TY  - JOUR
A1  - Gupta, Shishir K.
A1  - Srivastava, Mugdha
A1  - Minocha, Rashmi
A1  - Akash, Aman
A1  - Dangwal, Seema
A1  - Dandekar, Thomas
T1  - Alveolar regeneration in COVID-19 patients: a network perspective
JF  - International Journal of Molecular Sciences
N2  - A viral infection involves entry and replication of viral nucleic acid in a host organism, subsequently leading to biochemical and structural alterations in the host cell. In the case of SARS-CoV-2 viral infection, over-activation of the host immune system may lead to lung damage. Albeit the regeneration and fibrotic repair processes being the two protective host responses, prolonged injury may lead to excessive fibrosis, a pathological state that can result in lung collapse. In this review, we discuss regeneration and fibrosis processes in response to SARS-CoV-2 and provide our viewpoint on the triggering of alveolar regeneration in coronavirus disease 2019 (COVID-19) patients.
KW  - COVID-19
KW  - SARS-CoV-2
KW  - alveolar regeneration
KW  - alveolar fibrosis
KW  - signaling pathway
KW  - network biology
Y1  - 2021
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-284307
SN  - 1422-0067
VL  - 22
IS  - 20
ER  - 
TY  - JOUR
A1  - Gupta, Shishir K.
A1  - Minocha, Rashmi
A1  - Thapa, Prithivi Jung
A1  - Srivastava, Mugdha
A1  - Dandekar, Thomas
T1  - Role of the pangolin in origin of SARS-CoV-2: an evolutionary perspective
JF  - International Journal of Molecular Sciences
N2  - After the recent emergence of SARS-CoV-2 infection, unanswered questions remain related to its evolutionary history, path of transmission or divergence and role of recombination. There is emerging evidence on amino acid substitutions occurring in key residues of the receptor-binding domain of the spike glycoprotein in coronavirus isolates from bat and pangolins. In this article, we summarize our current knowledge on the origin of SARS-CoV-2. We also analyze the host ACE2-interacting residues of the receptor-binding domain of spike glycoprotein in SARS-CoV-2 isolates from bats, and compare it to pangolin SARS-CoV-2 isolates collected from Guangdong province (GD Pangolin-CoV) and Guangxi autonomous regions (GX Pangolin-CoV) of South China. Based on our comparative analysis, we support the view that the Guangdong Pangolins are the intermediate hosts that adapted the SARS-CoV-2 and represented a significant evolutionary link in the path of transmission of SARS-CoV-2 virus. We also discuss the role of intermediate hosts in the origin of Omicron.
KW  - COVID-19
KW  - SARS-CoV-2
KW  - origin
KW  - evolution
KW  - intermediate host
KW  - pangolin
KW  - mutation
KW  - recombination
KW  - adaptation
KW  - transmission
KW  - comparative sequence analysis
Y1  - 2022
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-285995
SN  - 1422-0067
VL  - 23
IS  - 16
ER  -