@phdthesis{Zieschang2014,
  author    = {Zieschang, Fabian},
  title     = {Energy and Electron Transfer Studies of Triarylamine-based Dendrimers and Cascades},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-101866},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2014},
  abstract  = {In this work the synthesis of dendritic macromolecules and small redox cascades was reported and studies of their energy and electron transfer properties discussed. The chromophores in the dendrimers and the redox cascades are linked via triazoles, which were built up by CuAAC. Thereby, a synthetic concept based on building blocks was implemented, which allowed the exchange of all basic components. Resulting structures include dendrimers composed exclusively of TAAs (G1-G3), dendrimers with an incorporated spirobifluorene core (spiro-G1 and spiro-G2) and the donor-acceptor dendrimer D-A-G1, in which the terminal groups are exchanged by NDIs. Furthermore, a series of model compounds was synthesised in order to achieve a better understanding of the photophysical processes in the dendrimers. A modification of the synthetic concept for dendrimers enabled the synthesis of a series of donor-acceptor triads (T-Me, T-Cl and T-CN) consisting of two TAA donors and one NDI acceptor unit. The intermediate TAA chromophore ensured a downhill redox gradient from the NDI to the terminal TAA, which was proved by cyclic voltammetry measurements. The redox potential of the intermediate TAA was adjusted by different redox determining substituents in the "free" p-position of the TAA. Additionally, two dyads (Da and Db) were synthesised which differ in the junction of the triazole to the TAA or the NDI, respectively. In these cascades a nodal-plane along the N-N-axes in the NDI and a large twist angle between the NDI and the N-aryl substituent guaranteed a small electronic coupling. The photophysical investigations of the dendrimers focused on the homo-energy transfer properties in the TAA dendrimers G1-G3. Steady-state emission spectroscopy revealed that the emission takes place from a charge transfer state. The polar excited state resulted in a strong Stokes shift of the emission, which in turn led to a small spectral overlap integral between the absorption of the acceptor and the emission of the donor in the solvent relaxed state. According to the F{\"o}rster theory, the overlap integral strongly determines the energy transfer rate. Fluorescence up-conversion measurements showed a strong and rapid initial fluorescence anisotropy decay and a much slower decrease on the longer time scale. The experiment revealed a fast energy transfer in the first 2 ps followed by a much slower energy hopping. Time resolved emission spectra (TRES) of the model compound M indicated a solvent relaxation on the same time scale as the fast energy transfer. The F{\"o}rster estimation of energy transfer rates in G1 explains fast energy transfer in the vibrotionally relaxed state before solvent relaxation starts. Thereby, the emission spectrum of G1 in cyclohexane served as the time zero spectrum. Thus, solvent relaxation and fast energy transfer compete in the first two ps after excitation and it is crucial to discriminate between energy transfer in the Franck-Condon and in the solvent relaxed state. Furthermore, this finding demonstrates that fast energy transfer occurs even in charge transfer systems where a large Stokes shift prevents an effective spectral overlap integral if there is a sufficient overlap integral in before solvent relaxation. Energy transfer upon excitation was also observed in the spiro dendrimers spiro-G1 and spiro-G2 and identified by steady-state emission anisotropy measurements. It was assumed that the energy in spiro-G1 is completely distributed over the entire molecule while the energy in spiro-G2 is probably distributed over only one individual branch. This finding was based on a more polarised emission of spiro-G2 compared to spiro-G1. This issue has to be ascertained by e.g. time resolved emission anisotropy measurements in further energy transfer studies. Concerning the electron transfer properties of TAA-triazole systems the radical cations of G1-G2, spiro-G1 and spiro-G2 and of the model compound M were investigated by steady-state absorption spectroscopy. Experiments showed that the triazole bridge exhibits small electronic communication between the adjacent chromophores but still possesses sufficient electronic coupling to allow an effective electron transfer from one chromophore to the other. Due to the high density of chromophores, their D-A-D structure and their superficial centrosymmetry, the presented dendrimers are prospective candidates for two-photon absorption applications. The dyads, triads and the donor-acceptor dendrimer D-A-G1 were investigated regarding their photoinduced electron transfer properties and the effects that dominate charge separation and charge recombination in these systems. The steady-state absorption spectra of all cascades elucidated a superposition of the absorption characteristics of the individual subunits and spectra indicated that the chromophores do not interact in the electronic ground state. Time resolved transient absorption spectroscopy of the cascades was performed in the fs- and ns-time regime in MeCN and toluene as solvent. Measurements revealed that upon with 28200 cm-1 (355) nm and 26300 cm-1 (380 nm), respectively, an electron is transferred from the TAA towards the NDI unit yielding a CS state. In the triads at first a CS1 state is populated, in which the NDI is reduced and the intermediate TAA1 is oxidised. Subsequently, an additional electron transfer from the terminal TAA2 to TAA1 led to the fully CS2 state. Fully CS states of the dyads and triads exhibit lifetimes in the ns-time regime. In contrast for Db in MeCN, a lifetime of 43 ps was observed for the CS state together with the population of a 3NDI state. The signals of the other CS states decay biexponentially, which is a result of the presence of the 1CS and the 3CS states. While magnetic field dependent measurements of Db did not show an effect due to the large singlet-triplet splitting, T-CN exhibited a strong magnetic field dependence which is an evidence for the 1CS/3CS assignment. Further analysis of the singlet-triplet dynamics are required and are currently in progress. Charge recombination occurred in the Marcus inverted region for compounds solved in toluene and in the Marcus normal region for MeCN as solvent. However, a significant inverted region effect was observed only for Db. Triads are probably characterised by charge recombination rates in the inverted and in the normal region near to the vertex of the Marcus parabola. Hence the inverted region effect is not pronounced and the rate charge recombination rates are all in the same magnitude. However, compared to the charge recombination rate of Db the enlarged spatial distance between the terminal TAA and the NDI in the fully CS2 states in the triads resulted in reduced charge recombination rates by ca. one order of magnitude. More important than a small charge recombination rate is an overall lifetime of the CS states and this lifetime can significantly be enhanced by the population of the 3CS state. The reported results reveal that a larger singlet-triplet splitting in the dyads led to a CS state lifetime in the us time regime while a lifetime in the ns-time regime was observed in cases of the triads. Moreover, the singlet-triplet splitting was found to be solvent dependent in the triads, which is a promising starting point for further investigations concerning singlet-triplet splitting. The donor-acceptor dendrimer D-A-G1 showed similar characteristics to the dyads. The generation of a CS state is assumed due to a clear NDI radical anion band in the transient absorption spectrum. Noteworthy, the typical transient absorption band of the TAA radical cation is absent for D A-G1 in toluene. Bixon-Jortner analysis yielded a similar electronic coupling in D-A-G1 compared to the dyads. However, the charge recombination rate is smaller than of Db due to a more energetic CS state, which in the inverted region slows down charge recombination. In combination a singlet-triplet splitting similar to the dyads prolongs the CS state lifetime up to 14 us in diluted solution. Both effects result in an even better performance of D-A-G1 concerning energy conversion. D A-G1 is therefore a promising key structure for further studies on light harvesting applications. In a prospective study a second generation donor-acceptor dendrimer D-A-G2 might be an attractive structure accessible by "click reaction" of 13 and 8. D-A-G2 is expected to exhibit a downhill oriented gradient of CS states as assumed from the CV studies on G1-G3.},
  subject      = {Sternpolymere},
  language  = {en}
}
@unpublished{WohlgemuthMiyazakiTsukadaetal.2017,
  author    = {Wohlgemuth, Matthias and Miyazaki, Mitsuhiko and Tsukada, Kohei and Weiler, Martin and Dopfer, Otto and Fujii, Masaaki and Mitrić, Roland},
  title     = {Deciphering environment effects in peptide bond solvation dynamics by experiment and theory},
  series = {Physical Chemistry Chemical Physics},
  journal   = {Physical Chemistry Chemical Physics},
  doi       = {10.1039/C7CP03992A},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-159483},
  year      = {2017},
  abstract  = {Most proteins work in aqueous solution and the interaction with water strongly affects their structure and function. However, experimentally the motion of a specific single water molecule is difficult to trace by conventional methods, because they average over the heterogeneous solvation structure of bulk water surrounding the protein. Here, we provide a detailed atomistic picture of the water rearrangement dynamics around the -CONH- peptide linkage in the two model systems formanilide and acetanilide, which simply differ by the presence of a methyl group at the peptide linkage. The combination of picosecond pump-probe time-resolved infrared spectroscopy and molecular dynamics simulations demonstrates that the solvation dynamics at the molecular level is strongly influenced by this small structural difference. The effective timescales for solvent migration triggered by ionization are mainly controlled by the efficiency of the kinetic energy redistribution rather than the shape of the potential energy surface. This approach provides a fundamental understanding of protein hydration and may help to design functional molecules in solution with tailored properties.},
  language  = {en}
}
@phdthesis{Wittmann2014,
  author    = {Wittmann, Katharina},
  title     = {Adipose Tissue Engineering - Development of Volume-Stable 3-Dimensional Constructs and Approaches Towards Effective Vascularization},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-107196},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2014},
  abstract  = {Adipose tissue defects and related pathologies still represent major challenges in reconstructive surgery. Based on to the paradigm 'replace with alike', adipose tissue is considered the ideal substitute material for damaged soft tissue [1-3]. Yet the transfer of autologous fat, particularly larger volumes, is confined by deficient and unpredictable long term results, as well as considerable operative morbidity at the donor and recipient site [4-6], calling for innovative treatment options to improve patient care. With the aim to achieve complete regeneration of soft tissue defects, adipose tissue engineering holds great promise to provide functional, biologically active adipose tissue equivalents. Here, especially long-term maintenance of volume and shape, as well as sufficient vascularization of engineered adipose tissue represent critical and unresolved challenges [7-9]. For adipose tissue engineering approaches to be successful, it is thus essential to generate constructs that retain their initial volume in vivo, as well as to ensure their rapid vascularization to support cell survival and differentiation for full tissue regeneration [9,10]. Therefore, it was the ultimate goal of this thesis to develop volume-stable 3D adipose tissue constructs and to identify applicable strategies for sufficient vascularization of engineered constructs. The feasibility of the investigated approaches was verified by translation from in vitro to in vivo as a critical step for the advancement of potential regenerative therapies. For the development of volume-stable constructs, the combination of two biomaterials with complementary properties was successfully implemented. In contrast to previous approaches in the field using mainly non-degradable solid structures for mechanical protection of developing adipose tissue [11-13], the combination of a cell-instructive hydrogel component with a biodegradable porous support structure of adequate texture was shown advantageous for the generation of volume-stable adipose tissue. Specifically, stable fibrin hydrogels previously developed in our group [14] served as cell carrier and supported the adipogenic development of adipose-derived stem cells (ASCs) as reflected by lipid accumulation and leptin secretion. Stable fibrin gels were thereby shown to be equally supportive of adipogenesis compared to commercial TissuCol hydrogels in vitro. Using ASCs as a safe source of autologous cells [15,16] added substantial practicability to the approach. To enhance the mechanical strength of the engineered constructs, porous biodegradable poly(ε caprolactone)-based polyurethane (PU) scaffolds were introduced as support structures and shown to exhibit adequately sized pores to host adipocytes as well as interconnectivity to allow coherent tissue formation and vascularization. Low wettability and impaired cell attachment indicated that PU scaffolds alone were insufficient in retaining cells within the pores, yet cytocompatibility and differentiation of ASCs were adequately demonstrated, rendering the PU scaffolds suitable as support structures for the generation of stable fibrin/PU composite constructs (Chapter 3). Volume-stable adipose tissue constructs were generated by seeding the pre-established stable fibrin/PU composites with ASCs. Investigation of size and weight in vitro revealed that composite constructs featured enhanced stability relative to stable fibrin gels alone. Comparing stable fibrin gels and TissuCol as hydrogel components, it was found that TissuCol gels were less resilient to degradation and contraction. Composite constructs were fully characterized, showing good cell viability of ASCs and strong adipogenic development as indicated by functional analysis via histological Oil Red O staining of lipid vacuoles, qRT-PCR analysis of prominent adipogenic markers (PPARγ, C/EBPα, GLUT4, aP2) and quantification of leptin secretion. In a pilot study in vivo, investigating the suitability of the constructs for transplantation, stable fibrin/PU composites provided with a vascular pedicle gave rise to areas of well-vascularized adipose tissue, contrasted by insufficient capillary formation and adipogenesis in constructs implanted without pedicle. The biomaterial combination of stable fibrin gels and porous biodegradable PU scaffolds was thereby shown highly suitable for the generation of volume-stable adipose tissue constructs in vivo, and in addition, the effectiveness of immediate vascularization upon implantation to support adipose tissue formation was demonstrated (Chapter 4). Further pursuing the objective to investigate adequate vascularization strategies for engineered adipose tissue, hypoxic preconditioning was conducted as a possible approach for in vitro prevascularization. In 2D culture experiments, analysis on the cellular level illustrated that the adipogenic potential of ASCs was reduced under hypoxic conditions when applied in the differentiation phase, irrespective of the oxygen tension encountered by the cells during expansion. Hypoxic treatment of ASCs in 3D constructs prepared from stable fibrin gels similarly resulted in reduced adipogenesis, whereas endothelial CD31 expression as well as enhanced leptin and vascular endothelial growth factor (VEGF) secretion indicated that hypoxic treatment indeed resulted in a pro-angiogenic response of ASCs. Especially the observed profound regulation of leptin production by hypoxia and the dual role of leptin as adipokine and angiogenic modulator were considered an interesting connection advocating further study. Having confirmed the hypothesis that hypoxia may generate a pro-angiogenic milieu inside ASC-seeded constructs, faster vessel ingrowth and improved vascularization as well as an enhanced tolerance of hypoxia-treated ASCs towards ischemic conditions upon implanatation may be expected, but remain to be verified in rodent models in vivo (Chapter 5). Having previously been utilized for bone and cartilage engineering [17-19], as well as for revascularization and wound healing applications [20-22], stromal-vascular fraction (SVF) cells were investigated as a novel cell source for adipose tissue engineering. Providing cells with adipogenic differentiation as well as vascularization potential, the SVF was applied with the specific aim to promote adipogenesis and vascularization in engineered constructs in vivo. With only basic in vitro investigations by Lin et al. addressing the SVF for adipose repair to date [23], the present work thoroughly investigated SVF cells for adipose tissue construct generation in vitro, and in particular, pioneered the application of these cells for adipose tissue engineering in vivo. Initial in vitro experiments compared SVF- and ASC-seeded stable fibrin constructs in different medium compositions employing preadipocyte (PGM-2) and endothelial cell culture medium (EGM-2). It was found that a 1:1 mixture of PGM-2 and EGM-2, as previously established for co-culture models of adipogenesis [24], efficiently maintained cells with adipogenic and endothelial potential in SVF-seeded constructs in short and long-term culture setups. Observations on the cellular level were supported by analysis of mRNA expression of characteristic adipogenic and endothelial markers. In preparation of the evaluation of SVF-seeded constructs under in vivo conditions, a whole mount staining (WMS) method, facilitating the 3D visualization of adipocytes and blood vessels, was successfully established and optimized using native adipose tissue as template (Chapter 6). In a subcutaneous nude mouse model, SVF cells were, for the first time in vivo, elucidated for their potential to support the functional assembly of vascularized adipose tissue. Investigating the effect of adipogenic precultivation of SVF-seeded stable fibrin constructs in vitro prior to implantation on the in vivo outcome, hormonal induction was shown beneficial in terms of adipocyte development, whereas a strong vascularization potential was observed when no adipogenic inducers were added. Via histological analysis, it was proven that the developed structures were of human origin and derived from the implanted cells. Applying SVF cells without precultivation in vitro but comparing two different fibrin carriers, namely stable fibrin and TissuCol gels, revealed that TissuCol profoundly supported adipose formation by SVF cells in vivo. This was contrasted by only minor SVF cell development and a strong reduction of cell numbers in stable fibrin gels implanted without precultivation. Histomorphometric analysis of adipocytes and capillary structures was conducted to verify the qualitative results, concluding that particularly SVF cells in TissuCol were highly suited for adipose regeneration in vivo. Employing the established WMS technique, the close interaction of mature adipocytes and blood vessels in TissuCol constructs was impressively shown and via species-specific human vimentin staining, the expected strong involvement of implanted SVF cells in the formation of coherent adipose tissue was confirmed (Chapter 7). With the development of biodegradable volume-stable adipose tissue constructs, the application of ASCs and SVF cells as two promising cell sources for functional adipose regeneration, as well as the thorough evaluation of strategies for construct vascularization in vitro and in vivo, this thesis provides valuable solutions to current challenges in adipose tissue engineering. The presented findings further open up new perspectives for innovative treatments to cure soft tissue defects and serve as a basis for directed approaches towards the generation of clinically applicable soft tissue substitutes.},
  subject      = {Tissue Engineering},
  language  = {en}
}
@phdthesis{Waag2013,
  author    = {Waag, Thilo},
  title     = {Funktionalisierung von Nanodiamanten f{\"u}r Wirkstofftransport und Knochenersatzmaterialien},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-94597},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2013},
  abstract  = {Ziel der vorliegenden Arbeit ist das Design, die Synthese und das anschließende Testen von Nanodiamant-Wirkstoff-Konjugaten. Daf{\"u}r m{\"u}ssen zun{\"a}chst Nanodiamanten mit geeigneten Linkersystemen funktionalisiert werden, um anschließend verschiedene pharmazeutische Wirkstoffe auf der Diamantoberfl{\"a}che zu immobilisieren. Die Wirksamkeit der so angebundenen Inhibitoren auf die verschiedenen Erreger muss anschließend in vitro und in vivo getestet werden. Auch die Art der Aufnahme der Nanodiamanten in die verschiedenen Zellen muss untersucht werden. Dazu sollen Fluoreszenzfarbstoffe, wie z.B. Oregon Green 488, auf der Diamantoberfl{\"a}che immobilisiert werden.},
  subject      = {Diamant},
  language  = {de}
}
@phdthesis{Voelker2014,
  author    = {V{\"o}lker, Sebastian},
  title     = {Synthesis, Spectroscopic and Electrochemical Properties of Squaraine Polymers},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-101638},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2014},
  abstract  = {In this work the synthesis, the spectroscopic and electrochemical investigation as well as some applications of a broad diversity of indolenine squaraine dyes were presented. This diversity was based on two parent squaraine dyes, one standard trans-configured compound (M1) and one in which one central oxygen atom was replaced by a dicyanomethylene moiety (M2), which increased the acceptor strength and induced a cis-configuration. The variety of synthesised dyes included functionalised squaraine monomers, donor- and acceptor-substituted monomeric model squaraines, donor- and acceptor-squaraine copolymers, pure squaraine homopolymers, a squaraine-squaraine copolymer, as well as some conjugated cyclic oligomers. In order to be able to synthesise all these different kinds of dyes, several bromine and boronic ester derivatives were synthesised, which enabled the use of the Suzuki cross coupling reaction, to generate model dyes and copolymers. In addition, the bromine derivatives were used to carry out the Yamamoto homocoupling reaction to the respective homopolymers and macrocycles. The absorption maximum of unsubstituted reference dye M1 was found at ~ 15500 cm-1, while that of M2 was red-shifted to ~ 14300 cm-1 due to the increased acceptor strength of the central unit. The extinction coefficients were in the order of ~ 300000 M-1 cm-1 and ~ 200000 M-1 cm-1, respectively. It was found that the implementation of functional groups (M3-M9), additional electron donors (M10-M19) or acceptors (M20-M22) at the periphery lead to bathochromic shifts of the absorption depending on the strength of either - and/or -donating properties of the substituents. For the bis- and triarylamine substituted dyes M10-M13 and the dibrominated dyes M5 and M7 the electronic structure of the mono- and diradical (di)cations was explored using the interplay of cyclic voltammetry, spectroelectrochemistry, and DFT calculations. It was demonstrated that the monoradical cations still show a cyanine-like character and are delocalised Robin-Day class III species due to the low redox potential of the squaraine bridge between the additional amine redox centres. To the best of my knowledge, this made M13+∙, with an N-N-distance of 26 bonds between the additional redox centres to the longest bis(triarylamine) radical cation that is completely delocalised. For the diradical dications, the situation was of larger complexity. The computed most stable energetic state of the dianisylamine-substituted dyes turned out to be a broken-symmetry state with almost equal contributions of an open-shell singlet and triplet state. In addition, it was shown that the HOMO-1→HOMO transition dominated the absorption spectra of the diradical dications where the trans-/cis-configuration of the squaraines had a direct impact due to symmetry reasons. Based on the donor-squaraine model compounds M10-M19, a series of donor-squaraine copolymers was synthesised (P7-P12) in order to further red shift and broaden the low energy absorption band. However, these effects were only of marginal extent. Both the optical and the electrochemical derived band gaps were barely lowered compared to the respective monomeric model dyes. This was assigned to an increased squaraine-squaraine distance and resulting lower exciton coupling between the squaraine chromophores due to the bridging units. In addition, according to semiempirical calculations the bridges were twisted out of the squaraine plane what reduced conjugational effects between the chromophores. To sum up, the idea to insert additional electron rich bridging units in order to create copolymers with broad and red-shifted absorption did not fully work out for the presented systems. The addition of strong electron accepting NDI units at the periphery resulted in M21, the most unique monomeric model squaraine in this work. The common picture of a sharp low energy squaraine absorption completely altered due to the addition of the NDIs and a rather broad and solvent dependent low energy absorption was found. Spectroelectrochemical experiments and semiempirical calculations showed that this band is a superposition of the common squaraine HOMO→LUMO transition and a partial squaraine→NDI charge transfer transition. The latter was lost upon oxidation of the squaraine and the absorption spectrum of the monocation of M21 was found to be nearly a 1:1 image of a pure squaraine monocation. Both the monomeric model M21 and the respective copolymer P13 showed low electrochemically obtained band gaps of 1.05-1.20 eV, which were the lowest of all squaraines in this work. For both dyes, transient absorption measurements in the fs-time regime revealed the ultrafast formation of a CS state via an intermediate CT state within a few ps. Besides, charge recombination to the ground state also occured within a few ps. In the polymer, there was barely any further energy or charge transfer within the excited state lifetime and therefore the CS state was confined on adjacent squaraine-NDI pairs and did not further travel along the polymer strand. The Ni-mediated Yamamoto homocoupling reaction was applied for the synthesis of the homopolymers (P1-P5). In contrast to the donor-squaraine copolymers, those polymers revealed strongly red-shifted and broad absorption in the red to NIR region in addition to a sharp fluorescence. These features could be explained to originate mainly from the exciton coupling of localised excited states and the presence of different superstructures in solution. For the polymers P1 and P2, an elongated J-type polymer chain caused the strong lowest energy absorption band whereas a zig-zag type arrangement of the single chromophores lead to transitions into both low and high energy excited states of the excitonic manifold. For the polymers P3 and P4, several polymer fractions of different size were investigated. Here, also an elongated chain with J-type character induced the lowest energy absorption band whereas a helical H-type arrangement caused transitions to higher energies of the excitonic manifold. The fractions to which these structures were formed depended on the chain length and the solvent. In thin film measurements, it was shown that the initially in solution formed superstructures were partly retained in the thin film but could be altered by annealing procedures. A control of the superstructures should enable the controlled tuning of the optical properties. Despite the strong interaction of the chromophores in the excited state, the redox potentials of the homopolymers barely differed to those of the respective reference dyes, indicating negligible electronic interaction in the ground state. In addition squaraine-squaraine copolymer P6, consisting of alternating parent dyes M1 and M2, was synthesised. Likewise to the homopolymers, a broad and red-shifted absorption was observed. This was explained by exciton coupling theory, which was extended to also suit alternating copolymers. In toluene, an extraordinary narrow and intense lowest energy absorption band was observed. This exchange narrowing might be a result of a highly ordered J-type structure of the polymer especially in this solvent because it was not found in others. The features of the polymer may be compared to typical J-aggregates formed from monomeric cyanine molecules for example and the polymer used as model for excitonic interactions in an alternating copolymer. Transient absorption measurements revealed a strong energy dependence of the decay traces of the copolymer, most strikingly at early decay times. This was assigned to the occurrence of multiple excitations of one polymer strand (due to the large extinction coefficients of the polymer) and resulting exciton-exciton annihilation. Due to the large exciton diffusion constants that were estimated, the static exciton-exciton annihilation was the rate limiting process of the decay, in contrast to other conjugated polymers, where in thin film measurements the decay was diffusion controlled. To sum up, for the polymers consisting of exclusively squaraine chromophores, it was shown that the exciton coupling of single chromophores with strong transition dipole moments was a fruitful way to tune the absorption spectra. As a side product of some of the polycondensation reactions, unprecedented cyclic conjugated oligomers such as the triarylamine-bridged dimer Dim1, the cyclic homotrimers Tri1-Tri3, and the tetramer Tet1 were obtained by recycling GPC in low yields. Especially the cyclic trimers showed unusual absorption and even more extraordinary fluorescence properties. They showed multiple fluorescence bands in the NIR that covered a range from ~ 8000-12500 cm-1 (800-1250 nm). First hints from theoretical calculations indicated that the trimer was not fully planar but comprised a mixture of both planar and bent single squaraine chromophores. However, final results of the calculations were still missing at the time of writing. In the last part of this work, the application of some monomeric and polymeric squaraines in binary and ternary bulk heterojunction solar cells was demonstrated. Also the utilisation as a dopant in a polymer matrix in an OLED device was shown. The homopolymers P1-P4 were tested in the binary BHJ solar cells revealing poor performances and especially very low short circuit currents. The utilisation of the polymers P3 and P4 that carried the dicyanomethylene group resulted in higher open circuit voltages due to the lower LUMO energy levels but still an overall poor performance. Neither for the different alkyl chains nor for the size of the polymers was a trend observed. In the ternary BHJ solar cells, small amounts of either monomer M14 or polymers P1A, P4-1 or P13 were added to a P3HT/PCBM system in order to generate an additional pathway for charge or energy transfer that should result in a better device performance. However, for none of the tested squaraines, improved solar cells could be built. In similarity to the binary solar cells, the short circuit currents were lower compared to a P3HT/PCBM reference device. These low short circuit currents indicated that the morphology of the squaraine dyes was the major limitation in those devices. It is possible that the dimethyl groups at the indolenine hindered a favoured alignment of the compounds that would allow decent charge transport. In the squaraine doped OLED the squaraine M6 worked rather well as an NIR emitter. Already at low dye loads the fluorescence of the host polymer SY-PPV was completely quenchend and emission from the squaraine was observed. For electroluminescence measurements, a lower dye load (0.5 wt.\%) compared to the photoluminescence measurements was sufficient, indicating that apart from FRET additional quenching mechanisms were at work in the electrically driven devices such as charge carrier dynamics.},
  subject      = {Squaraine},
  language  = {en}
}
@phdthesis{Voelker2013,
  author    = {V{\"o}lker, Michael},
  title     = {Entwicklung, Charakterisierung und Anwendung neuer In-vitro-Methoden zur Untersuchung des Fremdstoffmetabolismus und der Inhibition fremdstoffmetabolisierender Enzyme},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-99434},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2013},
  abstract  = {Arzneistoffe werden nach ihrer Applikation durch verschiedene fremdstoff-metabolisierende Enzyme des Organismus biochemisch ver{\"a}ndert. Durch eine Hemmung dieser Enzyme, z. B. durch Grapefruitsaft oder einen gleichzeitig eingenommenen Arzneistoff, kann es insbesondere bei Arzneistoffen mit geringer therapeutischer Breite, wie z. B. Theophyllin oder Phenprocoumon, zu gef{\"a}hrlichen Nebenwirkungen kommen. Besonders gef{\"a}hrdet sind multimorbide Patienten, die eine Therapie mit einer Vielzahl von Arzneimitteln erhalten. Um den Metabolismus von neuen Wirkstoffen und deren Interaktionspotential zu untersuchen, werden u. a. In-vitro-Experimente mit Zellfraktionen oder einzelnen Enzymen durchgef{\"u}hrt. Bei Inhibitionsassays wird der Einfluss von Arzneistoffen auf die Umsetzung eines Testsubstrates untersucht. Ein Großteil dieser Arbeit besch{\"a}ftigt sich daher mit der Entwicklung von Methoden, mit denen die Inhibition wichtiger fremd-stoffmetabolisierender Enzyme, wie Cytochrom-P450-Enzyme (CYP-Enzyme), Glutathion-S-Transferasen (GSTs) und Carboxylesterasen (CES), untersucht werden kann. Dabei wurde auch eine Charakterisierung der Testsubstrate vorgenommen. Dar{\"u}ber hinaus wurden die Bioaktivierung von Clopidogrel und die Bildung von reaktiven Metaboliten untersucht. Aufgrund aktueller Diskussionen {\"u}ber die Interaktion zwischen Clopidogrel und Omeprazol wurde in dieser Arbeit die Bioaktivierung von Clopidogrel mit Hilfe von LC/MS/MS-Analysen und rekombinanten CYP-Enzymen sowie humanen Lebermikrosomen untersucht. Aufgrund der Instabilit{\"a}t des aktiven Metaboliten wurde in den inkubierten Proben eine Derivatisierung mit Dimedon durchgef{\"u}hrt. Die Untersuchungen zeigten, dass die Umwandlung zum 2-Oxo-Clopidogrel durch mehrere CYP-Enzyme erfolgt. Neben CYP2C19 sind CYP1A2, CYP2B6, CYP2C9 und CYP3A4 beteiligt. Anhand von selektiven Inhibitoren konnte CYP3A4 f{\"u}r die Bildung des aktiven Metaboliten aus 2-Oxo-Clopidogrel identifiziert werden. Neben der Biotransformation durch CYP-Enzyme wird haupts{\"a}chlich der Carbons{\"a}ureester des Clopidogrels hydrolysiert. Untersuchungen mit humanen Subzellfraktionen und rekombinanten Carboxylesterasen zeigen, dass die Esterhydrolyse durch CES1 katalysiert wird. Des Weiteren wurde der Metabolismus von Omeprazol untersucht. Es stellte sich heraus, dass die 5-Hydroxylierung und die 5-O-Demethylierung haupts{\"a}chlich durch CYP2C19 und CYP2D6 erfolgen. Dabei besitzt Omeprazol die h{\"o}chste Affinit{\"a}t zu CYP2C19. Die Bildung von Omeprazolsulfon wird hingegen nur durch CYP3A4 katalysiert. Mit Hilfe etablierter CYP-Inhibitionsassays wurde der Einfluss von Clopidogrel und Omeprazol auf neun verschiedene CYP-Enzyme untersucht. Durch Clopidogrel wurden CYP2B6 (IC50 = 6 nM), CYP2C19 (IC50 = 0.4 µM) und CYP1A2 (IC50 = 2.8 µM) gehemmt. Omeprazol inhibiert v. a. CYP2C19 (IC50 = 2 µM) und CYP3A4 (IC50 = 17 µM). Im Folgenden wurde auch der Einfluss von Omeprazol auf die Bildung von 2-Oxo-Clopidogrel untersucht. Die Bioaktivierung wurde allerdings erst bei einer Omeprazol-Konzentration von mehr als 10 µM beeinflusst. Am st{\"a}rksten wurde dabei CYP2C19 (IC50 ca. 100 µM) gehemmt. Aufgrund der recht schwachen Inhibition von CYP2C19 durch Omeprazol und der Tatsache, dass mehrere CYP-Enzyme die Bildung von 2-Oxo-Clopidogrel katalysieren, l{\"a}sst sich der Wirkungsverlust von Clopidogrel bei einer gleichzeitigen Einnahme von Omeprazol anhand der Ergebnisse der In-vitro-Versuche nicht durch eine Hemmung von CYP2C19 erkl{\"a}ren. Eine bisher nur wenig bei In-vitro-Interaktionsstudien untersuchte Klasse fremdstoffmetabolisierender Enzyme sind die Carboxylesterasen (CES), die v. a. bei der Bioaktivierung von Esterprodrugs eine wichtige Rolle spielen. F{\"u}r die Entwicklung von Inhibitionsassays wurden zun{\"a}chst verschiedene Modellsubstrate ausgew{\"a}hlt. Nach Inkubation dieser Substrate mit humanen Subzellfraktionen und rekombinanten Carboxylesterase-Enzymen wurden die Metaboliten mit Hilfe einer HPLC/UV-Analyse quantifiziert. Es zeigte sich, dass Methyl-4-nitrobenzoat und Mycophenolatmofetil selektiv durch CES1 hydrolysiert werden. Die Hydrolyse von Phenylacetat, p-Nitrophenylacetat und 4-Methylumbelliferylacetat wurde durch alle verwendeten Enzyme katalysiert. Dar{\"u}ber hinaus konnte eine Hydrolyse der aus Boswellia-Arten (Weihrauch) stammenden 3-O-Acetyl-11-keto--boswellias{\"a}ure durch CES2 beobachtet werden. Aufgrund der bei den meisten Modellsubstraten auftretenden Instabilit{\"a}t im Inkubationspuffer war eine Korrektur mit Hilfe von Blindproben erforderlich. Die Hydrolyse konnte durch Erniedrigung des pH-Wertes des Inkubationspuffers von 7.4 auf 6.5 und durch die Zugabe von Essigs{\"a}ure zur Stoppl{\"o}sung verlangsamt werden. Anschließend wurde die Beeinflussung der Hydrolyse von p-Nitrophenylacetat durch Pflanzenextrakte untersucht. Es zeigte sich, dass zahlreiche Extrakte die Esterasen aus der humanen Leber hemmten und die Aktivit{\"a}t bei einer Extraktkonzentration von 25-50 µg/ml weit unterhalb von 50 \% lag. Die Inhibition von CES durch Pflanzenextrakte stellt daher ein bisher unbekanntes Risiko f{\"u}r Arzneimittelinteraktionen dar. Cytochrom-P450-Enzyme (CYP-Enzyme) sind die wichtigste Gruppe fremdstoff-metabolisierender Enzyme. Zur Untersuchung der Beeinflussung dieser Enzyme durch neue Wirkstoffe werden daher standardm{\"a}ßig In-vitro-Interaktionsstudien durchgef{\"u}hrt. Von der Food and Drug Administration (FDA) wurden daher f{\"u}r jedes CYP-Enzym verschiedene Arzneistoffe als Testsubstrate vorgeschlagen. Zus{\"a}tzlich kommen bei solchen Untersuchungen Modellsubstrate zum Einsatz, deren Metaboliten fluoreszieren und die somit f{\"u}r ein Hochdurchsatz-Screening mit Hilfe von Mikrotiterplatten verwendet werden k{\"o}nnen. In dieser Arbeit wurde eine Reihe von Modellsubstanzen (Cumarin- und Harman-Derivate) auf ihre Eignung als Substrate f{\"u}r CYP-Inhibitionsassays untersucht. Nach der Entwicklung von Methoden zur Detektion der Metaboliten, die durch LC/MS/MS-Analysen oder durch HPLC/Fluoreszenzanalysen erfolgte, wurden die CYP-Enzyme identifiziert, die an der Umsetzung der Substrate beteiligt sind und mit Hilfe von CYP-Enzymen und humanen Lebermikrosomen wurden die Km-Werte der Substrate bestimmt. Die Untersuchungen zur Stabilit{\"a}t der CYP-Enzyme {\"u}ber 60 min zeigten, dass diese bei 37 °C stark an Aktivit{\"a}t verlieren, insbesondere CYP1A2. F{\"u}r eine maximale Umsetzungsgeschwindigkeit war eine NADPH-Konzentration von 1 mM ausreichend. Die Untersuchung von 14 Standardsubstraten ergab, dass die Mehrheit selektiv durch das entsprechende CYP-Enzym umgesetzt wird. Die Amodiaquin-N-deethylierung, die Tolbutamidhydroxylierung, die Chlorzoxazon-6-hydroxylierung und die 4-Nitrophenol-2-hydroxylierung wurden durch mehrere CYP-Enzyme katalysiert. Als Positivkontrollen f{\"u}r die Inhibitionsassays und zur Identifizierung der am Metabolismus beteiligten CYP-Enzyme werden von der FDA verschiedene Inhibitoren vorgeschlagen. Da nicht zu allen Inhibitoren Daten {\"u}ber deren Isoenzymselektivit{\"a}t vorliegen, wurde mit Hilfe der Assays die inhibitorische Aktivit{\"a}t von zw{\"o}lf Inhibitoren auf neun verschiedene CYP-Enzyme untersucht. Alle Inhibitoren hemmten das jeweilige angegebene CYP-Enzym. Bei Furafyllin (CYP1A2), Tranylcypromin (CYP2A6), Clopidogrel (CYP2B6), Montelukast (CYP2C8), Sulfaphenazol (CYP2C9), Chinidin (CYP2D6) und Ketoconazol (CYP3A4) konnte eine Konzentration ermittelt werden, bei der nur ein CYP-Enzym gehemmt wird. F{\"u}r Quercetin, Nootkaton, Diethyldithiocarbamat, Sertralin und Ticlopidin wurde eine Inhibition mehrerer CYP-Enzyme festgestellt. Mit Hilfe der CYP-Inhibitionsassays wurden Extrakte lebertoxischer Arzneipflanzen, wie z. B. Tussilago farfara (Huflattich) oder Chelidonium majus (Sch{\"o}llkraut), untersucht. Alle Extrakte hemmten konzentrationsabh{\"a}ngig die CYP-Enzyme, am st{\"a}rksten die Enzyme der Subfamilie CYP2C. Als In-vitro-Substrate f{\"u}r CYP-Inhibitionsassays werden aufgrund ihrer starken Fluoreszenz h{\"a}ufig Cumarin-Derivate eingesetzt. In dieser Arbeit wurden daher 18 O-alkylierte bzw. O-benzylierte Derivate von 7-Hydroxycumarin, 7-Hydroxy-4-methylcumarin und 7-Hydroxy-4-trifluormethylcumarin synthetisiert und die Umsetzung durch verschiedene CYP-Enzyme mit Hilfe der zuvor optimierten LC/LC/Fluoreszenz-basierten Assays untersucht. An der O-Desalkylierung der Cumarin-Derivate waren haupts{\"a}chlich CYP1A2, CYP2B6 und im geringeren Ausmaß CYP2C19, CYP2D6 und CYP2E1 beteiligt. Die h{\"o}chste Affinit{\"a}t besaßen die Substrate zu CYP1A2. Debenzylierungen wurden neben CYP1A2 haupts{\"a}chlich durch CYP3A4 katalysiert. Die h{\"o}chsten Umsetzungsgeschwindigkeiten wurden f{\"u}r die Debenzylierung von 7-Benzyloxy-4-methylcumarin (BMC, 14 pmol/pmol P450/min) und 7-Benzyloxy-4-trifluormethylcumarin (BFC, 9 pmol/pmol P450/min) beobachtet. F{\"u}r 7-Methoxy-4-trifluormethylcumarin (MFC) war die Umsetzungs¬geschwindigkeit f{\"u}r die O-Demethylierung mit CYP1A2 und CYP2B6 im Vergleich zu CYP2C9 deutlich h{\"o}her. MFC und 7-Ethoxy-4-trifluormethylcumarin (EFC) eignen sich daher v. a. f{\"u}r Inhibitionsuntersuchungen von CYP2B6. Bei den untersuchten 7 Alkyloxycumarinen handelt es sich in allen F{\"a}llen nicht um selektive CYP-Substrate. Sie k{\"o}nnen demnach nicht f{\"u}r Inhibitionsuntersuchungen mit humanen Lebermikrosomen verwendet werden. Ein Einsatz f{\"u}r Simultanbestimmungen der Hemmung mehrerer CYP-Enzyme in einem Versuch (Cocktail-Assay) ist aus diesem Grund ebenfalls nicht m{\"o}glich. Durch LC/MS-Analysen nach Inkubation der Cumarin-Derivate mit humanen Lebermikrosomen zeigte sich, dass neben den entsprechenden O Desalkylmetaboliten mehrere Hydroxymetaboliten entstehen und der O Desalkylmetabolit insbesondere bei Derivaten mit l{\"a}ngeren Alkylsubstituenten nicht der Hauptmetabolit ist. Ein Ziel der Arbeitsgruppe ist es zudem, neue In-vitro-Substrate zur Untersuchung der Inhibition von CYP-Enzymen mit besseren enzymkinetischen und analytischen Eigenschaften zu entwickeln. Grundstruktur hierf{\"u}r ist das -Carbolin, da -Carbolin-Derivate eine starke Fluoreszenz aufweisen. Von dem Naturstoff Harmin ist bekannt, dass dieser durch CYP1A2, CYP2C9, CYP2C19 und CYP2D6 O-demethyliert wird. Durch Modifizierung der Harman-Struktur sollte die CYP-Isoenzymselektivit{\"a}t f{\"u}r die O-Dealkylierung gesteigert werden und Substrate f{\"u}r weitere CYP-Enzyme erhalten werden. Hierf{\"u}r wurden in der Arbeitsgruppe u. a. 2-Benzyl-7-benzyloxyharman (BBH), 2-Benzyl-7-methoxyharman (BMH), 7-Methoxy-9-(4-carboxybenzyl)harman (MCBH) und 2-Methyl-7-methoxyharman (MMH) hergestellt. In dieser Arbeit wurden LC/LC/Fluoreszenz- und LC/MS/MS-Methoden zur Quantifizierung der aus diesen Derivaten entstehenden O-Desalkylmetaboliten entwickelt und die Substrate charakterisiert. Die Einf{\"u}hrung von Benzylsubstituenten an der phenolischen Hydroxylgruppe von Harmol (BBH) f{\"u}hrte zum Metabolismus durch CYP3A4 und die Substitution mit einem Carboxybenzylrest am Indolstickstoff (MCBH) verst{\"a}rkte die Selektivit{\"a}t zu den Enzymen der Subfamilie 2C. Durch die Methylierung des Pyridin-Stickstoffs des Harmins (MMH) wurde ein selektives Substrat f{\"u}r CYP2D6 erhalten, weshalb bei dieser Substanz auch humane Lebermikrosomen verwendet werden k{\"o}nnen. Durch die im Vergleich zu anderen CYP2D6-Substraten erhaltene hohe Umsetzungsgeschwindigkeit l{\"a}sst sich die Proteinkonzentration minimieren. F{\"u}r die {\"u}berwiegend an der O-Dealkylierung der Substrate beteiligten CYP-Enzyme wurden die Km-Werte ermittelt. Bei der Untersuchung von verschiedenen CYP-Inhibitoren zeigte sich, dass mit diesen Substraten vergleichbare IC50-Werte, wie mit den Standardsubstraten, erhalten werden. Die Harman-Derivate k{\"o}nnen daher zur Untersuchung der Inhibition wichtiger CYP-Enzyme eingesetzt werden und bieten eine Alternative zu den bisher vorhandenen Fluoreszenz-Substraten. Durch die Einstellung des pH-Wertes im Anschluss an die Inkubation lassen sich die Metaboliten ebenfalls fluorimetrisch in der Mikrotiterplatte detektieren und k{\"o}nnen f{\"u}r ein Hochdurchsatz-Screening eingesetzt werden. Allerdings m{\"u}ssen die Fluoreszenzeigenschaften weiter verbessert werden, um eine kontinuierliche Bestimmung w{\"a}hrend der Inkubation zu erm{\"o}glichen. In der pharmazeutischen Industrie besteht ein großes Interesse an der Detektion von reaktiven Metaboliten, um eine potentielle Lebertoxizit{\"a}t von neuen Wirkstoffen vorhersagen zu k{\"o}nnen. Hierf{\"u}r werden die Testsubstanzen mit humanen Lebermikrosomen inkubiert und die reaktiven Metaboliten mit Glutathion abgefangen. Zur Optimierung der LC/MS/MS-Analysen wurde in dieser Arbeit die Fragmentierung solcher Addukte anhand von Standardsubstanzen untersucht. Bei allen untersuchten Glutathion-Addukten trat eine Abspaltung der Pyroglutamins{\"a}ure bei positiver Polarit{\"a}t mit einer vergleichbaren Signalintensit{\"a}t auf, weshalb eine Detektion dieses Fragmentes durch einen Neutral-Loss-Scan am besten geeignet erschien. Mit Hilfe der Screening-Methode wurden zuerst Arzneistoffe untersucht, von denen reaktive Metaboliten bekannt sind. F{\"u}r die Bioaktivierung von Clozapin konnten CYP1A2, CYP2D6 und CYP3A4 identifiziert werden, w{\"a}hrend die Toxifizierung von Paracetamol haupts{\"a}chlich durch CYP1A2 und CYP3A4 erfolgte. Auff{\"a}llig war, dass mit steigender Paracetamolkonzentration keine S{\"a}ttigung der Umsetzung auftrat. Durchgef{\"u}hrte Molek{\"u}lver{\"a}nderungen am Glutathion, wie die Einf{\"u}hrung eines Dansylrestes oder eines Biotins, f{\"u}hrten zu keiner deutlichen Verbesserung der Detektion der reaktiven Metaboliten. Dar{\"u}ber hinaus zeigte sich, dass bei den markierten GSH-Derivaten die Umsetzung durch GSTs erheblich reduziert ist. Mit der Screening-Methode wurden allerdings viele falsch positive Signale erhalten, so dass diese nicht f{\"u}r eine Untersuchung von Extrakten lebertoxischer Pflanzen eingesetzt werden konnte. F{\"u}r eine eindeutige und schnelle Identifizierung der Signale als Glutathion-Addukte ist daher die hochaufl{\"o}sende Massenspektrometrie erforderlich. Eine weitere Klasse fremdstoffmetabolisierender Enzyme sind die Glutathion-S-Transferasen (GSTs), {\"u}ber deren Inhibition durch Arzneistoffe und Pflanzenextrakte in der Literatur nur wenige Daten vorliegen. Zur Entwicklung von Inhibitionsassays wurden die in der Literatur beschriebenen Substrate 1-Chlor-2,4-dinitrobenzol, 4 Nitrochinolin-N-oxid, 1,2-Dichlor-4-nitrobenzol und 4-Nitrobenzylchlorid verwendet. Die Detektion der Metaboliten erfolgte im Gegensatz zu der h{\"a}ufig eingesetzten Photometrie mit Hilfe der HPLC/UV- bzw. einer LC/MS/MS-Analyse. F{\"u}r die Kalibrierung wurden zun{\"a}chst die entsprechenden Glutathionkonjugate aus den Substraten synthetisiert. Bei den durchgef{\"u}hrten diskontinuierlichen Assays stellte die h{\"a}ufig auftretende nichtenzymatische Reaktion der Substrate mit Glutathion ein Problem dar. Durch die Erniedrigung des pH-Wertes des Inkubationspuffers von 7.4 auf 6.5 und der Senkung der Inkubationstemperatur von 37 °C auf 25 °C konnte die nichtenzymatische Reaktion w{\"a}hrend der Inkubation erheblich verlangsamt werden. Die nichtenzymatische Reaktion nach der Inkubation konnte durch Zugabe von Oxidationsmitteln gestoppt werden. Von den getesteten humanen Lebersubzell¬fraktionen besaß die cytosolische Fraktion bei allen Substraten die h{\"o}chste Aktivit{\"a}t. Im Rahmen der Assayentwicklung wurde die Glutathion-, die Proteinkonzentration und die Inkubationszeit optimiert. Es wurden die Km- und Vmax-Werte f{\"u}r die Umsetzung der Substrate ermittelt. Als Positivkontrolle diente das ebenfalls synthetisierte Glutathionkonjugat der Etacryns{\"a}ure, f{\"u}r das die IC50-Werte mit jedem Substrat bestimmt wurden. Dabei konnte ein Einfluss des pH-Wertes des Inkubationspuffers und der Inkubationstemperatur auf die gemessene inhibitorische Aktivit{\"a}t beobachtet werden. Anschließend wurde ein Screening von Arzneistoffen, ausgew{\"a}hlten Naturstoffen und etwa 50 Pflanzenextrakten auf eine Inhibition der GSTs in humanem Lebercytosol mit 1-Chlor-2,4-dinitrobenzol, das am schnellsten von allen Substraten umgesetzt wurde, durchgef{\"u}hrt. Von den getesteten Naturstoffen fiel eine ausgepr{\"a}gte Hemmung durch Biflavonoide auf. Nahezu alle untersuchten Pflanzenextrakte hemmten die GSTs. Eine starke Inhibition der GSTs zeigten Extrakte aus Cinnamomum cassia (Zimt), die sich als nicht-kompetitiv herausstellte. Weiterhin wurde eine starke Hemmung der Extrakte gerbstoffhaltiger Pflanzen, wie z. B. Hamamelis virginiana (virginische Zaubernuss) oder Krameria triandra (Ratanhia), beobachtet. Hier resultierten IC50-Werte zwischen 5 und 30 µg/ml. Ein Vergleich verschiedener Methoden zur Detektion des Metaboliten 2,4 Dinitrophenyl-S-glutathion zeigte, dass die Photometrie f{\"u}r die Untersuchung der Inhibition von Pflanzenextrakten aufgrund der St{\"o}rung durch die Pflanzenmatrix ungeeignet ist. Mit Hilfe der verwendeten HPLC/UV- sowie der LC/MS/MS-Analyse konnte der Metabolit selektiv erfasst werden und reproduzierbare Ergebnisse f{\"u}r die Inhibition der GSTs durch Pflanzenextrakte erzielt werden. Neben den GSTs wurde auch die Beeinflussung der Glutathionreduktase (GR) in dieser Arbeit untersucht. Hierf{\"u}r wurde ein HPLC-basierter Assay entwickelt, bei dem das reduzierte Glutathion mit 5,5´-Dithiobis(2-nitrobenzoes{\"a}ure) derivatisiert und das entstandene gemischte Disulfid aus Glutathion und 5-Thio-2-nitrobenzoes{\"a}ure quantifiziert wurde. Zur Untersuchung der Inhibition durch Pflanzenextrakte wurde humanes Lebercytosol verwendet, das von allen humanen Lebersubzellfraktionen die h{\"o}chste Aktivit{\"a}t besaß. Im Vergleich zu den GSTs wurde die GR durch die {\"u}berwiegende Zahl der ausgew{\"a}hlten Pflanzenextrakte kaum gehemmt. Eine nennenswerte Inhibition der GR konnte nur bei Extrakten von Juglans regia (Walnuss) beobachtet werden. Fazit In dieser Arbeit wurden eine Reihe von In-vitro-Methoden zur Untersuchung der Inhibition von CYP-Enzymen und weiteren fremdstoffmetabolisierenden Enzymen, wie CES oder GSTs, entwickelt. Aufgrund der dabei angewendeten selektiven HPLC-basierten Quantifizierung der Metaboliten durch UV-, Fluoreszenz- oder MS-Detektion k{\"o}nnen mit diesen Methoden auch Proben mit komplexer Matrix untersucht werden. F{\"u}r alle Assays wurden die Inkubationsbedingungen optimiert und die enzymkinetischen Parameter vieler Substrate ermittelt. Dar{\"u}ber hinaus wurden wichtige Erkenntnisse {\"u}ber die Isoenzymselektivit{\"a}t dieser Substrate gewonnen. Die Eignung der Assays wurde anhand von Standardinhibitoren bewiesen. Schließlich wurde die inhibitorische Aktivit{\"a}t von zahlreichen Pflanzenextrakten bestimmt, deren Auswirkung auf fremdstoffmetabolisierende Enzyme bisher unbekannt war. Die in dieser Arbeit beschriebenen Methoden k{\"o}nnen f{\"u}r die Untersuchung des Metabolismus von Arzneistoffen und der Inhibition fremdstoffmetabolisierender Enzyme, die f{\"u}r eine Zulassung neuer Wirkstoffe erforderlich ist, routinem{\"a}ßig eingesetzt werden.},
  subject      = {Xenobiotikum},
  language  = {de}
}
@phdthesis{Uthe2018,
  author    = {Uthe, Friedrich Wilhelm},
  title     = {Identifikation synthetisch-letaler Interaktionen mit dem Tumorsuppressor APC und Beeinflussung von MYC-Proteinmengen durch Translationsinhibition im kolorektalen Karzinom},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-166451},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2018},
  abstract  = {Der Tumorsupressor APC ist in der Mehrzahl aller F{\"a}lle kolorektaler Karzinome bereits in der initialen Phase der Karzinogenese mutiert. Diese Mutationen f{\"u}hren zu einer aberranten Aktivierung des Wnt-Signalweges sowie zu weiteren die Karzinogenese vorrantreibenden Aktivit{\"a}ten, beispielsweise einem ver{\"a}nderten Migrationsverhalten. Dieser Dissertation zu Grunde liegt die Idee, dass durch die Trunkierung des APC-Proteins aber auch Abh{\"a}ngigkeiten von Genaktivit{\"a}ten entstehen, die zuvor entbehrlich waren. Solche synthetisch letalen Gene sollten in einem high-content shRNA-Screen gefunden werden. F{\"u}r die Durchf{\"u}hrung des Screens wurde ein von der SW480 Kolonkarzinomzelllinie abgeleitetes, isogenes Zellsystem generiert, welches durch Induktion mit Doxyzyklin das vollst{\"a}ndige APC-Allel (FL-APC) exprimiert. Infolge dieser Expression zeigen die Zellen einen weniger malignen Ph{\"a}notyp. Dies spiegelt sich darin wider, dass die Zellen durch FL-APC Expression in ihrer Wnt-Signalwegsaktivit{\"a}t eingeschr{\"a}nkt werden. Doxyzyklininduzierte Zellen sind schlechter in der Lage ohne Adh{\"a}sion zu proliferieren als nicht induzierte Zellen. Andererseits ist ihre F{\"a}higkeit einem FKS-gradienten entlang zu migrieren verbessert. Der shRNA-Screen wurde mit der Decipher shRNA-Bibliothek durchgef{\"u}hrt. Diese enth{\"a}lt 27.500 verschiedene shRNAs mit Interferenzaktivit{\"a}t gegen 5.000 mRNAs, die potentiell pharmakologisch inhibierbare Proteine kodieren. Die besten zwei Kandidaten f{\"u}r eine synthetisch letale Interaktion mit trunkiertem APC, BCL2L1 und EIF2B5 wurden im Verlauf einer Masterarbeit bzw. direkt in dieser Disseration validiert. EIF2B5 zeigte in vitro nach Depletion durch unterschiedliche shRNAs einen di erentiellen Proliferationse ekt bei FL-APC induzierten im Vergleich zu kontrollbehandelten Zellen. Dieser di erentielle E ekt konnte in einem weiteren Modellsystem, SW480 Zellen mit konstitutiver FL-APC Expression, ebenfalls validiert werden. Durch Expression einer shRNA mit Aktivit{\"a}t gegen EIF2B5 werden in beiden Zellsystem die unfolded protein response (UPR) Gene DDIT3 und splXBP1 aktiviert. Interessanterweise werden durch die Expression von FL-APC diese Gene reprimiert. Im Promotor der EIF2B5-mRNA be ndet sich eine Bindestelle f{\"u}r MYC. Es ist denkbar, dass durch die Expression von FL-APC eine globale Ver{\"a}nderung der Genexpression vorgenommen wird, die einerseits eine Repression von EIF2B5 nach sich zieht aber andererseits eine hierdurch ausgel{\"o}ste ER-Stress Antwort verhindert. Eine Inhibition von EIF2B5 ohne diese Adaption andererseits f{\"u}hrt nach diesem Model zu einer UPR-aktivierten Apoptose. In einem zweiten Projekt wurde das {\"u}berraschende Verhalten von Kolonkarzinomzellen untersucht, die nach Zugabe von BEZ235, einem dualen PI3K/mTOR Inhibitor, trotz gegenteiliger Erwartungen MYC-Proteinmengen erh{\"o}hen. Eine Repression wurde erwar- tet, weil die Inhibition von PI3K einerseits zu einer proteasomalen Destabiliserung und andererseits die mTOR Inhibition zu einer verringerten Synthese von MYC f{\"u}hren sollte. W{\"a}hrend bereits gezeigt werden konnte, dass durch einen FOXO-vermittelten Mechanismus MAPK-abh{\"a}ngig die MYC-Expression verst{\"a}rkt wird, wurde in dieser Dissertation die erwartete Translationsinhibition untersucht. BEZ235 inhibiert zwar CAP-abh{\"a}ngige Translation, das MYC Protein wird jedoch aufgrund einer IRES-vermittelten Translation weiterhin exprimiert. Silvestrol, ein Inhibitor der Helikase eIF4A andererseits interveniert mit CAP- und IRES-abh{\"a}ngiger Translation und kann die MYC-Proteinkonzentrationen verringern. Wir konnten zudem feststellen, dass die Applikation von Silvestrol auch in vivo m{\"o}glich und wirksam ist und zudem tolleriert wird. Dies gibt Anlass zur Ho nung, dass eine Intervention der Translation auch im Menschen eine valide Strategie zur Behandlung MYC-getriebener Tumore sein k{\"o}nnte.},
  subject      = {Colonkrebs},
  language  = {de}
}
@phdthesis{Stuckensen2016,
  author    = {Stuckensen, Kai},
  title     = {Fabrication of hierarchical cell carrier matrices for tissue regeneration by directional solidification},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-145510},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2016},
  abstract  = {The key hypothesis of this work represented the question, if mimicking the zonal composition and structural porosity of musculoskeletal tissues influences invading cells positively and leads to advantageous results for tissue engineering. Conventional approaches in tissue engineering are limited in producing monolithic "scaffolds" that provide locally variating biological key signals and pore architectures, imitating the alignment of collagenous fibres in bone and cartilage tissues, respectively. In order to fill this gap in available tissue engineering strategies, a new fabrication technique was evolved for the production of scaffolds to validate the hypothesis. Therefore, a new solidification based platform procedure was developed. This process comprises the directional solidification of multiple flowable precursors that are "cryostructured" to prepare a controlled anisotropic pore structure. Porous scaffolds are attained through ice crystal removal by lyophilisation. Optionally, electrostatic spinning of polymers may be applied to provide an external mesh on top or around the scaffolds. A consolidation step generates monolithic matrices from multi zonal structures. To serve as matrix for tissue engineering approaches or direct implantation as medical device, the scaffold is sterilized. An Adjustable Cryostructuring Device (ACD) was successively developed; individual parts were conceptualized by computer aided design (CAD) and assembled. During optimisation, a significant performance improvement of the ACDs accessible external temperature gradient was achieved, from (1.3 ± 0.1) K/mm to (9.0 ± 0.1) K/mm. Additionally, four different configurations of the device were made available that enabled the directional solidification of collagenous precursors in a highly controlled manner with various sample sizes and shapes. By using alginate as a model substance the process was systematically evaluated. Cryostructuring diagraphs were analysed yielding solidification parameters, which were associated to pore sizes and alignments that were determined by image processing. Thereby, a precise control over pore size and alignment through electrical regulation of the ACD could be demonstrated. To obtain tissue mimetic scaffolds for the musculoskeletal system, collagens and calcium phosphates had to be prepared to serve as raw materials. Extraction and purification protocols were established to generate collagen I and collagen II, while the calcium phosphates brushite and hydroxyapatite were produced by precipitation reactions. Besides the successive augmentation of the ACD also an optimization of the processing steps was crucial. Firstly, the concentrations and the individual behaviour of respective precursor components had to be screened. Together with the insights gained by videographic examination of solidifying collagen solutions, essential knowledge was gained that facilitated the production of more complex scaffolds. Phenomena of ice crystal growth during cryostructuring were discussed. By evolutionary steps, a cryostructuring of multi-layered precursors with consecutive anisotropic pores could be achieved and successfully transferred from alginate to collagenous precursors. Finally, very smooth interfaces that were hardly detectable by scanning electron microscopy (SEM) could be attained. For the used collagenous systems, a dependency relation between adjustable processing parameters and different resulting solidification morphologies was created. Dehydrothermal-, diisocyanate-, and carbodiimide- based cross linking methods were evaluated, whereby the "zero length" cross linking by carbodiimide was found to be most suitable. Afterwards, a formulation for the cross linking solution was elaborated, which generated favourable outcomes by application inside a reduced pressure apparatus. As a consequence, a pore collapse during wet chemical cross linking could be avoided. Complex monolithic scaffolds featuring continuous pores were fabricated that mimicked structure and respective composition of different areas of native tissues by the presence of biochemical key stimulants. At first, three types of bone scaffolds were produced from collagen I and hydroxyapatite with appropriate sizes to fit critical sized defects in rat femurs. They either featured an isotropic or anisotropic porosity and partly also contained glycosaminoglycans (GAGs). Furthermore, meniscus scaffolds were prepared by processing two precursors with biomimetic contents of collagen I, collagen II and GAGs. Here, the pore structures were created under boundary conditions, which allowed an ice crystal growth that was nearly orthogonal to the external temperature gradient. Thereby, the preferential alignment of collagen fibres in the natural meniscus tissue could be mimicked. Those scaffolds owned appropriate sizes for cell culture in well plates or even an authentic meniscus shape and size. Finally, osteochondral scaffolds, sized to either fit well plates or perfusion reactors for cell culture, were fabricated to mimic the composition of subchondral bone and different cartilage zones. Collagen I and the resorbable calcium phosphate brushite were used for the subchondral zone, whereas the cartilage zones were composed out of collagen I, collagen II and tissue mimetic contents of GAGs. The pore structure corresponded to the one that is dominating the volume of natural osteochondral tissue. Energy dispersive X-ray spectroscopy (EDX) and SEM were used to analyse the composition and pore structure of the individual scaffold zones, respectively. The cross section pore diameters were determined to (65 ± 25) µm, (88 ± 35) µm and(93 ± 42) µm for the anisotropic, the isotropic and GAG containing isotropic bone scaffolds. Furthermore, the meniscus scaffolds showed pore diameters of (93 ± 21) µm in the inner meniscus zone and (248 ± 63) µm inside the outer meniscus zone. Pore sizes of (82 ± 25) µm, (83 ± 29) µm and (85 ± 39) µm were present inside the subchondral, the lower chondral and the upper chondral zone of osteochondral scaffolds. Depending on the fabrication parameters, the respective scaffold zones were also found to feature a specific micro- and nanostructure at their inner surfaces. Degradation studies were carried out under physiological conditions and resulted in a mean mass loss of (0.52 ± 0.13) \%, (1.56 ± 0.10) \% and (0.80 ± 0.10) \% per day for bone, meniscus and osteochondral scaffolds, respectively. Rheological measurements were used to determine the viscosity changes upon cooling of different precursors. Micro computer tomography (µ-CT) investigations were applied to characterize the 3D microstructure of osteochondral scaffolds. To obtain an osteochondral scaffold with four zones of tissue mimetic microstructure alignment, a poly (D, L-lactide-co-glycolide) mesh was deposited on the upper chondral zone by electrostatic spinning. In case of the bone scaffolds, the retention / release capacity of bone morphogenetic protein 2 (BMP-2) was evaluated by an enzyme linked immunosorbent assay (ELISA). Due to the high presence of attractive BMP binding sites, only less than 0.1 \% of the initially loaded cytokine was released. The suitability of combining the cryostructuring process with 3D powder printed calcium phosphate substrates was evaluated with osteochondral scaffolds, but did not appear to yield more preferable results than the non-combined approach. A new custom build confined compression setup was elaborated together with a suitable evaluation procedure for the mechanical characterisation under physiological conditions. For bone and cartilage scaffolds, apparent elastic moduli of (37.6 ± 6.9) kPa and (3.14 ± 0.85) kPa were measured. A similar behaviour of the scaffolds to natural cartilage and bone tissue was demonstrated in terms of elastic energy storage. Under physiological frequencies, less than 1.0 \% and 0.8 \% of the exerted energy was lost for bone and cartilage scaffolds, respectively. With average relaxation times of (0.613 ± 0.040) sec and (0.815 ± 0.077) sec, measured for the cartilage and bone scaffolds, they respond four orders of magnitude faster than the native tissues. Additionally, all kinds of produced scaffolds were able to withstand cyclic compression at un-physiological frequencies as high as 20 Hz without a loss in structural integrity. With the presented new method, scaffolds could be fabricated whose extent in mimicking of native tissues exceeded the one of scaffolds producible by state of the art methods. This allowed a testing of the key hypothesis: The biological evaluation of an anisotropic pore structure in vivo revealed a higher functionality of immigrated cells and led finally to advantageous healing outcomes. Moreover, the mimicking of local compositions in combination with a consecutive anisotropic porosity that approaches native tissue structures could be demonstrated to induce zone specific matrix remodelling in stem cells in vitro. Additionally, clues for a zone specific chondrogenic stem cell differentiation were attained without the supplementation of growth factors. Thereby, the hypothesis that an increased approximation of the hierarchically compositional and structurally anisotropic properties of musculoskeletal tissues would lead to an improved cellular response and a better healing quality, could be confirmed. With a special focus on cell free in situ tissue engineering approaches, the insights gained within this thesis may be directly transferred to clinical regenerative therapies.},
  subject      = {Tissue Engineering},
  language  = {en}
}
@phdthesis{Stoll2015,
  author    = {Stoll, Georg},
  title     = {Identification of the mRNA-associated TOP3β- TDRD3-FMRP (TTF) -complex and its implication for neurological disorders},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-111440},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2015},
  abstract  = {The propagation of the genetic information into proteins is mediated by messenger- RNA (mRNA) intermediates. In eukaryotes mRNAs are synthesized by RNA- Polymerase II and subjected to translation after various processing steps. Earlier it was suspected that the regulation of gene expression occurs primarily on the level of transcription. In the meantime it became evident that the contribution of post- transcriptional events is at least equally important. Apart from non-coding RNAs and metabolites, this process is in particular controlled by RNA-binding proteins, which assemble on mRNAs in various combinations to establish the so-called "mRNP- code". In this thesis a so far unknown component of the mRNP-code was identified and characterized. It constitutes a hetero-trimeric complex composed of the Tudor domain-containing protein 3 (TDRD3), the fragile X mental retardation protein (FMRP) and the Topoisomerase III beta (TOP3β) and was termed TTF (TOP3β-TDRD3-FMRP) -complex according to its composition. The presented results also demonstrate that all components of the TTF-complex shuttle between the nucleus and the cytoplasm, but are predominantly located in the latter compartment under steady state conditions. Apart from that, an association of the TTF-complex with fully processed mRNAs, not yet engaged in productive translation, was detected. Hence, the TTF-complex is a component of „early" mRNPs. The defined recruitment of the TTF-complex to these mRNPs is not based on binding to distinct mRNA sequence-elements in cis, but rather on an interaction with the so-called exon junction complex (EJC), which is loaded onto the mRNA during the process of pre-mRNA splicing. In this context TDRD3 functions as an adapter, linking EJC, FMRP and TOP3β on the mRNP. Moreover, preliminary results suggest that epigenetic marks within gene promoter regions predetermine the transfer of the TTF-complex onto its target mRNAs. Besides, the observation that TOP3β is able to catalytically convert RNA-substrates disclosed potential activities of the TTF-complex in mRNA metabolism. In combination with the already known functions of FMRP, this finding primarily suggests that the TTF-complex controls the translation of bound mRNAs. In addition to its role in mRNA metabolism, the TTF-complex is interesting from a human genetics perspective as well. It was demonstrated in collaboration with researchers from Finland and the US that apart from FMRP, which was previously linked to neurocognitive diseases, also TOP3β is associated with neurodevelopmental disorders. Understanding the function of the TTF-complex in mRNA metabolism might hence provide important insight into the etiology of these diseases.},
  subject      = {Messenger-RNS},
  language  = {en}
}
@phdthesis{Steinbacher2015,
  author    = {Steinbacher, Andreas Edgar},
  title     = {Circular dichroism and accumulative polarimetry of chiral femtochemistry},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-116500},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2015},
  abstract  = {This work brings forward successful implementations of ultrafast chirality-sensitive spectroscopic techniques by probing circular dichroism (CD) or optical rotation dispersion (ORD). Furthermore, also first steps towards chiral quantum control, i.e., the selective variation of the chiral properties of molecules with the help of coherent light, are presented. In the case of CD probing, a setup capable of mirroring an arbitrary polarization state of an ultrashort laser pulse was developed. Hence, by passing a left-circularly polarized laser pulse through this setup a right-circularly polarized laser pulse is generated. These two pulse enantiomers can be utilized as probe pulses in a pump--probe CD experiment. Besides CD spectroscopy, it can be utilized for anisotropy or ellipsometry spectroscopy also. Within this thesis, the approach is used to elucidate the photochemistry of hemoglobin, the oxygen transporting protein in mammalian blood. The oxygen loss can be triggered with laser pulses as well, and the results of the time-resolved CD experiment suggest a cascade-like relaxation, probably through different spin states, of the metallo-porphyrins in hemoglobin. The ORD probing was realized via the combination of common-path optical heterodyne interferometric polarimetry and accumulative femtosecond spectroscopy. Within this setup, on the one hand the applicability of this approach for ultrafast studies was demonstrated explicitly. On the other hand, the discrimination between an achiral and a racemic solution without prior spatial separation was realized. This was achieved by inducing an enantiomeric excess via polarized femtosecond laser pulses and following its evolution with the developed polarimeter. Hence, chiral selectivity was already achieved with this method which can be turned into chiral control if the polarized laser pulses are optimized to steer an enhancement of the enantiomeric excess. Furthermore, within this thesis, theoretical prerequisites for anisotropy-free pump--probe experiments with arbitrary polarized laser pulses were derived. Due to the small magnitude of optical chirality-sensitve signals, these results are important for any pump--probe chiral spectroscopy, like the CD probing presented in this thesis. Moreover, since for chiral quantum control the variation of the molecular structure is necessary, the knowledge about rearrangement reactions triggered by photons is necessary. Hence, within this thesis the ultrafast Wolff rearrangement of an α-diazocarbonyl was investigated via ultrafast photofragment ion spectroscopy in the gas phase. Though the compound is not chiral, the knowledge about the exact reaction mechanism is beneficial for future studies of chiral compounds.},
  subject      = {Ultrakurzzeitspektroskopie},
  language  = {en}
}