@phdthesis{Schlegel2021,
  author    = {Schlegel, Jan},
  title     = {Super-Resolution Microscopy of Sphingolipids and Protein Nanodomains},
  doi       = {10.25972/OPUS-22959},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-229596},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2021},
  abstract  = {The development of cellular life on earth is coupled to the formation of lipid-based biological membranes. Although many tools to analyze their biophysical properties already exist, their variety and number is still relatively small compared to the field of protein studies. One reason for this, is their small size and complex assembly into an asymmetric tightly packed lipid bilayer showing characteristics of a two-dimensional heterogenous fluid. Since membranes are capable to form dynamic, nanoscopic domains, enriched in sphingolipids and cholesterol, their detailed investigation is limited to techniques which access information below the diffraction limit of light. In this work, I aimed to extend, optimize and compare three different labeling approaches for sphingolipids and their subsequent analysis by the single-molecule localization microscopy (SMLM) technique direct stochastic optical reconstruction microscopy (dSTORM). First, I applied classical immunofluorescence by immunoglobulin G (IgG) antibody labeling to detect and quantify sphingolipid nanodomains in the plasma membrane of eukaryotic cells. I was able to identify and characterize ceramide-rich platforms (CRPs) with a size of ~ 75nm on the basal and apical membrane of different cell lines. Next, I used click-chemistry to characterize sphingolipid analogs in living and fixed cells. By using a combination of fluorescence microscopy and anisotropy experiments, I analyzed their accessibility and configuration in the plasma membrane, respectively. Azide-modified, short fatty acid side chains, were accessible to membrane impermeable dyes and localized outside the hydrophobic membrane core. In contrast, azide moieties at the end of longer fatty acid side chains were less accessible and conjugated dyes localized deeper within the plasma membrane. By introducing photo-crosslinkable diazirine groups or chemically addressable amine groups, I developed methods to improve their immobilization required for dSTORM. Finally, I harnessed the specific binding characteristics of non-toxic shiga toxin B subunits (STxBs) and cholera toxin B subunits (CTxBs) to label and quantify glycosphingolipid nanodomains in the context of Neisseria meningitidis infection. Under pyhsiological conditions, these glycosphingolipids were distributed homogenously in the plasma membrane but upon bacterial infection CTxB detectable gangliosides accumulated around invasive Neisseria meningitidis. I was able to highlight the importance of cell cycle dependent glycosphingolipid expression for the invasion process. Blocking membrane accessible sugar headgroups by pretreatment with CTxB significantly reduced the number of invasive bacteria which confirmed the importance of gangliosides for bacterial uptake into cells. Based on my results, it can be concluded that labeling of sphingolipids should be carefully optimized depending on the research question and applied microscopy technique. In particular, I was able to develop new tools and protocols which enable the characterization of sphingolipid nanodomains by dSTORM for all three labeling approaches.},
  subject      = {Sphingolipide},
  language  = {en}
}
@phdthesis{Panzer2022,
  author    = {Panzer, Sabine},
  title     = {Spotlight on Fungal Rhodopsins: A Microscopic and Electrophysiological Study},
  doi       = {10.25972/OPUS-27185},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-271859},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2022},
  abstract  = {Microbial rhodopsins are abundant membrane proteins often capable of ion transport and are found in all three domains of life. Thus, many fungi, especially phyto-associated or phyto-pathogenic ones, contain these green-light-sensing photoreceptors. Proteins that perceive other wavelengths are often well characterized in terms of their impact on fungal biology whereas little is known about the function of fungal rhodopsins. In this work, five fungal rhodopsins, UmOps1 and UmOps2 from the corn smut Ustilago maydis as well as ApOps1, ApOps2 and ApOps3 from the black yeast Aureobasidium pullulans, were characterized electrophysiologically using mammalian expression systems and the patch-clamp technique to explore their ion transport properties. The latter three were modified using a membrane trafficking cassette, termed "2.0" that consists of the lucy rho motif, two Kir2.1 Golgi apparatus trafficking signals and a Kir2.1 endoplasmic reticulum export signal, what resulted in better plasma membrane localization. Rhodopsin mutants were created to identify amino acid residues that are key players in the ion transport process. Current enhancement in the presence of weak organic acids, that was already described before for the fungal rhodopsin CarO from Fusarium fujikuroi (Garc{\´i}a-Mart{\´i}nez et al., 2015; Adam et al., 2018), was investigated for the U. maydis rhodopsins as well as for ApOps2 by supplementing acetate in the patch-clamp electrolyte solutions. All five rhodopsins were found to be proton pumps unidirectionally transporting protons out of the cytosol upon green-light exposure with every rhodopsin exhibiting special features or unique characteristics in terms of the photocurrents. To name just a few, UmOps1, for example, showed a striking pH-dependency with massive enhancement of pump currents in the presence of extracellular acidic pH. Moreover, especially ApOps2 and ApOps3 showed very high current densities, however, the ones of ApOps3 were impaired when exchanging intracellular sodium to cesium. Concerning the mutations, it was found, that the electron releasing group in UmOps1 seems to be involved in the striking pH effect and that the mutation of the proton donor site resulted in almost unfunctional proteins. Moreover, a conserved arginine inside ApOps2 was mutated to turn the proton pump into a channel. Regarding the effect of weak organic acids, acetate was able to induce enhanced pump currents in UmOps1 and ApOps2, but not in UmOps2. Due to the capability of current production upon light illumination, microbial rhodopsins are used in the research field of optogenetics that aims to control neuronal activity by light. ApOps2 was used to test its functionality in differentiated NG108-15 cells addressing the question whether it is a promising candidate that can be used as an optogenetic tool. Indeed, this rhodopsin could be functionally expressed in this experimental system. Furthermore, microscopic studies were done to elucidate the localization of selected rhodopsins in fungal cells. Therefore, conventional (confocal laser scanning or structured illumination microscopy) as well as novel super-resolution techniques (expansion or correlated light and electron microscopy) were used. This was done on U. maydis sporidia, the yeast-like form of this fungus, via eGFP-tagged UmOps1 or UmOps2 expressing strains. Moreover, CarO-eYFP expressing F. fujikuroi was imaged microscopically to confirm the plasma membrane and tonoplast localization (Garc{\´i}a-Mart{\´i}nez et al., 2015) with the help of counterstaining experiments. UmOps1 was found to reside in the plasma membrane, UmOps2 localized to the tonoplast and CarO was indeed found in both of these localizations. This work gains further insight into rhodopsin functions and paves the way for further research in terms of the biological role of rhodopsins in fungal life cycles.},
  subject      = {Opsin},
  language  = {en}
}
@phdthesis{Voss2021,
  author    = {Voß, Lena Johanna},
  title     = {{\"A}nderungen der Membranspannung und der Osmolarit{\"a}t als Ausl{\"o}ser f{\"u}r Calciumsignale in Pflanzen - Studien an Schließzellen von Nicotiana tabacum und Polypodium vulgare},
  doi       = {10.25972/OPUS-21963},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-219639},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2021},
  abstract  = {Stomata sind kleine Poren in der Blattoberfl{\"a}che, die Pflanzen eine Anpassung ihres Wasserhaushalts an sich {\"a}ndernde Umweltbedingungen erm{\"o}glichen. Die {\"O}ffnungsweite der Stomata wird durch den Turgordruck der Schließzellen bestimmt, der wiederum durch Ionenfl{\"u}sse {\"u}ber die Membranen der Zelle reguliert wird. Ein Netzwerk von Signaltransduktionswegen sorgt daf{\"u}r, dass Pflanzen die Stomabewegungen an die Umgebungsbedingungen anpassen k{\"o}nnen. Viele molekulare Komponenten dieser Signaltransduktionketten in Schließzellen von Angiospermen sind inzwischen bekannt und Calcium spielt darin als Signalmolek{\"u}l eine wichtige Rolle. Weitgehend unbekannt sind dagegen die Mechanismen, die zur Erzeugung von transienten Erh{\"o}hungen der Calciumkonzentration f{\"u}hren. Auch die molekularen Grundlagen der Regulierung der Stomaweite in Nicht-Angiospermen-Arten sind bisher nur wenig verstanden. Um zur Aufkl{\"a}rung dieser Fragestellungen beizutragen, wurden in dieser Arbeit Mechanismen zur Erh{\"o}hungen der cytosolischen Calciumkonzentration sowie elektrophysiologische Eigenschaften von Schließzellen untersucht. Der Fokus lag hierbei insbesondere auf der Visualisierung cytosolischer Calciumsignale in Schließzellen. Im ersten Teil der Arbeit wurde durch die Applikation hyperpolarisierender Spannungspulse mittels TEVC (Two Electrode Voltage Clamp) gezielt eine Erh{\"o}hung der cytosolischen Calciumkonzentration in einzelnen Schließzellen von Nicotiana tabacum ausgel{\"o}st. Um die Dynamik der cytosolischen Calciumkonzentration dabei zeitlich und r{\"a}umlich hoch aufgel{\"o}st zu visualisieren, wurde simultan zu den elektrophysiologischen Messungen ein Spinning-Disc-System f{\"u}r konfokale Aufnahmen eingesetzt. W{\"a}hrend der Applikation hyperpolarisierender Spannungspulse wurde eine transiente Vergr{\"o}ßerung des cytosolischen Volumens beobachtet. Diese l{\"a}sst sich durch einen osmotisch getriebenen Wasserfluss erkl{\"a}ren, der durch die Ver{\"a}nderung der Ionenkonzentration im Cytosol verursacht wird. Diese wiederum wird durch die spannungsabh{\"a}ngige Aktivierung einw{\"a}rtsgleichrichtender Kaliumkan{\"a}le in der Plasmamembran der Schließzellen und durch den Kompensationsstrom der eingestochenen Mikroelektrode hervorgerufen. Mit Hilfe des calciumsensitiven Farbstoffs Fura-2 konnte gezeigt werden, dass die Erh{\"o}hung der freien cytosolischen Calciumkonzentration w{\"a}hrend der Applikation hyperpolarisierender Spannungspulse durch zwei Mechanismen verursacht wird. Der erste Mechanismus ist die Aktivierung hyperpolarisationsaktivierter, calciumpermeabler Kan{\"a}le (HACCs) in der Plasmamembran, die schon 1998 von Grabov \& Blatt beschrieben wurde. Zus{\"a}tzlich zu diesem Mechanismus der Calciumfreisetzung, konnte ein zweiter bislang unbekannter Mechanismus aufgedeckt werden, bei dem Calcium aus intrazellul{\"a}ren Speichern in das Cytosol freigesetzt wird. Dieser Mechanismus h{\"a}ngt mit der oben beschriebenen Vergr{\"o}ßerung des cytosolischen Volumens zusammen und ist wahrscheinlich durch die {\"A}nderungen der mechanischen Spannung der Membran bzw. der Osmolarit{\"a}t innerhalb der Zelle bedingt. Diese k{\"o}nnten zu einer Aktivierung mechanosensitiver, calciumpermeabler Kan{\"a}le f{\"u}hren. Der zweite Teil der Arbeit besch{\"a}ftigt sich mit den molekularen Grundlagen der Regulierung von Stomata in Nicht-Angiospermen. In Schließzellen von Polypodium vulgare konnten durch die Anwendung der TEVC-Technik {\"a}hnliche spannungsabh{\"a}ngige Str{\"o}me {\"u}ber die Plasmamembran gemessen werden wie in Angiospermen. Ebenso wurden durch die Applikation hyperpolarisierender Spannungspulse an Schließzellen von Polypodium und Asplenium Erh{\"o}hungen der cytosolischen Calciumkonzentration ausgel{\"o}st, die auf die Existenz spannungsabh{\"a}ngiger, calciumpermeabler Kan{\"a}le in der Plasmamembran hinweisen. Die Diffusion von Fluoreszenzfarbstoffen in die Nachbarschließzellen nach der iontophoretischen Beladung in Polypodium, Asplenium, Ceratopteris und Selaginella zeigte, dass in diesen Arten eine symplastische Verbindung zwischen benachbarten Schließzellen besteht, die an Schließzellen von Angiospermen bisher nicht beobachtet werden konnte. Anhand elektronenmikroskopischer Aufnahmen von Polypodium glycyrrhiza Schließzellen konnte gezeigt werden, dass diese Verbindung wahrscheinlich durch Plasmodesmata zwischen benachbarten Schließzellen gebildet wird. Durch die Analyse der Calciumdynamik in benachbarten Schließzellen nach hyperpolarisierenden Spannungspulsen stellte sich heraus, dass die Calciumhom{\"o}ostase trotz symplastischer Verbindung in beiden Schließzellen unabh{\"a}ngig voneinander reguliert zu werden scheint. Im Rahmen der Untersuchungen an Farnschließzellen wurde desweiteren eine Methode zur Applikation von ABA etabliert, die es erlaubt mithilfe von Mikroelektroden das Phytohormon iontophoretisch in den Apoplasten zu laden. Im Gegensatz zu den Schließzellen von Nicotiana tabacum, die auf eine so durchgef{\"u}hrte ABA-Applikation mit dem Stomaschluss reagierten, wurde in Polypodium vulgare auf diese Weise kein Stomaschluss ausgel{\"o}st. Da die ABA-Antwort der Farnstomata aber auch von anderen Faktoren wie Wachstumsbedingungen abh{\"a}ngig ist (H{\~o}rak et al., 2017), kann eine ABA-Responsivit{\"a}t in dieser Farnart trotzdem nicht vollkommen ausgeschlossen werden. Die Freisetzung von Calcium aus intrazellul{\"a}ren Speichern, wie sie in dieser Arbeit gezeigt wurde, k{\"o}nnte eine wichtige Rolle bei der Regulierung der Stomaweite spielen. Zur Aufkl{\"a}rung dieser Fragestellung w{\"a}re die Identifizierung der Kan{\"a}le, die an der osmotisch/mechanisch induzierten Calciumfreisetzung aus internen Speichern beteiligt sind, von großem Interesse. Weiterf{\"u}hrende Studien an Schließzellen von Farnen k{\"o}nnten die physiologische Bedeutung der aus Angiospermen bekannten Ionenkan{\"a}le f{\"u}r die Stomabewegungen in evolution{\"a}r {\"a}lteren Landpflanzen aufkl{\"a}ren und so maßgeblich zum Verst{\"a}ndnis der Evolution der Regulierunsgmechanismen von Stomata beitragen. Außerdem stellt sich die Frage, welche Rolle die hier gezeigte symplastische Verbindung der Nachbarschließzellen durch Plasmodesmata f{\"u}r die Funktion der Stomata spielt.},
  subject      = {Schließzelle},
  language  = {de}
}
@phdthesis{Trinks2024,
  author    = {Trinks, Nora Isabel},
  title     = {Super-resolution fluorescence microscopic visualization and analysis of interactions between human immune cells and \(Aspergillus\) \(fumigatus\)},
  doi       = {10.25972/OPUS-26640},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-266407},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2024},
  abstract  = {The mold Aspergillus fumigatus (A. fumigatus) is known as human pathogen and can cause life-threatening infections in humans with a weakened immune system. This is a known complication in patients receiving glucocorticoids, e.g. after hematopoietic stem cell transplantation or solid organ transplantation. Although research in the field of immune cell/fungus interaction has discovered key strategies how immune cells fight against infectious fungi, our knowledge is still incomplete. In order to develop effective treatment options against fungal infections, a detailed understanding of their interactions is crucial. Thus, visualization of immune cell and fungus is an excellent approach to gain further knowledge. For a detailed view of such interaction processes, a high optical resolution on nanometer scale is required. There is a variety of super resolution microscopy techniques, enabling fluorescence imaging beyond the diffraction limit. This work combines the use of three complementary super resolution microscopy techniques, in order to study immune cell/fungus interaction from different points of view. Aim of this work is the introduction of the recently invented imaging technique named expansion microscopy (ExM) for the study of immune cell/fungus interactions. The core aspect of this method is the physical magnification of the specimen, which increases the distance between protein structures that are close to each other and which can therefore be imaged separately. The simultaneous magnification of primary human natural killer (NK) cells and A. fumigatus hyphae was established in this work using ExM. Reorganization of cytoskeletal components of interacting NK cells was demonstrated here, by expansion of the immunological synapse (IS), formed between NK cells and A. fumigatus. In addition, reorganization of the microtubule-organizing center (MTOC) towards fungal hyphae and an accumulation of actin at the IS has been observed. Furthermore, ExM has been used to visualize lytic granules of NK cells after degranulation. After magnification of the specimen, lysosome associated protein 1 (LAMP1) was shown to surround perforin. In absence of the plasma membrane-exposed degranulation marker LAMP1, a "ring-shaped" structure was often observed for fluorescently labeled perforin. Volume calculation of lytic granules demonstrated the benefit of ExM. Compared to pre-expansion images, analyses of post-expansion images showed two volume distributions for degranulated and non-degranulated NK cells. In addition, this work emphasizes the importance of determining the expansion factor for a structure in each species, as variations of expansion factors have been observed. This factor, as well as possible sample distortions should be considered, when ExM is used in order to analyze the interaction between two species. A second focus of this work is the visualization of a chimeric antigen receptor (CAR), targeting an epitope on the cell wall of A. fumigatus. Structured illumination microscopy (SIM) revealed that the CAR is part of the immunological synapse of primary human CAR T cells and CAR-NK-92 cells. At the interaction site, an accumulation of the CAR was observed, as well as the presence of perforin. CAR accumulation at fungal hyphae was further demonstrated by automated live cell imaging of interacting CAR-NK-92 cells, expressing a fluorescent fusion protein. Additionally, the use of direct stochastic optical reconstruction microscopy (dSTORM) gave first insights in CAR expression levels on the basal membrane of CAR-NK-92 cells, with single molecule sensitivity. CAR cluster analyses displayed a heterogeneous CAR density on the basal membrane of transfected NK 92 cells. In summary, this work provides insights into the application of ExM for studying the interaction of primary human NK cells and A. fumigatus for the first time. Furthermore, this thesis presents first insights regarding the characterization of an A. fumigatus-targeting CAR, by applying super-resolution fluorescence microscopy, like SIM and dSTORM.},
  subject      = {Mikroskopie},
  language  = {en}
}