. Die Ergebnisse dieser Studie veranschaulichen, wie es möglich wäre, elektrische Synapsen systematisch in Konnektome aufzunehmen. Nachfolgende Studien haben srAT auch auf andere Modelle und Fragestellungen angewandt ... KW - Caenorhabditis elegans KW - Synapse KW - Elektronenmikroskopie KW - Myatrophische Lateralsklerose KW - connectomics KW - focused ion-beam scanning electron microscopy KW - super-resolution array tomography Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-189935 ER - TY - JOUR A1 - Mamontova, Victoria A1 - Trifault, Barbara A1 - Boten, Lea A1 - Burger, Kaspar T1 - Commuting to work: Nucleolar long non-coding RNA control ribosome biogenesis from near and far JF - Non-Coding RNA N2 - Gene expression is an essential process for cellular growth, proliferation, and differentiation. The transcription of protein-coding genes and non-coding loci depends on RNA polymerases. Interestingly, numerous loci encode long non-coding (lnc)RNA transcripts that are transcribed by RNA polymerase II (RNAPII) and fine-tune the RNA metabolism. The nucleolus is a prime example of how different lncRNA species concomitantly regulate gene expression by facilitating the production and processing of ribosomal (r)RNA for ribosome biogenesis. Here, we summarise the current findings on how RNAPII influences nucleolar structure and function. We describe how RNAPII-dependent lncRNA can both promote nucleolar integrity and inhibit ribosomal (r)RNA synthesis by modulating the availability of rRNA synthesis factors in trans. Surprisingly, some lncRNA transcripts can directly originate from nucleolar loci and function in cis. The nucleolar intergenic spacer (IGS), for example, encodes nucleolar transcripts that counteract spurious rRNA synthesis in unperturbed cells. In response to DNA damage, RNAPII-dependent lncRNA originates directly at broken ribosomal (r)DNA loci and is processed into small ncRNA, possibly to modulate DNA repair. Thus, lncRNA-mediated regulation of nucleolar biology occurs by several modes of action and is more direct than anticipated, pointing to an intimate crosstalk of RNA metabolic events. KW - long non-coding RNA KW - RNA polymerase II KW - nucleolus KW - ribosome biogenesis Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-242756 SN - 2311-553X VL - 7 IS - 3 ER - TY - JOUR A1 - Makbul, Cihan A1 - Kraft, Christian A1 - Grießmann, Matthias A1 - Rasmussen, Tim A1 - Katzenberger, Kilian A1 - Lappe, Melina A1 - Pfarr, Paul A1 - Stoffer, Cato A1 - Stöhr, Mara A1 - Wandinger, Anna-Maria A1 - Böttcher, Bettina T1 - Binding of a pocket factor to Hepatitis B virus capsids changes the rotamer conformation of Phenylalanine 97 JF - Viruses N2 - (1) Background: During maturation of the Hepatitis B virus, a viral polymerase inside the capsid transcribes a pre-genomic RNA into a partly double stranded DNA-genome. This is followed by envelopment with surface proteins inserted into a membrane. Envelopment is hypothetically regulated by a structural signal that reports the maturation state of the genome. NMR data suggest that such a signal can be mimicked by the binding of the detergent Triton X 100 to hydrophobic pockets in the capsid spikes. (2) Methods: We have used electron cryo-microscopy and image processing to elucidate the structural changes that are concomitant with the binding of Triton X 100. (3) Results: Our maps show that Triton X 100 binds with its hydrophobic head group inside the pocket. The hydrophilic tail delineates the outside of the spike and is coordinated via Lys-96. The binding of Triton X 100 changes the rotamer conformation of Phe-97 in helix 4, which enables a π-stacking interaction with Trp-62 in helix 3. Similar changes occur in mutants with low secretion phenotypes (P5T and L60V) and in a mutant with a pre-mature secretion phenotype (F97L). (4) Conclusion: Binding of Triton X 100 is unlikely to mimic structural maturation because mutants with different secretion phenotypes show similar structural responses. KW - Hepatitis B Virus KW - pocket factor KW - Triton X 100 KW - envelopment KW - maturation signal KW - single strand blocking KW - electron cryo-microscopy KW - isothermal titration calorimetry Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-248565 SN - 1999-4915 VL - 13 IS - 11 ER -