TY - JOUR A1 - Merget, Benjamin A1 - Koetschan, Christian A1 - Hackl, Thomas A1 - Förster, Frank A1 - Dandekar, Thomas A1 - Müller, Tobias A1 - Schultz, Jörg A1 - Wolf, Matthias T1 - The ITS2 Database JF - Journal of Visual Expression N2 - The internal transcribed spacer 2 (ITS2) has been used as a phylogenetic marker for more than two decades. As ITS2 research mainly focused on the very variable ITS2 sequence, it confined this marker to low-level phylogenetics only. However, the combination of the ITS2 sequence and its highly conserved secondary structure improves the phylogenetic resolution1 and allows phylogenetic inference at multiple taxonomic ranks, including species delimitation. The ITS2 Database presents an exhaustive dataset of internal transcribed spacer 2 sequences from NCBI GenBank accurately reannotated. Following an annotation by profile Hidden Markov Models (HMMs), the secondary structure of each sequence is predicted. First, it is tested whether a minimum energy based fold (direct fold) results in a correct, four helix conformation. If this is not the case, the structure is predicted by homology modeling. In homology modeling, an already known secondary structure is transferred to another ITS2 sequence, whose secondary structure was not able to fold correctly in a direct fold. The ITS2 Database is not only a database for storage and retrieval of ITS2 sequence-structures. It also provides several tools to process your own ITS2 sequences, including annotation, structural prediction, motif detection and BLAST search on the combined sequence-structure information. Moreover, it integrates trimmed versions of 4SALE and ProfDistS for multiple sequence-structure alignment calculation and Neighbor Joining tree reconstruction. Together they form a coherent analysis pipeline from an initial set of sequences to a phylogeny based on sequence and secondary structure. In a nutshell, this workbench simplifies first phylogenetic analyses to only a few mouse-clicks, while additionally providing tools and data for comprehensive large-scale analyses. KW - homology modeling KW - molecular systematics KW - internal transcribed spacer 2 KW - alignment KW - genetics KW - secondary structure KW - ribosomal RNA KW - phylogenetic tree KW - phylogeny Y1 - 2012 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-124600 VL - 61 IS - e3806 ER - TY - JOUR A1 - Vainshtein, Yevhen A1 - Sanchez, Mayka A1 - Brazma, Alvis A1 - Hentze, Matthias W. A1 - Dandekar, Thomas A1 - Muckenthaler, Martina U. T1 - The IronChip evaluation package: a package of perl modules for robust analysis of custom microarrays N2 - Background: Gene expression studies greatly contribute to our understanding of complex relationships in gene regulatory networks. However, the complexity of array design, production and manipulations are limiting factors, affecting data quality. The use of customized DNA microarrays improves overall data quality in many situations, however, only if for these specifically designed microarrays analysis tools are available. Results: The IronChip Evaluation Package (ICEP) is a collection of Perl utilities and an easy to use data evaluation pipeline for the analysis of microarray data with a focus on data quality of custom-designed microarrays. The package has been developed for the statistical and bioinformatical analysis of the custom cDNA microarray IronChip but can be easily adapted for other cDNA or oligonucleotide-based designed microarray platforms. ICEP uses decision tree-based algorithms to assign quality flags and performs robust analysis based on chip design properties regarding multiple repetitions, ratio cut-off, background and negative controls. Conclusions: ICEP is a stand-alone Windows application to obtain optimal data quality from custom-designed microarrays and is freely available here (see “Additional Files” section) and at: http://www.alice-dsl.net/evgeniy. vainshtein/ICEP/ KW - Microarray KW - ICEP KW - IronChip Evaluation Package Y1 - 2010 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-67869 ER - TY - JOUR A1 - Breves, Priska A1 - Dodel, Nicola T1 - The influence of cybersickness and the media devices’ mobility on the persuasive effects of 360° commercials JF - Multimedia Tools and Applications N2 - With the rise of immersive media, advertisers have started to use 360° commercials to engage and persuade consumers. Two experiments were conducted to address research gaps and to validate the positive impact of 360° commercials in realistic settings. The first study (N = 62) compared the effects of 360° commercials using either a mobile cardboard head-mounted display (HMD) or a laptop. This experiment was conducted in the participants’ living rooms and incorporated individual feelings of cybersickness as a moderator. The participants who experienced the 360° commercial with the HMD reported higher spatial presence and product evaluation, but their purchase intentions were only increased when their reported cybersickness was low. The second experiment (N = 197) was conducted online and analyzed the impact of 360° commercials that were experienced with mobile (smartphone/tablet) or static (laptop/desktop) devices instead of HMDs. The positive effects of omnidirectional videos were stronger when participants used mobile devices. KW - virtual reality KW - immersive advertising KW - spatial presence KW - cybersickness KW - advertising effectiveness Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-269194 SN - 1573-7721 VL - 80 IS - 18 ER - TY - JOUR A1 - Unruh, Fabian A1 - Landeck, Maximilian A1 - Oberdörfer, Sebastian A1 - Lugrin, Jean-Luc A1 - Latoschik, Marc Erich T1 - The Influence of Avatar Embodiment on Time Perception - Towards VR for Time-Based Therapy JF - Frontiers in Virtual Reality N2 - Psycho-pathological conditions, such as depression or schizophrenia, are often accompanied by a distorted perception of time. People suffering from this conditions often report that the passage of time slows down considerably and that they are “stuck in time.” Virtual Reality (VR) could potentially help to diagnose and maybe treat such mental conditions. However, the conditions in which a VR simulation could correctly diagnose a time perception deviation are still unknown. In this paper, we present an experiment investigating the difference in time experience with and without a virtual body in VR, also known as avatar. The process of substituting a person’s body with a virtual body is called avatar embodiment. Numerous studies demonstrated interesting perceptual, emotional, behavioral, and psychological effects caused by avatar embodiment. However, the relations between time perception and avatar embodiment are still unclear. Whether or not the presence or absence of an avatar is already influencing time perception is still open to question. Therefore, we conducted a between-subjects design with and without avatar embodiment as well as a real condition (avatar vs. no-avatar vs. real). A group of 105 healthy subjects had to wait for seven and a half minutes in a room without any distractors (e.g., no window, magazine, people, decoration) or time indicators (e.g., clocks, sunlight). The virtual environment replicates the real physical environment. Participants were unaware that they will be asked to estimate their waiting time duration as well as describing their experience of the passage of time at a later stage. Our main finding shows that the presence of an avatar is leading to a significantly faster perceived passage of time. It seems to be promising to integrate avatar embodiment in future VR time-based therapy applications as they potentially could modulate a user’s perception of the passage of time. We also found no significant difference in time perception between the real and the VR conditions (avatar, no-avatar), but further research is needed to better understand this outcome. KW - virtual reality KW - time perception KW - avatar embodiment KW - immersion KW - human computer interaction (HCI) Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-259076 VL - 2 ER - TY - JOUR A1 - Obremski, David A1 - Friedrich, Paula A1 - Haak, Nora A1 - Schaper, Philipp A1 - Lugrin, Birgit T1 - The impact of mixed-cultural speech on the stereotypical perception of a virtual robot JF - Frontiers in Robotics and AI N2 - Despite the fact that mixed-cultural backgrounds become of increasing importance in our daily life, the representation of multiple cultural backgrounds in one entity is still rare in socially interactive agents (SIAs). This paper’s contribution is twofold. First, it provides a survey of research on mixed-cultured SIAs. Second, it presents a study investigating how mixed-cultural speech (in this case, non-native accent) influences how a virtual robot is perceived in terms of personality, warmth, competence and credibility. Participants with English or German respectively as their first language watched a video of a virtual robot speaking in either standard English or German-accented English. It was expected that the German-accented speech would be rated more positively by native German participants as well as elicit the German stereotypes credibility and conscientiousness for both German and English participants. Contrary to the expectations, German participants rated the virtual robot lower in terms of competence and credibility when it spoke with a German accent, whereas English participants perceived the virtual robot with a German accent as more credible compared to the version without an accent. Both the native English and native German listeners classified the virtual robot with a German accent as significantly more neurotic than the virtual robot speaking standard English. This work shows that by solely implementing a non-native accent in a virtual robot, stereotypes are partly transferred. It also shows that the implementation of a non-native accent leads to differences in the perception of the virtual robot. KW - non-native accent KW - social robotics KW - intelligent virtual agents KW - stereotypes KW - mixed-cultural KW - culturally aware KW - socially interactive agents Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-293531 SN - 2296-9144 VL - 9 ER - TY - THES A1 - Schmitz, Heinz T1 - The Forbidden Pattern Approach to Concatenation Hierarchies T1 - Verbotsmuster und Hierarchien regulärer sternfreier Sprachen N2 - The thesis looks at the question asking for the computability of the dot-depth of star-free regular languages. Here one has to determine for a given star-free regular language the minimal number of alternations between concatenation on one hand, and intersection, union, complement on the other hand. This question was first raised in 1971 (Brzozowski/Cohen) and besides the extended star-heights problem usually refered to as one of the most difficult open questions on regular languages. The dot-depth problem can be captured formally by hierarchies of classes of star-free regular languages B(0), B(1/2), B(1), B(3/2),... and L(0), L(1/2), L(1), L(3/2),.... which are defined via alternating the closure under concatenation and Boolean operations, beginning with single alphabet letters. Now the question of dot-depth is the question whether these hierarchy classes have decidable membership problems. The thesis makes progress on this question using the so-called forbidden pattern approach: Classes of regular languages are characterized in terms of patterns in finite automata (subgraphs in the transition graph) that are not allowed. Such a characterization immediately implies the decidability of the respective class, since the absence of a certain pattern in a given automaton can be effectively verified. Before this work, the decidability of B(0), B(1/2), B(1) and L(0), L(1/2), L(1), L(3/2) were known. Here a detailed study of these classes with help of forbidden patterns is given which leads to new insights into their inner structure. Furthermore, the decidability of B(3/2) is proven. Based on these results a theory of pattern iteration is developed which leads to the introduction of two new hierarchies of star-free regular languages. These hierarchies are decidable on one hand, on the other hand they are in close connection to the classes B(n) and L(n). It remains an open question here whether they may in fact coincide. Some evidence is given in favour of this conjecture which opens a new way to attack the dot-depth problem. Moreover, it is shown that the class L(5/2) is decidable in the restricted case of a two-letter alphabet. N2 - Die Arbeit beschaeftigt sich mit der Frage nach der Berechenbarkeit der Punkttiefe sternfreier regulaerer Sprachen. Dabei handelt es sich um die Aufgabe, zu einer gegebenen sternfreien regulaeren Sprache die minimal moegliche Anzahl von Wechseln zwischen den Operationen Konkatenation einerseits und Durchschnitt, Vereinigung, Komplement andererseits in einem sternfreien regulaeren Ausdruck fuer die gegebene Sprache zu bestimmen. Diese Frage wurde 1971 erstmals aufgeworfen (Brzozowski/Cohen) und gilt neben dem Problem der erweiterten Sternhoehe als eine der schwierigsten offenen Fragen der Theorie der regulaeren Sprachen. Formal fassen laesst sich das Problem der Punkttiefe durch Hierarchien von Klassen sternfreier regulaerer Sprachen B(0), B(1/2), B(1), B(3/2),...sowie L(0), L(1/2), L(1), L(3/2),.... die - ausgehend von einzelnen Buchstaben - mittels Alternierung zwischen Konkatenation und Booleschen Operationen definiert sind. Die Frage nach der Punkttiefe wird hier zur Frage nach der Entscheidbarkeit der Hierarchieklassen. In der Arbeit werden neue Fortschritte mittels sogenannter Verbotsmuster erzielt. Bei diesem Ansatz werden Klassen regulaerer Sprachen dadurch charakterisiert, dass in den zugehoerigen endlichen Automaten bestimmte Muster (Teilgraphen des Ueberfuehrungsgraphen) verboten werden. Gelingt eine solche Charakterisierung, folgt unmittelbar die Entscheidbarkeit der Klasse, da das Nichtvorhandensein eines Musters in einem gegebenen endlichen Automaten effektiv geprueft werden kann. Bisher war die Entscheidbarkeit von B(0), B(1/2), B(1) und L(0), L(1/2), L(1), L(3/2) bekannt. Mit Hilfe von Verbotsmustern erfolgt eine genaue Untersuchung dieser Klassen, die zu neuen Erkenntnissen ueber ihre innere Struktur fuehrt. Darueberhinaus gelingt der Nachweis der Entscheidbarkeit von B(3/2). Basierend auf diesen Ergebnissen wird eine Theorie der Verbotsmusteriteration entwickelt, die zur Einfuehrung von zwei neuen Hierarchien sternfreier regulaerer Sprachen fuehrt. Diese neuen Hierarchien sind zum einen entscheidbar, zum anderen stehen sie in enger Beziehung zu den Klassen B(n) und L(n). Es bleibt an dieser Stelle eine offene Frage, ob sie eventuell sogar mit ihnen uebereinstimmen. Fuer diese Vermutung werden einige Indizien gesammelt und somit ein neuer Weg fuer eine moegliche Loesung des Problems der Punkttiefe aufgezeigt. In diesem Zusammenhang erfolgt auch erstmals der Nachweis der Entscheidbarkeit der Klasse L(5/2) im eingeschraenkten Fall eines zweielementigen Alphabets. KW - Sternfreie Sprache KW - Dot-Depth-Hierarchie KW - Straubing-Th´erien-Hierarchie KW - Verbotenes Muster KW - Theoretische Informatik KW - reguläre Sprachen KW - endliche Automaten KW - Dot-Depth Problem KW - Entscheidbarkeit KW - Verbotsmuster KW - Theoretical Computer Science KW - regular languages KW - finite automata KW - dot-depth problem KW - decidability KW - forbidden patterns Y1 - 2000 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-2832 ER - TY - JOUR A1 - Kunz, Meik A1 - Liang, Chunguang A1 - Nilla, Santosh A1 - Cecil, Alexander A1 - Dandekar, Thomas T1 - The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development JF - Database N2 - The drug-minded protein interaction database (DrumPID) has been designed to provide fast, tailored information on drugs and their protein networks including indications, protein targets and side-targets. Starting queries include compound, target and protein interactions and organism-specific protein families. Furthermore, drug name, chemical structures and their SMILES notation, affected proteins (potential drug targets), organisms as well as diseases can be queried including various combinations and refinement of searches. Drugs and protein interactions are analyzed in detail with reference to protein structures and catalytic domains, related compound structures as well as potential targets in other organisms. DrumPID considers drug functionality, compound similarity, target structure, interactome analysis and organismic range for a compound, useful for drug development, predicting drug side-effects and structure–activity relationships. KW - drug-minded protein KW - database Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-147369 VL - 2016 ER - TY - RPRT A1 - Kounev, Samuel A1 - Brosig, Fabian A1 - Huber, Nikolaus T1 - The Descartes Modeling Language N2 - This technical report introduces the Descartes Modeling Language (DML), a new architecture-level modeling language for modeling Quality-of-Service (QoS) and resource management related aspects of modern dynamic IT systems, infrastructures and services. DML is designed to serve as a basis for self-aware resource management during operation ensuring that system QoS requirements are continuously satisfied while infrastructure resources are utilized as efficiently as possible. KW - Ressourcenmanagement KW - Software Engineering KW - Resource and Performance Management KW - Software Performance Engineering KW - Software Performance Modeling KW - Performance Management KW - Quality-of-Service Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-104887 ER - TY - THES A1 - Driewer, Frauke T1 - Teleoperation Interfaces in Human-Robot Teams T1 - Benutzerschnittstellen für Teleoperation in Mensch-Roboter Teams N2 - Diese Arbeit beschäftigt sich mit der Verbesserung von Mensch-Roboter Interaktion in Mensch-Roboter Teams für Teleoperation Szenarien, wie z.B. robotergestützte Feuerwehreinsätze. Hierbei wird ein Konzept und eine Architektur für ein System zur Unterstützung von Teleoperation von Mensch-Roboter Teams vorgestellt. Die Anforderungen an Informationsaustausch und -verarbeitung, insbesondere für die Anwendung Rettungseinsatz, werden ausgearbeitet. Weiterhin wird das Design der Benutzerschnittstellen für Mensch-Roboter Teams dargestellt und Prinzipien für Teleoperation-Systeme und Benutzerschnittstellen erarbeitet. Alle Studien und Ansätze werden in einem Prototypen-System implementiert und in verschiedenen Benutzertests abgesichert. Erweiterungsmöglichkeiten zum Einbinden von 3D Sensordaten und die Darstellung auf Stereovisualisierungssystemen werden gezeigt. N2 - This work deals with teams in teleoperation scenarios, where one human team partner (supervisor) guides and controls multiple remote entities (either robotic or human) and coordinates their tasks. Such a team needs an appropriate infrastructure for sharing information and commands. The robots need to have a level of autonomy, which matches the assigned task. The humans in the team have to be provided with autonomous support, e.g. for information integration. Design and capabilities of the human-robot interfaces will strongly influence the performance of the team as well as the subjective feeling of the human team partners. Here, it is important to elaborate the information demand as well as how information is presented. Such human-robot systems need to allow the supervisor to gain an understanding of what is going on in the remote environment (situation awareness) by providing the necessary information. This includes achieving fast assessment of the robot´s or remote human´s state. Processing, integration and organization of data as well as suitable autonomous functions support decision making and task allocation and help to decrease the workload in this multi-entity teleoperation task. Interaction between humans and robots is improved by a common world model and a responsive system and robots. The remote human profits from a simplified user interface providing exactly the information needed for the actual task at hand. The topic of this thesis is the investigation of such teleoperation interfaces in human-robot teams, especially for high-risk, time-critical, and dangerous tasks. The aim is to provide a suitable human-robot team structure as well as analyze the demands on the user interfaces. On one side, it will be looked on the theoretical background (model, interactions, and information demand). On the other side, real implementations for system, robots, and user interfaces are presented and evaluated as testbeds for the claimed requirements. Rescue operations, more precisely fire-fighting, was chosen as an exemplary application scenario for this work. The challenges in such scenarios are high (highly dynamic environments, high risk, time criticality etc.) and it can be expected that results can be transferred to other applications, which have less strict requirements. The present work contributes to the introduction of human-robot teams in task-oriented scenarios, such as working in high risk domains, e.g. fire-fighting. It covers the theoretical background of the required system, the analysis of related human factors concepts, as well as discussions on implementation. An emphasis is placed on user interfaces, their design, requirements and user testing, as well as on the used techniques (three-dimensional sensor data representation, mixed reality, and user interface design guidelines). Further, the potential integration of 3D sensor data as well as the visualization on stereo visualization systems is introduced. T3 - Forschungsberichte in der Robotik = Research Notes in Robotics - 1 KW - Robotik KW - Mobiler Roboter KW - Autonomer Roboter KW - Mensch-Maschine-System KW - Mensch-Maschine-Schnittstelle KW - Mixed Reality KW - Mensch-Roboter-Interaktion KW - Situationsbewusstsein KW - Teleoperation KW - Benutzerschnittstelle KW - Rettungsroboter KW - Human-Robot-Interaction KW - Situation Awareness KW - Teleoperation KW - User Interface KW - Search-and-Rescue Y1 - 2008 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-36351 SN - 978-3-923959-57-0 N1 - Zugl. gedruckte Ausgabe: ISBN: 978-3-923959-54-9 (Paper) ER - TY - JOUR A1 - Ankenbrand, Markus J. A1 - Weber, Lorenz A1 - Becker, Dirk A1 - Förster, Frank A1 - Bemm, Felix T1 - TBro: visualization and management of de novo transcriptomes JF - Database N2 - RNA sequencing (RNA-seq) has become a powerful tool to understand molecular mechanisms and/or developmental programs. It provides a fast, reliable and cost-effective method to access sets of expressed elements in a qualitative and quantitative manner. Especially for non-model organisms and in absence of a reference genome, RNA-seq data is used to reconstruct and quantify transcriptomes at the same time. Even SNPs, InDels, and alternative splicing events are predicted directly from the data without having a reference genome at hand. A key challenge, especially for non-computational personnal, is the management of the resulting datasets, consisting of different data types and formats. Here, we present TBro, a flexible de novo transcriptome browser, tackling this challenge. TBro aggregates sequences, their annotation, expression levels as well as differential testing results. It provides an easy-to-use interface to mine the aggregated data and generate publication-ready visualizations. Additionally, it supports users with an intuitive cart system, that helps collecting and analysing biological meaningful sets of transcripts. TBro’s modular architecture allows easy extension of its functionalities in the future. Especially, the integration of new data types such as proteomic quantifications or array-based gene expression data is straightforward. Thus, TBro is a fully featured yet flexible transcriptome browser that supports approaching complex biological questions and enhances collaboration of numerous researchers. KW - database Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-147954 VL - 2016 ER - TY - JOUR A1 - Lesch, Veronika A1 - König, Maximilian A1 - Kounev, Samuel A1 - Stein, Anthony A1 - Krupitzer, Christian T1 - Tackling the rich vehicle routing problem with nature-inspired algorithms JF - Applied Intelligence N2 - In the last decades, the classical Vehicle Routing Problem (VRP), i.e., assigning a set of orders to vehicles and planning their routes has been intensively researched. As only the assignment of order to vehicles and their routes is already an NP-complete problem, the application of these algorithms in practice often fails to take into account the constraints and restrictions that apply in real-world applications, the so called rich VRP (rVRP) and are limited to single aspects. In this work, we incorporate the main relevant real-world constraints and requirements. We propose a two-stage strategy and a Timeline algorithm for time windows and pause times, and apply a Genetic Algorithm (GA) and Ant Colony Optimization (ACO) individually to the problem to find optimal solutions. Our evaluation of eight different problem instances against four state-of-the-art algorithms shows that our approach handles all given constraints in a reasonable time. KW - logistics KW - rich vehicle routing problem KW - ant-colony optimization KW - genetic algorithm KW - real-world application Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-268942 SN - 1573-7497 VL - 52 ER - TY - THES A1 - Travers, Stephen T1 - Structural Properties of NP-Hard Sets and Uniform Characterisations of Complexity Classes T1 - Strukturelle Eigenschaften NP-harter Mengen und uniforme Charakterisierungen von Komplexitätsklassen N2 - This thesis is devoted to the study of computational complexity theory, a branch of theoretical computer science. Computational complexity theory investigates the inherent difficulty in designing efficient algorithms for computational problems. By doing so, it analyses the scalability of computational problems and algorithms and places practical limits on what computers can actually accomplish. Computational problems are categorised into complexity classes. Among the most important complexity classes are the class NP and the subclass of NP-complete problems, which comprises many important optimisation problems in the field of operations research. Moreover, with the P-NP-problem, the class NP represents the most important unsolved question in computer science. The first part of this thesis is devoted to the study of NP-complete-, and more generally, NP-hard problems. It aims at improving our understanding of this important complexity class by systematically studying how altering NP-hard sets affects their NP-hardness. This research is related to longstanding open questions concerning the complexity of unions of disjoint NP-complete sets, and the existence of sparse NP-hard sets. The second part of the thesis is also dedicated to complexity classes but takes a different perspective: In a sense, after investigating the interior of complexity classes in the first part, the focus shifts to the description of complexity classes and thereby to the exterior in the second part. It deals with the description of complexity classes through leaf languages, a uniform framework which allows us to characterise a great variety of important complexity classes. The known concepts are complemented by a new leaf-language model. To a certain extent, this new approach combines the advantages of the known models. The presented results give evidence that the connection between the theory of formal languages and computational complexity theory might be closer than formerly known. N2 - Diese Dissertation behandelt die Komplexitätstheorie, ein zentrales Teilgebiet der Theoretischen Informatik. Die Komplexitätstheorie untersucht die inhärente Schwierigkeit, effiziente Algorithmen für Berechnungsprobleme zu entwerfen. Sie analysiert die Skalierbarkeit von Berechnungsproblemen und Algorithmen und stellt grundsätzliche Grenzen für die Leistungsfähigkeit von Computern auf. Berechnungsprobleme werden in Komplexitätsklassen kategorisiert. Dabei spielen die Klasse NP und die in ihr enthaltene Klasse der NP-vollständigen Probleme eine wichtige Rolle. Letztere umfasst zahlreiche in der Praxis bedeutsame Probleme aus dem Bereich Operations Research. Darüber hinaus repräsentiert die Klasse NP mit dem P-NP Problem gleichfalls das wichtigste ungelöste Problem in der Informatik. Der erste Teil dieser Dissertation ist der Untersuchung NP-vollständiger und noch allgemeiner, NP-harter Mengen gewidmet. Durch eine systematische Untersuchung der Frage, wie sich partielle Modifikationen von Mengen auf deren NP-Härte auswirken, soll das Verständnis dieser wichtigen Komplexitätsklasse verbessert werden. Die Untersuchungen in diesem Bereich stehen in enger Verbindung zu wichtigen ungelösten Fragen, wie beispielsweise der Frage nach der Komplexität von Vereinigungen disjunkter NP-vollständiger Mengen und darüber hinaus der Frage nach der Existenz dünner, NP-harter Mengen. Der zweite Teil der Dissertation beschäftigt sich ebenfalls mit der Komplexitätstheorie, nimmt dabei aber eine andere Perspektive ein: Während im ersten Teil mit der Untersuchung struktureller Eigenschaften innere Aspekte von Komplexitätsklassen im Vordergrund stehen dreht es sich im zweiten Teil um die Beschreibung von Komplexitätsklassen. Dabei werden so genannte Blattsprachen verwendet, welche einen uniformen Beschreibungsmechanismus für Komplexitätsklassen darstellen. Die bestehenden Blattsprachen-Konzepte werden durch einen neuen Ansatz ergänzt, der in einem gewissen Sinne die Vorteile der bekannten Ansätze vereint. Die erzielten Ergebnisse sind Evidenz dafür, dass die Verbindung zwischen der Theorie der formalen Sprachen und der Komplexitätstheorie noch enger ist als bislang vermutet. KW - Berechnungskomplexität KW - Komplexität KW - Theoretische Informatik KW - NP-Vollständigkeit KW - Strukturelle Komplexität KW - NP-complete sets KW - structural complexity Y1 - 2007 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-27124 ER - TY - RPRT A1 - Savvidis, Dimitrios A1 - Roth, Robert A1 - Tutsch, Dietmar T1 - Static Evaluation of a Wheel-Topology for an SDN-based Network Usecase T2 - Würzburg Workshop on Next-Generation Communication Networks (WueWoWas'22) N2 - The increased occurrence of Software-Defined-Networking (SDN) not only improves the dynamics and maintenance of network architectures, but also opens up new use cases and application possibilities. Based on these observations, we propose a new network topology consisting of a star and a ring topology. This hybrid topology will be called wheel topology in this paper. We have considered the static characteristics of the wheel topology and compare them with known other topologies. KW - Datennetz KW - SDN KW - topology KW - wheel Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-280715 ER - TY - JOUR A1 - Wick, Christoph A1 - Hartelt, Alexander A1 - Puppe, Frank T1 - Staff, symbol and melody detection of Medieval manuscripts written in square notation using deep Fully Convolutional Networks JF - Applied Sciences N2 - Even today, the automatic digitisation of scanned documents in general, but especially the automatic optical music recognition (OMR) of historical manuscripts, still remains an enormous challenge, since both handwritten musical symbols and text have to be identified. This paper focuses on the Medieval so-called square notation developed in the 11th–12th century, which is already composed of staff lines, staves, clefs, accidentals, and neumes that are roughly spoken connected single notes. The aim is to develop an algorithm that captures both the neumes, and in particular its melody, which can be used to reconstruct the original writing. Our pipeline is similar to the standard OMR approach and comprises a novel staff line and symbol detection algorithm based on deep Fully Convolutional Networks (FCN), which perform pixel-based predictions for either staff lines or symbols and their respective types. Then, the staff line detection combines the extracted lines to staves and yields an F\(_1\) -score of over 99% for both detecting lines and complete staves. For the music symbol detection, we choose a novel approach that skips the step to identify neumes and instead directly predicts note components (NCs) and their respective affiliation to a neume. Furthermore, the algorithm detects clefs and accidentals. Our algorithm predicts the symbol sequence of a staff with a diplomatic symbol accuracy rate (dSAR) of about 87%, which includes symbol type and location. If only the NCs without their respective connection to a neume, all clefs and accidentals are of interest, the algorithm reaches an harmonic symbol accuracy rate (hSAR) of approximately 90%. In general, the algorithm recognises a symbol in the manuscript with an F\(_1\) -score of over 96%. KW - optical music recognition KW - historical document analysis KW - medieval manuscripts KW - neume notation KW - fully convolutional neural networks Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-197248 SN - 2076-3417 VL - 9 IS - 13 ER - TY - JOUR A1 - Wienrich, Carolin A1 - Komma, Philipp A1 - Vogt, Stephanie A1 - Latoschik, Marc E. T1 - Spatial Presence in Mixed Realities – Considerations About the Concept, Measures, Design, and Experiments JF - Frontiers in Virtual Reality N2 - Plenty of theories, models, measures, and investigations target the understanding of virtual presence, i.e., the sense of presence in immersive Virtual Reality (VR). Other varieties of the so-called eXtended Realities (XR), e.g., Augmented and Mixed Reality (AR and MR) incorporate immersive features to a lesser degree and continuously combine spatial cues from the real physical space and the simulated virtual space. This blurred separation questions the applicability of the accumulated knowledge about the similarities of virtual presence and presence occurring in other varieties of XR, and corresponding outcomes. The present work bridges this gap by analyzing the construct of presence in mixed realities (MR). To achieve this, the following presents (1) a short review of definitions, dimensions, and measurements of presence in VR, and (2) the state of the art views on MR. Additionally, we (3) derived a working definition of MR, extending the Milgram continuum. This definition is based on entities reaching from real to virtual manifestations at one time point. Entities possess different degrees of referential power, determining the selection of the frame of reference. Furthermore, we (4) identified three research desiderata, including research questions about the frame of reference, the corresponding dimension of transportation, and the dimension of realism in MR. Mainly the relationship between the main aspects of virtual presence of immersive VR, i.e., the place-illusion, and the plausibility-illusion, and of the referential power of MR entities are discussed regarding the concept, measures, and design of presence in MR. Finally, (5) we suggested an experimental setup to reveal the research heuristic behind experiments investigating presence in MR. The present work contributes to the theories and the meaning of and approaches to simulate and measure presence in MR. We hypothesize that research about essential underlying factors determining user experience (UX) in MR simulations and experiences is still in its infancy and hopes this article provides an encouraging starting point to tackle related questions. KW - mixed reality KW - virtual-reality-continuum KW - spatial presence KW - place-illusion KW - plausibility-illusion KW - transportation KW - realism Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-260328 VL - 2 ER - TY - THES A1 - Hopfner, Marbod T1 - Source Code Analysis, Management, and Visualization for PROLOG T1 - Quelltextanalyse, Verwaltung und Visualisierung für Prolog N2 - This thesis deals with the management and analysis of source code, which is represented in XML. Using the elementary methods of the XML repository, the XML source code representation is accessed, changed, updated, and saved. We reason about the source code, refactor source code and we visualize dependency graphs for call analysis. The visualized dependencies between files, modules, or packages are used to structure the source code in order to get a system, which is easily to comprehend, to modify and to complete. Sophisticated methods have been developed to slice the source code in order to obtain a working package of a large system, containing only a specific functionality. The basic methods, on which the visualizations and analyses are built on can be changed like changing a plug-in. The visualization methods can be reused in order to handle arbitrary source code representations, e.g., JAML, PHPML, PROLOGML. Dependencies of other context can be visualized, too, e.g., ER diagrams, or website references. The tool SCAV supports source code visualization and analyzing methods. N2 - Diese Dissertation beschäftigt sich mit der Verwaltung und Analyse von Quellcode, der in XML repräsentiert ist. Es werden Abhängigkeitsgraphen visualisiert um ein Projekt leichter verstehen zu können. Es kann auch ein Slice einer bestimmten Methode aus dem Projekt erstellt werden. Die Programmierung ist in Modulen gemacht, so dass die Funktionalität leicht erweitert werden kann. KW - Refactoring KW - Software Engineering KW - Refactoring KW - Call Graph KW - Dependency Graph KW - Abhängigskeitsgraph KW - Software Engineering KW - Source Code Visualization KW - Refactoring KW - Call Graph KW - Dependency Graph KW - Abhängigskeitsgraph KW - Software Engineering KW - Source Code Visualization Y1 - 2008 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-36300 ER - TY - JOUR A1 - Davidson, Padraig A1 - Düking, Peter A1 - Zinner, Christoph A1 - Sperlich, Billy A1 - Hotho, Andreas T1 - Smartwatch-Derived Data and Machine Learning Algorithms Estimate Classes of Ratings of Perceived Exertion in Runners: A Pilot Study JF - Sensors N2 - The rating of perceived exertion (RPE) is a subjective load marker and may assist in individualizing training prescription, particularly by adjusting running intensity. Unfortunately, RPE has shortcomings (e.g., underreporting) and cannot be monitored continuously and automatically throughout a training sessions. In this pilot study, we aimed to predict two classes of RPE (≤15 “Somewhat hard to hard” on Borg’s 6–20 scale vs. RPE >15 in runners by analyzing data recorded by a commercially-available smartwatch with machine learning algorithms. Twelve trained and untrained runners performed long-continuous runs at a constant self-selected pace to volitional exhaustion. Untrained runners reported their RPE each kilometer, whereas trained runners reported every five kilometers. The kinetics of heart rate, step cadence, and running velocity were recorded continuously ( 1 Hz ) with a commercially-available smartwatch (Polar V800). We trained different machine learning algorithms to estimate the two classes of RPE based on the time series sensor data derived from the smartwatch. Predictions were analyzed in different settings: accuracy overall and per runner type; i.e., accuracy for trained and untrained runners independently. We achieved top accuracies of 84.8 % for the whole dataset, 81.8 % for the trained runners, and 86.1 % for the untrained runners. We predict two classes of RPE with high accuracy using machine learning and smartwatch data. This approach might aid in individualizing training prescriptions. KW - artificial intelligence KW - endurance KW - exercise intensity KW - precision training KW - prediction KW - wearable Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-205686 SN - 1424-8220 VL - 20 IS - 9 ER - TY - THES A1 - Sun, Kaipeng T1 - Six Degrees of Freedom Object Pose Estimation with Fusion Data from a Time-of-flight Camera and a Color Camera T1 - 6DOF Posenschätzung durch Datenfusion einer Time-of-Flight-Kamera und einer Farbkamera N2 - Object six Degrees of Freedom (6DOF) pose estimation is a fundamental problem in many practical robotic applications, where the target or an obstacle with a simple or complex shape can move fast in cluttered environments. In this thesis, a 6DOF pose estimation algorithm is developed based on the fused data from a time-of-flight camera and a color camera. The algorithm is divided into two stages, an annealed particle filter based coarse pose estimation stage and a gradient decent based accurate pose optimization stage. In the first stage, each particle is evaluated with sparse representation. In this stage, the large inter-frame motion of the target can be well handled. In the second stage, the range data based conventional Iterative Closest Point is extended by incorporating the target appearance information and used for calculating the accurate pose by refining the coarse estimate from the first stage. For dealing with significant illumination variations during the tracking, spherical harmonic illumination modeling is investigated and integrated into both stages. The robustness and accuracy of the proposed algorithm are demonstrated through experiments on various objects in both indoor and outdoor environments. Moreover, real-time performance can be achieved with graphics processing unit acceleration. N2 - Die 6DOF Posenschätzung von Objekten ist ein fundamentales Problem in vielen praktischen Robotikanwendungen, bei denen sich ein Ziel- oder Hindernisobjekt, einfacher oder komplexer Form, schnell in einer unstrukturierten schwierigen Umgebung bewegt. In dieser Forschungsarbeit wird zur Lösung des Problem ein 6DOF Posenschätzer entwickelt, der auf der Fusion von Daten einer Time-of-Flight-Kamera und einer Farbkamera beruht. Der Algorithmus ist in zwei Phasen unterteilt, ein Annealed Partikel-Filter bestimmt eine grobe Posenschätzung, welche mittels eines Gradientenverfahrens in einer zweiten Phase optimiert wird. In der ersten Phase wird jeder Partikel mittels sparse represenation ausgewertet, auf diese Weise kann eine große Inter-Frame-Bewegung des Zielobjektes gut behandelt werden. In der zweiten Phase wird die genaue Pose des Zielobjektes mittels des konventionellen, auf Entfernungsdaten beruhenden, Iterative Closest Point-Algorithmus aus der groben Schätzung der ersten Stufe berechnet. Der Algorithmus wurde dabei erweitert, so dass auch Informationen über das äußere Erscheinungsbild des Zielobjektes verwendet werden. Zur Kompensation von signifikanten Beleuchtungsschwankungen während des Trackings, wurde eine Modellierung der Ausleuchtung mittels Kugelflächenfunktionen erforscht und in beide Stufen der Posenschätzung integriert. Die Leistungsfähigkeit, Robustheit und Genauigkeit des entwickelten Algorithmus wurde in Experimenten im Innen- und Außenbereich mit verschiedenen Zielobjekten gezeigt. Zudem konnte gezeigt werden, dass die Schätzung mit Hilfe von Grafikprozessoren in Echtzeit möglich ist. T3 - Forschungsberichte in der Robotik = Research Notes in Robotics - 10 KW - Mustererkennung KW - Maschinelles Sehen KW - Sensor KW - 3D Vision KW - 6DOF Pose Estimation KW - Visual Tracking KW - Pattern Recognition KW - Computer Vision KW - 3D Sensor Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-105089 SN - 978-3-923959-97-6 ER - TY - JOUR A1 - Baier, Pablo A. A1 - Baier-Saip, Jürgen A. A1 - Schilling, Klaus A1 - Oliveira, Jauvane C. T1 - Simulator for Minimally Invasive Vascular Interventions: Hardware and Software JF - Presence N2 - In the present work, a simulation system is proposed that can be used as an educational tool by physicians in training basic skills of minimally invasive vascular interventions. In order to accomplish this objective, initially the physical model of the wire proposed by Konings has been improved. As a result, a simpler and more stable method was obtained to calculate the equilibrium configuration of the wire. In addition, a geometrical method is developed to perform relaxations. It is particularly useful when the wire is hindered in the physical method because of the boundary conditions. Then a recipe is given to merge the physical and the geometrical methods, resulting in efficient relaxations. Moreover, tests have shown that the shape of the virtual wire agrees with the experiment. The proposed algorithm allows real-time executions, and furthermore, the hardware to assemble the simulator has a low cost. KW - simulation system KW - educational tool KW - invasive vascular interventions Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-140580 SN - 1531-3263 VL - 25 IS - 2 ER - TY - THES A1 - Baier, Pablo A. T1 - Simulator for Minimally Invasive Vascular Interventions: Hardware and Software T1 - VR-Simulation für das Training von Herzkathetereingriffen: Hard- und Softwarelösung N2 - A complete simulation system is proposed that can be used as an educational tool by physicians in training basic skills of Minimally Invasive Vascular Interventions. In the first part, a surface model is developed to assemble arteries having a planar segmentation. It is based on Sweep Surfaces and can be extended to T- and Y-like bifurcations. A continuous force vector field is described, representing the interaction between the catheter and the surface. The computation time of the force field is almost unaffected when the resolution of the artery is increased. The mechanical properties of arteries play an essential role in the study of the circulatory system dynamics, which has been becoming increasingly important in the treatment of cardiovascular diseases. In Virtual Reality Simulators, it is crucial to have a tissue model that responds in real time. In this work, the arteries are discretized by a two dimensional mesh and the nodes are connected by three kinds of linear springs. Three tissue layers (Intima, Media, Adventitia) are considered and, starting from the stretch-energy density, some of the elasticity tensor components are calculated. The physical model linearizes and homogenizes the material response, but it still contemplates the geometric nonlinearity. In general, if the arterial stretch varies by 1% or less, then the agreement between the linear and nonlinear models is trustworthy. In the last part, the physical model of the wire proposed by Konings is improved. As a result, a simpler and more stable method is obtained to calculate the equilibrium configuration of the wire. In addition, a geometrical method is developed to perform relaxations. It is particularly useful when the wire is hindered in the physical method because of the boundary conditions. The physical and the geometrical methods are merged, resulting in efficient relaxations. Tests show that the shape of the virtual wire agrees with the experiment. The proposed algorithm allows real-time executions and the hardware to assemble the simulator has a low cost. N2 - Es wird ein vollständiges Simulationssystem entwickelt, das von Ärzten als Lehrmittel zur Ausbildung grundlegender Fertigkeiten bei Herzkathetereingriffen eingesetzt werden kann. Im ersten Teil wird ein Oberflächenmodell zur Erstellung von Arterien mit planarer Segmentierung entwickelt. Im zweiten Teil werden die Arterien durch ein zweidimensionales Netz diskretisiert, die Knoten werden durch drei Arten linearer Federn verbunden und ausgehend von einer Dehnungsenergie-Dichte-Funktion werden einige Komponenten des Elastizitätstensors berechnet. Im letzten Teil wird das von anderen Autoren vorgeschlagene physikalische Modell des Drahtes verbessert und eine neue geometrische Methode entwickelt. Der vorgeschlagene Algorithmus ermöglicht Echtzeit-Ausführungen. Die Hardware des Simulators hat geringe Herstellungskosten. T3 - Forschungsberichte in der Robotik = Research Notes in Robotics - 15 KW - Computersimulation KW - Simulator KW - Arterie KW - Elastizitätstensor KW - Herzkatheter KW - Minimally invasive vascular intervention KW - Wire relaxation KW - Artery KW - Elasticity tensor KW - Stiffness KW - educational tool KW - Elastizitätstensor KW - Herzkathetereingriff KW - Software KW - Hardware Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-161190 SN - 978-3-945459-22-5 ER -