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SMART: recent updates, new developments and status in 2020

Zitieren Sie bitte immer diese URN: urn:nbn:de:bvb:20-opus-363816
  • SMART (Simple Modular Architecture Research Tool) is a web resource (https://smart.embl.de) for the identification and annotation of protein domains and the analysis of protein domain architectures. SMART version 9 contains manually curatedmodels formore than 1300 protein domains, with a topical set of 68 new models added since our last update article (1). All the new models are for diverse recombinase families and subfamilies and as a set they provide a comprehensive overview of mobile element recombinases namely transposase, integrase,SMART (Simple Modular Architecture Research Tool) is a web resource (https://smart.embl.de) for the identification and annotation of protein domains and the analysis of protein domain architectures. SMART version 9 contains manually curatedmodels formore than 1300 protein domains, with a topical set of 68 new models added since our last update article (1). All the new models are for diverse recombinase families and subfamilies and as a set they provide a comprehensive overview of mobile element recombinases namely transposase, integrase, relaxase, resolvase, cas1 casposase and Xer like cellular recombinase. Further updates include the synchronization of the underlying protein databases with UniProt (2), Ensembl (3) and STRING (4), greatly increasing the total number of annotated domains and other protein features available in architecture analysis mode. Furthermore, SMART's vector-based protein display engine has been extended and updated to use the latest web technologies and the domain architecture analysis components have been optimized to handle the increased number of protein features available.zeige mehrzeige weniger

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Metadaten
Autor(en): Ivica Letunic, Supriya Khedkar, Peer Bork
URN:urn:nbn:de:bvb:20-opus-363816
Dokumentart:Artikel / Aufsatz in einer Zeitschrift
Institute der Universität:Fakultät für Biologie / Theodor-Boveri-Institut für Biowissenschaften
Sprache der Veröffentlichung:Englisch
Titel des übergeordneten Werkes / der Zeitschrift (Englisch):Nucleic Acids Research
Erscheinungsjahr:2021
Band / Jahrgang:49
Heft / Ausgabe:D1
Seitenangabe:D458-D460
Originalveröffentlichung / Quelle:Nucleic Acids Research (2021) 49:D1, D458-D460. DOI: 10.1093/nar/gkaa937
DOI:https://doi.org/10.1093/nar/gkaa937
PubMed-ID:https://pubmed.ncbi.nlm.nih.gov/33104802
Allgemeine fachliche Zuordnung (DDC-Klassifikation):5 Naturwissenschaften und Mathematik / 57 Biowissenschaften; Biologie / 570 Biowissenschaften; Biologie
Freie Schlagwort(e):SMART; SMART version 9; protein domain architectures; protein domains
Datum der Freischaltung:20.06.2024
EU-Projektnummer / Contract (GA) number:669830
OpenAIRE:OpenAIRE
Lizenz (Deutsch):License LogoCC BY: Creative-Commons-Lizenz: Namensnennung 4.0 International