TY - JOUR A1 - Gupta, Shishir K. A1 - Minocha, Rashmi A1 - Thapa, Prithivi Jung A1 - Srivastava, Mugdha A1 - Dandekar, Thomas T1 - Role of the pangolin in origin of SARS-CoV-2: an evolutionary perspective JF - International Journal of Molecular Sciences N2 - After the recent emergence of SARS-CoV-2 infection, unanswered questions remain related to its evolutionary history, path of transmission or divergence and role of recombination. There is emerging evidence on amino acid substitutions occurring in key residues of the receptor-binding domain of the spike glycoprotein in coronavirus isolates from bat and pangolins. In this article, we summarize our current knowledge on the origin of SARS-CoV-2. We also analyze the host ACE2-interacting residues of the receptor-binding domain of spike glycoprotein in SARS-CoV-2 isolates from bats, and compare it to pangolin SARS-CoV-2 isolates collected from Guangdong province (GD Pangolin-CoV) and Guangxi autonomous regions (GX Pangolin-CoV) of South China. Based on our comparative analysis, we support the view that the Guangdong Pangolins are the intermediate hosts that adapted the SARS-CoV-2 and represented a significant evolutionary link in the path of transmission of SARS-CoV-2 virus. We also discuss the role of intermediate hosts in the origin of Omicron. KW - COVID-19 KW - SARS-CoV-2 KW - origin KW - evolution KW - intermediate host KW - pangolin KW - mutation KW - recombination KW - adaptation KW - transmission KW - comparative sequence analysis Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-285995 SN - 1422-0067 VL - 23 IS - 16 ER - TY - THES A1 - Bleier, Michael T1 - Underwater Laser Scanning - Refractive Calibration, Self-calibration and Mapping for 3D Reconstruction T1 - Laserscanning unter Wasser - Refraktive Kalibrierung, Selbstkalibrierung und Kartierung zur 3D Rekonstruktion N2 - There is great interest in affordable, precise and reliable metrology underwater: Archaeologists want to document artifacts in situ with high detail. In marine research, biologists require the tools to monitor coral growth and geologists need recordings to model sediment transport. Furthermore, for offshore construction projects, maintenance and inspection millimeter-accurate measurements of defects and offshore structures are essential. While the process of digitizing individual objects and complete sites on land is well understood and standard methods, such as Structure from Motion or terrestrial laser scanning, are regularly applied, precise underwater surveying with high resolution is still a complex and difficult task. Applying optical scanning techniques in water is challenging due to reduced visibility caused by turbidity and light absorption. However, optical underwater scanners provide significant advantages in terms of achievable resolution and accuracy compared to acoustic systems. This thesis proposes an underwater laser scanning system and the algorithms for creating dense and accurate 3D scans in water. It is based on laser triangulation and the main optical components are an underwater camera and a cross-line laser projector. The prototype is configured with a motorized yaw axis for capturing scans from a tripod. Alternatively, it is mounted to a moving platform for mobile mapping. The main focus lies on the refractive calibration of the underwater camera and laser projector, the image processing and 3D reconstruction. For highest accuracy, the refraction at the individual media interfaces must be taken into account. This is addressed by an optimization-based calibration framework using a physical-geometric camera model derived from an analytical formulation of a ray-tracing projection model. In addition to scanning underwater structures, this work presents the 3D acquisition of semi-submerged structures and the correction of refraction effects. As in-situ calibration in water is complex and time-consuming, the challenge of transferring an in-air scanner calibration to water without re-calibration is investigated, as well as self-calibration techniques for structured light. The system was successfully deployed in various configurations for both static scanning and mobile mapping. An evaluation of the calibration and 3D reconstruction using reference objects and a comparison of free-form surfaces in clear water demonstrate the high accuracy potential in the range of one millimeter to less than one centimeter, depending on the measurement distance. Mobile underwater mapping and motion compensation based on visual-inertial odometry is demonstrated using a new optical underwater scanner based on fringe projection. Continuous registration of individual scans allows the acquisition of 3D models from an underwater vehicle. RGB images captured in parallel are used to create 3D point clouds of underwater scenes in full color. 3D maps are useful to the operator during the remote control of underwater vehicles and provide the building blocks to enable offshore inspection and surveying tasks. The advancing automation of the measurement technology will allow non-experts to use it, significantly reduce acquisition time and increase accuracy, making underwater metrology more cost-effective. N2 - Das Interesse an präziser, zuverlässiger und zugleich kostengünstiger Unterwassermesstechnik ist groß. Beispielsweise wollen Archäologen Artefakte in situ mit hoher Detailtreue dokumentieren und in der Meeresforschung benötigen Biologen Messwerkzeuge zur Beobachtung des Korallenwachstums. Auch Geologen sind auf Messdaten angewiesen, um Sedimenttransporte zu modellieren. Darüber hinaus ist für die Errichtung von Offshore-Bauwerken, sowie deren Wartung und Inspektion eine millimetergenaue Vermessung von vorhandenen Strukturen und Defekten unerlässlich. Während die Digitalisierung einzelner Objekte und ganzer Areale an Land gut erforscht ist und verschiedene Standardmethoden, wie zum Beispiel Structure from Motion oder terrestrisches Laserscanning, regelmäßig eingesetzt werden, ist die präzise und hochauflösende Unterwasservermessung nach wie vor eine komplexe und schwierige Aufgabe. Die Anwendung optischer Messtechnik im Wasser ist aufgrund der eingeschränkten Sichttiefe durch Trübung und Lichtabsorption eine Herausforderung. Optische Unterwasserscanner bieten jedoch Vorteile hinsichtlich der erreichbaren Auflösung und Genauigkeit gegenüber akustischen Systemen. In dieser Arbeit werden ein Unterwasser-Laserscanning-System und die Algorithmen zur Erzeugung von 3D-Scans mit hoher Punktdichte im Wasser vorgestellt. Es basiert auf Lasertriangulation und die optischen Hauptkomponenten sind eine Unterwasserkamera und ein Kreuzlinienlaserprojektor. Das System ist mit einer motorisierten Drehachse ausgestattet, um Scans von einem Stativ aus aufzunehmen. Alternativ kann es von einer beweglichen Plattform aus für mobile Kartierung eingesetzt werden. Das Hauptaugenmerk liegt auf der refraktiven Kalibrierung der Unterwasserkamera und des Laserprojektors, der Bildverarbeitung und der 3D-Rekonstruktion. Um höchste Genauigkeit zu erreichen, muss die Brechung an den einzelnen Medienübergängen berücksichtigt werden. Dies wird durch ein physikalisch-geometrisches Kameramodell, das auf einer analytischen Beschreibung der Strahlenverfolgung basiert, und ein optimierungsbasiertes Kalibrierverfahren erreicht. Neben dem Scannen von Unterwasserstrukturen wird in dieser Arbeit auch die 3D-Erfassung von teilweise im Wasser befindlichen Strukturen und die Korrektur der dabei auftretenden Brechungseffekte vorgestellt. Da die Kalibrierung im Wasser komplex und zeitintensiv ist, wird die Übertragung einer Kalibrierung des Scanners in Luft auf die Bedingungen im Wasser ohne Neukalibrierung, sowie die Selbstkalibrierung für Lichtschnittverfahren untersucht. Das System wurde in verschiedenen Konfigurationen sowohl für statisches Scannen als auch für die mobile Kartierung erfolgreich eingesetzt. Die Validierung der Kalibrierung und der 3D-Rekonstruktion anhand von Referenzobjekten und der Vergleich von Freiformflächen in klarem Wasser zeigen das hohe Genauigkeitspotenzial im Bereich von einem Millimeter bis weniger als einem Zentimeter in Abhängigkeit von der Messdistanz. Die mobile Unterwasserkartierung und Bewegungskompensation anhand visuell-inertialer Odometrie wird mit einem neuen optischen Unterwasserscanner auf Basis der Streifenprojektion demonstriert. Dabei ermöglicht die kontinuierliche Registrierung von Einzelscans die Erfassung von 3D-Modellen von einem Unterwasserfahrzeug aus. Mit Hilfe von parallel aufgenommenen RGB-Bildern werden dabei farbige 3D-Punktwolken der Unterwasserszenen erstellt. Diese 3D-Karten dienen beispielsweise dem Bediener bei der Fernsteuerung von Unterwasserfahrzeugen und bilden die Grundlage für Offshore-Inspektions- und Vermessungsaufgaben. Die fortschreitende Automatisierung der Messtechnik wird somit auch eine Verwendung durch Nichtfachleute ermöglichen und gleichzeitig die Erfassungszeit erheblich verkürzen und die Genauigkeit verbessern, was die Vermessung im Wasser kostengünstiger und effizienter macht. T3 - Forschungsberichte in der Robotik = Research Notes in Robotics - 28 KW - Selbstkalibrierung KW - Punktwolke KW - Bildverarbeitung KW - 3D Reconstruction KW - Self-calibration KW - Underwater Scanning KW - Underwater Mapping KW - Dreidimensionale Rekonstruktion KW - 3D-Rekonstruktion Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-322693 SN - 978-3-945459-45-4 ER - TY - RPRT A1 - Großmann, Marcel A1 - Le, Duy Thanh T1 - Visualization of Network Emulation Enabled by Kathará T2 - KuVS Fachgespräch - Würzburg Workshop on Modeling, Analysis and Simulation of Next-Generation Communication Networks 2023 (WueWoWAS’23) N2 - In network research, reproducibility of experiments is not always easy to achieve. Infrastructures are cumbersome to set up or are not available due to vendor-specific devices. Emulators try to overcome those issues to a given extent and are available in different service models. Unfortunately, the usability of emulators requires time-consuming efforts and a deep understanding of their functionality. At first, we analyze to which extent currently available open-source emulators support network configurations and how user-friendly they are. With these insights, we describe, how an ease-to-use emulator is implemented and may run as a Network Emulator as a Service (NEaaS). Therefore, virtualization plays a major role in order to deploy a NEaaS based on Kathará. KW - Network Emulator KW - Visualized Kathará KW - Containerization Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-322189 ER - TY - RPRT A1 - Dworzak, Manuel A1 - Großmann, Marcel A1 - Le, Duy Thanh T1 - Federated Learning for Service Placement in Fog and Edge Computing T2 - KuVS Fachgespräch - Würzburg Workshop on Modeling, Analysis and Simulation of Next-Generation Communication Networks 2023 (WueWoWAS’23) N2 - Service orchestration requires enormous attention and is a struggle nowadays. Of course, virtualization provides a base level of abstraction for services to be deployable on a lot of infrastructures. With container virtualization, the trend to migrate applications to a micro-services level in order to be executable in Fog and Edge Computing environments increases manageability and maintenance efforts rapidly. Similarly, network virtualization adds effort to calibrate IP flows for Software-Defined Networks and eventually route it by means of Network Function Virtualization. Nevertheless, there are concepts like MAPE-K to support micro-service distribution in next-generation cloud and network environments. We want to explore, how a service distribution can be improved by adopting machine learning concepts for infrastructure or service changes. Therefore, we show how federated machine learning is integrated into a cloud-to-fog-continuum without burdening single nodes. KW - fog computing KW - SDN KW - orchestration KW - federated learning Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-322193 ER - TY - JOUR A1 - Koopmann, Tobias A1 - Stubbemann, Maximilian A1 - Kapa, Matthias A1 - Paris, Michael A1 - Buenstorf, Guido A1 - Hanika, Tom A1 - Hotho, Andreas A1 - Jäschke, Robert A1 - Stumme, Gerd T1 - Proximity dimensions and the emergence of collaboration: a HypTrails study on German AI research JF - Scientometrics N2 - Creation and exchange of knowledge depends on collaboration. Recent work has suggested that the emergence of collaboration frequently relies on geographic proximity. However, being co-located tends to be associated with other dimensions of proximity, such as social ties or a shared organizational environment. To account for such factors, multiple dimensions of proximity have been proposed, including cognitive, institutional, organizational, social and geographical proximity. Since they strongly interrelate, disentangling these dimensions and their respective impact on collaboration is challenging. To address this issue, we propose various methods for measuring different dimensions of proximity. We then present an approach to compare and rank them with respect to the extent to which they indicate co-publications and co-inventions. We adapt the HypTrails approach, which was originally developed to explain human navigation, to co-author and co-inventor graphs. We evaluate this approach on a subset of the German research community, specifically academic authors and inventors active in research on artificial intelligence (AI). We find that social proximity and cognitive proximity are more important for the emergence of collaboration than geographic proximity. KW - collaboration KW - dimensions of proximity KW - co-authorships KW - co-inventorships KW - embedding techniques Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-269831 SN - 1588-2861 VL - 126 IS - 12 ER - TY - JOUR A1 - Fathy, Moustafa A1 - Darwish, Mostafa A. A1 - Abdelhamid, Al-Shaimaa M. A1 - Alrashedy, Gehad M. A1 - Othman, Othman Ali A1 - Naseem, Muhammad A1 - Dandekar, Thomas A1 - Othman, Eman M. T1 - Kinetin ameliorates cisplatin-induced hepatotoxicity and lymphotoxicity via attenuating oxidative damage, cell apoptosis and inflammation in rats JF - Biomedicines N2 - Though several previous studies reported the in vitro and in vivo antioxidant effect of kinetin (Kn), details on its action in cisplatin-induced toxicity are still scarce. In this study we evaluated, for the first time, the effects of kinetin in cisplatin (cp)- induced liver and lymphocyte toxicity in rats. Wistar male albino rats were divided into nine groups: (i) the control (C), (ii) groups 2,3 and 4, which received 0.25, 0.5 and 1 mg/kg kinetin for 10 days; (iii) the cisplatin (cp) group, which received a single intraperitoneal injection of CP (7.0 mg/kg); and (iv) groups 6, 7, 8 and 9, which received, for 10 days, 0.25, 0.5 and 1 mg/kg kinetin or 200 mg/kg vitamin C, respectively, and Cp on the fourth day. CP-injected rats showed a significant impairment in biochemical, oxidative stress and inflammatory parameters in hepatic tissue and lymphocytes. PCR showed a profound increase in caspase-3, and a significant decline in AKT gene expression. Intriguingly, Kn treatment restored the biochemical, redox status and inflammatory parameters. Hepatic AKT and caspase-3 expression as well as CD95 levels in lymphocytes were also restored. In conclusion, Kn mitigated oxidative imbalance, inflammation and apoptosis in CP-induced liver and lymphocyte toxicity; therefore, it can be considered as a promising therapy. KW - cisplatin KW - hepatotoxicity KW - lymphotoxicity KW - oxidative stress KW - AKT KW - CD95 KW - caspase-3 Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-281686 SN - 2227-9059 VL - 10 IS - 7 ER - TY - RPRT A1 - Martino, Luigi A1 - Deutschmann, Jörg A1 - Hielscher, Kai-Steffen A1 - German, Reinhard T1 - Towards a 5G Satellite Communication Framework for V2X T2 - KuVS Fachgespräch - Würzburg Workshop on Modeling, Analysis and Simulation of Next-Generation Communication Networks 2023 (WueWoWAS’23) N2 - In recent years, satellite communication has been expanding its field of application in the world of computer networks. This paper aims to provide an overview of how a typical scenario involving 5G Non-Terrestrial Networks (NTNs) for vehicle to everything (V2X) applications is characterized. In particular, a first implementation of a system that integrates them together will be described. Such a framework will later be used to evaluate the performance of applications such as Vehicle Monitoring (VM), Remote Driving (RD), Voice Over IP (VoIP), and others. Different configuration scenarios such as Low Earth Orbit and Geostationary Orbit will be considered. KW - 5G KW - non-terrestrial networks KW - satellite communication Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-322148 ER - TY - RPRT A1 - Rauber, Christof A. O. A1 - Brechtel, Lukas A1 - Schotten, Hans D. T1 - JCAS-Enabled Sensing as a Service in 6th-Generation Mobile Communication Networks T2 - KuVS Fachgespräch - Würzburg Workshop on Modeling, Analysis and Simulation of Next-Generation Communication Networks 2023 (WueWoWAS’23) N2 - The introduction of new types of frequency spectrum in 6G technology facilitates the convergence of conventional mobile communications and radar functions. Thus, the mobile network itself becomes a versatile sensor system. This enables mobile network operators to offer a sensing service in addition to conventional data and telephony services. The potential benefits are expected to accrue to various stakeholders, including individuals, the environment, and society in general. The paper discusses technological development, possible integration, and use cases, as well as future development areas. KW - Sensing-aaS KW - JCAS KW - 6G Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-322135 ER - TY - RPRT A1 - Loh, Frank A1 - Raffeck, Simon A1 - Geißler, Stefan A1 - Hoßfeld, Tobias T1 - Paving the Way for an Energy Efficient and Sustainable Future Internet of Things T2 - KuVS Fachgespräch - Würzburg Workshop on Modeling, Analysis and Simulation of Next-Generation Communication Networks 2023 (WueWoWAS’23) N2 - In this work, we describe the network from data collection to data processing and storage as a system based on different layers. We outline the different layers and highlight major tasks and dependencies with regard to energy consumption and energy efficiency. With this view, we can outwork challenges and questions a future system architect must answer to provide a more sustainable, green, resource friendly, and energy efficient application or system. Therefore, all system layers must be considered individually but also altogether for future IoT solutions. This requires, in particular, novel sustainability metrics in addition to current Quality of Service and Quality of Experience metrics to provide a high power, user satisfying, and sustainable network. KW - Internet of Things KW - energy efficiency KW - sustainability Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-322161 ER - TY - RPRT A1 - Funda, Christoph A1 - Konheiser, Tobias A1 - German, Reinhard A1 - Hielscher, Kai-Steffen T1 - How to Model and Predict the Scalability of a Hardware-In-The-Loop Test Bench for Data Re-Injection? T2 - KuVS Fachgespräch - Würzburg Workshop on Modeling, Analysis and Simulation of Next-Generation Communication Networks 2023 (WueWoWAS’23) N2 - This paper describes a novel application of an empirical network calculus model based on measurements of a hardware-in-the-loop (HIL) test system. The aim is to predict the performance of a HIL test bench for open-loop re-injection in the context of scalability. HIL test benches are distributed computer systems including software, hardware, and networking devices. They are used to validate complex technical systems, but have not yet been system under study themselves. Our approach is to use measurements from the HIL system to create an empirical model for arrival and service curves. We predict the performance and design the previously unknown parameters of the HIL simulator with network calculus (NC), namely the buffer sizes and the minimum needed pre-buffer time for the playback buffer. We furthermore show, that it is possible to estimate the CPU load from arrival and service-curves based on the utilization theorem, and hence estimate the scalability of the HIL system in the context of the number of sensor streams. KW - hardware-in-the-loop simulation KW - computer performance evaluation KW - network calculus KW - scalability evaluation Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-322150 ER -