@phdthesis{FlatenAndersen2013,
  author    = {Fl{\aa}ten Andersen, Hanne},
  title     = {New Materials for Lithium-Ion Batteries},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-101434},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2013},
  abstract  = {Over the last decades, lithium-ion batteries have grown more important and substituted other energy storage systems. Due to advantages such as high energy density and low self-discharge, the lithium-ion battery has taken its part in the rechargeable energy storage market, and it is now found in most laptops, cameras and mobile phones. With the increasing demands for electrical vehicles and stationary energy storage systems, there is a necessity for improved lithium-ion battery materials. In this thesis several alternative electrode materials have been examined with a main focus on the electrochemical characterisation. As an alternative to the commercial cathode LiCoO2, the LiMn2O4 cathode has been suggested due to its reduced toxicity, material abundance, reduced costs and increased specific capacity. On the anode side, several Sn-containing anodes have been investigated and steps to overcome the main challenge, the great volume expansion upon cycling, have been taken. In addition, a novel anode material group was synthesised at the University of Marburg and two substances of the lithium chalcogenidometalate networks were successfully characterised. The cathode material, LiMn2O4, was synthesised via the sol-gel technique and several coating methods such as dip-coating, electrophoretics and infiltration were investigated. The LiMn2O4 material was initially coated on a porous metal foam as a current collector, thus providing new possibilities as the porosity of the substrate increased, mechanical stability and adhesion improved and a 3-dimensional network was obtained. In order to compare the results of the LiMn2O4 cathode material on the novel current collector, the material was also coated on a standard metallic foil and characterised. The analysis followed via X-ray diffraction, electron microscopy, thermogravimetrical analysis and several electrochemical techniques. Tin containing anode materials were chosen due to the doubling of the theoretical capacity compared with the commercially used graphite. However, a great challenge lies with using tin or tin-containing anode materials. Upon lithiation of Sn, the material can expand up to 300 \%, therefore a stabilising effect is necessary to avoid a collapse of the material. This work shows several new concepts and attempts to overcome this challenge, including SnO2 nanowires deposited via chemical vapour deposition on both metallic foam and standard current collectors. A new improvement consisted of the tin - carbon nanofibers where the nanofibers form a stabilising matrix that can partially buffer the volume change of the Sn particles. The synthesis of the Sn-containing anodes took place at the University of Cologne, while characterisation, cell preparation and optimising the electrode system were features of this thesis. In addition, a lithium chalcogenidometalate network proved to be an interesting, new anode material group. Both Li4MnSn2Se7 and Li4MnGe2S7 (synthesised at Philipps-Universit{\"a}t Marburg) were electrochemically examined to better understand the lithiation processes. Both materials obtained very high specific capacities and were found to be possible alternatives to the state-of-the art anodes. All the examined electrode materials were found to have some advantage over the commercially used LiCoO2 and graphite electrodes, and a thorough characterization of the materials was performed to understand the processes that took place.},
  subject      = {Lithium-Ionen-Akkumulator},
  language  = {en}
}
@phdthesis{Gold2023,
  author    = {Gold, Lukas},
  title     = {Methods for the state estimation of lithium-ion batteries},
  doi       = {10.25972/OPUS-30618},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-306180},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2023},
  abstract  = {This work introduced the reader to all relevant fields to tap into an ultrasound-based state of charge estimation and provides a blueprint for the procedure to achieve and test the fundamentals of such an approach. It spanned from an in-depth electrochemical characterization of the studied battery cells over establishing the measurement technique, digital processing of ultrasonic transmission signals, and characterization of the SoC dependent property changes of those signals to a proof of concept of an ultrasound-based state of charge estimation. The State of the art \& theoretical background chapter focused on the battery section on the mechanical property changes of lithium-ion batteries during operation. The components and the processes involved to manufacture a battery cell were described to establish the fundamentals for later interrogation. A comprehensive summary of methods for state estimation was given and an emphasis was laid on mechanical methods, including a critical review of the most recent research on ultrasound-based state estimation. Afterward, the fundamentals of ultrasonic non-destructive evaluation were introduced, starting with the sound propagation modes in isotropic boundary-free media, followed by the introduction of boundaries and non-isotropic structure to finally approach the class of fluid-saturated porous media, which batteries can be counted to. As the processing of the ultrasonic signals transmitted through lithium-ion battery cells with the aim of feature extraction was one of the main goals of this work, the fundamentals of digital signal processing and methods for the time of flight estimation were reviewed and compared in a separate section. All available information on the interrogated battery cell and the instrumentation was collected in the Experimental methods \& instrumentation chapter, including a detailed step-by-step manual of the process developed in this work to create and attach a sensor stack for ultrasonic interrogation based on low-cost off-the-shelf piezo elements. The Results \& discussion chapter opened with an in-depth electrochemical and post-mortem interrogation to reverse engineer the battery cell design and its internal structure. The combination of inductively coupled plasma-optical emission spectrometry and incremental capacity analysis applied to three-electrode lab cells, constructed from the studied battery cell's materials, allowed to identify the SoC ranges in which phase transitions and staging occur and thereby directly links changes in the ultrasonic signal properties with the state of the active materials, which makes this work stand out among other studies on ultrasound-based state estimation. Additional dilatometer experiments were able to prove that the measured effect in ultrasonic time of flight cannot originate from the thickness increase of the battery cells alone, as this thickness increase is smaller and in opposite direction to the change in time of flight. Therefore, changes in elastic modulus and density have to be responsible for the observed effect. The construction of the sensor stack from off-the-shelf piezo elements, its electromagnetic shielding, and attachment to both sides of the battery cells was treated in a subsequent section. Experiments verified the necessity of shielding and its negligible influence on the ultrasonic signals. A hypothesis describing the metal layer in the pouch foil to be the transport medium of an electrical coupling/distortion between sending and receiving sensor was formulated and tested. Impedance spectroscopy was shown to be a useful tool to characterize the resonant behavior of piezo elements and ensure the mechanical coupling of such to the surface of the battery cells. The excitation of the piezo elements by a raised cosine (RCn) waveform with varied center frequency in the range of 50 kHz to 250 kHz was studied in the frequency domain and the influence of the resonant behavior, as identified prior by impedance spectroscopy, on waveform and frequency content was evaluated to be uncritical. Therefore, the forced oscillation produced by this excitation was assumed to be mechanically coupled as ultrasonic waves into the battery cells. The ultrasonic waves transmitted through the battery cell were recorded by piezo elements on the opposing side. A first inspection of the raw, unprocessed signals identified the transmission of two main wave packages and allowed the identification of two major trends: the time of flight of ultrasonic wave packages decreases with the center frequency of the RCn waveform, and with state of charge. These trends were to be assessed further in the subsequent sections. Therefore, methods for the extraction of features (properties) from the ultrasonic signals were established, compared, and tested in a dedicated section. Several simple and advanced thresholding methods were compared with envelope-based and cross-correlation methods to estimate the time of flight (ToF). It was demonstrated that the envelope-based method yields the most robust estimate for the first and second wave package. This finding is in accordance with the literature stating that an envelope-based method is best suited for dispersive, absorptive media [204], to which lithium-ion batteries are counted. Respective trends were already suggested by the heatmap plots of the raw signals vs. RCn frequency and SoC. To enable such a robust estimate, an FIR filter had to be designed to preprocess the transmitted signals and thereby attenuate frequency components that verifiably lead to a distorted shape of the envelope. With a robust ToF estimation method selected, the characterization of the signal properties ToF and transmitted energy content (EC) was performed in-depth. A study of cycle-to-cycle variations unveiled that the signal properties are affected by a long rest period and the associated relaxation of the multi-particle system "battery cell" to equilibrium. In detail, during cycling, the signal properties don't reach the same value at a given SoC in two subsequent cycles if the first of the two cycles follows a long rest period. In accordance with the literature, a break-in period, making up for more than ten cycles post-formation, was observed. During this break-in period, the mechanical properties of the system are said to change until a steady state is reached [25]. Experiments at different C-rate showed that ultrasonic signal properties can sense the non-equilibrium state of a battery cell, characterized by an increasing area between charge and discharge curve of the respective signal property vs. SoC plot. This non-equilibrium state relaxes in the rest period following the discharge after the cut-off voltage is reached. The relaxation in the rest period following the charge is much smaller and shows little C-rate dependency as the state is prepared by constant voltage charging at the end of charge voltage. For a purely statistical SoC estimation approach, as employed in this work, where only instantaneous measurements are taken into account and the historic course of the measurement is not utilized as a source of information, the presence of hysteresis and relaxation leads to a reduced estimation accuracy. Future research should address this issue or even utilize the relaxation to improve the estimation accuracy, by incorporating historic information, e.g., by using the derivative of a signal property as an additional feature. The signal properties were then tested for their correlation with SoC as a function of RCn frequency. This allowed identifying trends in the behavior of the signal properties as a function of RCn frequency and C-rate in a condensed fashion and thereby enabled to predict the frequency range, about 50 kHz to 125 kHz, in which the course of the signal properties is best suited for SoC estimation. The final section provided a proof of concept of the ultrasound-based SoC estimation, by applying a support vector regression (SVR) to before thoroughly studied ultrasonic signal properties, as well as current and battery cell voltage. The included case study was split into different parts that assessed the ability of an SVR to estimate the SoC in a variety of scenarios. Seven battery cells, prepared with sensor stacks attached to both faces, were used to generate 14 datasets. First, a comparison of self-tests, where a portion of a dataset is used for training and another for testing, and cross-tests, which use the dataset of one cell for training and the dataset of another for testing, was performed. A root mean square error (RMSE) of 3.9\% to 4.8\% SoC and 3.6\% to 10.0\% SoC was achieved, respectively. In general, it was observed that the SVR is prone to overestimation at low SoCs and underestimation at high SoCs, which was attributed to the pronounced hysteresis and relaxation of the ultrasonic signal properties in this SoC ranges. The fact that higher accuracy is achieved, if the exact cell is known to the model, indicates that a variation between cells exists. This variation between cells can originate from differences in mechanical properties as a result of production variations or from differences in manual sensor placement, mechanical coupling, or resonant behavior of the ultrasonic sensors. To mitigate the effect of the cell-to-cell variations, a test was performed, where the datasets of six out of the seven cells were combined as training data, and the dataset of the seventh cell was used for testing. This reduced the spread of the RMSE from (3.6 - 10.0)\% SoC to (5.9 - 8.5)\% SoC, respectively, once again stating that a databased approach for state estimation becomes more reliable with a large data basis. Utilizing self-tests on seven datasets, the effect of additional features on the state estimation result was tested. The involvement of an additional feature did not necessarily improve the estimation accuracy, but it was shown that a combination of ultrasonic and electrical features is superior to the training with these features alone. To test the ability of the model to estimate the SoC in unknown cycling conditions, a test was performed where the C-rate of the test dataset was not included in the training data. The result suggests that for practical applications it might be sufficient to perform training with the boundary of the use cases in a controlled laboratory environment to handle the estimation in a broad spectrum of use cases. In comparison with literature, this study stands out by utilizing and modifying off-the-shelf piezo elements to equip state-of-the-art lithium-ion battery cells with ultrasonic sensors, employing a range of center frequencies for the waveform, transmitted through the battery cell, instead of a fixed frequency and by allowing the SVR to choose the frequency that yields the best result. The characterization of the ultrasonic signal properties as a function of RCn frequency and SoC and the assignment of characteristic changes in the signal properties to electrochemical processes, such as phase transitions and staging, makes this work unique. By studying a range of use cases, it was demonstrated that an improved SoC estimation accuracy can be achieved with the aid of ultrasonic measurements - thanks to the correlation of the mechanical properties of the battery cells with the SoC.},
  subject      = {Lithium-Ionen-Akkumulator},
  language  = {en}
}
@phdthesis{Grotz2013,
  author    = {Grotz, Michael},
  title     = {Synthese und Charakterisierung abiotischer Foldamere und ihrer Bausteine f{\"u}r die Nutzung in biologischen Systemen},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-96486},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2013},
  abstract  = {Die vorliegende Arbeit befasst sich mit der Synthese, Charakterisierung und Untersuchung von Foldameren und ihren Untereinheiten im Rahmen des FOLDAPPI-Projekts (Foldamers against Protein-Protein Interaction). Des Weiteren wurden neuartig substituierte Chinoline dargestellt, um sie im Rahmen des SFB 630 auf ihre Hemmwirkung gegen Leishmanien und Trypanosomen zu untersuchen. Im ersten Projekt wurde ein neuartiges Monomer entwickelt, welches die Wasserl{\"o}slichkeit der Foldamere verbessern sollte. Zu diesem Zweck wurde eine zus{\"a}tzliche, hoch polare Seitenkette in den Chinolingrundk{\"o}rper eingef{\"u}hrt. Dieses modifizierte Monomer konnte erfolgreich synthetisiert werden. Um die Verbesserung der Wasserl{\"o}slichkeit gegen{\"u}ber dem zuvor verwendeten Monomer zu testen, wurde erfolgreich ein Tetramer daraus aufgebaut. Das entsch{\"u}tzte Tetramer konnte jedoch aufgrund seiner hohen Polarit{\"a}t nicht ausreichend gereinigt werden, um die abschließenden L{\"o}slichkeitsuntersuchungen durchzuf{\"u}hren. Um dieses Problem zu umgehen, wurde von der Umsetzung in L{\"o}sung auf Reaktionen an der Festphase gewechselt, was die Reinigung der Produkte wesentlich erleichtern sollte. Dabei wurde eine vom Arbeitskreis von I. Huc neu entwickelte mikrowellengest{\"u}tzte Methode verwendet. Das Referenzmolek{\"u}l mit den bisher verwendeten Seitenketten konnte so ohne Probleme synthetisiert und seine L{\"o}slichkeit in Wasser bestimmt werden. Beim neu entwickelten Monomer kam es allerdings beim Aufbau des Tetrameres zu einer Zersetzungsreaktion, weshalb das abschließende Ziel nicht erreicht werden konnte. Im zweiten Projekt wurden zwei Ziele angestrebt: Zun{\"a}chst sollte ein Weg gefunden werden, die Einf{\"u}hrung der Seitenketten an den Chinolinen erst an der festen Phase vorzunehmen, wodurch viele Syntheseschritte bei der Vorbereitung der Monomere gespart werden k{\"o}nnten. Zus{\"a}tzlich sollte eine neue Kupplungsreaktion entwickelt werden, wodurch der Entsch{\"u}tzungsschritt des zu kuppelnden Amins an der Festphase eingespart werden kann. Dadurch w{\"u}rde vor allem bei großen Foldameren das Harz geschont und die Gefahr einer Degenerierung wesentlich verringert. F{\"u}r die Kupplungsreaktion vorgesehen war ein azidfunktionalisiertes Monomer, das mittels Staudinger-Reaktion verkn{\"u}pft werden sollte. Das entsprechende Monomer konnte erfolgreich synthetisiert werden. Auch das erste Ziel, die Einf{\"u}hrung der Seitenkette an der Festphase, konnte erfolgreich durchgef{\"u}hrt werden. Leider war die Verwirklichung beider Ziele {\"u}ber die gleiche Syntheseroute nicht ohne weiteres m{\"o}glich. Da das Monomer ohne die Seitenkette deutlich hydrophiler wurde, w{\"a}re eine Trocknungsmethode bei erh{\"o}hter Temperatur von Vorteil gewesen, um gebundenes Wasser vollst{\"a}ndig zu entfernen. Da das Monomer allerdings auch eine Azidfunktion tr{\"a}gt und sich bei 130 °C explosionsartig zersetzt, war dies nicht m{\"o}glich. Allerdings gen{\"u}gen bereits geringe Spuren von Feuchtigkeit, um die Staudinger-Reaktion zu beeintr{\"a}chtigten. Deshalb konnte das zweite Projektziel nicht verwirklicht werden. Im dritten Projekt wurde die Herstellung einer großen Foldamer-Bibliothek f{\"u}r die Untersuchung der Bindungsaffinit{\"a}t gegen{\"u}ber IL-4 angestrebt. Sie sollte aus 48 Hexameren bestehen, wobei an drei Monomeren die Seitenketten variiert werden sollten, um ein breites Spektum an verschiedenen Kombinationen von Wechselwirkungen abzudecken. Dazu wurden zun{\"a}chst vier verschiedene Monomere synthetisiert, welche eine aromatisch, eine unpolare, eine anionische bzw. eine kationische Seitenkette enthielten. F{\"u}r die Kupplung der Foldamere wurde eine an die Synthese von Aminos{\"a}uresequenzen angelehnte Methode entwickelt und erfolgreich angewandt. So konnten alle 48 Foldamere erfolgreich synthetisiert und 46 von ihnen in ausreichenden Mengen f{\"u}r die Untersuchung an IL-4 gereinigt werden. Leider liegen f{\"u}r diese Bibliothek bisher keine abschließenden Ergebnisse {\"u}ber die Inhibitionseigenschaften gegen{\"u}ber IL-4 vor. Strukturell sehr {\"a}hnliche Foldamere zeigten jedoch in ersten Experimenten eine Inhibition von IL-4 was eine Wirksamkeit der neu erstellten Bibliothek vermuten l{\"a}sst. Das vierte Projekt wurde im Rahmen des SFB 630 durchgef{\"u}hrt. Hierzu wurden einige der urspr{\"u}nglich f{\"u}r andere Projekte hergestellten Foldamere ausgew{\"a}hlt, teilweise entsch{\"u}tzt bzw. an der Nitrogruppe reduziert und anschließend auf Ihre Aktivit{\"a}t gegen Leishmanien und Trypanosomen getestet. Es zeigte sich, dass das verwendete Substitutionsmuster, in den gestesteten Konzentrationen nicht gegen Leishmanien und Trypanosomen wirksam ist. Es eignet sich also nicht f{\"u}r die Erstellung einer neuen Leitstruktur gegen diese beiden Erreger. Allerdings trat im untersuchten Konzentrationsbereich auch keine Zytotoxizit{\"a}t auf, was eine interessante Information f{\"u}r die Verwendung der Foldamere und ihrer Bausteine in biologischen Systemen darstellt.},
  subject      = {Foldamere},
  language  = {de}
}
@phdthesis{Hahn2022,
  author    = {Hahn, Lukas},
  title     = {Novel Thermoresponsive Hydrogels Based on Poly(2-oxazoline)s and Poly(2-oxazine)s and their Application in Biofabrication},
  doi       = {10.25972/OPUS-27129},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-271299},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2022},
  abstract  = {In this work, the influence of aromatic structures on drug encapsulation, self-assembly and hydrogel formation was investigated. The physically crosslinked gelling systems were characterized and optimized for the use in biofabrication and applied in initial (bio)printing experiments. Chapter I: The cytocompatible (first in vitro and in vivo studies) amphiphile PMeOx-b-PBzOx-b- PMeOx (A-PBzOx-A) was used for the solubilization of PTX, schizandrin A (SchA), curcumin (CUR), niraparib and HS-173. Chapter II: Compared to the polymers A-PPheOx-A, A-PBzOx-A and A-PBzOzi-A, only the polymer A-PPheOzi-A showed a reversible temperature- and concentration-dependent inverse thermogelation, which is accompanied by a morphology change from long wormlike micelles in the gel to small spherical micelles in solution. The worm formation results from novel interactions between the hydrophilic and hydrophobic aromatic polymer blocks. Changes in the hydrophilic block significantly alter the gel system. Rheological properties can be optimized by concentration and temperature, which is why the hydrogel was used to significantly improve the printability and stability of Alg in a blend system. Chapter III: By extending the side chain of the aromatic hydrophobic block, the inverse thermogelling polymer A-poly(2-phenethyl-2-oxazoline)-A (A-PPhenEtOx-A) is obtained. Rapid gelation upon cooling is achieved by inter-correlating spherical micelles. Based on ideal rheological properties, first cytocompatible bioprinting experiments were performed in combination with Alg. The polymers A- poly(2-benzhydryl-2-oxazoline)-A (A-PBhOx-A) and A-poly(2-benzhydryl-2-oxazine) (A-PBhOzi-A) are characterized by two aromatic benzyl units per hydrophobic repeating unit. Only the polymer A- PBhOzi-A exhibited inverse thermogelling behavior. Merging micelles could be observed by electron microscopy. The system was rheologically characterized and discussed with respect to an application in 3D printing. Chapter IV: The thermogelling POx/POzi system, in particular the block copolymer PMeOx-b- PnPrOzi, was used in different applications in the field of biofabrication. The introduction of maleimide and furan units along the hydrophilic polymer part ensured additional stabilization by Diels-Alder crosslinking after the printing process.},
  subject      = {Polymer Science},
  language  = {en}
}
@phdthesis{Halmen2021,
  author    = {Halmen, Norbert},
  title     = {Vernetzungsgrad unter der Lupe : Zerst{\"o}rungsfreie Pr{\"u}fung mit unilateraler NMR},
  publisher = {W{\"u}rzburg University Press},
  address   = {W{\"u}rzburg},
  isbn      = {978-3-95826-160-0},
  doi       = {10.25972/WUP-978-3-95826-161-7},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-233506},
  school      = {W{\"u}rzburg University Press},
  pages     = {xv, 182},
  year      = {2021},
  abstract  = {Der Vernetzungsgrad von Klebstoffen und strahlenvernetzter Kunststoffformteile beeinflusst zahlreiche Materialeigenschaften und ist von essenzieller Bedeutung f{\"u}r die Funktionalit{\"a}t von Klebeverbindungen und die Best{\"a}ndigkeit medizinischer Implantate. Die zerst{\"o}rungsfreie Pr{\"u}fung dieser Qualit{\"a}tsgr{\"o}ße ist von großem industriellem Interesse, aber noch nicht Stand der Technik. Die unilaterale Kernspinresonanz (uNMR) ist ein vielversprechendes Verfahren zur L{\"o}sung dieser Problematik. In diesem Buch wird die nicht-invasive Vernetzungsgradpr{\"u}fung von strahlenvernetztem UHMWPE und verschiedenen Klebstoffen mittels uNMR demonstriert. Auf Basis der guten Korrelation mit praxisrelevanten Referenzmethoden (thermisch, rheologisch, dielektrisch) wurden Vergleichsmodelle entwickelt, welche Anwendern von Klebstoffen und vernetzten Kunststoffformteilen den Einsatz der uNMR zur zerst{\"o}rungsfreien Qualit{\"a}tssicherung erm{\"o}glichen.},
  subject      = {Magnetische Kernresonanz},
  language  = {de}
}
@phdthesis{He2024,
  author    = {He, Feng},
  title     = {Drug Discovery based on Oxidative Stress and HDAC6 for Treatment of Neurodegenerative Diseases},
  doi       = {10.25972/OPUS-25349},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-253497},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2024},
  abstract  = {Most antioxidants reported so far only achieved limited success in AD clinical trials. Growing evidences suggest that merely targeting oxidative stress will not be sufficient to fight AD. While multi-target directed ligands could synergistically modulate different steps in the neurodegenerative process, offering a promising potential for treatment of this complex disease. Fifteen target compounds have been designed by merging melatonin and ferulic acid into the cap group of a tertiary amide HDAC6 inhibitor. Compound 10b was screened as the best hybrid molecule exhibit potent HDAC6 inhibition and potent antioxidant capacity. Compound 10b also alleviated LPS-induced microglia inflammation and led to a switch from neurotoxic M1 to the neuroprotective M2 microglial phenotype. Moreover, compound 10b show pronounced attenuation of spatial working memory and long-term memory damage in an in vivo AD mouse model. Compound 10b can be a potentially effective drug candidate for treatment of AD and its druggability worth to be further studied. We have designed ten novel neuroprotectants by hybridizing with several common antioxidants, including ferulic acid, melatonin, lipoic acid, and trolox. The trolox hybrid compound exhibited the most potent neuroprotective effects in multiple neuroprotection assays. Besides, we identified the synergistic effects between trolox and vitamin K derivative, and our trolox hybrid compound showed comparable neuroprotection with the mixture of trolox and vitamin K derivative. We have designed and synthesized 24 quinone derivatives based on five kinds of different quinones including ubiquinone, 2,3,5-trimethyl-1,4-benzoquinone, memoquin, thymoquinone, and anthraquinone. Trimethylbenzoquinone and thymoquinone derivatives showed more potent neuroprotection than other quinones in oxytosis assay. Therefore, trimethylbenzoquinone and thymoquinone derivatives can be used as lead compounds for further mechanism study and drug discovery for treatment of neurodegenerative disease. We designed a series of photoswitchable HDAC inhibitors, which could be effective molecular tools due to the high spatial and temporal resolution. In total 23 target compounds were synthesized and photophysicochemically characterized. Azoquinoline-based compounds possess more thermally stable cis-isomers in buffer solution, which were further tested in enzyme-based HDAC inhibition assay. However, none of those tested compounds show significant differences in activities between trans-isomers and corresponding cis-isomers.},
  subject      = {Alzheimerkrankheit},
  language  = {en}
}
@phdthesis{HorvatCsotigebHorvat2021,
  author    = {Horvat-Cs{\´o}ti [geb. Horvat], Sonja},
  title     = {Development of Nanocarriers for Treatment and Diagnostics of Aspergillosis},
  doi       = {10.25972/OPUS-23821},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-238218},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2021},
  abstract  = {This thesis aimed to evaluate the possibility to use nanoparticles as antifungal drug carriers as well as their potential application in screening and diagnostics of invasive aspergillosis. The interaction of nanogels, superparamagnetic iron oxide nanoparticles (SPIOs) and gold nanoparticles (GNP) with fungal-specific polysaccharides, cells and biofilms was investigated. Firstly, it was evaluated how the charge of nanogels influence their interaction with fungal cells. Linear poly(glycidol)s (pG) and poly(2-methyl-2-oxazoline) (pMOx) polymers were synthesized and further functionalized with thiol groups for preparation of redox responsive nanogels. Results showed that negatively charged nanogels were internalized by the fungi to a much greater extent than positively charged ones. Furthermore, it was investigated how amphiphilicity of polymers used for preparation of nanogels influences nanogel-fungi interaction. It was concluded that nanogels prepared from polymers with degree of functionalization of 10\% had the strongest interaction, regardless the length of the alkyl chain. Moreover, amphotericin B-loaded nanogels had a higher antifungal effect and lower toxicity towards mammalian cells than the free drug. In addition, inverse nanoprecipitation of thiol functionalized pGs was shown to be successful for preparation of nanogels with narrow size distribution. It was also demonstrated that crosslinking of the polymeric coating in hydrogel-like network with thiol functionalized pGs improved the SPIOs imaging performance. Finally, it was investigated whether GNPs could be used as model particles for the assessment of targeting to fungi. Fc dectin-1 was conjugated covalently to GNPs decorated with pGs, and binding affinity towards β-glucans was tested by surface plasmon resonance. In summary, this thesis demonstrated evidence for the potential of pG nanogels and pG coated nanoparticles for antifungal therapy and diagnostics of fungal infections caused by A. fumigatus.},
  subject      = {Therapeutisches System},
  language  = {en}
}
@phdthesis{Hoerl2014,
  author    = {H{\"o}rl, Christian},
  title     = {Synthese und Reaktivit{\"a}t von heteroaromatisch-substituierten Borolen und Diborenen},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-94391},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2014},
  abstract  = {Im Rahmen dieser Arbeit konnten erstmals die Eigenschaften von 1-heteroaromatisch-substituierten, freien Borolen des Typs R′BC4Ph4 untersucht werden. Der Rest R′ wurde unter Verwendung von bekannten Synthesemethoden (Zinn-Bor-Austausch, Salzeliminierung) variiert und die Borolderivate 45 (R′ = Thien-2-yl), 46 (R′ = 5-Methylfuran-2-yl), 47 (R′ = 5-Trimethylsilylthien-2-yl) und 49 (R′ = N-Methylpyrrol-3-yl) erfolgreich synthetisiert und vollst{\"a}ndig charakterisiert (Multikern-NMR-Spektroskopie, Elementaranalyse, R{\"o}ntgenstrukturanalyse am Einkristall). Des Weiteren ist es gelungen, die ersten Bis(borole) mit den heteroaromatischen Br{\"u}ckeneinheiten 2,5-Thienyl (54) und 5,5′-Bithiophen (55) mittels Zinn-Bor-Austausch-Reaktion darzustellen. Die Molek{\"u}lstruktur von 54 best{\"a}tigt dabei nicht nur die erfolgreiche Synthese, sondern auch die coplanare Ausrichtung der drei Ringsysteme zueinander. Anhand von cyclovoltammetrischen Messungen konnte gezeigt werden, dass in diesem -konjugierten Akzeptor-Donor-Akzeptor-System (54) eine ausgepr{\"a}gte Kommunikation zwischen den beiden Borzentren vorliegt. Dadurch ergeben sich vier irreversible Reduktionsereignisse, die ausgehend von 54, dem Monoanion [54]•-, dem Dianion [54]2-, dem Trianion [54]3- und dem Tetraanion [54]4- zugewiesen werden k{\"o}nnen. Das Verhalten von 54 gegen{\"u}ber Reduktion wurde außerdem nicht nur elektrochemisch, sondern auch mithilfe unterschiedlicher Reduktionsmittel analysiert. Die Reduktion mit einem halben {\"A}quivalent des Zwei-Elektronen-Reduktionsmittels Magnesiumanthracen f{\"u}hrte dabei zu dem vollst{\"a}ndig delokalisierten Monoanion Mg0.5[54], welches ESR-spektroskopisch charakterisiert werden konnte. Die Reduktion mit einem {\"A}quivalent Magnesiumanthracen bzw. zwei {\"A}quivalenten des Ein-Elektronen-Reduktionsmittels CoCp*2 lieferte das Dianion [54]2-, das f{\"u}r den Fall von [CoCp*2]2[54] im Festk{\"o}rper studiert werden konnte. Die Molek{\"u}lstruktur belegt, dass es sich bei Dianion [54]2- nicht um ein diradikalisches, sondern ein diamagnetisches, chinoides System handelt, welches auch als Bipolaron beschrieben werden kann. Der Einfluss von heteroaromatischen Substituenten wurde außerdem im Hinblick auf die Synthese neuartiger Basen-stabilisierter Diborene untersucht. Durch reduktive Kupplung geeigneter NHC-stabilisierter Dihalogenborane 77 und 78 (NHC = IMe) konnten die beiden Thienyl-substituierten Diborene 81 und 82 in sehr guten Ausbeuten (81: 82\%; 82: 89\%) dargestellt werden. UV-Vis-spektroskopische Untersuchungen und quantenchemische Rechnungen belegen, dass das HOMO der Diborene durch die -Bindung der BB-Bindung repr{\"a}sentiert wird. Im Gegensatz zu den bekannten Aryl-substituierten Diborenen (73, 74) zeigt die Festk{\"o}rperstruktur von 82 eine coplanare Ausrichtung der Heterocyclen relativ zur BB-Bindungsebene. Dadurch wird die sterische Abschirmung der reaktiven BB-Doppelbindung vermindert und weitere Reaktivit{\"a}tsuntersuchungen in Analogie zur Reaktivit{\"a}t von CC-Doppelbindungen k{\"o}nnen durchgef{\"u}hrt werden.},
  subject      = {Borole},
  language  = {de}
}
@phdthesis{Jarzina2022,
  author    = {Jarzina, Sebastian Oskar},
  title     = {Assessment of systemic toxicity in vitro using the Adverse Outcome Pathway (AOP) concept: nephrotoxicity due to receptor-mediated endocytosis and lysosomal overload and inhibition of mtDNA polymerase-ɣ as case studies},
  doi       = {10.25972/OPUS-26484},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-264842},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2022},
  abstract  = {The US National Research Council (NRC) report "Toxicity Testing in the 21st Century: A Vision and a strategy (Tox21)", published in 2007, calls for a complete paradigm shift in tox-icity testing. A central aspect of the proposed strategy includes the transition from apical end-points in in vivo studies to more mechanistically based in vitro tests. To support and facilitate the transition and paradigm shift in toxicity testing, the Adverse Outcome Pathway (AOP) concept is widely recognized as a pragmatic tool. As case studies, the AOP concept was ap-plied in this work to develop AOPs for proximal tubule injuries initiated by Receptor-mediated endocytosis and lysosomal overload and Inhibition of mtDNA polymerase-. These AOPs were used as a mechanistic basis for the development of in vitro assays for each key event (KE). To experimentally support the developed in vitro assays, proximal tubule cells from rat (NRK-52E) and human (RPTEC/TERT1) were treated with model compounds. To measure the dis-turbance of lysosomal function in the AOP - Receptor-mediated endocytosis and lysosomal overload, polymyxin antibiotics (polymyxin B, colistin, polymyxin B nonapeptide) were used as model compounds. Altered expression of lysosomal associated membrane protein 1/2 (LAMP-1/2) (KE1) and cathepsin D release from lysosomes (KE2) were determined by im-munofluorescence, while cytotoxicity (KE3) was measured using the CellTiter-Glo® cell via-bility assay. Importantly, significant differences in polymyxin uptake and susceptibility be-tween cell lines were observed, underlining the importance of in vitro biokinetics to determine an appropriate in vitro point of departure (PoD) for risk assessment. Compared to the in vivo situation, distinct expression of relevant transporters such as megalin and cubilin on mRNA and protein level in the used cell lines (RPTEC/TERT1 and NRK-52E) could not be con-firmed, making integration of quantitative in vitro to in vivo extrapolations (QIVIVE) neces-sary. Integration of QIVIVE by project partners of the University of Utrecht showed an im-provement in the modelled biokinetic data for polymyxin B. To assess the first key event, (KE1) Depletion of mitochondrial DNA, in the AOP - Inhibition of mtDNA polymerase-, a RT-qPCR method was used to determine the mtDNA copy number in cells treated with mod-el compounds (adefovir, cidofovir, tenofovir, adefovir dipivoxil, tenofovir disoproxil fumarate). Mitochondrial toxicity (KE2) was measured by project partners using the high-content imaging technique and MitoTracker® whereas cytotoxicity (KE3) was determined by CellTiter-Glo® cell viability assay. In contrast to the mechanistic hypothesis underlying the AOP - Inhibition of mtDNA polymerase-, treatment with model compounds for 24 h resulted in an increase rather than a decrease in mtDNA copy number (KE1). Only minor effects on mitochondrial toxicity (KE2) and cytotoxicity (KE3) were observed. Treatment of RPT-EC/TERT1 cells for 14 days showed only a slight decrease in mtDNA copy number after treatment with adefovir dipivoxil and tenofovir disoproxil fumarate, underscoring some of the limitations of short-term in vitro systems. To obtain a first estimation for risk assessment based on in vitro data, potential points of departure (PoD) for each KE were calculated from the obtained in vitro data. The most common PoDs were calculated such as the effect concentra-tion at which 10 \% or 20_\% effect was measured (EC10, EC20), the highest no observed effect concentration (NOEC), the lowest observed effect concentration (LOEC), the benchmark 10 \% (lower / upper) concentrations (BMC10, BMCL10, BMCU10) and a modelled non-toxic con-centration (NtC). These PoDs were then compared with serum and tissue concentrations de-termined from in vivo studies after treatment with therapeutic / supratherapeutic doses of the respective drugs in order to obtain a first estimate of risk based on in vitro data. In addition, AOPs were used to test whether the quantitative key event relationships between key events allow prediction of downstream effects and effects on the adverse outcome (AO) based on measurements of an early key event. Predictions of cytotoxicity from the mathematical rela-tionships showed good concordance with measured cytotoxicity after treatment with colistin and polymyxin b nonapeptide. The work also revealed uncertainties and limitations of the ap-plied strategy, which have a significant impact on the prediction and on a risk assessment based on in vitro results.},
  language  = {en}
}
@phdthesis{Junold2014,
  author    = {Junold, Konstantin},
  title     = {Synthese, Struktur und Eigenschaften neuer h{\"o}herkoordinierter Silicium(II)- und Silicium(IV)-Komplexe},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-104848},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2014},
  abstract  = {Die vorliegende Arbeit stellt einen Beitrag zur Chemie des h{\"o}herkoordinierten Siliciums dar. Im Vordergrund standen die Synthese und Charakterisierung neuer neutraler penta- und hexakoordinierter Silicium(IV)-Komplexe sowie die Synthese, Charakterisierung und Untersuchung der Reaktivit{\"a}t eines neuartigen Donor-stabilisierten Silylens.},
  subject      = {Siliciumkomplexe},
  language  = {de}
}
@phdthesis{Kaiser2014,
  author    = {Kaiser, Conrad},
  title     = {Donor-Bridge-Acceptor Systems with Varying Bridge Units for the Investigation of Intramolecular and Intermolecular Electron Transfer Processes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-97614},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2014},
  abstract  = {Within this study, the influence of the energetics of the bridge unit on electron transfer (ET) in an electrode-bridge-donor system was investigated in a monolayer environment. This was realized by specifically designing molecules containing ferrocene carboxylic ester donors and hydroquinone derivatives as bridge units and by using a gold electrode as acceptor. The energetics of the hydroquinone derivatives was adjusted by synthetically varying its substituents with the intention of changing the ET speed and mechanisms. Thereby the choice of the substituents was based on the literature known half-wave potentials of similar solvated hydroquinone derivatives and successively confirming them by conducting cyclic voltammetry on the actual bridge units synthesized. Then, a synthetic pathway, which accommodated the limited stability of the integrated terminal ferrocene carbon acid ester, was developed and successfully employed. This was followed by developing a procedure for preparing very dense and highly ordered monolayers from the target molecules on self-made gold microelectrodes. For the electrochemical investigations, several electrolyte solutions were tested until one, which ensured low susceptibility of the characterization setup towards slight changes of the electrode arrangement and measurement parameters while ensuring sufficient stability of the monolayers, was found. Furthermore, a new, commercially available potentiostat was established for the impedance measurements, which reduced the stress on the monolayers during the electrochemical characterizations in comparison to the equipment used in many former studies. Regarding the determination of the ET rates, the data analysis protocol for the impedance measurements developed by Creager et al. was slightly adapted to allow analysis of the investigated monolayers despite their non-ideal behavior. In addition, the influence of changes to the electrical parameters of the impedance scans was investigated to minimize the error in the acquired data. The electrochemical analysis of the monolayers by conducting cyclic voltammetry on MA, MB and MC prepared from A, B and C confirmed the accomplishment of near ideal surface coverage and exceptionally high order. The surface coverages of MB and MC were, probably due to the space filled by the substituents on their bridge units, slightly lower than those of MA. Furthermore, the shape of the redox waves of the ferrocene carboxylic acid redox center in the voltammogram of MA showed a broadening and a shift towards higher potentials, which was assigned to electrostatic interference of oxidized terminal redox centers due to the especially dense packing. However, in the voltammogram of MB, no sharp redox waves of the bridge units, as predicted by the analysis of preliminary monolayers of the same type with low surface coverage, were present. This was attributed to the different and varying microenvironment of the bridge units deeply embedded within high-density monolayers. In detail, the different degree of shielding of each individual bridge unit from counter ions and solvent molecules probably resulted in the half wave potential being shifted to varying higher potentials, thus preventing the formation of sharp redox waves. In addition, electrostatic effects of oxidized bridge units could have enhanced this effect. This leads to the conclusion that the half-wave potentials of fully solvated bridge units determined by the cyclic voltammetry are not suited to predict the energetics of the oxidized bridge states embedded within the prepared high density monolayers. Finally, the monolayers were successfully analyzed by impedance spectroscopy, which showed that the ET rate of MA is slightly higher than that of MB, and both are higher than that of MC. All of the values were, according to literature, in the expected region considering the length and degree of conjugation of the backbone. However, this picture is relativized when considering the targeted energetic alignment of the bridge units. According to the predicted very small energy gap between the oxidized states of the donor and the bridge unit in MB, a domination of the hopping mechanism should have led to a several orders of magnitude higher ET rate than in MA and MC. That this was not the case was attributed to the underestimation of the energy of the oxidized bridge states by utilizing cyclic voltammetry of the fully solvated bridge units (see above). According to the small differences of the ET rates the superexchange process was assumed to be the dominating mechanism not only in MA and MC but also in MB. However, even when shifted, the predicted energetic order of the oxidized bridge states should have led to a moderately decreasing ET rate from MB over MA to MC. The reason for the actual ET rate in MA being slightly higher than in MB might be found in the electrostatic interference of the terminal redox centers in MA (see above). In conclusion, the targeted model systems were prepared and the ET rates were successfully determined. However, the problems concerning the relative energetic positioning of the involved states within the dense monolayers prevented the specific alteration of the speed and mechanism of the ET. The reason for this can be probably found in the high density and order of the monolayers prepared within this work, which hamper the intrusion of the components of the electrolyte solutions. This various degree of stabilization for the individual bridge units by counter ions and solvent molecules leads to the energy of the oxidized bridge states being splitted and shifted towards higher potentials with respect to fully solvated bridge units. This effect might be further enhanced by electrostatics of neighboring already oxidized bridge states. All this makes the predetermination of the energetics of the embedded bridge units extremely difficult. On one hand, this behavior can be considered an obstacle and could probably be circumvented by designing molecules with bulky anchor groups and rigid molecular backbones, which would ensure perpendicular arrangement to the surface and full exposure of the bridge and terminal redox centers to the solvent molecules and counter ions. On the other hand, monolayers which completely embed integral redox centers might open up the opportunity to study the effects of microenvironments similar to those in solid state materials. Regarding mixed valence compounds, the present study focuses on bistriarylamine radical cation F∙+, which contains the [3.3]paracyclophane bridge unit. The results were compared to the, except for the bridge units, identical literature known compounds G∙+ and N∙+ with [2.2]paracyclophane and p-xylene bridges respectively. This led to the conclusion that slightly different bridge units can induce substantial changes to the internal reorganization energy. This is especially noteworthy since it is usually believed that structural adaption limited to the redox centers taking part in the charge transfer dominates the internal reorganization energy. Furthermore, the application of the two-state Mulliken-Hush approach shows that compounds F∙+ and G∙+ have near identical couplings and similar thermal barriers. Confirmation of the latter finding as well as near identical thermal electron transfer rates for both compounds were provided via a cooperation project by Grampp et al. in which these values were directly extracted from temperature dependent electron paramagnetic resonance measurements. These results are quite unexpected since the "through-space" distances of the stacked pi-systems in the paracyclophane bridges differ significantly. They are well within the sum of the van der Waals radii in G∙+ and barely within them in compound F∙+. In addition, these findings weaken the common assumption of the ethylene bridges in G∙+ substantially adding to the electronic coupling, since then, in F∙+, due to its propylene linkers, the coupling should be substantially reduced. Finally, relying on the fact that the electronic couplings are only three times higher and the thermal electron transfer rates are only one order of magnitude higher for N∙+ than for compounds F∙+ and G∙+ shows that intermolecular electron transfer in solid state materials can remain efficient, if the interacting pi-systems stay within the sum of van der Waals radii of their carbons. Concerning the donor-acceptor dyads, the current investigation centers on triarylamine-cyclophane-naphtalene diimide (TAA-CP-NDI) compounds which display almost complete photoinduced charge separation. Furthermore, their singlet charge separated states show lifetimes of hundreds of nanoseconds, which is rarely found in such simple dyads. In the present case they can be attributed to the particular amount of electronic coupling V (on the order of 100 cm^-1), which is brought about by incorporation of the smallest model systems for pi-stacks, the CPs, together with the nodes on the NDI lowest unoccupied molecular orbital, which electronically decouples the central NDI from its nitrogen substituents. In agreement with studies of [2.2]- and [3.3]paracyclophane bridged mixed valence compounds (see above), the cycolphane bridged dyads show very similar electronic coupling when dealing with ground state processes like charge recombination. However, when investigating excited state processes, like charge separation in the TAA-CP-NDI dyads, one has to bear in mind that the CP orbitals are involved in the formation of intermediate states that likely possess charge transfer character. In this case, the [2.2]paracyclophane bridge obviously induces a stronger coupling than the [3.3]paracyclophane. Another interesting property of the dyads studied here is the substantial population of the triplet charge separated (CS) state of ca. one third regarding both CS states, which is brought about by singlet-triplet interconversion from the singlet CS state. Thus, the triplet CS state with a lifetime of several microseconds acts as a kind of buffer for the CS state before recombining to the ground state and, thus, leads to distinctly prolonged overall lifetimes of the charge separated states. Thus it can be concluded that the intersystem crossing and charge recombination (CR) processes of the CS states are governed by a delicate balance of a large electronic coupling V and a large exchange interaction 2J (both with regard to systems containing a through-space pathway). The latter appears to be induced by second order interaction with a local triplet state lying close in energy to the CS state. This balance results in slow CR- and singlet-triplet- interconversion rates, which differ only by one order of magnitude. Compared to the many NDI containing dyads studied so far, these features of the dyads studied here are, to the best of our knowledge, unique. Especially the combination of high quantum yield of charge separation, long lifetimes and high energy of the charge separated state make the investigated systems interesting for practical applications. Furthermore, the presented unraveling of the underlying mechanisms is of substantial value for the future design of dyads for practical applications regarding the implementation and adjustment of these favorable properties.},
  subject      = {Elektronentransfer},
  language  = {en}
}
@phdthesis{Kuhlmann2015,
  author    = {Kuhlmann, Matthias},
  title     = {Sulfur-functional polymers for biomedical applications},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-119832},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2015},
  abstract  = {Aim of this thesis was to combine the versatility of sulfur-chemistry, regarding redox-sensitivity as well as chemo- and site-specific conjugation, with multifunctionality of poly(glycidol)s as an alternative to poly(ethylene glycol). First the homo- and copolymerizations of EEGE and AGE were performed with respect to molar-mass distribution and reaction kinetics. A detailed study was given, varying the polymerization parameters such as DP, counter ion, solvent and monomer influence. It can be concluded that in general the rates for all polymerizations are higher using K+, in contrast to Cs+, as counter ion for the active alkoxide species. Unfortunately, K+ as counter ion commonly leads to a reduced control over polymer dispersity. In this thesis it was shown that the broad molar-mass distributions might be reduced by adding the monomer in a step-wise manner. In experiments with a syringe pump, for continuously adding the monomer, a significant reduction of the dispersities could be found using K+ as counter ion. In analogy to the oxyanionic polymerization of epoxides, the polymerization of episulfides via a thioanionic mechanism with various DPs was successful with thiols/DBU as initiator. In most experiments bimodality could be observed due to the dimerization, caused by oxidation processes by introduced oxygen during synthesis. Reducing this was successful by modifying the degassing procedure, e.g. repeated degassing cycles after each step, i.e. initiation, monomer addition and quenching. Unfortunately, it was not always possible to completely avoid the dimerization due to oxidation. Thiophenol, butanethiol, mercaptoethanol and dithiothreitol were used as thiol initiators, all being capable to initiate the polymerization. With the prediction and the narrow molar-mass distributions, the living character of the polymerization is therefore indicated. Homo- and copolymers of poly(glycidol) were used to functionalize these polymers with side-chains bearing amines, thiols, carboxylic acids and cysteines. The cysteine side-chains were obtained using a newly synthesized thiol-functional thiazolidine. For this, cysteine was protected using a condensation reaction with acetone yielding a dimethyl-substituted thiazolidine. Protection of the ring-amine was obtained via a mixed-anhydride route using formic acid and acetic anhydride. The carboxylic acid of 2,2-dimethylthiazolidine-4-carboxylic acid was activated with CDI and cysteamine attached. The obtained crystalline mercaptothiazolidine was subjected to thiol-ene click chemistry with allyl-functional poly(glycidol). A systematic comparison of thermal- versus photo-initiation showed a much higher yield and reaction rate for the UV-light mediated thiol-ene synthesis with DMPA as photo-initiator. Hydrolysis of the protected thiazolidine-functionalities was obtained upon heating the samples for 5 d at 70 °C in 0.1 M HCl. Dialysis against acetic acid lead to cysteine-functional poly(glycidol)s, storable as the acetate salt even under non-inert atmosphere. An oxidative TNBSA assay was developed to quantify the cysteine-content without the influence of the thiol-functionality. A cooperation partner coupled C-terminal thioester peptides with the cysteine-functional poly(glycidol)s and showed the good accessibility and reactivity of the cysteines along the backbone. SDS-PAGE, HPLC and MALDI-ToF measurements confirmed the successful coupling.},
  subject      = {Polymer},
  language  = {en}
}
@phdthesis{Lang2021,
  author    = {Lang, Katharina},
  title     = {Synthese leitf{\"a}higer elastischer Materialkomposite durch Verwendung metallischer Nanodr{\"a}hte},
  doi       = {10.25972/OPUS-24825},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-248253},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2021},
  abstract  = {Silbernanodr{\"a}hte (AgNW) wurden in verschiedene Hybridpolymere und in eine als Referenz dienende Silikonzusammensetzung eingebaut. Durch Spincoating konnten transparente leitf{\"a}hige Filme erhalten werden. Deren jeweilige Nanodrahtverteilung, thermische Aktivierung und visuelle Transparenz wurden charakterisiert. Die Perkolationsschwelle der Filme h{\"a}ngt dabei von der individuellen durchschnittlichen AgNW-L{\"a}nge ab. Eine betr{\"a}chtliche Leitf{\"a}higkeit wurde w{\"a}hrend des mechanischen Streckens bis zu 30 \% aufrechterhalten. Mikrostrukturierte Hybridpolymer-Verbundfilme wurden durch UV-Lithographie erhalten. ...},
  subject      = {Verbundwerkstoff},
  language  = {de}
}
@phdthesis{Laskowski2014,
  author    = {Laskowski, Nadine},
  title     = {Synthese und Charakterisierung neuartiger siliciumhaltiger Synthesebausteine},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-107481},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2014},
  abstract  = {Die vorliegende Arbeit beschreibt die Synthese von linearen und verzweigten funktionalisierten siliciumhaltigen Synthesebausteinen unter Verwendung der 2,4,6-Trimethoxyphenyl-Schutzgruppe sowie die Synthese cyclischer siliciumhaltiger Synthese-bausteine unter Verwendung eines Donor-stabilisierten Silylens. Diese Forschungsarbeit leistet daher sowohl einen Beitrag zur Schutzgruppenchemie des Siliciums als auch zur Chemie des nieder- bzw. h{\"o}hervalenten Siliciums. Alle Zielverbindungen sowie die entsprechenden isolierten Vorstufen wurden durch NMR-Spektroskopie in L{\"o}sung (1H-, 13C- und 29Si-NMR) und Elementaranalysen (C, H, N; außer 15 und 16) charakterisiert. Die Verbindungen 34, 36, 41, 42, 45, 48, 52, 54 und 55 wurden zus{\"a}tzlich durch NMR-Spektroskopie im Festk{\"o}rper (13C-, 15N- und 29Si-VACP/MAS-NMR) untersucht, und die Verbindungen 1-6, 9, 18, 25, 29, 34, 36, 41, 42, 45, 48, 52, 54 und 55 wurden außerdem durch Einkristall-R{\"o}ntgenstrukturanalyse charakterisiert.},
  subject      = {Silicium},
  language  = {de}
}
@phdthesis{Laug2014,
  author    = {Laug, Roderich},
  title     = {Funktionsaufkl{\"a}rung von CYR61 und CTGF in mesenchymalen Stammzellen und Lungenendothelzellen},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-98711},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2014},
  abstract  = {Cystein rich protein 61 (CYR61/CCN1) und Connective tissue growth factor (CTGF/CCN2) stellen aufgrund ihrer Multifunktionalit{\"a}t zwei sehr interessante Vertreter aus der derzeit sechs Mitglieder umfassenden Familie der CCN-Proteine (CCN- CYR61/CCN1, CTGF/CCN2, NOV/CCN3, WISP1-3/CCN4-6) dar. Seit der Entdeckung von CYR61 und CTGF konnten die {\"u}berlappenden, aber meist nicht redundanten zellspezifischen Effekte in verschiedenen Zellsystemen nachgewiesen werden. Die Einfl{\"u}sse auf zahlreiche Prozesse wie Proliferation und Migration, aber auch Angiogenese und das {\"U}berleben von Zellen lassen eine weitreichende Bedeutung im Zusammenhang mit vielen Entwicklungsprozessen vermuten, so auch der des muskuloskelettalen Systems und der Entwicklung der Lunge. In der vorliegenden Arbeit wurden f{\"u}r die n{\"a}here Charakterisierung von CYR61 und CTGF humane mesenchymale Stammzellen (hMSC) und die humane prim{\"a}re Lungenendothelzelllinie HPMEC-ST1.6R (human pulmonary microvascular endothelial cells) gew{\"a}hlt. Beide Zellsysteme sind f{\"u}r die Untersuchung der Funktionsf{\"a}higkeit in den verschiedenen Kompartimenten bestens geeignet. So ist die Zelllinie HPMEC-ST1.6R den prim{\"a}ren Endothelzellen, im Vergleich mit anderen in der Forschung eingesetzten Zelllinien, in Bezug auf spezifische Oberfl{\"a}chenmarker am n{\"a}chsten. Mesenchymale Stammzellen bilden als multipotente Zellen das R{\"u}ckrat des muskuloskelettalen Systems und sind an der Hom{\"o}ostase des menschlichen St{\"u}tz- und Bewegungsapparates maßgeblich beteiligt. Um experimentell nutzbare Konzentrationen an rekombinanten Proteinen zu erhalten, wurde ein Baculovirus-Expressionsystems gew{\"a}hlt. Nach der erfolgreichen Klonierung der CTGF/Fc-Tag Sequenz in einen Expressionsvektor konnte dies auch durch Produktion in SF21-Insektenzellen erreicht und erstmalig rekombinantes CTGF/Fc von hoher Reinheit gewonnen werden. Allerdings konnte eine best{\"a}ndige Funktionsf{\"a}higkeit der aufgereinigten Proteine mittels eines Proliferationstestes nachfolgend nur bedingt best{\"a}tigt werden. F{\"u}r die weitere Versuchsplanung, einer Untersuchung der Auswirkung von rekombinantem CTGF (rCTGF) bzw. CYR61 (rCYR61) auf die Zielzellen, musste zun{\"a}chst die zelleigene ctgf bzw. cyr61 Expression herunterreguliert werden, um einen endogenen St{\"o}reffekt auszuschließen. Durch den Einsatz spezifischer shRNAs konnte ctgf/CTGF sowohl in den hMSC-, wie auch den HPMEC-ST1.6R-Zielzellen deutlich herunterreguliert und nachfolgend eine markant reduzierte Proliferation beobachtet werden. Ein Effekt f{\"u}r die Regulation von cyr61 blieb aus. In dieser Arbeit wurden anschließend erstmals mittels Microarray-Analysen Ver{\"a}nderungen im Genexpressionsmuster der ctgf herunterregulierten hMSC- bzw. Lungenendothelzellen gegen{\"u}ber Kontrollzellen untersucht. Des Weiteren war die Auswirkung einer Behandlung von ctgf herunterregulierten Zielzellen mit rCTGF gegen{\"u}ber unbehandelten Kontrollzellen von Interesse. F{\"u}r beide Zellsysteme konnten signifikante Genregulationen nach der Behandlung mit CTGF spezifischen shRNAs gegen{\"u}ber den Kontrollzellen detektiert werden, mit interessanten Genclustern im Bereich der TGF-beta (transforming growth factor ß) Signalgebung, sowie der fokalen Adh{\"a}sion (z.B. VEGF). Eine Behandlung mit rCTGF hingegen zeigte gegen{\"u}ber den unbehandelten Kontrollzellen in der Auswertung der Microarray-Analyse keine signifikante Ver{\"a}nderung im Genexpressionsmuster. In dieser Arbeit wurden, neben einer effektiven Gewinnung von rekombinantem CTGF und der Herunterregulation der endogenen ctgf Expression, wichtige Erkenntnisse zur Biologie von CTGF (und CYR61) in mesenchymalen Stammzellen hMSC und der Lungenendothelzelllinie HPMEC-ST1.6R erlangt. Die erhaltenen Microarray-Daten bieten eine fundierte Grundlage f{\"u}r zahlreiche fortf{\"u}hrende Untersuchungen.},
  subject      = {Connective Tissue Growth Factor},
  language  = {de}
}
@article{LehmannBaumannLambovetal.2021,
  author    = {Lehmann, Matthias and Baumann, Maximilian and Lambov, Martin and Eremin, Alexey},
  title     = {Parallel polar dimers in the columnar self-assembly of umbrella-shaped subphthalocyanine mesogens},
  series = {Advanced Functional Materials},
  volume    = {31},
  journal   = {Advanced Functional Materials},
  number    = {38},
  doi       = {10.1002/adfm.202104217},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-256343},
  year      = {2021},
  abstract  = {The self-assembly of umbrella-shaped mesogens is explored with subphthalocyanine cores and oligo(thienyl) arms with different lengths in the light of their application as light-harvesting and photoconducting materials. While the shortest arm derivatives self-assemble in a conventional columnar phase with a single mesogen as a repeating unit, the more extended derivatives generate dimers that pile up into liquid crystalline columns. In contrast to the antiparallel arrangement known from single crystals, the present mesogens align as parallel dimers in polar columnar phases as confirmed by X-ray scattering, experimental densities, dielectric spectroscopy, second harmonic generation, alignment, and conductivity studies. UV-vis and fluorescence spectroscopies reveal a broad absorption in the visible range and only weak emission of the Q-band. Thus, these light-collecting molecules forming strongly polar columnar mesophases are attractive for application in the area of photoconductive materials.},
  language  = {en}
}
@phdthesis{Macher2021,
  author    = {Macher, Sven},
  title     = {On the Effects of Moisture on Polymer-Based Electrochromic Devices},
  doi       = {10.25972/OPUS-24240},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-242407},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2021},
  abstract  = {The present work builds on a conjugated electrochromic polymer with a highly transmissive and colorless bright state and its application in electrochromic devices. The main body of this work focuses on the investigation of the influence of moisture on electrochromic devices and solutions to overcome possible degradation of these devices due to moisture ingress. Firstly, a series of EDOT derivatives with a terminal double bond in the lateral sidechain to potentially achieve a highly transmissive and fully colorless bright state was investigated. All of the EDOT derivatives were electrochemically polymerized and characterized by means of (in-situ) spectroelectrochemistry. The results highlight the dramatic influence of the terminal double bond on the improved visible light transmittance and color neutrality in the bright state. After detailed evaluation and comparison, the best performing compound, which contains a hexenyl sidechain (PEDOT-EthC6), was scaled-up by changing the deposition technique from an electrochemical to a chemical in-situ polymerization process on a R2R-pilot line in an industrially relevant environment. The R2R-processed PEDOTEthC6 half-cells were characterized in detail and provide enhanced electrochromic properties in terms of visible light transmittance and color neutrality in the bright state as well as short response times, improved contrast ratio, coloration efficiency and cycling stability (10 000 cycles).[21] In a second step, the novel PEDOT-EthC6 electrochromic polymer was combined with a Prussian Blue counter electrode and a solid polymer electrolyte to form an all-solid-sate ECDs based on complementary switching electrodes and PET-ITO as flexible substrates. The fabricated ECDs were optically and spectroelectrochemically characterized. Excellent functionality of the S2S-processed flexible ECDs was maintained throughout 10 000 switching cycles under laboratory conditions. The ECDs offer enhanced electrochromic properties in terms of visible light transmittance change and color neutrality in the bright state as well as contrast ratio, coloration efficiency, cycling stability and fast response times. Furthermore, the final device assembly was transferred from a S2S-process to a continuous R2R-lamination process.[238] In a third step, the PEDOT-EthC6/PB-based ECDs were submitted to conscious environmental aging tests. The emphasis of the research presented in this work, was mainly put at the influence of moisture and possible failure mechanisms regarding the PEDOT-EthC6/PB based ECDs. An intense brown coloration of the electrodes was observed while cycling the ECDs in humid atmospheres (90\% rH) as a major degradation phenomenon. The brown coloration and a thereby accompanied loss of conductivity of the PET-ITO substrates was related to significant degradation of the ITO layers, inserted as the conductive layers in the flexible ECDs. A dissolution of the ITO thin films and formation of metallic indium particles on the surface of the ITO layers was observed that harmed the cycling stability enormously. The conductive layers of the aged ECDs were investigated by XRD, UV-Vis, SEM and spectroelectrochemical measurements and validated the supposed irreversible reduction of the ITO layers.[279] In the absence of reasonable alternatives to PET-ITO for flexible (R2R-processed) ECDs, it is also important to investigate measures to avoid the degradation of ECDs. This is primarily associated with the avoidance of appropriate electrode potentials necessary for ITO reduction in humid atmospheres. As an intrinsic action point, the electrode potentials were investigated via electrochemical measurements in a three-electrode setup of an all-solid-state ECD. Extensive knowledge on the electrode potentials allowed the voltage-induced degradation of the ITO in flexible ECDs to be avoided through the implementation of an unbalanced electrode configuration (charge density ratio of working and counter electrode). It was possible to narrow the overall operational voltage window to an extent in which irreversible ITO reduction no longer occurs. The unbalanced electrode configuration lead to an improved cycling stability without harming other characteristics such as response time and light transmittance change and allows ECD operation in the presence of humidity.[279] The avoidance of the mentioned degradation phenomena is further associated with appropriate sealing methods and materials as well as appropriate electrode and device fabrication processes. Since a variety of sealing materials is commercially available, due to the commercial launch of organic photovoltaic (OPV) and light emitting diodes (OLEDs), the focus in the present work was put to water-free electrode fabrication. As an extrinsic action point, a novel preparation method of a nanoscale PEDOT-EthC6 dispersion based on organic solvents is presented here in a final step. The water-free processing method gives access to straightforward printing and coating processes on flexible PET-ITO substrates and thus represents a promising and simplified alternative to the established PEDOT:PSS. The resulting nano-PEDOT-EthC6 thin films exhibit enhanced color neutrality and transmissivity in the bright state and are comparable to the properties of the in-situ polymerized PEDOT-EthC6 thin films.[280]},
  subject      = {Elektrochromie},
  language  = {en}
}
@phdthesis{Meininger2022,
  author    = {Meininger, Markus},
  title     = {Calcium hydroxide as antibacterial implant coating},
  doi       = {10.25972/OPUS-26112},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-261122},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2022},
  abstract  = {In modern medicine hip and knee joint replacement are common surgical procedures. However, about 11 \% of hip implants and about 7 \% of knee implants need re-operations. The comparison of implant registers revealed two major indications for re-operations: aseptic loosening and implant infections, that both severely impact the patients' health and are an economic burden for the health care system. To address these problems, a calcium hydroxide coating on titanium was investigated in this thesis. Calcium hydroxide is a well-known antibacterial agent and used with success in dentistry. The coatings were applied with electrochemically assisted deposition, a versatile tool that combines easiness of process with the ability to coat complex geometries homogeneously. The pH-gradient during coating was investigated and showed the surface confinement of the coating process. Surface pre-treatment altered the surface morphology and chemistry of the titanium substrates and was shown to affect the morphology of the calcium hydroxide coatings. The influence of the coating parameters stirring speed and current pulsing were examined in various configurations and combinations and could also affect the surface morphology. A change in surface morphology results in a changed adhesion and behavior of cells and bacteria. Thus, the parameters surface pre-treatment, stirring speed and current pulsing presented a toolset for tailoring cellular response and antibacterial properties. Microbiological tests with S. aureus and S. epidermidis were performed to test the time-dependent antibacterial activity of the calcium hydroxide coatings. A reduction of both strains could be achieved for 13 h, which makes calcium hydroxide a promising antibacterial coating. To give insight into biofilm growth, a protocol for biofilm staining was investigated on titanium disks with S. aureus and S. epidermidis. Biofilm growth could be detected after 5 days of bacterial incubation, which was much earlier than the 3 weeks that are currently assumed in medical treatment. Thus, it should be considered to treat infections as if a biofilm were present from day 5 on. The ephemeral antibacterial properties of calcium hydroxide were further enhanced and prolonged with the addition of silver and copper ions. Both ionic modifications significantly enhanced the bactericidal potential. The copper modification showed higher antibacterial effects than the silver modification and had a higher cytocompatibility which was comparable to the pure calcium hydroxide coating. Thus, copper ions are an auspicious option to enhance the antibacterial properties. Calcium hydroxide coatings presented in this thesis have promising antibacterial properties and can easily be applied to complex geometries, thus they are a step in fighting aseptic loosening and implant infections.},
  subject      = {Calciumhydroxid},
  language  = {en}
}
@phdthesis{Pinzner2021,
  author    = {Pinzner, Florian},
  title     = {Vicinal and Double Chemoselective Biofunctionalization of Polyoxazolines},
  doi       = {10.25972/OPUS-22975},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-229758},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2021},
  abstract  = {In this work, a toolbox was provided to create three-component polymer conjugates with a defined architecture, designed to bear different biocomponents that can interact with larger biological systems in biomacromolecular recognition experiments. The target architecture is the attachment of two biomolecule 'arms' to the alpha telechelic end point of a polymer and fixating the conjugate to the gold surface of SAW and SPR sensor chips with the polymer's other omega chain end. This specific design of a conjugate will be implemented by using a strategy to yield novel double alpha as well as omega telechelic functionalized POx and the success of all cascade reaction steps leading to the final conjugation product will be proven through affinity measurements between covalently bound mannose and ConA. All reactions were performed on a low molecular model level first and then transferred to telechelic and also side chain functionalized polymer systems.},
  subject      = {Polyoxazoline},
  language  = {en}
}
@phdthesis{Ramirez2024,
  author    = {Ramirez, Yesid A.},
  title     = {Structural basis of ubiquitin recognition and rational design of novel covalent inhibitors targeting Cdu1 from \(Chlamydia\) \(Trachomatis\)},
  doi       = {10.25972/OPUS-19168},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-191683},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2024},
  abstract  = {The WHO-designated neglected-disease pathogen Chlamydia trachomatis (CT) is a gram-negative bacterium responsible for the most frequently diagnosed sexually transmitted infection worldwide. CT infections can lead to infertility, blindness and reactive arthritis, among others. CT acts as an infectious agent by its ability to evade the immune response of its host, which includes the impairment of the NF-κB mediated inflammatory response and the Mcl1 pro-apoptotic pathway through its deubiquitylating, deneddylating and transacetylating enzyme ChlaDUB1 (Cdu1). Expression of Cdu1 is also connected to host cell Golgi apparatus fragmentation, a key process in CT infections. Cdu1 may this be an attractive drug target for the treatment of CT infections. However, a lead molecule for the development of novel potent inhibitors has been unknown so far. Sequence alignments and phylogenetic searches allocate Cdu1 in the CE clan of cysteine proteases. The adenovirus protease (adenain) also belongs to this clan and shares a high degree of structural similarity with Cdu1. Taking advantage of topological similarities between the active sites of Cdu1 and adenain, a target-hopping approach on a focused set of adenain inhibitors, developed at Novartis, has been pursued. The thereby identified cyano-pyrimidines represent the first active-site directed covalent reversible inhibitors for Cdu1. High-resolution crystal structures of Cdu1 in complex with the covalently bound cyano-pyrimidines as well as with its substrate ubiquitin have been elucidated. The structural data of this thesis, combined with enzymatic assays and covalent docking studies, provide valuable insights into Cdu1s activity, substrate recognition, active site pocket flexibility and potential hotspots for ligand interaction. Structure-informed drug design permitted the optimization of this cyano-pyrimidine based scaffold towards HJR108, the first molecule of its kind specifically designed to disrupt the function of Cdu1. The structures of potentially more potent and selective Cdu1 inhibitors are herein proposed. This thesis provides important insights towards our understanding of the structural basis of ubiquitin recognition by Cdu1, and the basis to design highly specific Cdu1 covalent inhibitors.},
  subject      = {Ubiquitin},
  language  = {en}
}