@phdthesis{Lichter2023,
  author    = {Lichter, Katharina},
  title     = {Die Ultrastruktur von Aktiven Zonen in hippocampalen Moosfaserboutons},
  doi       = {10.25972/OPUS-30312},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-303126},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2023},
  abstract  = {In nervous systems, synapses precisely orchestrate information transfer and memory formation. Active zones (AZ) are specialized subcellular compartments at the presynaptic mesoscale which process synaptic transmission on an ultrastructural level. The AZ cytomatrix including the essential scaffold protein Rab3 interacting molecule (RIM) enables exocytosis of synaptic vesicles. A deficiency of the locally most abundant protein isoform RIM1α diminishes long-term potentiation in a complex central mammalian synapse - the connection of hippocampal mossy fiber boutons (MFB) to cornu ammonis (CA)3 pyramidal neurons. Behaviourally, these mice present with learning impairment. The present MD thesis addresses the so far unknown three-dimensional (3D) AZ ultrastructure of MFBs in acute hippocampal slices of wild-type and RIM1α-/- mice. In a first set of experiments, a standardized protocol for near-to-native synaptic tissue preparation at MFBs using high-pressure freezing and freeze substitution and 3D modelling using electron tomography was developed and established. Based on the excellent preservation of synaptic tissue using this protocol, the AZ ultrastructure in both genotypes was quantified in detail up to an individual docked synaptic vesicle using custom-written programming scripts. The experiments demonstrate that deficiency of RIM1α leads to multidimensional alter-ation of AZ 3D ultrastructure and synaptic vesicle pools in MFBs. (Tightly) docked synaptic vesicles - ultrastructural correlates of the readily releasable pool - are reduced, decentralized, and structurally modified, whereas the more distant vesicle pool clusters more densely above larger and more heterogenous AZ surfaces with higher synaptic clefts. The present thesis contributes to a more comprehensive understanding regarding the role of RIM1α for (tight) vesicle docking and organization at MFBs. Furthermore, the precise 3D ultrastructural analysis of MFB AZs in this thesis provides the necessary mor-phological basis for further studies to correlate synaptic ultrastructure with presynaptic plasticity and memory dysfunction in RIM1α-/- mice using advanced electrophysiological and behavioral techniques.},
  subject      = {Hippocampus},
  language  = {de}
}
@article{MrestaniLichterSirenetal.2023,
  author    = {Mrestani, Achmed and Lichter, Katharina and Sir{\´e}n, Anna-Leena and Heckmann, Manfred and Paul, Mila M. and Pauli, Martin},
  title     = {Single-molecule localization microscopy of presynaptic active zones in Drosophila melanogaster after rapid cryofixation},
  series = {International Journal of Molecular Sciences},
  volume    = {24},
  journal   = {International Journal of Molecular Sciences},
  number    = {3},
  issn      = {1422-0067},
  doi       = {10.3390/ijms24032128},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-304904},
  year      = {2023},
  abstract  = {Single-molecule localization microscopy (SMLM) greatly advances structural studies of diverse biological tissues. For example, presynaptic active zone (AZ) nanotopology is resolved in increasing detail. Immunofluorescence imaging of AZ proteins usually relies on epitope preservation using aldehyde-based immunocompetent fixation. Cryofixation techniques, such as high-pressure freezing (HPF) and freeze substitution (FS), are widely used for ultrastructural studies of presynaptic architecture in electron microscopy (EM). HPF/FS demonstrated nearer-to-native preservation of AZ ultrastructure, e.g., by facilitating single filamentous structures. Here, we present a protocol combining the advantages of HPF/FS and direct stochastic optical reconstruction microscopy (dSTORM) to quantify nanotopology of the AZ scaffold protein Bruchpilot (Brp) at neuromuscular junctions (NMJs) of Drosophila melanogaster. Using this standardized model, we tested for preservation of Brp clusters in different FS protocols compared to classical aldehyde fixation. In HPF/FS samples, presynaptic boutons were structurally well preserved with ~22\% smaller Brp clusters that allowed quantification of subcluster topology. In summary, we established a standardized near-to-native preparation and immunohistochemistry protocol for SMLM analyses of AZ protein clusters in a defined model synapse. Our protocol could be adapted to study protein arrangements at single-molecule resolution in other intact tissue preparations.},
  language  = {en}
}
@article{LichterPaulPaulietal.2022,
  author    = {Lichter, Katharina and Paul, Mila Marie and Pauli, Martin and Schoch, Susanne and Kollmannsberger, Philip and Stigloher, Christian and Heckmann, Manfred and Sir{\´e}n, Anna-Leena},
  title     = {Ultrastructural analysis of wild-type and RIM1α knockout active zones in a large cortical synapse},
  series = {Cell Reports},
  volume    = {40},
  journal   = {Cell Reports},
  number    = {12},
  doi       = {10.1016/j.celrep.2022.111382},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-300913},
  year      = {2022},
  abstract  = {Rab3A-interacting molecule (RIM) is crucial for fast Ca\(^{2+}\)-triggered synaptic vesicle (SV) release in presynaptic active zones (AZs). We investigated hippocampal giant mossy fiber bouton (MFB) AZ architecture in 3D using electron tomography of rapid cryo-immobilized acute brain slices in RIM1α\(^{-/-}\) and wild-type mice. In RIM1α\(^{-/-}\), AZs are larger with increased synaptic cleft widths and a 3-fold reduced number of tightly docked SVs (0-2 nm). The distance of tightly docked SVs to the AZ center is increased from 110 to 195 nm, and the width of their electron-dense material between outer SV membrane and AZ membrane is reduced. Furthermore, the SV pool in RIM1α\(^{-/-}\) is more heterogeneous. Thus, RIM1α, besides its role in tight SV docking, is crucial for synaptic architecture and vesicle pool organization in MFBs.},
  language  = {en}
}