TY - JOUR A1 - Müller, Konstantin A1 - Leppich, Robert A1 - Geiß, Christian A1 - Borst, Vanessa A1 - Pelizari, Patrick Aravena A1 - Kounev, Samuel A1 - Taubenböck, Hannes T1 - Deep neural network regression for normalized digital surface model generation with Sentinel-2 imagery JF - IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing N2 - In recent history, normalized digital surface models (nDSMs) have been constantly gaining importance as a means to solve large-scale geographic problems. High-resolution surface models are precious, as they can provide detailed information for a specific area. However, measurements with a high resolution are time consuming and costly. Only a few approaches exist to create high-resolution nDSMs for extensive areas. This article explores approaches to extract high-resolution nDSMs from low-resolution Sentinel-2 data, allowing us to derive large-scale models. We thereby utilize the advantages of Sentinel 2 being open access, having global coverage, and providing steady updates through a high repetition rate. Several deep learning models are trained to overcome the gap in producing high-resolution surface maps from low-resolution input data. With U-Net as a base architecture, we extend the capabilities of our model by integrating tailored multiscale encoders with differently sized kernels in the convolution as well as conformed self-attention inside the skip connection gates. Using pixelwise regression, our U-Net base models can achieve a mean height error of approximately 2 m. Moreover, through our enhancements to the model architecture, we reduce the model error by more than 7%. KW - Deep learning KW - multiscale encoder KW - sentinel KW - surface model Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-349424 SN - 1939-1404 VL - 16 ER - TY - JOUR A1 - Liman, Leon A1 - May, Bernd A1 - Fette, Georg A1 - Krebs, Jonathan A1 - Puppe, Frank T1 - Using a clinical data warehouse to calculate and present key metrics for the radiology department: implementation and performance evaluation JF - JMIR Medical Informatics N2 - Background: Due to the importance of radiologic examinations, such as X-rays or computed tomography scans, for many clinical diagnoses, the optimal use of the radiology department is 1 of the primary goals of many hospitals. Objective: This study aims to calculate the key metrics of this use by creating a radiology data warehouse solution, where data from radiology information systems (RISs) can be imported and then queried using a query language as well as a graphical user interface (GUI). Methods: Using a simple configuration file, the developed system allowed for the processing of radiology data exported from any kind of RIS into a Microsoft Excel, comma-separated value (CSV), or JavaScript Object Notation (JSON) file. These data were then imported into a clinical data warehouse. Additional values based on the radiology data were calculated during this import process by implementing 1 of several provided interfaces. Afterward, the query language and GUI of the data warehouse were used to configure and calculate reports on these data. For the most common types of requested reports, a web interface was created to view their numbers as graphics. Results: The tool was successfully tested with the data of 4 different German hospitals from 2018 to 2021, with a total of 1,436,111 examinations. The user feedback was good, since all their queries could be answered if the available data were sufficient. The initial processing of the radiology data for using them with the clinical data warehouse took (depending on the amount of data provided by each hospital) between 7 minutes and 1 hour 11 minutes. Calculating 3 reports of different complexities on the data of each hospital was possible in 1-3 seconds for reports with up to 200 individual calculations and in up to 1.5 minutes for reports with up to 8200 individual calculations. Conclusions: A system was developed with the main advantage of being generic concerning the export of different RISs as well as concerning the configuration of queries for various reports. The queries could be configured easily using the GUI of the data warehouse, and their results could be exported into the standard formats Excel and CSV for further processing. KW - data warehouse KW - eHealth KW - hospital data KW - electronic health records KW - radiology KW - statistics and numerical data KW - medical records Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-349411 SN - 2291-9694 VL - 11 ER - TY - JOUR A1 - Seufert, Anika A1 - Poignée, Fabian A1 - Seufert, Michael A1 - Hoßfeld, Tobias T1 - Share and multiply: modeling communication and generated traffic in private WhatsApp groups JF - IEEE Access N2 - Group-based communication is a highly popular communication paradigm, which is especially prominent in mobile instant messaging (MIM) applications, such as WhatsApp. Chat groups in MIM applications facilitate the sharing of various types of messages (e.g., text, voice, image, video) among a large number of participants. As each message has to be transmitted to every other member of the group, which multiplies the traffic, this has a massive impact on the underlying communication networks. However, most chat groups are private and network operators cannot obtain deep insights into MIM communication via network measurements due to end-to-end encryption. Thus, the generation of traffic is not well understood, given that it depends on sizes of communication groups, speed of communication, and exchanged message types. In this work, we provide a huge data set of 5,956 private WhatsApp chat histories, which contains over 76 million messages from more than 117,000 users. We describe and model the properties of chat groups and users, and the communication within these chat groups, which gives unprecedented insights into private MIM communication. In addition, we conduct exemplary measurements for the most popular message types, which empower the provided models to estimate the traffic over time in a chat group. KW - communication models KW - group-based communication KW - mobile instant messaging KW - mobile messaging application KW - private chat groups KW - WhatsApp Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-349430 VL - 11 ER - TY - RPRT A1 - Herrmann, Martin A1 - Rizk, Amr T1 - On Data Plane Multipath Scheduling for Connected Mobility Applications T2 - KuVS Fachgespräch - Würzburg Workshop on Modeling, Analysis and Simulation of Next-Generation Communication Networks 2023 (WueWoWAS’23) N2 - Cooperative, connected and automated mobility (CCAM) systems depend on a reliable communication to provide their service and more crucially to ensure the safety of users. One way to ensure the reliability of a data transmission is to use multiple transmission technologies in combination with redundant flows. In this paper, we describe a system requiring multipath communication in the context of CCAM. To this end, we introduce a data plane-based scheduler that uses replication and integration modules to provide redundant and transparent multipath communication. We provide an analytical model for the full replication module of the system and give an overview of how and where the data-plane scheduler components can be realized. KW - multipath scheduling KW - connected mobility applications Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-353444 N1 - Ursprüngliche Version unter https://doi.org/10.25972/OPUS-32203 ET - aktualisierte Version ER - TY - JOUR A1 - Krenzer, Adrian A1 - Heil, Stefan A1 - Fitting, Daniel A1 - Matti, Safa A1 - Zoller, Wolfram G. A1 - Hann, Alexander A1 - Puppe, Frank T1 - Automated classification of polyps using deep learning architectures and few-shot learning JF - BMC Medical Imaging N2 - Background Colorectal cancer is a leading cause of cancer-related deaths worldwide. The best method to prevent CRC is a colonoscopy. However, not all colon polyps have the risk of becoming cancerous. Therefore, polyps are classified using different classification systems. After the classification, further treatment and procedures are based on the classification of the polyp. Nevertheless, classification is not easy. Therefore, we suggest two novel automated classifications system assisting gastroenterologists in classifying polyps based on the NICE and Paris classification. Methods We build two classification systems. One is classifying polyps based on their shape (Paris). The other classifies polyps based on their texture and surface patterns (NICE). A two-step process for the Paris classification is introduced: First, detecting and cropping the polyp on the image, and secondly, classifying the polyp based on the cropped area with a transformer network. For the NICE classification, we design a few-shot learning algorithm based on the Deep Metric Learning approach. The algorithm creates an embedding space for polyps, which allows classification from a few examples to account for the data scarcity of NICE annotated images in our database. Results For the Paris classification, we achieve an accuracy of 89.35 %, surpassing all papers in the literature and establishing a new state-of-the-art and baseline accuracy for other publications on a public data set. For the NICE classification, we achieve a competitive accuracy of 81.13 % and demonstrate thereby the viability of the few-shot learning paradigm in polyp classification in data-scarce environments. Additionally, we show different ablations of the algorithms. Finally, we further elaborate on the explainability of the system by showing heat maps of the neural network explaining neural activations. Conclusion Overall we introduce two polyp classification systems to assist gastroenterologists. We achieve state-of-the-art performance in the Paris classification and demonstrate the viability of the few-shot learning paradigm in the NICE classification, addressing the prevalent data scarcity issues faced in medical machine learning. KW - machine learning KW - deep learning KW - endoscopy KW - gastroenterology KW - automation KW - image classification KW - transformer KW - deep metric learning KW - few-shot learning Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-357465 VL - 23 ER - TY - JOUR A1 - Bayer, Daniel A1 - Pruckner, Marco T1 - A digital twin of a local energy system based on real smart meter data JF - Energy Informatics N2 - The steadily increasing usage of smart meters generates a valuable amount of high-resolution data about the individual energy consumption and production of local energy systems. Private households install more and more photovoltaic systems, battery storage and big consumers like heat pumps. Thus, our vision is to augment these collected smart meter time series of a complete system (e.g., a city, town or complex institutions like airports) with simulatively added previously named components. We, therefore, propose a novel digital twin of such an energy system based solely on a complete set of smart meter data including additional building data. Based on the additional geospatial data, the twin is intended to represent the addition of the abovementioned components as realistically as possible. Outputs of the twin can be used as a decision support for either system operators where to strengthen the system or for individual households where and how to install photovoltaic systems and batteries. Meanwhile, the first local energy system operators had such smart meter data of almost all residential consumers for several years. We acquire those of an exemplary operator and discuss a case study presenting some features of our digital twin and highlighting the value of the combination of smart meter and geospatial data. KW - digital twin KW - simulation KW - local energy system KW - decision support system KW - smart meter data utilization KW - future energy grid exploration Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-357456 VL - 6 ER - TY - THES A1 - Krenzer, Adrian T1 - Machine learning to support physicians in endoscopic examinations with a focus on automatic polyp detection in images and videos T1 - Maschinelles Lernen zur Unterstützung von Ärzten bei endoskopischen Untersuchungen mit Schwerpunkt auf der automatisierten Polypenerkennung in Bildern und Videos N2 - Deep learning enables enormous progress in many computer vision-related tasks. Artificial Intel- ligence (AI) steadily yields new state-of-the-art results in the field of detection and classification. Thereby AI performance equals or exceeds human performance. Those achievements impacted many domains, including medical applications. One particular field of medical applications is gastroenterology. In gastroenterology, machine learning algorithms are used to assist examiners during interventions. One of the most critical concerns for gastroenterologists is the development of Colorectal Cancer (CRC), which is one of the leading causes of cancer-related deaths worldwide. Detecting polyps in screening colonoscopies is the essential procedure to prevent CRC. Thereby, the gastroenterologist uses an endoscope to screen the whole colon to find polyps during a colonoscopy. Polyps are mucosal growths that can vary in severity. This thesis supports gastroenterologists in their examinations with automated detection and clas- sification systems for polyps. The main contribution is a real-time polyp detection system. This system is ready to be installed in any gastroenterology practice worldwide using open-source soft- ware. The system achieves state-of-the-art detection results and is currently evaluated in a clinical trial in four different centers in Germany. The thesis presents two additional key contributions: One is a polyp detection system with ex- tended vision tested in an animal trial. Polyps often hide behind folds or in uninvestigated areas. Therefore, the polyp detection system with extended vision uses an endoscope assisted by two additional cameras to see behind those folds. If a polyp is detected, the endoscopist receives a vi- sual signal. While the detection system handles the additional two camera inputs, the endoscopist focuses on the main camera as usual. The second one are two polyp classification models, one for the classification based on shape (Paris) and the other on surface and texture (NBI International Colorectal Endoscopic (NICE) classification). Both classifications help the endoscopist with the treatment of and the decisions about the detected polyp. The key algorithms of the thesis achieve state-of-the-art performance. Outstandingly, the polyp detection system tested on a highly demanding video data set shows an F1 score of 90.25 % while working in real-time. The results exceed all real-time systems in the literature. Furthermore, the first preliminary results of the clinical trial of the polyp detection system suggest a high Adenoma Detection Rate (ADR). In the preliminary study, all polyps were detected by the polyp detection system, and the system achieved a high usability score of 96.3 (max 100). The Paris classification model achieved an F1 score of 89.35 % which is state-of-the-art. The NICE classification model achieved an F1 score of 81.13 %. Furthermore, a large data set for polyp detection and classification was created during this thesis. Therefore a fast and robust annotation system called Fast Colonoscopy Annotation Tool (FastCAT) was developed. The system simplifies the annotation process for gastroenterologists. Thereby the i gastroenterologists only annotate key parts of the endoscopic video. Afterward, those video parts are pre-labeled by a polyp detection AI to speed up the process. After the AI has pre-labeled the frames, non-experts correct and finish the annotation. This annotation process is fast and ensures high quality. FastCAT reduces the overall workload of the gastroenterologist on average by a factor of 20 compared to an open-source state-of-art annotation tool. N2 - Deep Learning ermöglicht enorme Fortschritte bei vielen Aufgaben im Bereich der Computer Vision. Künstliche Intelligenz (KI) liefert ständig neue Spitzenergebnisse im Bereich der Erkennung und Klassifizierung. Dabei erreicht oder übertrifft die Leistung von KI teilweise die menschliche Leistung. Diese Errungenschaften wirken sich auf viele Bereiche aus, darunter auch auf medizinische Anwendungen. Ein besonderer Bereich der medizinischen Anwendungen ist die Gastroenterologie. In der Gastroenterologie werden Algorithmen des maschinellen Lernens eingesetzt, um den Untersucher bei medizinischen Eingriffen zu unterstützen. Eines der größten Probleme für Gastroenterologen ist die Entwicklung von Darmkrebs, die weltweit eine der häufigsten krebsbedingten Todesursachen ist. Die Erkennung von Polypen bei Darmspiegelungen ist das wichtigste Verfahren zur Vorbeugung von Darmkrebs. Dabei untersucht der Gastroenterologe den Dickdarm im Rahmen einer Koloskopie, um z.B. Polypen zu finden. Polypen sind Schleimhautwucherungen, die unterschiedlich stark ausgeprägt sein können. Diese Arbeit unterstützt Gastroenterologen bei ihren Untersuchungen mit automatischen Erkennungssystemen und Klassifizierungssystemen für Polypen. Der Hauptbeitrag ist ein Echtzeitpolypenerkennungssystem. Dieses System kann in jeder gastroenterologischen Praxis weltweit mit Open- Source-Software installiert werden. Das System erzielt Erkennungsergebnisse auf dem neusten Stand der Technik und wird derzeit in einer klinischen Studie in vier verschiedenen Praxen in Deutschland evaluiert. In dieser Arbeit werden zwei weitere wichtige Beiträge vorgestellt: Zum einen ein Polypenerkennungssystem mit erweiterter Sicht, das in einem Tierversuch getestet wurde. Polypen verstecken sich oft hinter Falten oder in nicht untersuchten Bereichen. Daher verwendet das Polypenerkennungssystem mit erweiterter Sicht ein Endoskop, das von zwei zusätzlichen Kameras unterstützt wird, um hinter diese Falten zu sehen. Wenn ein Polyp entdeckt wird, erhält der Endoskopiker ein visuelles Signal. Während das Erkennungssystem die beiden zusätzlichen Kameraeingaben verarbeitet, konzentriert sich der Endoskopiker wie gewohnt auf die Hauptkamera. Das zweite sind zwei Polypenklassifizierungsmodelle, eines für die Klassifizierung anhand der Form (Paris) und das andere anhand der Oberfläche und Textur (NICE-Klassifizierung). Beide Klassifizierungen helfen dem Endoskopiker bei der Behandlung und Entscheidung über den erkannten Polypen. Die Schlüsselalgorithmen der Dissertation erreichen eine Leistung, die dem neuesten Stand der Technik entspricht. Herausragend ist, dass das auf einem anspruchsvollen Videodatensatz getestete Polypenerkennungssystem einen F1-Wert von 90,25 % aufweist, während es in Echtzeit arbeitet. Die Ergebnisse übertreffen alle Echtzeitsysteme für Polypenerkennung in der Literatur. Darüber hinaus deuten die ersten vorläufigen Ergebnisse einer klinischen Studie des Polypenerkennungssystems auf eine hohe Adenomdetektionsrate ADR hin. In dieser Studie wurden alle Polypen durch das Polypenerkennungssystem erkannt, und das System erreichte einen hohe Nutzerfreundlichkeit von 96,3 (maximal 100). Bei der automatischen Klassifikation von Polypen basierend auf der Paris Klassifikations erreichte das in dieser Arbeit entwickelte System einen F1-Wert von 89,35 %, was dem neuesten Stand der Technik entspricht. Das NICE-Klassifikationsmodell erreichte eine F1- Wert von 81,13 %. Darüber hinaus wurde im Rahmen dieser Arbeit ein großer Datensatz zur Polypenerkennung und -klassifizierung erstellt. Dafür wurde ein schnelles und robustes Annotationssystem namens FastCAT entwickelt. Das System vereinfacht den Annotationsprozess für Gastroenterologen. Die Gastroenterologen annotieren dabei nur die wichtigsten Teile des endoskopischen Videos. Anschließend werden diese Videoteile von einer Polypenerkennungs-KI vorverarbeitet, um den Prozess zu beschleunigen. Nachdem die KI die Bilder vorbeschriftet hat, korrigieren und vervollständigen Nicht-Experten die Annotationen. Dieser Annotationsprozess ist schnell und gewährleistet eine hohe Qualität. FastCAT reduziert die Gesamtarbeitsbelastung des Gastroenterologen im Durchschnitt um den Faktor 20 im Vergleich zu einem Open-Source-Annotationstool auf dem neuesten Stand der Technik. KW - Deep Learning KW - Maschinelles Lernen KW - Maschinelles Sehen KW - Machine Learning KW - Object Detection KW - Medical Image Analysis KW - Computer Vision KW - Gastroenterologische Endoskopie KW - Polypektomie Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-319119 ER -