TY - JOUR A1 - Tsoneva, Desislava A1 - Minev, Boris A1 - Frentzen, Alexa A1 - Zhang, Qian A1 - Wege, Anja K. A1 - Szalay, Aladar A. T1 - Humanized Mice with Subcutaneous Human Solid Tumors for Immune Response Analysis of Vaccinia Virus-Mediated Oncolysis JF - Molecular Therapy Oncolytics N2 - Oncolytic vaccinia virus (VACV) therapy is an alternative cancer treatment modality that mediates targeted tumor destruction through a tumor-selective replication and an induction of anti-tumor immunity. We developed a humanized tumor mouse model with subcutaneous human tumors to analyze the interactions of VACV with the developing tumors and human immune system. A successful systemic reconstitution with human immune cells including functional T cells as well as development of tumors infiltrated with human T and natural killer (NK) cells was observed. We also demonstrated successful in vivo colonization of such tumors with systemically administered VACVs. Further, a new recombinant GLV-1h376 VACV encoding for a secreted human CTLA4-blocking single-chain antibody (CTLA4 scAb) was tested. Surprisingly, although proving CTLA4 scAb’s in vitro binding ability and functionality in cell culture, beside the significant increase of CD56\(^{bright}\) NK cell subset, GLV-1h376 was not able to increase cytotoxic T or overall NK cell levels at the tumor site. Importantly, the virus-encoded β-glucuronidase as a measure of viral titer and CTLA4 scAb amount was demonstrated. Therefore, studies in our “patient-like” humanized tumor mouse model allow the exploration of newly designed therapy strategies considering the complex relationships between the developing tumor, the oncolytic virus, and the human immune system. KW - humanized tumor KW - mouse model KW - subcutaneous human tumors KW - Oncolytic vaccinia virus Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170786 VL - 5 ER - TY - JOUR A1 - Benz, Roland A1 - Jones, Michael D. A1 - Younas, Farhan A1 - Maier, Elke A1 - Modi, Niraj A1 - Mentele, Reinhard A1 - Lottspeich, Friedrich A1 - Kleinekathöfer, Ulrich A1 - Smit, John T1 - OmpW of Caulobacter crescentus functions as an outer membrane channel for cations JF - PLoS ONE N2 - Caulobacter crescentus is an oligotrophic bacterium that lives in dilute organic environments such as soil and freshwater. This bacterium represents an interesting model for cellular differentiation and regulation because daughter cells after division have different forms: one is motile while the other is non-motile and can adhere to surfaces. Interestingly, the known genome of C. crescentus does not contain genes predicted to code for outer membrane porins of the OmpF/C general diffusion type present in enteric bacteria or those coding for specific porins selective for classes of substrates. Instead, genes coding for 67 TonB-dependent outer membrane receptors have been identified, suggesting that active transport of specific nutrients may be the norm. Here, we report that high channel-forming activity was observed with crude outer membrane extracts of C. crescentus in lipid bilayer experiments, indicating that the outer membrane of C. crescentus contained an ion-permeable channel with a single-channel conductance of about 120 pS in 1M KCl. The channel-forming protein with an apparent molecular mass of about 20 kDa was purified to homogeneity. Partial protein sequencing of the protein indicated it was a member of the OmpW family of outer membrane proteins from Gram-negative bacteria. This channel was not observed in reconstitution experiments with crude outer membrane extracts of an OmpW deficient C. crescentus mutant. Biophysical analysis of the C. crescentus OmpW suggested that it has features that are special for general diffusion porins of Gram-negative outer membranes because it was not a wide aqueous channel. Furthermore, OmpW of C. crescentus seems to be different to known OmpW porins and has a preference for ions, in particular cations. A putative model for OmpW of C. crescentus was built on the basis of the known 3D-structures of OmpW of Escherichia coli and OprG of Pseudomonas aeruginosa using homology modeling. A comparison of the two known structures with the model of OmpW of C. crescentus suggested that it has a more hydrophilic interior and possibly a larger diameter. KW - matrix protein porin KW - amino acid sequence KW - escherichia coli KW - selective channel KW - molecular basis KW - lipid bilayer membranes KW - S-layer protein KW - pseudomonas aeruginosa KW - ionic selectivity KW - cell wall Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-145114 VL - 10 IS - 11 ER - TY - JOUR A1 - Atak, Sinem A1 - Langlhofer, Georg A1 - Schaefer, Natascha A1 - Kessler, Denise A1 - Meiselbach, Heike A1 - Delto, Carolyn A1 - Schindelin, Hermann A1 - Villmann, Carmen T1 - Disturbances of ligand potency and enhanced degradation of the human glycine receptor at affected positions G160 and T162 originally identified in patients suffering from hyperekplexia JF - Frontiers in Molecular Neuroscience N2 - Ligand-binding of Cys-loop receptors is determined by N-terminal extracellular loop structures from the plus as well as from the minus side of two adjacent subunits in the pentameric receptor complex. An aromatic residue in loop B of the glycine receptor (GIyR) undergoes direct interaction with the incoming ligand via a cation-π interaction. Recently, we showed that mutated residues in loop B identified from human patients suffering from hyperekplexia disturb ligand-binding. Here, we exchanged the affected human residues by amino acids found in related members of the Cys-loop receptor family to determine the effects of side chain volume for ion channel properties. GIyR variants were characterized in vitro following transfection into cell lines in order to analyze protein expression, trafficking, degradation and ion channel function. GIyR α1 G160 mutations significantly decrease glycine potency arguing for a positional effect on neighboring aromatic residues and consequently glycine-binding within the ligand-binding pocket. Disturbed glycinergic inhibition due to T162 α1 mutations is an additive effect of affected biogenesis and structural changes within the ligand-binding site. Protein trafficking from the ER toward the ER-Golgi intermediate compartment, the secretory Golgi pathways and finally the cell surface is largely diminished, but still sufficient to deliver ion channels that are functional at least at high glycine concentrations. The majority of T162 mutant protein accumulates in the ER and is delivered to ER-associated proteasomal degradation. Hence, G160 is an important determinant during glycine binding. In contrast, 1162 affects primarily receptor biogenesis whereas exchanges in functionality are secondary effects thereof. KW - mutations KW - trafficking KW - domain KW - hyperekplexia KW - loop B KW - side chain properties KW - ligand potencies KW - Cys-loop receptor KW - glycine receptor KW - site KW - activation KW - binding KW - channel KW - mechanisms KW - dominant KW - startle Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-144818 VL - 8 IS - 79 ER - TY - INPR A1 - Scheitl, Carolin P. M. A1 - Mieczkowski, Mateusz A1 - Schindelin, Hermann A1 - Höbartner, Claudia T1 - Structure and mechanism of the methyltransferase ribozyme MTR1 T2 - Nature Chemical Biology N2 - RNA-catalysed RNA methylation was recently shown to be part of the catalytic repertoire of ribozymes. The methyltransferase ribozyme MTR1 catalyses the site-specific synthesis of 1-methyladenosine (m\(^1\)A) in RNA, using O\(^6\)-methylguanine (m\(^6\)G) as methyl group donor. Here we report the crystal structure of MTR1 at a resolution of 2.8 Å, which reveals a guanine binding site reminiscent of natural guanine riboswitches. The structure represents the postcatalytic state of a split ribozyme in complex with the m1A-containing RNA product and the demethylated cofactor guanine. The structural data suggest the mechanistic involvement of a protonated cytidine in the methyl transfer reaction. A synergistic effect of two 2'-O-methylated ribose residues in the active site results in accelerated methyl group transfer. Supported by these results, it seems plausible that modified nucleotides may have enhanced early RNA catalysis and that metabolite-binding riboswitches may resemble inactivated ribozymes that have lost their catalytic activity during evolution. KW - Methyltransferase Ribozyme MTR1 KW - Crystal structure of MTR1 KW - RNA-catalyzed RNA methylation KW - X-ray crystallography KW - RNA Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-272170 ET - submitted version ER - TY - JOUR A1 - Martín, Ovidio Jiménez A1 - Schlosser, Andreas A1 - Furtwängler, Rhoikos A1 - Wegert, Jenny A1 - Gessler, Manfred T1 - MYCN and MAX alterations in Wilms tumor and identification of novel N-MYC interaction partners as biomarker candidates JF - Cancer Cell International N2 - Background Wilms tumor (WT) is the most common renal tumor in childhood. Among others, MYCN copy number gain and MYCN P44L and MAX R60Q mutations have been identified in WT. MYCN encodes a transcription factor that requires dimerization with MAX to activate transcription of numerous target genes. MYCN gain has been associated with adverse prognosis in different childhood tumors including WT. The MYCN P44L and MAX R60Q mutations, located in either the transactivating or basic helix-loop-helix domain, respectively, are predicted to be damaging by different pathogenicity prediction tools, but the functional consequences remain to be characterized. Methods We screened a large cohort of unselected WTs for MYCN and MAX alterations. Wild-type and mutant protein function were characterized biochemically, and we analyzed the N-MYC protein interactome by mass spectrometric analysis of N-MYC containing protein complexes. Results Mutation screening revealed mutation frequencies of 3% for MYCN P44L and 0.9% for MAX R60Q that are associated with a higher risk of relapse. Biochemical characterization identified a reduced transcriptional activation potential for MAX R60Q, while the MYCN P44L mutation did not change activation potential or protein stability. The protein interactome of N-MYC-P44L was likewise not altered as shown by mass spectrometric analyses of purified N-MYC complexes. Nevertheless, we could identify a number of novel N-MYC partner proteins, e.g. PEG10, YEATS2, FOXK1, CBLL1 and MCRS1, whose expression is correlated with MYCN in WT samples and several of these are known for their own oncogenic potential. Conclusions The strongly elevated risk of relapse associated with mutant MYCN and MAX or elevated MYCN expression corroborates their role in WT oncogenesis. Together with the newly identified co-expressed interactors they expand the range of potential biomarkers for WT stratification and targeting, especially for high-risk WT. KW - Wilms tumor KW - MYCN KW - MAX KW - interactome KW - mutation screening Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-265542 VL - 21 ER - TY - THES A1 - Karch, Katharina T1 - Mapping and Neutralization of Antibodies against Neurofascin, Contactin 1, Contactin associated protein 1 and Cortactin T1 - Kartierung und Neutralisation von Antikörpern gegen Neurofascin, Contactin 1, Contactin assoziiertes Protein 1 und Cortactin N2 - Immune-mediated polyneuropathies like chronic inflammatory demyelinating polyradiculoneuropathy or Guillain-Barré syndrome are rare diseases of the peripheral nervous system. A subgroup of patients harbors autoantibodies against nodal or paranodal antigens, associated with a distinct phenotype and treatment response. In a part of patients with pathologic paranodal or nodal immunoreactivity the autoantigens remain difficult or impossible to determine owing to limitations of the used detection approach - usually ELISAs (enzyme-linked-immunosorbent-assays) - and incomplete knowledge of the possible autoantigens. Due to their high-throughput, low sample consumption and high sensitivity as well as the possibility to display many putative nodal and paranodal autoantigens simultaneously, peptide microarray-based approaches are prime candidates for the discovery of novel autoantigens, point-of-care diagnostics and, in addition, monitoring of pathologic autoimmune response. Current applications of peptide microarrays are however limited by high false-positive rates and the associated need for detailed follow-up studies and validation. Here, robust peptide microarray-based detection of antibodies and the efficient validation of binding signals by on-chip neutralization is demonstrated. First, autoantigens were displayed as overlapping peptide libraries in microarray format. Copies of the biochips were used for the fine mapping of antibody epitopes. Next, binding signals were validated by antibody neutralization in solution. Since neutralizing peptides are obtained in the process of microarray fabrications, neither throughput nor costs are significantly altered. Similar in-situ validation approaches could contribute to future autoantibody characterization and detection methods as well as to therapeutic research. Areas of application could be expanded to any autoimmune-mediated neurological disease as a long-term vision. N2 - Immunvermittelte Polyneuropathien wie die chronisch-inflammatorische demyelinisierende Polyradikuloneuropathie oder das Guillain-Barré-Syndrom sind seltene Erkrankungen des peripheren Nervensystems. Bei einem Teil dieser Patienten lassen sich Autoantikörper gegen nodale oder paranodale Antigene nachweisen, was mit einem bestimmten Phänotyp und Therapienansprechen assoziiert ist. Aufgrund der Einschränkungen verwendeter Detektionsansätze – üblicherweise ELISAs (Enzyme-linked Immunosorbent Assays) – sowie der unvollständigen Kenntnis potenzieller Autoantigene bleibt es bisher zum Teil schwierig bis unmöglich bei nachgewiesener pathologischer paranodaler bzw. nodaler Immunreaktivität die entsprechenden Autoantigene zu identifizieren. Die hohe Durchsatzleistung, der geringe Verbrauch an Probenmaterial, die hohe Sensitivität sowie die Möglichkeit zahlreiche mutmaßliche nodale und paranodale Autoantigene zeitgleich darzustellen machen Peptid-Microarray-basierte Ansätze zu wesentlichen Kandidaten für die Entdeckung neuer Autoantigene, für Point-of-Care-Diagnostik und darüber hinaus für das Monitoring pathologischer Autoimmunantworten. Durch die hohe Rate falsch positiver Ergebnisse sowie die damit verbundene Notwendigkeit detaillierter Folgestudien und Validierungen sind die gegenwärtigen Anwendungen von Peptid-Microarrays jedoch limitiert. In dieser Arbeit wird eine robuste, Peptid-Microarray-basierte Detektion von Antikörpern sowie eine effiziente Validierung der Bindungssignale mittels On-chip Neutralisation demonstriert. Zuerst wurden die Autoantigene als überlappende Peptidbüchereien im Microarray-Format dargestellt. Kopien der Biochips wurden für die Feinkartierung der Antikörper-Epitope verwendet. Mittels Antikörperneutralisation in Lösung wurden die Bindungssignale anschließend validiert. Da die neutralisierenden Peptide im Microarray- Herstellungsprozess gewonnen werden, ergeben sich weder beim Durchsatz noch bei den Kosten signifikante Änderungen. Vergleichbare In-situ-Validierungsansätze könnten zu künftigen Autoantikörper Charakterisierungen, Detektionsmethoden sowie zu therapeutischen Forschungsansätzen beitragen. Als langfristige Vision könnten die Anwendungsgebiete auf jede beliebige autoimmun-vermittelte neurologische Krankheit ausgeweitet werden. KW - Microarray KW - Antikörper KW - Autoantigen KW - Epitop KW - Neutralisation KW - antibody KW - autoantigen KW - epitope KW - neutralization KW - fine-mapping KW - Neurofascin KW - Contactin 1 KW - Caspr1 KW - Cortactin Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-280223 ER - TY - THES A1 - Karus, Christine T1 - Untersuchung der Architektur von Proteinstrukturen des Ranvier-Schnürrings mittels der super-hochauflösenden Mikroskopiemethode dSTORM T1 - Investigation of the architecture of protein structures of the Node of Ranvier using the super-high resolution microscopy method dSTORM N2 - Ranvier-Schnürringe spielen eine entscheidende Rolle bei der schnellen Weiterleitung von elektrischen Impulsen in Nervenzellen. Bei bestimmten neurologischen Erkrankungen, den Neuropathien, kann es zu Störungen in der ultrastrukturellen Organisation verschiedener Schnürring-Proteine kommen (Doppler et al., 2018, Doppler et al., 2016). Eine detailliertere Kenntnis der genauen Anordnung dieser Schnürring-Proteine und eventueller Abweichungen von dieser Anordnung im Krankheitsfall, könnte der Schlüssel zu einer vereinfachten Diagnostik von bestimmten Neuropathie- Formen sein. Ziel meiner Arbeit war es daher, die Untersuchung der ultrastrukturellen Architektur der (para-)nodalen Adhäsionsproteine Neurofascin-155 und Caspr1 unter Verwendung der super-hochauflösenden Mikroskopiemethode dSTORM (direct Stochastic Optical Reconstruction Microscopy) an murinen Zupfnervenpräparaten zu etablieren. Nach erster Optimierung der Probenpräparation für die 2-Farben-dSTORM sowie der korrelationsbasierten Bildanalyse, konnte ich mittels modellbasierter Simulation die zugrundeliegende Molekülorganisation identifizieren und mit Hilfe der Ergebnisse aus früheren Untersuchungen validieren. In einem translationalen Ansatz habe ich anschließend humane Zupfnervenpräparate von 14 Probanden mit unterschiedlichen Formen einer Neuropathie mikroskopiert und ausgewertet, um die Anwendbarkeit dieses Ansatzes in der Diagnostik zu testen. Obgleich keine signifikanten Unterschiede zwischen physiologischem und pathologischem neurologischem Gewebe hinsichtlich Neurofascin-155 und Caspr1 festgestellt werden konnten, scheint der Ansatz grundsätzlich dennoch vielversprechend zu sein, bedarf jedoch noch weiteren Anstrengungen hinsichtlich Probenpräparation, Auswertungs- und Versuchsprotokollen und einer größeren Anzahl an humanen Biopsien mit homogenerem Krankheitsbild. N2 - Nodes of Ranvier play a critical role in the rapid transmission of electrical impulses in neurons. In certain neurological diseases, the neuropathies, there may be disturbances in the ultrastructural organization of various nodal and paranodal proteins (Doppler et al., 2018, Doppler et al., 2016). A more detailed knowledge of the exact arrangement of these nodal and paranodal proteins and possible deviations from this arrangement in disease, could be the key to a simplified diagnosis of certain neuropathy forms. Therefore, the aim of my work was to establish the investigation of the ultrastructural architecture of the (para-)nodal adhesion proteins Neurofascin-155 and Caspr1 using the super-high resolution microscopy method dSTORM (direct Stochastic Optical Reconstruction Microscopy) on murine teased fibers. After initial optimization of sample preparation for 2-color dSTORM as well as correlation-based image analysis, I was able to identify the underlying molecular organization using model-based simulation and validate it using results from previous studies. In a translational approach, I then microscoped and evaluated human teased fibers from 14 subjects with different forms of neuropathy to test the applicability of this approach in diagnostics. Although no significant differences were found between physiological and pathological neurological tissue with respect to Neurofascin-155 and Caspr1, the approach still seems promising in principle, but requires further efforts with respect to sample preparation, evaluation and experimental protocols, and a larger number of human biopsies with more homogeneous disease patterns. KW - dSTORM KW - Ranvier-Schnürring Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-274568 N1 - die Dissertation ist ein Kooperationsprojekt dieser beiden Fakultäten ER - TY - INPR A1 - Neitz, Hermann A1 - Bessi, Irene A1 - Kuper, Jochen A1 - Kisker, Caroline A1 - Höbartner, Claudia T1 - Programmable DNA interstrand crosslinking by alkene-alkyne [2+2] photocycloaddition T2 - Journal of the American Chemical Society N2 - Covalent crosslinking of DNA strands provides a useful tool for medical, biochemical and DNA nanotechnology applications. Here we present a light-induced interstrand DNA crosslinking reaction using the modified nucleoside 5-phenylethynyl-2’-deoxyuridine (\(^{Phe}\)dU). The crosslinking ability of \(^{Phe}\)dU was programmed by base pairing and by metal ion interaction at the Watson-Crick base pairing site. Rotation to intrahelical positions was favored by hydrophobic stacking and enabled an unexpected photochemical alkene-alkyne [2+2] cycloaddition within the DNA duplex, resulting in efficient formation of a \(^{Phe}\)dU-dimer after short irradiation times of a few seconds. A \(^{Phe}\)dU dimer-containing DNA was shown to efficiently bind a helicase complex, but the covalent crosslink completely prevented DNA unwinding, suggesting possible applications in biochemistry or structural biology. KW - light-induced interstrand DNA crosslinking KW - alkene-alkyne [2+2] photocycloaddition KW - DNA-based nanostructures KW - DNA-processing enzymes Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-311822 N1 - This document is the unedited Author's version of a Submitted Work that was subsequently accepted for publication in Journal of the American Chemical Society, copyright © 2023 The Authors. Published by American Chemical Society. after peer review. To access the final edited and published work see https://doi.org/10.1021/jacs.3c01611. ET - submitted version ER - TY - JOUR A1 - Friedmann Angeli, José Pedro A1 - Meierjohann, Svenja T1 - NRF2‐dependent stress defense in tumor antioxidant control and immune evasion JF - Pigment Cell & Melanoma Research N2 - The transcription factor NRF2 is known as the master regulator of the oxidative stress response. Tumor entities presenting oncogenic activation of NRF2, such as lung adenocarcinoma, are associated with drug resistance, and accumulating evidence demonstrates its involvement in immune evasion. In other cancer types, the KEAP1/NRF2 pathway is not commonly mutated, but NRF2 is activated by other means such as radiation, oncogenic activity, cytokines, or other pro‐oxidant triggers characteristic of the tumor niche. The obvious effect of stress‐activated NRF2 is the protection from oxidative or electrophilic damage and the adaptation of the tumor metabolism to changing conditions. However, data from melanoma also reveal a role of NRF2 in modulating differentiation and suppressing anti‐tumor immunity. This review summarizes the function of NRF2 in this tumor entity and discusses the implications for current tumor therapies. KW - immune evasion KW - KEAP1 KW - Nrf2 KW - oxidative stress Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-224536 VL - 34 IS - 2 SP - 268 EP - 279 ER - TY - JOUR A1 - Jessen, Christina A1 - Kreß, Julia K. C. A1 - Baluapuri, Apoorva A1 - Hufnagel, Anita A1 - Schmitz, Werner A1 - Kneitz, Susanne A1 - Roth, Sabine A1 - Marquardt, André A1 - Appenzeller, Silke A1 - Ade, Casten P. A1 - Glutsch, Valerie A1 - Wobser, Marion A1 - Friedmann-Angeli, José Pedro A1 - Mosteo, Laura A1 - Goding, Colin R. A1 - Schilling, Bastian A1 - Geissinger, Eva A1 - Wolf, Elmar A1 - Meierjohann, Svenja T1 - The transcription factor NRF2 enhances melanoma malignancy by blocking differentiation and inducing COX2 expression JF - Oncogene N2 - The transcription factor NRF2 is the major mediator of oxidative stress responses and is closely connected to therapy resistance in tumors harboring activating mutations in the NRF2 pathway. In melanoma, such mutations are rare, and it is unclear to what extent melanomas rely on NRF2. Here we show that NRF2 suppresses the activity of the melanocyte lineage marker MITF in melanoma, thereby reducing the expression of pigmentation markers. Intriguingly, we furthermore identified NRF2 as key regulator of immune-modulating genes, linking oxidative stress with the induction of cyclooxygenase 2 (COX2) in an ATF4-dependent manner. COX2 is critical for the secretion of prostaglandin E2 and was strongly induced by H\(_2\)O\(_2\) or TNFα only in presence of NRF2. Induction of MITF and depletion of COX2 and PGE2 were also observed in NRF2-deleted melanoma cells in vivo. Furthermore, genes corresponding to the innate immune response such as RSAD2 and IFIH1 were strongly elevated in absence of NRF2 and coincided with immune evasion parameters in human melanoma datasets. Even in vitro, NRF2 activation or prostaglandin E2 supplementation blunted the induction of the innate immune response in melanoma cells. Transcriptome analyses from lung adenocarcinomas indicate that the observed link between NRF2 and the innate immune response is not restricted to melanoma. KW - NRF2 KW - melanoma malignancy KW - COX2 expression Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-235064 SN - 0950-9232 VL - 39 ER - TY - THES A1 - Brown, Helena Charlotte T1 - Investigating the role of the platelet receptor C-type lectin-like receptor 2 in models of thrombosis T1 - Untersuchungen zur Rolle des Thrombozytenrezeptors CLEC-2 (C- type lectin-like receptor 2) in Thrombosemodellen N2 - Platelets have a key physiological role in haemostasis however, inappropriate thrombus formation can lead to cardiovascular diseases such as myocardial infarction or stroke. Although, such diseases are common worldwide there are comparatively few anti-platelet drugs, and these are associated with an increased risk of bleeding. Platelets also have roles in thrombo-inflammation, immuno-thrombosis and cancer, in part via C-type lectin-like receptor 2 (CLEC-2) and its ligand podoplanin. Although CLEC-2 contributes to these diseases in mice, as well as to thrombus stability, it is unclear whether CLEC-2 has similar roles in humans, particularly as human CLEC-2 (hCLEC-2) cannot be investigated experimentally in vivo. To investigate hCLEC-2 in vivo, we generated a humanised CLEC-2 mouse (hCLEC-2KI) model, as well as a novel monoclonal antibody, HEL1, that binds to a different site than an existing antibody, AYP1. Using these antibodies, we have provided proof of principle for the use of hCLEC-2KI mice to test potential therapeutics targeting hCLEC-2, and shown for the first time that hCLEC-2 can be immunodepleted, with little effect on haemostasis. However, our results have also suggested that there are species differences in the role of CLEC-2 in arterial thrombosis. We further confirmed this using human blood where blocking CLEC-2 ligand binding had no effect on thrombosis, whereas we confirmed a minor role for mouse CLEC-2 in thrombus stability. We also investigated the effect of blocking CLEC-2 signalling using the Bruton’s tyrosine kinase inhibitor PRN473 on CLEC-2 mediated immuno-thrombosis in a Salmonella typhimurium infection model. However, no effect on thrombosis was observed suggesting that CLEC-2 signalling is not involved. Overall, our results suggest that there may be differences in the role of human and mouse CLEC-2, at least in arterial thrombosis, which could limit the potential of CLEC-2 as an anti-thrombotic target. However, it appears that the interaction between CLEC-2 and podoplanin is conserved and therefore CLEC-2 could still be a therapeutic target in immuno-thrombosis, thrombo-inflammation and cancer. Furthermore, any potential human specific therapeutics could be investigated in vivo using hCLEC-2KI mice. N2 - Thrombozyten sind ein wichtiger Bestandteil der Hämostase, können allerdings durch die Bildung eines Blutgerinnsels auch kardiovaskuläre Krankheitsbilder wie Myokardinfarkte oder Schlaganfälle hervorrufen. Obwohl diese Erkrankungen weltweit zu den führenden Todesursachen zählen, gibt es vergleichsweise wenig Thrombozyteninhibitoren und die bislang verfügbaren Wirkstoffe gehen mit einem erhöhten Blutungsrisiko einher. Darüber hinaus spielen Thrombozyten auch bei thrombo-inflammatorischen oder malignen Erkrankungen eine Rolle und sind maßgeblich an Entzündungs-vermittelten Thrombosen (Immunothrombosen) beteiligt. Daten aus Mausmodellen legen nahe, dass die Interaktion zwischen dem Thrombozytenrezeptor CLEC-2 (C-type lectin-like receptor 2) und seinem Liganden Podoplanin von Bedeutung für diese Krankheitsbilder, und die Thrombusstabilität ist. Allerdings ist bislang unklar, ob CLEC-2 im Menschen eine ähnliche Rolle spielt, da die Rolle des menschlichen CLEC-2 (hCLEC-2) in diesen Prozessen bislang nicht experimentell in vivo erforscht werden kann. Um hCLEC-2 in vivo zu erforschen, haben wir Mäuse generiert, die humanes CLEC-2 exprimieren (hCLEC-2KI), sowie einen neuen, monoklonalen Antikörper (HEL1) entwickelt, der an eine andere Bindungsstelle als der zuvor generierter Antikörper (AYP1) bindet. Mit Hilfe dieser Antikörper haben wir erstmalig gezeigt, dass hCLEC-2KI Mäuse geeignet sind, um potenzielle Therapeutika zu testen, die auf hCLEC-2 abzielen. Des Weiteren konnten wir erstmalig zeigen, dass auch hCLEC-2 immunodepletiert werden kann und dass der Verlust des Rezeptors in zirkulierenden Thrombozyten die Hämostase nur minimal beeinträchtigt. Allerdings deuten unsere Ergebnisse auch darauf hin, dass es hinsichtlich der Bedeutung CLEC-2 für die arterielle Thrombose artspezifische Unterschiede gibt: Während Maus CLEC-2 zur Stabilität der Thromben beiträgt, hatte die Blockade der Ligandenbindungsstelle von hCLEC-2 keinen Einfluss auf Thrombose. Des Weiteren wurde mit Hilfe des Bruton’s tyrosine kinase Inhibitors PRN473 der Effekt einer Blockierung des CLEC-2 Signalwegs auf die durch CLEC-2 hervorgerufene Immuno-Thrombose in einem Salmonella typhimurium Infektionsmodel erforscht. Da jedoch keine Effekte nachgewiesen werde konnten, schlussfolgern wir, dass der CLEC-2 Signalweg nicht in diesen Prozess involviert ist. Insgesamt deuten unsere Ergebnisse darauf hin, dass es Unterschiede in der Rolle von CLEC-2 zwischen Mensch und Maus gibt, zumindest im Kontext der arteriellen Thrombose, was das Potenzial von CLEC-2 als antithrombotisches Ziel einschränken könnte. Da allem Anschein nach die Interaktion zwischen CLEC-2 und Podoplanin konserviert ist, könnte CLEC-2 dennoch als Therapeutikum für Thrombo-Inflammation, Immunothrombose und Krebsbildungen genutzt werden. Des Weiteren könnten für den Menschen entwickelte Therapieansätze mit Hilfe von hCLEC-2KI Mäusen in vivo untersucht werden. KW - Thrombozyt KW - Thrombose KW - Platelet KW - Thrombosis KW - Rezeptor Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-293108 ER - TY - JOUR A1 - Rasmussen, Tim T1 - The potassium efflux system Kef: bacterial protection against toxic electrophilic compounds JF - Membranes N2 - Kef couples the potassium efflux with proton influx in gram-negative bacteria. The resulting acidification of the cytosol efficiently prevents the killing of the bacteria by reactive electrophilic compounds. While other degradation pathways for electrophiles exist, Kef is a short-term response that is crucial for survival. It requires tight regulation since its activation comes with the burden of disturbed homeostasis. Electrophiles, entering the cell, react spontaneously or catalytically with glutathione, which is present at high concentrations in the cytosol. The resulting glutathione conjugates bind to the cytosolic regulatory domain of Kef and trigger activation while the binding of glutathione keeps the system closed. Furthermore, nucleotides can bind to this domain for stabilization or inhibition. The binding of an additional ancillary subunit, called KefF or KefG, to the cytosolic domain is required for full activation. The regulatory domain is termed K+ transport–nucleotide binding (KTN) or regulator of potassium conductance (RCK) domain, and it is also found in potassium uptake systems or channels in other oligomeric arrangements. Bacterial RosB-like transporters and K+ efflux antiporters (KEA) of plants are homologs of Kef but fulfill different functions. In summary, Kef provides an interesting and well-studied example of a highly regulated bacterial transport system. KW - potassium homeostasis KW - monovalent cation:proton antiporter-2 (CPA2) family KW - gram-negative bacteria KW - stress response KW - RCK domain KW - KEA Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-313686 SN - 2077-0375 VL - 13 IS - 5 ER - TY - JOUR A1 - Trujillo‐Viera, Jonathan A1 - El‐Merahbi, Rabih A1 - Schmidt, Vanessa A1 - Karwen, Till A1 - Loza‐Valdes, Angel A1 - Strohmeyer, Akim A1 - Reuter, Saskia A1 - Noh, Minhee A1 - Wit, Magdalena A1 - Hawro, Izabela A1 - Mocek, Sabine A1 - Fey, Christina A1 - Mayer, Alexander E. A1 - Löffler, Mona C. A1 - Wilhelmi, Ilka A1 - Metzger, Marco A1 - Ishikawa, Eri A1 - Yamasaki, Sho A1 - Rau, Monika A1 - Geier, Andreas A1 - Hankir, Mohammed A1 - Seyfried, Florian A1 - Klingenspor, Martin A1 - Sumara, Grzegorz T1 - Protein Kinase D2 drives chylomicron‐mediated lipid transport in the intestine and promotes obesity JF - EMBO Molecular Medicine N2 - Lipids are the most energy‐dense components of the diet, and their overconsumption promotes obesity and diabetes. Dietary fat content has been linked to the lipid processing activity by the intestine and its overall capacity to absorb triglycerides (TG). However, the signaling cascades driving intestinal lipid absorption in response to elevated dietary fat are largely unknown. Here, we describe an unexpected role of the protein kinase D2 (PKD2) in lipid homeostasis. We demonstrate that PKD2 activity promotes chylomicron‐mediated TG transfer in enterocytes. PKD2 increases chylomicron size to enhance the TG secretion on the basolateral side of the mouse and human enterocytes, which is associated with decreased abundance of APOA4. PKD2 activation in intestine also correlates positively with circulating TG in obese human patients. Importantly, deletion, inactivation, or inhibition of PKD2 ameliorates high‐fat diet‐induced obesity and diabetes and improves gut microbiota profile in mice. Taken together, our findings suggest that PKD2 represents a key signaling node promoting dietary fat absorption and may serve as an attractive target for the treatment of obesity. KW - chylomicron KW - fat absorption KW - intestine KW - obesity KW - protein kinase D2/PKD2/PRKD2 Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-239018 VL - 13 IS - 5 ER - TY - JOUR A1 - Maiellaro, Isabella A1 - Lohse, Martin J. A1 - Kitte, Robert J. A1 - Calebiro, Davide T1 - cAMP Signals in Drosophila Motor Neurons Are Confined to Single Synaptic Boutons JF - Cell Reports N2 - The second messenger cyclic AMP (cAMP) plays an important role in synaptic plasticity. Although there is evidence for local control of synaptic transmission and plasticity, it is less clear whether a similar spatial confinement of cAMP signaling exists. Here, we suggest a possible biophysical basis for the site-specific regulation of synaptic plasticity by cAMP, a highly diffusible small molecule that transforms the physiology of synapses in a local and specific manner. By exploiting the octopaminergic system of Drosophila, which mediates structural synaptic plasticity via a cAMP-dependent pathway, we demonstrate the existence of local cAMP signaling compartments of micrometer dimensions within single motor neurons. In addition, we provide evidence that heterogeneous octopamine receptor localization, coupled with local differences in phosphodiesterase activity, underlies the observed differences in cAMP signaling in the axon, cell body, and boutons. KW - cAMP KW - synaptic plasticity KW - PDE KW - octopamine KW - FRET KW - active zone KW - dunce KW - GPCR Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-162324 VL - 17 IS - 5 ER - TY - JOUR A1 - Weigand, Isabel A1 - Ronchi, Cristina L. A1 - Vanselow, Jens T. A1 - Bathon, Kerstin A1 - Lenz, Kerstin A1 - Herterich, Sabine A1 - Schlosser, Andreas A1 - Kroiss, Matthias A1 - Fassnacht, Martin A1 - Calebiro, Davide A1 - Sbiera, Silviu T1 - PKA Cα subunit mutation triggers caspase-dependent RIIβ subunit degradation via Ser\(^{114}\) phosphorylation JF - Science Advances N2 - Mutations in the PRKACA gene are the most frequent cause of cortisol-producing adrenocortical adenomas leading to Cushing’s syndrome. PRKACA encodes for the catalytic subunit α of protein kinase A (PKA). We already showed that PRKACA mutations lead to impairment of regulatory (R) subunit binding. Furthermore, PRKACA mutations are associated with reduced RIIβ protein levels; however, the mechanisms leading to reduced RIIβ levels are presently unknown. Here, we investigate the effects of the most frequent PRKACA mutation, L206R, on regulatory subunit stability. We find that Ser\(^{114}\) phosphorylation of RIIβ is required for its degradation, mediated by caspase 16. Last, we show that the resulting reduction in RIIβ protein levels leads to increased cortisol secretion in adrenocortical cells. These findings reveal the molecular mechanisms and pathophysiological relevance of the R subunit degradation caused by PRKACA mutations, adding another dimension to the deregulation of PKA signaling caused by PRKACA mutations in adrenal Cushing’s syndrome. KW - mutation triggers KW - phosphorylation Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-270445 VL - 7 IS - 8 ER - TY - JOUR A1 - Imam, Nasir A1 - Choudhury, Susobhan A1 - Heinze, Katrin G. A1 - Schindelin, Hermann T1 - Differential modulation of collybistin conformational dynamics by the closely related GTPases Cdc42 and TC10 JF - Frontiers in Synaptic Neuroscience N2 - Interneuronal synaptic transmission relies on the proper spatial organization of presynaptic neurotransmitter release and its reception on the postsynaptic side by cognate neurotransmitter receptors. Neurotransmitter receptors are incorporated into and arranged within the plasma membrane with the assistance of scaffolding and adaptor proteins. At inhibitory GABAergic postsynapses, collybistin, a neuronal adaptor protein, recruits the scaffolding protein gephyrin and interacts with various neuronal factors including cell adhesion proteins of the neuroligin family, the GABAA receptor α2-subunit and the closely related small GTPases Cdc42 and TC10 (RhoQ). Most collybistin splice variants harbor an N-terminal SH3 domain and exist in an autoinhibited/closed state. Cdc42 and TC10, despite sharing 67.4% amino acid sequence identity, interact differently with collybistin. Here, we delineate the molecular basis of the collybistin conformational activation induced by TC10 with the aid of recently developed collybistin FRET sensors. Time-resolved fluorescence-based FRET measurements reveal that TC10 binds to closed/inactive collybistin leading to relief of its autoinhibition, contrary to Cdc42, which only interacts with collybistin when forced into an open state by the introduction of mutations destabilizing the closed state of collybistin. Taken together, our data describe a TC10-driven signaling mechanism in which collybistin switches from its autoinhibited closed state to an open/active state. KW - autoinhibition KW - fluorescence resonance energy transfer (FRET) KW - gephyrin KW - guanine nucleotide exchange factor (GEF) KW - inhibitory postsynapse KW - Rho GTPase Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-282816 SN - 1663-3563 VL - 14 ER - TY - THES A1 - Khayenko, Vladimir T1 - Functional peptide-based probes for the visualization of inhibitory synapses T1 - Funktionelle peptidbasierte Sonden zur Visualisierung von hemmenden Synapsen N2 - Short functional peptidic probes can maximize the potential of high-end microscopy techniques and multiplex imaging assays and provide new insights into normal and aberrant molecular, cellular and tissue function. Particularly, the visualization of inhibitory synapses requires protocol tailoring for different sample types and imaging techniques and relies either on genetic manipulation or on antibodies that underperform in tissue immunofluorescence. Starting from an endogenous activity-related ligand of gephyrin, a universal marker of the inhibitory post-synapse, I developed a short peptidic multivalent binder with exceptional affinity and selectivity to gephyrin. By tailoring fluorophores to the binder, I have obtained Sylite, a probe for the visualization of inhibitory synapses, with an outstanding signal-to-background ratio, that bests the “gold standard” gephyrin antibodies both in selectivity and in tissue immunofluorescence. In tissue Sylite benefits from simplified handling, provides robust synaptic labeling in record-short time and, unlike antibodies, is not affected by staining artefacts. In super-resolution microscopy Sylite precisely localizes the post-synapse and enables accurate pre- to post-synapse measurements. Combined with complimentary tracing techniques Sylite reveals inhibitory connectivity and profiles inhibitory inputs and synapse sizes of excitatory and inhibitory neurons in the periaqueductal gray brain region. Lastly, upon probe optimization for live cell application and with the help of novel thiol-reactive cell penetrating peptide I have visualized inhibitory synapses in living neurons. Taken together, my work provided a versatile probe for conventional and super-resolution microscopy and a workflow for the development and application of similar compact functional synthetic probes. N2 - Kurze funktionelle peptidische Sonden können das Potenzial von High-End-Mikroskopietechniken und Multiplex-Imaging-Assays maximieren und neue Erkenntnisse über normale und abweichende Molekulare-, Zelluläre- und Gewebefunktionen liefern. Insbesondere die Visualisierung inhibitorischer Synapsen erfordert eine Anpassung des Protokolls an verschiedene Probentypen und Bildgebungsverfahren und ist entweder auf genetische Manipulationen oder auf Antikörper angewiesen, die in der Gewebeimmunfluoreszenz unterdurchschnittlich abschneiden. Ausgehend von einem endogenen aktivitätsbezogenen Liganden von Gephyrin, einem universellen Marker der hemmenden Postsynapse, habe ich einen kurzen peptidischen multivalenten Binder mit außergewöhnlicher Affinität und Selektivität zu Gephyrin entwickelt. Durch die Anpassung von Fluorophoren an das Bindemittel habe ich Sylite erhalten, eine Sonde für die Visualisierung inhibitorischer Synapsen mit einem hervorragenden Signal-Hintergrund-Verhältnis, das die "Goldstandard"-Gephyrin-Antikörper sowohl in der Selektivität als auch in der Gewebe-Immunfluoreszenz übertrifft. Im Gewebe profitiert Sylite von einer vereinfachten Handhabung, bietet eine robuste synaptische Markierung in rekordverdächtig kurzer Zeit und wird im Gegensatz zu Antikörpern nicht durch Färbungsartefakte beeinträchtigt. In der Super-Resolution-Mikroskopie lokalisiert Sylite präzise die Post-Synapse und ermöglicht genaue Messungen von Prä- zu Postsynapse. In Kombination mit ergänzenden Tracing-Techniken deckt Sylite die hemmende Konnektivität auf und erstellt Profile der hemmenden Eingänge und Synapsengrößen von erregenden und hemmenden Neuronen in der periaquäduktalen Grau Hirnregion. Schließlich habe ich nach Optimierung der Sonde für die Anwendung in lebenden Zellen und mit Hilfe eines neuartigen thiolreaktiven zelldurchdringenden Peptids hemmende Synapsen in lebenden Neuronen visualisiert. Insgesamt lieferte meine Arbeit eine vielseitige Sonde für konventionelle und superauflösende Mikroskopie und einen Arbeitsablauf für die Entwicklung und Anwendung ähnlicher kompakter funktioneller synthetischer Sonden. KW - Fluoreszenzsonde KW - Peptidsynthese KW - Neurowissenschaften KW - Inhibitorische Synapse KW - Gephyrin KW - Peptide KW - Fluorescent probes KW - Neuroscience KW - Inhibitory synapse KW - Super-Resolution Microscopy KW - Tissue staining Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-320438 ER - TY - JOUR A1 - Bakirci, Ezgi A1 - Frank, Andreas A1 - Gumbel, Simon A1 - Otto, Paul F. A1 - Fürsattel, Eva A1 - Tessmer, Ingrid A1 - Schmidt, Hans‐Werner A1 - Dalton, Paul D. T1 - Melt Electrowriting of Amphiphilic Physically Crosslinked Segmented Copolymers JF - Macromolecular Chemistry and Physics N2 - Various (AB)\(_{n}\) and (ABAC)\(_{n}\) segmented copolymers with hydrophilic and hydrophobic segments are processed via melt electrowriting (MEW). Two different (AB)\(_{n}\) segmented copolymers composed of bisurea segments and hydrophobic poly(dimethyl siloxane) (PDMS) or hydrophilic poly(propylene oxide)-poly(ethylene oxide)-poly(propylene oxide) (PPO-PEG-PPO) segments, while the amphiphilic (ABAC)\(_{n}\) segmented copolymers consist of bisurea segments in the combination of hydrophobic PDMS segments and hydrophilic PPO-PEG-PPO segments with different ratios, are explored. All copolymer compositions are processed using the same conditions, including nozzle temperature, applied voltage, and collector distance, while changes in applied pressure and collector speed altered the fiber diameter in the range of 7 and 60 µm. All copolymers showed excellent processability with MEW, well-controlled fiber stacking, and inter-layer bonding. Notably, the surfaces of all four copolymer fibers are very smooth when visualized using scanning electron microscopy. However, the fibers show different roughness demonstrated with atomic force microscopy. The non-cytotoxic copolymers increased L929 fibroblast attachment with increasing PDMS content while the different copolymer compositions result in a spectrum of physical properties. KW - melt electrowriting KW - 3D printing KW - additive manufacturing KW - electrohydrodynamics Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-257572 VL - 222 IS - 22 ER - TY - JOUR A1 - Bothe, Sebastian A1 - Hänzelmann, Petra A1 - Böhler, Stephan A1 - Kehrein, Josef A1 - Zehe, Markus A1 - Wiedemann, Christoph A1 - Hellmich, Ute A. A1 - Brenk, Ruth A1 - Schindelin, Hermann A1 - Sotriffer, Christoph T1 - Fragment screening using biolayer interferometry reveals ligands targeting the SHP-motif binding site of the AAA+ ATPase p97 JF - Communications Chemistry N2 - Biosensor techniques have become increasingly important for fragment-based drug discovery during the last years. The AAA+ ATPase p97 is an essential protein with key roles in protein homeostasis and a possible target for cancer chemotherapy. Currently available p97 inhibitors address its ATPase activity and globally impair p97-mediated processes. In contrast, inhibition of cofactor binding to the N-domain by a protein-protein-interaction inhibitor would enable the selective targeting of specific p97 functions. Here, we describe a biolayer interferometry-based fragment screen targeting the N-domain of p97 and demonstrate that a region known as SHP-motif binding site can be targeted with small molecules. Guided by molecular dynamics simulations, the binding sites of selected screening hits were postulated and experimentally validated using protein- and ligand-based NMR techniques, as well as X-ray crystallography, ultimately resulting in the first structure of a small molecule in complex with the N-domain of p97. The identified fragments provide insights into how this region could be targeted and present first chemical starting points for the development of a protein-protein interaction inhibitor preventing the binding of selected cofactors to p97. KW - fragment screening KW - AAA+ ATPase p97 KW - biosensor Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-300821 VL - 5 IS - 1 ER - TY - JOUR A1 - Reuter, Isabel A1 - Jäckels, Jana A1 - Kneitz, Susanne A1 - Kuper, Jochen A1 - Lesch, Klaus-Peter A1 - Lillesaar, Christina T1 - Fgf3 is crucial for the generation of monoaminergic cerebrospinal fluid contacting cells in zebrafish JF - Biology Open N2 - In most vertebrates, including zebrafish, the hypothalamic serotonergic cerebrospinal fluid-contacting (CSF-c) cells constitute a prominent population. In contrast to the hindbrain serotonergic neurons, little is known about the development and function of these cells. Here, we identify fibroblast growth factor (Fgf)3 as the main Fgf ligand controlling the ontogeny of serotonergic CSF-c cells. We show that fgf3 positively regulates the number of serotonergic CSF-c cells, as well as a subset of dopaminergic and neuroendocrine cells in the posterior hypothalamus via control of proliferation and cell survival. Further, expression of the ETS-domain transcription factor etv5b is downregulated after fgf3 impairment. Previous findings identified etv5b as critical for the proliferation of serotonergic progenitors in the hypothalamus, and therefore we now suggest that Fgf3 acts via etv5b during early development to ultimately control the number of mature serotonergic CSF-c cells. Moreover, our analysis of the developing hypothalamic transcriptome shows that the expression of fgf3 is upregulated upon fgf3 loss-of-function, suggesting activation of a self-compensatory mechanism. Together, these results highlight Fgf3 in a novel context as part of a signalling pathway of critical importance for hypothalamic development. KW - Fgf-signalling KW - Serotonin KW - Dopamine KW - Hypothalamus KW - Central nervous system Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-200749 VL - 8 ER -