TY - JOUR A1 - Atienza, Nieves A1 - de Castro, Natalia A1 - Cortés, Carmen A1 - Garrido, M. Ángeles A1 - Grima, Clara I. A1 - Hernández, Gregorio A1 - Márquez, Alberto A1 - Moreno-González, Auxiliadora A1 - Nöllenburg, Martin A1 - Portillo, José Ramón A1 - Reyes, Pedro A1 - Valenzuela, Jesús A1 - Trinidad Villar, Maria A1 - Wolff, Alexander T1 - Cover contact graphs N2 - We study problems that arise in the context of covering certain geometric objects called seeds (e.g., points or disks) by a set of other geometric objects called cover (e.g., a set of disks or homothetic triangles). We insist that the interiors of the seeds and the cover elements are pairwise disjoint, respectively, but they can touch. We call the contact graph of a cover a cover contact graph (CCG). We are interested in three types of tasks, both in the general case and in the special case of seeds on a line: (a) deciding whether a given seed set has a connected CCG, (b) deciding whether a given graph has a realization as a CCG on a given seed set, and (c) bounding the sizes of certain classes of CCG’s. Concerning (a) we give efficient algorithms for the case that seeds are points and show that the problem becomes hard if seeds and covers are disks. Concerning (b) we show that this problem is hard even for point seeds and disk covers (given a fixed correspondence between graph vertices and seeds). Concerning (c) we obtain upper and lower bounds on the number of CCG’s for point seeds. KW - Informatik Y1 - 2012 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-78845 ER - TY - JOUR A1 - Steininger, Michael A1 - Abel, Daniel A1 - Ziegler, Katrin A1 - Krause, Anna A1 - Paeth, Heiko A1 - Hotho, Andreas T1 - ConvMOS: climate model output statistics with deep learning JF - Data Mining and Knowledge Discovery N2 - Climate models are the tool of choice for scientists researching climate change. Like all models they suffer from errors, particularly systematic and location-specific representation errors. One way to reduce these errors is model output statistics (MOS) where the model output is fitted to observational data with machine learning. In this work, we assess the use of convolutional Deep Learning climate MOS approaches and present the ConvMOS architecture which is specifically designed based on the observation that there are systematic and location-specific errors in the precipitation estimates of climate models. We apply ConvMOS models to the simulated precipitation of the regional climate model REMO, showing that a combination of per-location model parameters for reducing location-specific errors and global model parameters for reducing systematic errors is indeed beneficial for MOS performance. We find that ConvMOS models can reduce errors considerably and perform significantly better than three commonly used MOS approaches and plain ResNet and U-Net models in most cases. Our results show that non-linear MOS models underestimate the number of extreme precipitation events, which we alleviate by training models specialized towards extreme precipitation events with the imbalanced regression method DenseLoss. While we consider climate MOS, we argue that aspects of ConvMOS may also be beneficial in other domains with geospatial data, such as air pollution modeling or weather forecasts. KW - Klima KW - Modell KW - Deep learning KW - Neuronales Netz KW - climate KW - neural networks KW - model output statistics Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-324213 SN - 1384-5810 VL - 37 IS - 1 ER - TY - JOUR A1 - Glémarec, Yann A1 - Lugrin, Jean-Luc A1 - Bosser, Anne-Gwenn A1 - Buche, Cédric A1 - Latoschik, Marc Erich T1 - Controlling the stage: a high-level control system for virtual audiences in Virtual Reality JF - Frontiers in Virtual Reality N2 - This article presents a novel method for controlling a virtual audience system (VAS) in Virtual Reality (VR) application, called STAGE, which has been originally designed for supervised public speaking training in university seminars dedicated to the preparation and delivery of scientific talks. We are interested in creating pedagogical narratives: narratives encompass affective phenomenon and rather than organizing events changing the course of a training scenario, pedagogical plans using our system focus on organizing the affects it arouses for the trainees. Efficiently controlling a virtual audience towards a specific training objective while evaluating the speaker’s performance presents a challenge for a seminar instructor: the high level of cognitive and physical demands required to be able to control the virtual audience, whilst evaluating speaker’s performance, adjusting and allowing it to quickly react to the user’s behaviors and interactions. It is indeed a critical limitation of a number of existing systems that they rely on a Wizard of Oz approach, where the tutor drives the audience in reaction to the user’s performance. We address this problem by integrating with a VAS a high-level control component for tutors, which allows using predefined audience behavior rules, defining custom ones, as well as intervening during run-time for finer control of the unfolding of the pedagogical plan. At its core, this component offers a tool to program, select, modify and monitor interactive training narratives using a high-level representation. The STAGE offers the following features: i) a high-level API to program pedagogical narratives focusing on a specific public speaking situation and training objectives, ii) an interactive visualization interface iii) computation and visualization of user metrics, iv) a semi-autonomous virtual audience composed of virtual spectators with automatic reactions to the speaker and surrounding spectators while following the pedagogical plan V) and the possibility for the instructor to embody a virtual spectator to ask questions or guide the speaker from within the Virtual Environment. We present here the design, and implementation of the tutoring system and its integration in STAGE, and discuss its reception by end-users. KW - virtual reality KW - virtual agent KW - behavior perception KW - public speaking KW - education Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-284601 SN - 2673-4192 VL - 3 ER - TY - THES A1 - Löffler, Andre T1 - Constrained Graph Layouts: Vertices on the Outer Face and on the Integer Grid T1 - Graphzeichnen unter Nebenbedingungen: Knoten auf der Außenfacette und mit ganzzahligen Koordinaten N2 - Constraining graph layouts - that is, restricting the placement of vertices and the routing of edges to obey certain constraints - is common practice in graph drawing. In this book, we discuss algorithmic results on two different restriction types: placing vertices on the outer face and on the integer grid. For the first type, we look into the outer k-planar and outer k-quasi-planar graphs, as well as giving a linear-time algorithm to recognize full and closed outer k-planar graphs Monadic Second-order Logic. For the second type, we consider the problem of transferring a given planar drawing onto the integer grid while perserving the original drawings topology; we also generalize a variant of Cauchy's rigidity theorem for orthogonal polyhedra of genus 0 to those of arbitrary genus. N2 - Das Einschränken von Zeichnungen von Graphen, sodass diese bestimmte Nebenbedingungen erfüllen - etwa solche, die das Platzieren von Knoten oder den Verlauf von Kanten beeinflussen - sind im Graphzeichnen allgegenwärtig. In dieser Arbeit befassen wir uns mit algorithmischen Resultaten zu zwei speziellen Einschränkungen, nämlich dem Platzieren von Knoten entweder auf der Außenfacette oder auf ganzzahligen Koordinaten. Für die erste Einschränkung untersuchen wir die außen k-planaren und außen k-quasi-planaren Graphen und geben einen auf monadische Prädikatenlogik zweiter Stufe basierenden Algorithmus an, der überprüft, ob ein Graph voll außen k-planar ist. Für die zweite Einschränkung untersuchen wir das Problem, eine gegebene planare Zeichnung eines Graphen auf das ganzzahlige Koordinatengitter zu transportieren, ohne dabei die Topologie der Zeichnung zu verändern; außerdem generalisieren wir eine Variante von Cauchys Starrheitssatz für orthogonale Polyeder von Geschlecht 0 auf solche von beliebigem Geschlecht. KW - Graphenzeichnen KW - Komplexität KW - Algorithmus KW - Algorithmische Geometrie KW - Kombinatorik KW - Planare Graphen KW - Polyeder KW - Konvexe Zeichnungen Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-215746 SN - 978-3-95826-146-4 SN - 978-3-95826-147-1 N1 - Parallel erschienen als Druckausgabe in Würzburg University Press, ISBN 978-3-95826-146-4, 32,90 EUR PB - Würzburg University Press CY - Würzburg ET - 1. Auflage ER - TY - JOUR A1 - Latoschik, Marc Erich A1 - Wienrich, Carolin T1 - Congruence and plausibility, not presence: pivotal conditions for XR experiences and effects, a novel approach JF - Frontiers in Virtual Reality N2 - Presence is often considered the most important quale describing the subjective feeling of being in a computer-generated and/or computer-mediated virtual environment. The identification and separation of orthogonal presence components, i.e., the place illusion and the plausibility illusion, has been an accepted theoretical model describing Virtual Reality (VR) experiences for some time. This perspective article challenges this presence-oriented VR theory. First, we argue that a place illusion cannot be the major construct to describe the much wider scope of virtual, augmented, and mixed reality (VR, AR, MR: or XR for short). Second, we argue that there is no plausibility illusion but merely plausibility, and we derive the place illusion caused by the congruent and plausible generation of spatial cues and similarly for all the current model’s so-defined illusions. Finally, we propose congruence and plausibility to become the central essential conditions in a novel theoretical model describing XR experiences and effects. KW - XR KW - experience KW - presence KW - congruence KW - plausibility KW - coherence KW - theory KW - prediction Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-284787 SN - 2673-4192 VL - 3 ER - TY - INPR A1 - Nassourou, Mohamadou T1 - Computing Generic Causes of Revelation of the Quranic Verses Using Machine Learning Techniques N2 - Because many verses of the holy Quran are similar, there is high probability that, similar verses addressing same issues share same generic causes of revelation. In this study, machine learning techniques have been employed in order to automatically derive causes of revelation of Quranic verses. The derivation of the causes of revelation is viewed as a classification problem. Initially the categories are based on the verses with known causes of revelation, and the testing set consists of the remaining verses. Based on a computed threshold value, a naïve Bayesian classifier is used to categorize some verses. After that, using a decision tree classifier the remaining uncategorized verses are separated into verses that contain indicators (resultative connectors, causative expressions…), and those that do not. As for those verses having indicators, each one is segmented into its constituent clauses by identification of the linking indicators. Then a dominant clause is extracted and considered either as the cause of revelation, or post-processed by adding or subtracting some terms to form a causal clause that constitutes the cause of revelation. Concerning remaining unclassified verses without indicators, a naive Bayesian classifier is again used to assign each one of them to one of the existing classes based on features and topics similarity. As for verses that could not be classified so far, manual classification was made by considering each verse as a category on its own. The result obtained in this study is encouraging, and shows that automatic derivation of Quranic verses’ generic causes of revelation is achievable, and reasonably reliable for understanding and implementing the teachings of the Quran. KW - Text Mining KW - Koran KW - Text mining KW - Statistical classifiers KW - Text segmentation KW - Causes of revelation KW - Quran Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-66083 ER - TY - INPR A1 - Nassourou, Mohamadou T1 - Computer-based Textual Documents Collation System for Reconstructing the Original Text from Automatically Identified Base Text and Ranked Witnesses N2 - Given a collection of diverging documents about some lost original text, any person interested in the text would try reconstructing it from the diverging documents. Whether it is eclecticism, stemmatics, or copy-text, one is expected to explicitly or indirectly select one of the documents as a starting point or as a base text, which could be emended through comparison with remaining documents, so that a text that could be designated as the original document is generated. Unfortunately the process of giving priority to one of the documents also known as witnesses is a subjective approach. In fact even Cladistics, which could be considered as a computer-based approach of implementing stemmatics, does not present or recommend users to select a certain witness as a starting point for the process of reconstructing the original document. In this study, a computational method using a rule-based Bayesian classifier is used, to assist text scholars in their attempts of reconstructing a non-existing document from some available witnesses. The method developed in this study consists of selecting a base text successively and collating it with remaining documents. Each completed collation cycle stores the selected base text and its closest witness, along with a weighted score of their similarities and differences. At the end of the collation process, a witness selected more often by majority of base texts is considered as the probable base text of the collection. Witnesses’ scores are weighted using a weighting system, based on effects of types of textual modifications on the process of reconstructing original documents. Users have the possibility to select between baseless and base text collation. If a base text is selected, the task is reduced to ranking the witnesses with respect to the base text, otherwise a base text as well as ranking of the witnesses with respect to the base text are computed and displayed on a bar diagram. Additionally this study includes a recursive algorithm for automatically reconstructing the original text from the identified base text and ranked witnesses. KW - Textvergleich KW - Text Mining KW - Textual document collation KW - Base text KW - Reconstruction of original text KW - Gothenburg model KW - Bayesian classifier KW - Textual alterations weighting system Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-65749 ER - TY - JOUR A1 - Scherer, Marc A1 - Fleishman, Sarel J. A1 - Jones, Patrik R. A1 - Dandekar, Thomas A1 - Bencurova, Elena T1 - Computational Enzyme Engineering Pipelines for Optimized Production of Renewable Chemicals JF - Frontiers in Bioengineering and Biotechnology N2 - To enable a sustainable supply of chemicals, novel biotechnological solutions are required that replace the reliance on fossil resources. One potential solution is to utilize tailored biosynthetic modules for the metabolic conversion of CO2 or organic waste to chemicals and fuel by microorganisms. Currently, it is challenging to commercialize biotechnological processes for renewable chemical biomanufacturing because of a lack of highly active and specific biocatalysts. As experimental methods to engineer biocatalysts are time- and cost-intensive, it is important to establish efficient and reliable computational tools that can speed up the identification or optimization of selective, highly active, and stable enzyme variants for utilization in the biotechnological industry. Here, we review and suggest combinations of effective state-of-the-art software and online tools available for computational enzyme engineering pipelines to optimize metabolic pathways for the biosynthesis of renewable chemicals. Using examples relevant for biotechnology, we explain the underlying principles of enzyme engineering and design and illuminate future directions for automated optimization of biocatalysts for the assembly of synthetic metabolic pathways. KW - computational KW - enzyme KW - engineering KW - design KW - biomanufacturing KW - biofuel KW - microbes KW - metabolism Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-240598 SN - 2296-4185 VL - 9 ER - TY - JOUR A1 - Böhler, Elmar A1 - Creignou, Nadia A1 - Galota, Matthias A1 - Reith, Steffen A1 - Schnoor, Henning A1 - Vollmer, Heribert T1 - Complexity Classifications for Different Equivalence and Audit Problems for Boolean Circuits JF - Logical Methods in Computer Science N2 - We study Boolean circuits as a representation of Boolean functions and conskier different equivalence, audit, and enumeration problems. For a number of restricted sets of gate types (bases) we obtain efficient algorithms, while for all other gate types we show these problems are at least NP-hard. KW - hierarchy KW - satisfiability problems Y1 - 2012 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-131121 VL - 8 IS - 3:27 SP - 1 EP - 25 ER - TY - THES A1 - Kosub, Sven T1 - Complexity and Partitions T1 - Komplexität von Partitionen N2 - Computational complexity theory usually investigates the complexity of sets, i.e., the complexity of partitions into two parts. But often it is more appropriate to represent natural problems by partitions into more than two parts. A particularly interesting class of such problems consists of classification problems for relations. For instance, a binary relation R typically defines a partitioning of the set of all pairs (x,y) into four parts, classifiable according to the cases where R(x,y) and R(y,x) hold, only R(x,y) or only R(y,x) holds or even neither R(x,y) nor R(y,x) is true. By means of concrete classification problems such as Graph Embedding or Entailment (for propositional logic), this thesis systematically develops tools, in shape of the boolean hierarchy of NP-partitions and its refinements, for the qualitative analysis of the complexity of partitions generated by NP-relations. The Boolean hierarchy of NP-partitions is introduced as a generalization of the well-known and well-studied Boolean hierarchy (of sets) over NP. Whereas the latter hierarchy has a very simple structure, the situation is much more complicated for the case of partitions into at least three parts. To get an idea of this hierarchy, alternative descriptions of the partition classes are given in terms of finite, labeled lattices. Based on these characterizations the Embedding Conjecture is established providing the complete information on the structure of the hierarchy. This conjecture is supported by several results. A natural extension of the Boolean hierarchy of NP-partitions emerges from the lattice-characterization of its classes by considering partition classes generated by finite, labeled posets. It turns out that all significant ideas translate from the case of lattices. The induced refined Boolean hierarchy of NP-partitions enables us more accuratly capturing the complexity of certain relations (such as Graph Embedding) and a description of projectively closed partition classes. N2 - Die klassische Komplexitätstheorie untersucht in erster Linie die Komplexität von Mengen, d.h. von Zerlegungen (Partitionen) einer Grundmenge in zwei Teile. Häufig werden aber natürliche Fragestellungen viel angemessener durch Zerlegungen in mehr als zwei Teile abgebildet. Eine besonders interessante Klasse solcher Fragestellungen sind Klassifikationsprobleme für Relationen. Zum Beispiel definiert eine Binärrelation R typischerweise eine Zerlegung der Menge aller Paare (x,y) in vier Teile, klassifizierbar danach, ob R(x,y) und R(y,x), R(x,y) aber nicht R(y,x), nicht R(x,y) aber dafür R(y,x) oder weder R(x,y) noch R(y,x) gilt. Anhand konkreter Klassifikationsprobleme, wie zum Beispiel der Einbettbarkeit von Graphen und der Folgerbarkeit für aussagenlogische Formeln, werden in der Dissertation Instrumente für eine qualitative Analyse der Komplexität von Partitionen, die von NP-Relationen erzeugt werden, in Form der Booleschen Hierarchie der NP-Partitionen und ihrer Erweiterungen systematisch entwickelt. Die Boolesche Hierarchie der NP-Partitionen wird als Verallgemeinerung der bereits bekannten und wohluntersuchten Boolesche Hierarchie über NP eingeführt. Während die letztere Hierarchie eine sehr einfache Struktur aufweist, stellt sich die Boolesche Hierarchie der NP-Partitionen im Falle von Zerlegungen in mindestens 3 Teile als sehr viel komplizierter heraus. Um einen Überblick über diese Hierarchien zu erlangen, werden alternative Beschreibungen der Klassen der Hierarchien mittels endlicher, bewerteter Verbände angegeben. Darauf aufbauend wird die Einbettungsvermutung aufgestellt, die uns die vollständige Information über die Struktur der Hierarchie liefert. Diese Vermutung wird mit verschiedene Resultaten untermauert. Eine Erweiterung der Booleschen Hierarchie der NP-Partitionen ergibt sich auf natürliche Weise aus der Charakterisierung ihrer Klassen durch Verbände. Dazu werden Klassen betrachtet, die von endlichen, bewerteten Halbordnungen erzeugt werden. Es zeigt sich, dass die wesentlichen Konzepte vom Verbandsfall übertragen werden können. Die entstehende Verfeinerung der Booleschen Hierarchie der NP-Partitionen ermöglicht die exaktere Analyse der Komplexität bestimmter Relationen (wie zum Beispiel der Einbettbarkeit von Graphen) und die Beschreibung projektiv abgeschlossener Partitionenklassen. KW - Partition KW - Boolesche Hierarchie KW - Komplexitätsklasse NP KW - Theoretische Informatik KW - Komplexitätstheorie KW - NP KW - Boolesche Hierarchie KW - Partitionen KW - Verbände KW - Halbordnungen KW - Theoretical computer science KW - computational complexity KW - NP KW - Boolean hierarchy KW - partitions KW - lattices KW - posets Y1 - 2001 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-2808 ER -