TY  - THES
A1  - Atzmüller, Martin
T1  - Knowledge-Intensive Subgroup Mining - Techniques for Automatic and Interactive Discovery
T1  - Wissensintensive Subgruppenentdeckung – Automatische und Interaktive Entdeckungsmethoden
N2  - Data mining has proved its significance in various domains and applications. As an important subfield of the general data mining task, subgroup mining can be used, e.g., for marketing purposes in business domains, or for quality profiling and analysis in medical domains. The goal is to efficiently discover novel, potentially useful and ultimately interesting knowledge. However, in real-world situations these requirements often cannot be fulfilled, e.g., if the applied methods do not scale for large data sets, if too many results are presented to the user, or if many of the discovered patterns are already known to the user. This thesis proposes a combination of several techniques in order to cope with the sketched problems: We discuss automatic methods, including heuristic and exhaustive approaches, and especially present the novel SD-Map algorithm for exhaustive subgroup discovery that is fast and effective. For an interactive approach we describe techniques for subgroup introspection and analysis, and we present advanced visualization methods, e.g., the zoomtable that directly shows the most important parameters of a subgroup and that can be used for optimization and exploration. We also describe various visualizations for subgroup comparison and evaluation in order to support the user during these essential steps. Furthermore, we propose to include possibly available background knowledge that is easy to formalize into the mining process. We can utilize the knowledge in many ways: To focus the search process, to restrict the search space, and ultimately to increase the efficiency of the discovery method. We especially present background knowledge to be applied for filtering the elements of the problem domain, for constructing abstractions, for aggregating values of attributes, and for the post-processing of the discovered set of patterns. Finally, the techniques are combined into a knowledge-intensive process supporting both automatic and interactive methods for subgroup mining. The practical significance of the proposed approach strongly depends on the available tools. We introduce the VIKAMINE system as a highly-integrated environment for knowledge-intensive active subgroup mining. Also, we present an evaluation consisting of two parts: With respect to objective evaluation criteria, i.e., comparing the efficiency and the effectiveness of the subgroup discovery methods, we provide an experimental evaluation using generated data. For that task we present a novel data generator that allows a simple and intuitive specification of the data characteristics. The results of the experimental evaluation indicate that the novel SD-Map method outperforms the other described algorithms using data sets similar to the intended application concerning the efficiency, and also with respect to precision and recall for the heuristic methods. Subjective evaluation criteria include the user acceptance, the benefit of the approach, and the interestingness of the results. We present five case studies utilizing the presented techniques: The approach has been successfully implemented in medical and technical applications using real-world data sets. The method was very well accepted by the users that were able to discover novel, useful, and interesting knowledge.
N2  - Data Mining wird mit großem Erfolg in vielen Domänen angewandt. Subgruppenentdeckung als wichtiges Teilgebiet des Data Mining kann zum Beispiel gut im Marketing, oder zur Qualitätskontrolle und Analyse in medizinischen Domänen eingesetzt werden. Das allgemeine Ziel besteht darin, potentiell nützliches and letztendlich interessantes Wissen zu entdecken. Jedoch können diese Anforderungen im praktischen Einsatz oft nicht erfüllt werden, etwa falls die eingesetzten Methoden eine schlechte Skalierbarkeit für größere Datensätze aufweisen, falls dem Benutzer zu viele Ergebnisse präsentiert werden, oder falls der Anwender viele der gefundenen Subgruppen-Muster schon kennt. Diese Arbeit stellt eine Kombination von automatischen und interaktiven Techniken vor, um mit den genannten Problemen besser umgehen zu können: Es werden automatische heuristische und vollständige Subgruppenentdeckungs-Verfahren diskutiert, und insbesondere der neuartige SD-Map Algorithmus zur vollständigen Subgruppenentdeckung vorgestellt der sowohl schnell als auch effektiv ist. Bezüglich der interaktiven Techniken werden Methoden zur Subgruppen-Introspektion und Analyse, und fortgeschrittene Visualisierungstechniken vorgestellt, beispielsweise die Zoomtable, die die für die Subgruppenentdeckung wichtigsten Parameter direkt visualisiert und zur Optimierung und Exploration eingesetzt werden kann. Zusätzlich werden verschiedene Visualisierungen zum Vergleich und zur Evaluation von Subgruppen beschrieben um den Benutzer bei diesen essentiellen Schritten zu unterstützen. Weiterhin wird leicht zu formalisierendes Hintergrundwissen vorgestellt, das im Subgruppenentdeckungsprozess in vielfältiger Weise eingesetzt werden kann: Um den Entdeckungsprozess zu fokussieren, den Suchraum einzuschränken, und letztendlich die Effizienz der Entdeckungsmethode zu erhöhen. Insbesondere wird Hintergrundwissen eingeführt, um die Elemente der Anwendungsdomäne zu filtern, um geeignete Abstraktionen zu definieren, Werte zusammenzufassen, und die gefundenen Subgruppenmuster nachzubearbeiten. Schließlich werden diese Techniken in einen wissensintensiven Prozess integriert, der sowohl automatische als auch interaktive Methoden zur Subgruppenentdeckung einschließt. Die praktische Bedeutung des vorgestellten Ansatzes hängt stark von den verfügbaren Werkzeugen ab. Dazu wird das VIKAMINE System als hochintegrierte Umgebung für die wissensintensive aktive Subgruppenentdeckung präsentiert. Die Evaluation des Ansatzes besteht aus zwei Teilen: Hinsichtlich einer Evaluation von Effizienz und Effektivität der Verfahren wird eine experimentelle Evaluation mit synthetischen Daten vorgestellt. Für diesen Zweck wird ein neuartiger in der Arbeit entwickelter Datengenerator angewandt, der eine einfache und intuitive Spezifikation der Datencharakteristiken erlaubt. Für die Evaluation des Ansatzes wurden Daten erzeugt, die ähnliche Charakteristiken aufweisen wie die Daten des angestrebten Einsatzbereichs. Die Ergebnisse der Evaluation zeigen, dass der neuartige SD-Map Algorithmus den anderen in der Arbeit beschriebenen Standard-Algorithmen überlegen ist. Sowohl hinsichtlich der Effizienz, als auch von Precision/Recall bezogen auf die heuristischen Algorithmen bietet SD-Map deutliche Vorteile. Subjektive Evaluationskriterien sind durch die Benutzerakzeptanz, den Nutzen des Ansatzes, und die Interessantheit der Ergebnisse gegeben. Es werden fünf Fallstudien für den Einsatz der vorgestellten Techniken beschrieben: Der Ansatz wurde in medizinischen und technischen Anwendungen mit realen Daten eingesetzt. Dabei wurde er von den Benutzern sehr gut angenommen, und im praktischen Einsatz konnte neuartiges, nützliches, und interessantes Wissen entdeckt werden.
KW  - Data Mining
KW  - Algorithmus
KW  - Visualisierung
KW  - Subgruppenentdeckung
KW  - Hintergrundwissen
KW  - Wissensendeckung
KW  - Data Mining
KW  - Visualisierung
KW  - Subgroup Mining
KW  - Background Knowledge
KW  - Knowledge Discovery
KW  - Data Mining
KW  - Visualization
Y1  - 2006
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-21004
ER  - 
TY  - JOUR
A1  - Oberdörfer, Sebastian
A1  - Latoschik, Marc Erich
T1  - Knowledge encoding in game mechanics: transfer-oriented knowledge learning in desktop-3D and VR
JF  - International Journal of Computer Games Technology
N2  - Affine Transformations (ATs) are a complex and abstract learning content. Encoding the AT knowledge in Game Mechanics (GMs) achieves a repetitive knowledge application and audiovisual demonstration. Playing a serious game providing these GMs leads to motivating and effective knowledge learning. Using immersive Virtual Reality (VR) has the potential to even further increase the serious game’s learning outcome and learning quality. This paper compares the effectiveness and efficiency of desktop-3D and VR in respect to the achieved learning outcome. Also, the present study analyzes the effectiveness of an enhanced audiovisual knowledge encoding and the provision of a debriefing system. The results validate the effectiveness of the knowledge encoding in GMs to achieve knowledge learning. The study also indicates that VR is beneficial for the overall learning quality and that an enhanced audiovisual encoding has only a limited effect on the learning outcome.
KW  - games
Y1  - 2019
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-201159
VL  - 2019
ER  - 
TY  - JOUR
A1  - Fathy, Moustafa
A1  - Darwish, Mostafa A.
A1  - Abdelhamid, Al-Shaimaa M.
A1  - Alrashedy, Gehad M.
A1  - Othman, Othman Ali
A1  - Naseem, Muhammad
A1  - Dandekar, Thomas
A1  - Othman, Eman M.
T1  - Kinetin ameliorates cisplatin-induced hepatotoxicity and lymphotoxicity via attenuating oxidative damage, cell apoptosis and inflammation in rats
JF  - Biomedicines
N2  - Though several previous studies reported the in vitro and in vivo antioxidant effect of kinetin (Kn), details on its action in cisplatin-induced toxicity are still scarce. In this study we evaluated, for the first time, the effects of kinetin in cisplatin (cp)- induced liver and lymphocyte toxicity in rats. Wistar male albino rats were divided into nine groups: (i) the control (C), (ii) groups 2,3 and 4, which received 0.25, 0.5 and 1 mg/kg kinetin for 10 days; (iii) the cisplatin (cp) group, which received a single intraperitoneal injection of CP (7.0 mg/kg); and (iv) groups 6, 7, 8 and 9, which received, for 10 days, 0.25, 0.5 and 1 mg/kg kinetin or 200 mg/kg vitamin C, respectively, and Cp on the fourth day. CP-injected rats showed a significant impairment in biochemical, oxidative stress and inflammatory parameters in hepatic tissue and lymphocytes. PCR showed a profound increase in caspase-3, and a significant decline in AKT gene expression. Intriguingly, Kn treatment restored the biochemical, redox status and inflammatory parameters. Hepatic AKT and caspase-3 expression as well as CD95 levels in lymphocytes were also restored. In conclusion, Kn mitigated oxidative imbalance, inflammation and apoptosis in CP-induced liver and lymphocyte toxicity; therefore, it can be considered as a promising therapy.
KW  - cisplatin
KW  - hepatotoxicity
KW  - lymphotoxicity
KW  - oxidative stress
KW  - AKT
KW  - CD95
KW  - caspase-3
Y1  - 2022
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-281686
SN  - 2227-9059
VL  - 10
IS  - 7
ER  - 
TY  - JOUR
A1  - Kempf, Sebastian
A1  - Krug, Markus
A1  - Puppe, Frank
T1  - KIETA: Key-insight extraction from scientific tables
JF  - Applied Intelligence
N2  - An important but very time consuming part of the research process is literature review. An already large and nevertheless growing ground set of publications as well as a steadily increasing publication rate continue to worsen the situation. Consequently, automating this task as far as possible is desirable. Experimental results of systems are key-insights of high importance during literature review and usually represented in form of tables. Our pipeline KIETA exploits these tables to contribute to the endeavor of automation by extracting them and their contained knowledge from scientific publications. The pipeline is split into multiple steps to guarantee modularity as well as analyzability, and agnosticim regarding the specific scientific domain up until the knowledge extraction step, which is based upon an ontology. Additionally, a dataset of corresponding articles has been manually annotated with information regarding table and knowledge extraction. Experiments show promising results that signal the possibility of an automated system, while also indicating limits of extracting knowledge from tables without any context.
KW  - table extraction
KW  - table understanding
KW  - ontology
KW  - key-insight extraction
KW  - information extraction
Y1  - 2023
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-324180
SN  - 0924-669X
VL  - 53
IS  - 8
ER  - 
TY  - THES
A1  - Fehler, Manuel
T1  - Kalibrierung Agenten-basierter Simulationen
T1  - Calibration of Agent-based Simulations
N2  - In der vorliegenden Arbeit wird das Problem der Kalibrierung Agenten-basierter Simulationen (ABS) behandelt, also das Problem, die Parameterwerte eines Agenten-basierten Simulationsmodells so einzustellen, dass valides Simulationsverhalten erreicht wird. Das Kalibrierungsproblem für Simulationen an sich ist nicht neu und ist im Rahmen klassischer Simulationsparadigmen, wie z.B. der Makro-Simulation, fester Bestandteil der Forschung. Im Vergleich zu den dort betrachteten Kalibrierungsproblemen zeichnet sich das Kalibrierungsproblem für ABS jedoch durch eine Reihe zusätzlicher Herausforderungen aus, welche die direkte Anwendung existierender Kalibrierungsverfahren in begrenzter Zeit erschweren, bzw. nicht mehr sinnvoll zulassen. Die Lösung dieser Probleme steht im Zentrum dieser Dissertation: Das Ziel besteht darin, den Nutzer bei der Kalibrierung von ABS auf der Basis von unzureichenden, potentiell fehlerhaften Daten und Wissen zu unterstützen. Dabei sollen drei Hauptprobleme gelöst werden: 1)Vereinfachung der Kalibrierung großer Agenten-Parametermengen auf der Mikro- Ebene in Agenten-basierten Simulationen durch Ausnutzung der spezifischen Struktur von ABS (nämlich dem Aufbau aus einer Menge von Agentenmodellen). 2)Kalibrierung Agenten-basierter Simulationen, so dass auf allen relevanten Beobachtungsebenen valides Simulationsverhalten erzeugt wird (mindestens Mikro und Makro-Ebene). Als erschwerende Randbedingung muss die Kalibrierung unter der Voraussetzung einer Makro-Mikro-Wissenslücke durchgeführt werden. 3)Kalibrierung Agenten-basierter Simulationen auf der Mikro-Ebene unter der Voraussetzung, dass zur Kalibrierung einzelner Agentenmodelle nicht ausreichend und potentiell verfälschte Daten zur Verhaltensvalidierung zur Verfügung stehen. Hierzu wird in dieser Arbeit das sogenannte Makro-Mikro-Verfahren zur Kalibrierung von Agenten-basierten Simulationen entwickelt. Das Verfahren besteht aus einem Basisverfahren, das im Verlauf der Arbeit um verschiedene Zusatzverfahren erweitert wird. Das Makro-Mikro-Verfahren und seine Erweiterungen sollen dazu dienen, die Modellkalibrierung trotz stark verrauschter Daten und eingeschränktem Wissen über die Wirkungszusammenhänge im Originalsystem geeignet zu ermöglichen und dabei den Kalibrierungsprozess zu beschleunigen: 1) Makro-Mikro-Kalibrierungsverfahren: Das in dieser Arbeit entwickelte Makro- Mikro-Verfahren unterstützt den Nutzer durch eine kombinierte Kalibrierung auf der Mikro- und der Makro-Beobachtungsebene, die gegebenenfalls durch Zwischenebenen erweitert werden kann. Der Grundgedanke des Verfahrens besteht darin, das Kalibrierungsproblem in eines auf aggregierter Verhaltensebene und eines auf der Ebene des Mikro-Agentenverhaltens aufzuteilen. Auf der Makro-Ebene wird nach validen idealen aggregierten Verhaltensmodellen (IVM) der Agenten gesucht. Auf der Mikro-Ebene wird versucht die individuellen Modelle der Agenten auf Basis des erwünschten Gesamtverhaltens und der ermittelten IVM so zu kalibrieren, das insgesamt Simulationsverhalten entsteht, das sowohl auf Mikro- als auch auf Makro-Ebene valide ist. 2) Erweiterung 1: Robuste Kalibrierung: Um den Umgang mit potentiell verrauschten Validierungskriterien (d.h. mit verrauschten Daten über ein Originalsystem, auf denen die Validierungskriterien der Simulation beruhen) und Modellteilen während der Kalibrierung von ABS zu ermöglichen, wird eine robuste Kalibrierungstechnik zur Anwendung im Makro-Mikro-Verfahren entwickelt. 3) Erweiterung 2: Kalibrierung mit Heterogenitätssuche: Als zweite Erweiterung des Makro-Mikro-Verfahrens wird ein Verfahren entwickelt, das das Problem des unklaren Detaillierungsgrades von ABS auf der Ebene der Parameterwerte adressiert. Prinzipiell kann zwar jeder Agent unterschiedliche Parameterwerte verwenden, obwohl eine geringere Heterogenität zur Erzeugung validen Verhaltens ausreichend wäre. Die entwickelte Erweiterung versucht, während der Kalibrierung, eine geeignete Heterogenitätsausprägung für die Parameterwerte der Agenten zu ermitteln. Unter einer Heterogenitätsausprägung wird dabei eine Einteilung der simulierten Agenten in Gruppen mit jeweils gleichen Parameterwerten verstanden. Die Heterogenitätssuche dient dazu, einen Kompromiss zu finden zwischen der Notwendigkeit, sehr große Parametersuchräume durchsuchen zu müssen und gleichzeitig den Suchraum so klein wie möglich halten zu wollen.
N2  - In this doctoral thesis the problem of calibrating agent-based simulations (ABS) is treated, i.e. the problem to adjust the parameter values of an agent-based simulation model to achieve valid simulation behavior. The calibration problem for simulations per se is not new and is an active part of research in the context of traditional simulation paradigms, such as the macro-simulation. Compared to the problems considered there the problems for ABS can be distinguished by several additional challenges that complicate the direct application of existing calibration procedures in a limited time, or challenges that do not allow applying existing procedures at all. The goal of this thesis is to assist the user in the calibration of ABS on the basis of incomplete and potentially noisy data or knowledge and in dealing with large amounts of parameter values if an ABS with many individual agents needs to be calibrated. The thesis covers the following three main topics: 1) Simplification of the calibration of many agent parameter values on the micro-level in ABS. This is done by exploiting the specific structure of ABS (i.e. that an ABS constitutes of a lattice of agent models). 2) Calibration of agent-based simulations, so that valid simulation behavior is created on all relevant behavior observation levels (at least micro- and macro-level). This needs to be possible without having full knowledge about how the macro observation level behavior constitutes from the modeled micro behavior. 3) Calibration of agent-based simulations on the micro-level under the constraint that only partial and potentially noisy data for testing and validation of single individual agent models is available. To achieve this the so-called “Macro-Micro Procedure” for calibrating agent-based simulations is developed. The approach consists of a basic procedure that is extended in the course of the work with various additional techniques: 1)Macro-Micro-Calibration Procedure: The Macro-Micro Procedure supports the user by applying a combined calibration on the micro and the macro-observation level, which can optionally be expanded using additional intermediate levels. The basic idea of the procedure consists of separating the calibration problem into one at the aggregate behavior level and one at the level of the micro-agent behavior. At the macro level, valid simulation behavior for ideal aggregate behavior models (IAM) of agents is being determined. At the micro level, the goal is to calibrate the models of the individual agents based on the desired overall behavior and the determined IAM from the macro level. Upon completion the simulation behavior created shall be valid both at the micro and also at a macro level. 2)Extension 1: Robust Calibration: In order to deal with potentially noisy validation criteria and model parts (i.e. with noisy data about the original system from which the validation criteria of the simulation are created) a robust calibration technique is developed that can be used as part of the Macro-Micro-Procedure. 3)Extension 2: Calibration with heterogeneity search: The second extension of the Macro-Micro-Procedure addresses the problem of an unclear level of detail on the level of the parameter values. Theoretically it is possible to use different parameter values for each individual simulated agent which leads to a huge parameter search space. Often it is however sufficient to use a lower heterogeneity in the parameter values to generate valid behavior which would allow calibration in a smaller search space. The developed extension attempts to determine such a suitable heterogeneity manifestation for the parameter values of the agents as part of the calibration process itself. A heterogeneity manifestation is performed by dividing the agents into groups of agents with homogenous parameter values. The developed heterogeneity search offers a compromise between the necessity of having to search very large parameter search spaces and the goal to keep the search space as small as possible during the calibration.
KW  - Computersimulation
KW  - Mehrebenensimulation
KW  - Autonomer Agent
KW  - Agenten-basierte Simulation
KW  - Multiagentensimulation
KW  - Parameterkalibrierung
KW  - Hierarchische Simulation
KW  - Simulation
KW  - Agent <Künstliche Intelligenz>
KW  - Calibration
KW  - Optimization
KW  - Agent-based Simulation
KW  - Multi-Agent-Simulation
Y1  - 2010
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-64762
ER  - 
TY  - JOUR
A1  - Steinhaeusser, Sophia C.
A1  - Oberdörfer, Sebastian
A1  - von Mammen, Sebastian
A1  - Latoschik, Marc Erich
A1  - Lugrin, Birgit
T1  - Joyful adventures and frightening places – designing emotion-inducing virtual environments
JF  - Frontiers in Virtual Reality
N2  - Virtual environments (VEs) can evoke and support emotions, as experienced when playing emotionally arousing games. We theoretically approach the design of fear and joy evoking VEs based on a literature review of empirical studies on virtual and real environments as well as video games’ reviews and content analyses. We define the design space and identify central design elements that evoke specific positive and negative emotions. Based on that, we derive and present guidelines for emotion-inducing VE design with respect to design themes, colors and textures, and lighting configurations. To validate our guidelines in two user studies, we 1) expose participants to 360° videos of VEs designed following the individual guidelines and 2) immerse them in a neutral, positive and negative emotion-inducing VEs combining all respective guidelines in Virtual Reality. The results support our theoretically derived guidelines by revealing significant differences in terms of fear and joy induction.
KW  - virtual reality
KW  - virtual environments
KW  - immersion
KW  - emotions
KW  - design
Y1  - 2022
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-284831
SN  - 2673-4192
VL  - 3
ER  - 
TY  - JOUR
A1  - Landeck, Maximilian
A1  - Alvarez Igarzábal, Federico
A1  - Unruh, Fabian
A1  - Habenicht, Hannah
A1  - Khoshnoud, Shiva
A1  - Wittmann, Marc
A1  - Lugrin, Jean-Luc
A1  - Latoschik, Marc Erich
T1  - Journey through a virtual tunnel: Simulated motion and its effects on the experience of time
JF  - Frontiers in Virtual Reality
N2  - This paper examines the relationship between time and motion perception in virtual environments. Previous work has shown that the perception of motion can affect the perception of time. We developed a virtual environment that simulates motion in a tunnel and measured its effects on the estimation of the duration of time, the speed at which perceived time passes, and the illusion of self-motion, also known as vection. When large areas of the visual field move in the same direction, vection can occur; observers often perceive this as self-motion rather than motion of the environment. To generate different levels of vection and investigate its effects on time perception, we developed an abstract procedural tunnel generator. The generator can simulate different speeds and densities of tunnel sections (visibly distinguishable sections that form the virtual tunnel), as well as the degree of embodiment of the user avatar (with or without virtual hands). We exposed participants to various tunnel simulations with different durations, speeds, and densities in a remote desktop and a virtual reality (VR) laboratory study. Time passed subjectively faster under high-speed and high-density conditions in both studies. The experience of self-motion was also stronger under high-speed and high-density conditions. Both studies revealed a significant correlation between the perceived passage of time and perceived self-motion. Subjects in the virtual reality study reported a stronger self-motion experience, a faster perceived passage of time, and shorter time estimates than subjects in the desktop study. Our results suggest that a virtual tunnel simulation can manipulate time perception in virtual reality. We will explore these results for the development of virtual reality applications for therapeutic approaches in our future work. This could be particularly useful in treating disorders like depression, autism, and schizophrenia, which are known to be associated with distortions in time perception. For example, the tunnel could be therapeutically applied by resetting patients’ time perceptions by exposing them to the tunnel under different conditions, such as increasing or decreasing perceived time.
KW  - passage of time
KW  - illusion of self-motion
KW  - vection
KW  - virtual tunnel
KW  - therapeutic application
KW  - virtual reality
KW  - extended reality (XR)
Y1  - 2023
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-301519
SN  - 2673-4192
VL  - 3
ER  - 
TY  - JOUR
A1  - Karl, Stefan
A1  - Dandekar, Thomas
T1  - Jimena: Efficient computing and system state identification for genetic regulatory networks
JF  - BMC Bioinformatics
N2  - Background: Boolean networks capture switching behavior of many naturally occurring regulatory networks. For semi-quantitative modeling, interpolation between ON and OFF states is necessary. The high degree polynomial interpolation of Boolean genetic regulatory networks (GRNs) in cellular processes such as apoptosis or proliferation allows for the modeling of a wider range of node interactions than continuous activator-inhibitor models, but suffers from scaling problems for networks which contain nodes with more than ~10 inputs. Many GRNs from literature or new gene expression experiments exceed those limitations and a new approach was developed.
Results: (i) As a part of our new GRN simulation framework Jimena we introduce and setup Boolean-tree-based data structures; (ii) corresponding algorithms greatly expedite the calculation of the polynomial interpolation in almost all cases, thereby expanding the range of networks which can be simulated by this model in reasonable time. (iii) Stable states for discrete models are efficiently counted and identified using binary decision diagrams. As application example, we show how system states can now be sampled efficiently in small up to large scale hormone disease networks (Arabidopsis thaliana development and immunity, pathogen Pseudomonas syringae and modulation by cytokinins and plant hormones).
Conclusions: Jimena simulates currently available GRNs about 10-100 times faster than the previous implementation of the polynomial interpolation model and even greater gains are achieved for large scale-free networks. This speed-up also facilitates a much more thorough sampling of continuous state spaces which may lead to the identification of new stable states. Mutants of large networks can be constructed and analyzed very quickly enabling new insights into network robustness and behavior.
KW  - Boolean function
KW  - genetic regulatory network
KW  - interpolation
KW  - stable state
KW  - binary decision diagram
KW  - Boolean tree
Y1  - 2013
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-128671
VL  - 14
ER  - 
TY  - RPRT
A1  - Rauber, Christof A. O.
A1  - Brechtel, Lukas
A1  - Schotten, Hans D.
T1  - JCAS-Enabled Sensing as a Service in 6th-Generation Mobile Communication Networks
T2  - KuVS Fachgespräch - Würzburg Workshop on Modeling, Analysis and Simulation of Next-Generation Communication Networks 2023 (WueWoWAS’23)
N2  - The introduction of new types of frequency spectrum in 6G technology facilitates the convergence of conventional mobile communications and radar functions. Thus, the mobile network itself becomes a versatile sensor system. This enables mobile network operators to offer a sensing service in addition to conventional data and telephony services. The potential benefits are expected to accrue to various stakeholders, including individuals, the environment, and society in general. The paper discusses technological development, possible integration, and use cases, as well as future development areas.
KW  - Sensing-aaS
KW  - JCAS
KW  - 6G
Y1  - 2023
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-322135
ER  - 
TY  - INPR
A1  - Nassourou, Mohamadou
T1  - Java Web Frameworks Which One to Choose?
N2  - This article discusses web frameworks that are available to a software developer in Java language. It introduces MVC paradigm and some frameworks that implement it. The article presents an overview of Struts, Spring MVC, JSF Frameworks, as well as guidelines for selecting one of them as development environment.
KW  - Java Frameworks
KW  - MVC <Software>
KW  - Struts
KW  - Spring
KW  - JSF
Y1  - 2010
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-49407
ER  -