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Metagenomic analysis of the outdoor dust microbiomes: a case study from Abu Dhabi, UAE

Zitieren Sie bitte immer diese URN: urn:nbn:de:bvb:20-opus-304391
  • Outdoor dust covers a shattered range of microbial agents from land over transportation, human microbial flora, which includes pathogen and commensals, and airborne from the environment. Dust aerosols are rich in bacterial communities that have a major impact on human health and living environments. In this study, outdoor samples from roadside barricades, safety walls, and fences (18 samples) were collected from Abu Dhabi, UAE and bacterial diversity was assessed through a 16S rRNA amplicon next generation sequencing approach. Clean data fromOutdoor dust covers a shattered range of microbial agents from land over transportation, human microbial flora, which includes pathogen and commensals, and airborne from the environment. Dust aerosols are rich in bacterial communities that have a major impact on human health and living environments. In this study, outdoor samples from roadside barricades, safety walls, and fences (18 samples) were collected from Abu Dhabi, UAE and bacterial diversity was assessed through a 16S rRNA amplicon next generation sequencing approach. Clean data from HiSeq produced 1,099,892 total reads pairs for 18 samples. For all samples, taxonomic classifications were assigned to the OTUs (operational taxonomic units) representative sequence using the Ribosomal Database Project database. Analysis such as alpha diversity, beta diversity, differential species analysis, and species relative abundance were performed in the clustering of samples and a functional profile heat map was obtained from the OTUs by using bioinformatics tools. A total of 2814 OTUs were identified from those samples with a coverage of more than 99%. In the phylum, all 18 samples had most of the bacterial groups such as Actinobacteria, Proteobacteria, Firmicutes, and Bacteroidetes. Twelve samples had Propionibacteria acnes and were mainly found in RD16 and RD3. Major bacteria species such as Propionibacteria acnes, Bacillus persicus, and Staphylococcus captis were found in all samples. Most of the samples had Streptococcus mitis, Staphylococcus capitis. and Nafulsella turpanensis and Enhydrobacter aerosaccus was part of the normal microbes of the skin. Salinimicrobium sp., Bacillus alkalisediminis, and Bacillus persicus are halophilic bacteria found in sediments. The heat map clustered the samples and species in vertical and horizontal classification, which represents the relationship between the samples and bacterial diversity. The heat map for the functional profile had high properties of amino acids, carbohydrate, and cofactor and vitamin metabolisms of all bacterial species from all samples. Taken together, our analyses are very relevant from the perspective of out-door air quality, airborne diseases, and epidemics, with broader implications for health safety and monitoring.zeige mehrzeige weniger

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Autor(en): Lina Maloukh, Yousef Nazzal, Alagappan Kumarappan, Fares Howari, Lakshmi Kesari Ambika, Rihab Yahmadi, Manish Sharma, Jibran Iqbal, Ahmed A. Al-Taani, Imen Ben Salem, Cijo M. Xavier, Muhamad Naseem
URN:urn:nbn:de:bvb:20-opus-304391
Dokumentart:Artikel / Aufsatz in einer Zeitschrift
Institute der Universität:Fakultät für Biologie / Theodor-Boveri-Institut für Biowissenschaften
Sprache der Veröffentlichung:Englisch
Titel des übergeordneten Werkes / der Zeitschrift (Englisch):Atmosphere
ISSN:2073-4433
Erscheinungsjahr:2023
Band / Jahrgang:14
Heft / Ausgabe:2
Aufsatznummer:327
Originalveröffentlichung / Quelle:Atmosphere (2023) 14:2, 327. https://doi.org/10.3390/atmos14020327
DOI:https://doi.org/10.3390/atmos14020327
Allgemeine fachliche Zuordnung (DDC-Klassifikation):5 Naturwissenschaften und Mathematik / 57 Biowissenschaften; Biologie / 570 Biowissenschaften; Biologie
Freie Schlagwort(e):GIS; dust microbiomes; metagenomics; microbial diversity; pollution
Datum der Freischaltung:13.02.2024
Datum der Erstveröffentlichung:07.02.2023
Lizenz (Deutsch):License LogoCC BY: Creative-Commons-Lizenz: Namensnennung 4.0 International