@phdthesis{Ziegenhals2018, author = {Ziegenhals, Thomas}, title = {The role of the miR-26 family in neurogenesis}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-156395}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {For the differentiation of a embryonic stem cells (ESCs) to neuronal cells (NCs) a complex and coordinated gene regulation program is needed. One important control element for neuronal differentiation is the repressor element 1 silencing transcription factor (REST) complex, which represses neuronal gene expression in non-neuronal cells. Crucial effector proteins of the REST complex are small phosphatases such as the CTDSPs (C-terminal domain small phosphatases) that regulate polymerase II activity by dephosphorylating the C-terminal domain of the polymerase, thereby repressing target genes. The stepwise inactivation of REST, including the CTDSPs, leads to the induction of a neuron-specific gene program, which ultimately induces the formation of neurons. The spatio-temporal control of REST and its effector components is therefore a crucial step for neurogenesis. In zebrafish it was shown that the REST-associated CTDSP2 is negatively regulated by the micro RNA (miR) -26b. Interestingly, the miR-26b is encoded in an intron of the primary transcript of CTDSP2. This gives the fundament of an intrinsic regulatory negative feedback loop, which is essential for the proceeding of neurogenesis. This feedback loop is active during neurogenesis, but inactive in non-neuronal cells. The reason for this is that the maturation of the precursor miR (pre-miR) to the mature miR-26 is arrested in non neuronal cells, but not in neurons. As only mature miRs are actively repressing genes, the regulation of miR-26 processing is an essential step in neurogenesis. In this study, the molecular basis of miR-26 processing regulation in the context of neurogenesis was addressed. The mature miR is processed from two larger precursors: First the primary transcript is cleaved by the enzyme DROSHA in the nucleus to form the pre-miR. The pre-miR is exported from the nucleus and processed further through the enzyme DICER to yield the mature miR. The mature miR can regulate gene expression in association with the RNA-induced silencing complex (RISC). Multiple different scenarios in which miR processing was regulated were proposed and experimentally tested. Microinjection studies using Xenopus leavis oocytes showed that slowdown or blockage of the nucleo-cytoplasmic transport are not the reason for delayed pre-miR-26 processing. Moreover, in vitro and in vivo miR-processing assays showed that maturation is most likely regulated through a in trans acting factor, which blocks processing in non neuronal cells. Through RNA affinity chromatographic assays using zebrafish and murine lysates I was able to isolate and identify proteins that interact specifically with pre-miR-26 and could by this influence its biogenesis. Potential candidates are FMRP/FXR1/2, ZNF346 and Eral1, whose functional characterisation in the context of miR-biogenesis could now be addressed. The second part of my thesis was executed in close colaboration with the laboratory of Prof. Albrecht M{\"u}ller. The principal question was addressed how miR-26 influences neuronal gene expression and which genes are primarily affected. This research question could be addressed by using a cell culture model system, which mimics ex vivo the differentiation of ESCs to NCs via neuronal progenitor. For the functional analysis of miR-26 knock out cell lines were generated by the CRISPR/Cas9 technology. miR-26 deficient ESC keep their pluripotent state and are able to develop NPC, but show major impairment in differentiating to NCs. Through RNA deep sequencing the miR-26 induced transcriptome differences could be analysed. On the level of mRNAs it could be shown, that the expression of neuronal gene is downregulated in miR-26 deficient NCs. Interestingly, the deletion of miR-26 leads to selectively decreased levels of miRs, which on one hand regulate the REST complex and on the other hand are under transcriptional control by REST themself. This data and the discovery that induction of miR-26 leads to enrichment of other REST regulating miRs indicates that miR-26 initiates neurogenesis through stepwise inactivation of the REST complex.}, subject = {miRNS}, language = {en} } @phdthesis{Chen2018, author = {Chen, Jiangtian}, title = {Functions of allatostatin A (AstA) and myoinhibitory peptides (MIPs) in the regulation of food intake and sleep in Drosophila}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-156838}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Neuropeptides and peptide hormones carrying neural or physiological information are intercellular signalling substances. They control most if not all biological processes in vertebrates and invertebrates by acting on specific receptors on the target cell. In mammals, many different neuropeptides and peptide hormones are involved in the regulation of feeding and sleep. In \textit{Drosophila}, allatostatin A (AstA) and myoinhibitory peptides (MIPs) are brain-gut peptides. The AstA receptors are homologues of the mammalian galanin receptors and the amino acid sequences of MIPs are similar to a part of galanin, which has an orexigenic effect and is implicated in the control of sleep behaviour in mammals. I am interested in dissecting pleiotropic functions of AstA and MIPs in the regulation of food intake and sleep in \textit{Drosophila}. \par In the first part of the dissertation the roles of brain-gut peptide allatostatin A are analysed. Due to the genetic and molecular tools available, the fruit fly \textit{Drosophila melanogaster} is chosen to investigate functions of AstA. The aims in this part are to identify pleiotropic functions of AstA and assign specific effects to the activity of certain subsets of AstA expressing cells in \textit{Drosophila} adults. A new and restricted \textit{AstA\textsuperscript{34}-Gal4} line was generated. The confocal imaging result showed that AstA neurons are located in the posterior lateral protocerebrum (PLP), the gnathal ganglia (GNG), the medullae, and thoracic-abdominal ganglion (TAG). AstA producing DLAa neurons in the TAG innervate hindgut and the poterior part of midgut. In addition, AstA are detected in the enteroendocrine cells (EECs).\par Thermogenetic activation and neurogenetic silencing tools with the aid of the \textit{UAS/Gal4} system were employed to manipulate the activity of all or individual subsets of AstA cells and investigate the effects on food intake, locomotor activity and sleep. Our experimental results showed that thermogenetic activation of two pairs of PLP neurons and/or AstA expressing EECs reduced food intake, which can be traced to AstA signalling by using \textit{AstA} mutants. In the locomotor activity, thermogenetic activation of two pairs of PLP neurons and/or AstA expressing EECs resulted in strongly inhibited locomotor activity and promoted sleep without sexual difference, which was most apparent during the morning and evening activity peaks. The experimental and control flies were not impaired in climbing ability. In contrast, conditional silencing of the PLP neurons and/or AstA expressing EECs reduced sleep specifically in the siesta. The arousal experiment was employed to test for the sleep intensity. Thermogenetically activated flies walked significantly slower and a shorter distance than controls for all arousal stimulus intensities. Furthermore, PDF receptor was detected in the PLP neurons and the PLP neurons reacted with an intracellular increase of cAMP upon PDF, only when PDF receptor was present. Constitutive activation of AstA cells by tethered PDF increased sleep and thermogenetic activation of the PDF producing sLNvs promoted sleep specifically in the morning and evening. \par The study shows that the PLP neurons and/or EECs vis AstA signalling subserve an anorexigenic and sleep-regulating function in \textit{Drosophila}. The PLP neurons arborise in the posterior superior protocerebrum, where the sleep relevant dopaminergic neurons are located, and EECs extend themselves to reach the gut lumen. Thus, the PLP neurons are well positioned to regulate sleep and EECs potentially modulate feeding and possibly locomotor activity and sleep during sending the nutritional information from the gut to the brain. The results of imaging, activation of the PDF signalling pathway by tethered PDF and thermoactivation of PDF expressing sLNvs suggest that the PLP neurons are modulated by PDF from sLNv clock neurons and AstA in PLP neurons is the downstream target of the central clock to modulate locomotor activity and sleep. AstA receptors are homologues of galanin receptors and both of them are involved in the regulation of feeding and sleep, which appears to be conserved in evolutionary aspect.\par In the second part of the dissertation, I analysed the role of myoinhibitory peptides. MIPs are brain-gut peptides in insects and polychaeta. Also in \textit{Drosophila}, MIPs are expressed in the CNS and EECs in the gut. Previous studies have demonstrated the functions of MIPs in the regulation of food intake, gut motility and ecdysis in moths and crickets. Yet, the functions of MIPs in the fruit fly are little known. To dissect effects of MIPs regarding feeding, locomotor activity and sleep in \textit{Drosophila melanogater}, I manipulated the activity of MIP\textsuperscript{W{\"U}} cells by using newly generated \textit{Mip\textsuperscript{W{\"U}}-Gal4} lines. Thermogenetical activation or genetical silencing of MIP\textsuperscript{W{\"U}} celles did not affect feeding behaviour and resulted in changes in the sleep status. \par My results are in contradiction to a recent research of Min Soohong and colleagues who demonstrated a role of MIPs in the regulation of food intake and body weight in \textit{Drosophila}. They showed that constitutive silencing of MIP\textsuperscript{KR} cells increased food intake and body weight, whereas thermogenetic activation of MIP\textsuperscript{KR} cells decreased food intake and body weight by using \textit{Mip\textsuperscript{KR}-Gal4} driver. Then I repeated the experiments with the \textit{Mip\textsuperscript{KR}-Gal4} driver, but could not reproduce the results. Interestingly, I just observed the opposite phenotype. When MIP\textsuperscript{KR} cells were silenced by expressing UAS-tetanus toxin (\textit{UAS-TNT}), the \textit{Mip\textsuperscript{KR}\$>\$TNT} flies showed reduced food intake. The thermogenetic activation of MIP\textsuperscript{KR} cells did not affect food intake. Furthermore, I observed that the thermogenetic activation of MIP\textsuperscript{KR} cells strongly reduced the sleep duration.\par In the third part of the dissertation, I adapted and improved a method for metabolic labelling for \textit{Drosophila} peptides to quantify the relative amount of peptides and the released peptides by mass spectrometry under different physiological and behavioural conditions. qRT-PCR is a practical technique to measure the transcription and the corresponding mRNA level of a given peptide. However, this is not the only way to measure the translation and production of peptides. Although the amount of peptides can be quantified by mass spectrometry, it is not possible to distinguish between peptides stored in vesicles and released peptides in CNS extracts. I construct an approach to assess the released peptides, which can be calculated by comparing the relative amount of peptides between two timepoints in combination with the mRNA levels which can be used as semiquantitative proxy reflecting the production of peptides during this period. \par After optimizing the protocol for metabolic labelling, I carried out a quantitative analysis of peptides before and after eclosion as a test. I was able to show that the EH- and SIFa-related peptides were strongly reduced after eclosion. This is in line with the known function and release of EH during eclosion. Since this test was positive, I next used the metabolic labelling in \textit{Drosophila} adult, which were either fed \textit{ad libitum} or starved for 24 hrs, and analysed the effects on the amount of AstA and MIPs. In the mRNA level, my results showed that in the brain \textit{AstA} mRNA level in the 24 hrs starved flies was increased compared to in the \textit{ad libitum} fed flies, whereas in the gut the \textit{AstA} mRNA level was decreased. Starvation induced the reduction of \textit{Mip} mRNA level in the brain and gut. Unfortunately, due to technical problems I was unable to analyse the metabolic labelled peptides during the course of this thesis.\par}, subject = {AstA}, language = {en} } @phdthesis{Balasubramanian2018, author = {Balasubramanian, Srikkanth}, title = {Novel anti-infectives against pathogenic bacteria}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-163882}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Marine sponge-associated actinomycetes are reservoirs of diverse natural products with novel biological activities. Their antibiotic potential has been well explored against a range of Gram positive and negative bacteria. However, not much is known about their anti-infective or anti-virulence potential against human pathogens. This Ph.D. project aimed to investigate the anti-infective (anti-Shiga toxin and anti-biofilm) potential of sponge-derived actinobacteria through identification and isolation of their bioactive metabolites produced and characterizing their mechanism of action by transcriptomics. This thesis is divided into three studies with the overall objective of exploring the anti-infective efficacy of actinomycetes-derived extracts and compound(s) that could possibly be used as future therapeutics. The first study deals with investigation on the anti-Shiga toxin effects of sponge-associated actinomycetes. Diarrheal infections pose a huge burden in several developing and developed countries. Diarrheal outbreaks caused by Enterohemorrhagic Escherichia coli (EHEC) could lead to life-threatening complications like gastroenteritis and haemolytic uremic syndrome (HUS) if left untreated. Shiga toxin (Stx) produced by EHEC is a major virulence factor that negatively affects the human cells, leading them to death via apoptosis. Antibiotics are not prescribed against EHEC infections since they may enhance the risk of development of HUS by inducing the production and release of Stx from disintegrating bacteria and thereby, worsening the complications. Therefore, an effective drug that blocks the Stx production without affecting the growth needs to be urgently developed. In this study, the inhibitory effects of 194 extracts and several compounds originating from a collection of marine sponge-derived actinomycetes were evaluated against the Stx production in EHEC strain EDL933 with the aid of Ridascreen® Verotoxin ELISA assay kit. It was found that treatment with the extracts did not lead to significant reduction in Stx production. However, strepthonium A isolated from the culture of Streptomyces sp. SBT345 (previously cultivated from the Mediterranean sponge Agelas oroides) reduced the Stx production (at 80 μM concentration) in EHEC strain EDL933 without affecting the bacterial growth. The structure of strepthonium A was resolved by spectroscopic analyses including 1D and 2D-NMR, as well as ESI-HRMS and ESI-HRMS2 experiments. This demonstrated the possible application of strepthonium A in restraining EHEC infections. VI In the second study, the effect of marine sponge-associated actinomycetes on biofilm formation of staphylococci was assessed. Medical devices such as contact lenses, metallic implants, catheters, pacemakers etc. are ideal ecological niches for formation of bacterial biofilms, which thereby lead to device-related infections. Bacteria in biofilms are multiple fold more tolerant to the host immune responses and conventional antibiotics, and hence are hard-to-treat. Here, the anti-biofilm potential of an organic extract derived from liquid fermentation of Streptomyces sp. SBT343 (previously cultivated from the Mediterranean sponge Petrosia ficiformis) was reported. Results obtained in vitro demonstrated its anti-biofilm (against staphylococci) and non-toxic nature (against mouse macrophage (J774.1), fibroblast (NIH/3T3) and human corneal epithelial cell lines). Interestingly, SBT343 extract could inhibit staphylococcal biofilm formation on polystyrene, glass and contact lens surfaces without affecting the bacterial growth. High Resolution Fourier Transform Mass Spectrometry (HR-MS) analysis indicated the complexity and the chemical diversity of components present in the extract. Preliminary physio-chemical characterization unmasked the heat stable and non-proteinaceous nature of the active component(s) in the extract. Finally, fractionation experiments revealed that the biological activity was due to synergistic effects of multiple components present in the extract. In the third study, anti-biofilm screening of 50 organic extracts generated from solid and liquid fermentation of 25 different previously characterized sponge-derived actinomycetes was carried out. This led to identification of the anti-biofilm organic extract derived from the solid culture of Streptomyces sp. SBT348 (previously cultivated from the Mediterranean sponge Petrosia ficiformis). Bioassay-guided fractionation was employed to identify the active fraction Fr 7 in the SBT348 crude extract. Further purification with semi-preparative HPLC led to isolation of the bioactive SKC1, SKC2, SKC3, SKC4 and SKC5 sub-fractions. The most active sub-fraction SKC3 was found to be a pure compound having BIC90 and MIC values of 3.95 μg/ml and 31.25 μg/ml against S. epidermidis RP62A. SKC3 had no apparent toxicity in vitro on cell lines and in vivo on the greater wax moth Galleria melonella larvae. SKC3 was stable to heat and enzymatic treatments indicating its non-proteinaceous nature. HR-MS analysis revealed the mass of SKC3 to be 1258.3 Da. Structure elucidation of SKC3 with the aid of 1D and 2D-NMR data is currently under investigation. Further, to obtain insights into the mode of action of SKC3 on S. epidermidis RP62A, RNA sequencing was done. Transcriptome data revealed that SKC3 was recognized by RP62A at 20 min and SKC3 negatively interfered with the central metabolism of staphylococci at 3 h. Taken VII together, these findings suggest that SKC3 could be a lead structure for development of new anti-staphylococcal drugs. Overall, the results obtained from this work underscore the anti-infective attributes of actinomycetes consortia associated with marine sponges, and their applications in natural product drug discovery programs.}, subject = {Marine sponges}, language = {en} } @phdthesis{Koenig2018, author = {K{\"o}nig, Julia Maria}, title = {Fungal grass endophytes and their dependence on land-use intensity}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-163890}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Plant-associated fungi can affect the plants' interaction with herbivores and other microorganisms. For example, many common forage grasses are infected with Epichlo{\"e} endophytes. The endophytes systemically colonize the aerial parts of the plants. They produce bioprotective alkaloids that can negatively affect insects and livestock feeding on the grasses, and interact with other fungal species which living from the plants' nutrients. Environmental conditions strongly influence Epichlo{\"e} endophytes. Endophyte-mediated effects on herbivores are more pronounced under increased temperatures and the endophytes may benefit from land use in managed grasslands. Under the framework of the large-scale German project "Biodiversity Exploratories", I investigated whether infection rates and alkaloid concentrations of Epichlo{\"e} festucae var. lolii in Lolium perenne (Chapter I) and Epichlo{\"e} endophytes (E. uncinata, E. siegelii) in Festuca pratensis (Chapter II) depend on land use and season. Further I analysed, whether foliar fungal assemblages of L. perenne are affected by the presence of Epichlo{\"e} endophytes (Chapter IV).}, subject = {Endophytische Pilze}, language = {en} } @phdthesis{Wohlfart2018, author = {Wohlfart, Christian}, title = {The Yellow River Basin in Transition - Multi-faceted Land Cover Change Analysis in the Yellow River Basin in the Context of Global Change Using Multi-sensor Remote Sensing Imagery}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-163724}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {As a cradle of ancient Chinese civilization, the Yellow River Basin has a very long human-environment interrelationship, where early anthropogenic activities re- sulted in large scale landscape modifications. Today, the impact of this relationship has intensified further as the basin plays a vital role for China's continued economic development. It is one of the most densely-populated, fastest growing, and most dynamic regions of China with abundant natural and environmental resources providing a livelihood for almost 190 million people. Triggered by fundamental economic reforms, the basin has witnessed a spectacular economic boom during the last decades and can be considered as an exemplary blueprint region for contemporary dynamic Global Change processes occurring throughout the country, which is currently transitioning from an agrarian-dominated economy into a modern urbanized society. However, this resourcesdemanding growth has led to profound land use changes with adverse effects on the Yellow River social-ecological systems, where complex challenges arise threatening a long-term sustainable development. Consistent and continuous remote sensing-based monitoring of recent and past land cover and land use change is a fundamental requirement to mitigate the adverse impacts of Global Change processes. Nowadays, technical advancement and the multitude of available satellite sensors, in combination with the opening of data archives, allow the creation of new research perspectives in regional land cover applications over heterogeneous landscapes at large spatial scales. Despite the urgent need to better understand the prevailing dynamics and underlying factors influencing the current processes, detailed regional specific land cover data and change information are surprisingly absent for this region. In view of the noted research gaps and contemporary developments, three major objectives are defined in this thesis. First (i), the current and most pressing social-ecological challenges are elaborated and policy and management instruments towards more sustainability are discussed. Second (ii), this thesis provides new and improved insights on the current land cover state and dynamics of the entire Yellow River Basin. Finally (iii), the most dominant processes related to mining, agriculture, forest, and urban dynamics are determined on finer spatial and temporal scales. The complex and manifold problems and challenges that result from long-term abuse of the water and land resources in the basin have been underpinned by policy choices, cultural attitude, and institutions that have evolved over centuries in China. The tremendous economic growth that has been mainly achieved by extracting water and exploiting land resources in a rigorous, but unsustainable manner, might not only offset the economic benefits, but could also foster social unrest. Since the early emergence of the first Chinese dynasties, flooding was considered historically as a primary issue in river management and major achievements have been made to tame the wild nature of the Yellow River. Whereas flooding is therefore largely now under control, new environmental and social problems have evolved, including soil and water pollution, ecological degradation, biodiversity decline, and food security, all being further aggravated by anthropogenic climate change. To resolve the contemporary and complex challenges, many individual environmental laws and regulations have been enacted by various Chinese ministries. However, these policies often pursue different, often contradictory goals, are too general to tackle specific problems and are usually implemented by a strong top-down approach. Recently, more flexible economic and market-based incentives (pricing, tradable permits, investments) have been successfully adopted, which are specifically tailored to the respective needs, shifting now away from the pure command and regulating instruments. One way towards a more holistic and integrated river basin management could be the establishment of a common platform (e.g. a Geographical Information System) for data handling and sharing, possibly operated by the Yellow River Basin Conservancy Commission (YRCC), where available spatial data, statistical information and in-situ measures are coalesced, on which sustainable decision-making could be based. So far, the collected data is hardly accessible, fragmented, inconsistent, or outdated. The first step to address the absence and lack of consistent and spatially up-to-date information for the entire basin capturing the heterogeneous landscape conditions was taken up in this thesis. Land cover characteristics and dynamics were derived from the last decade for the years 2003 and 2013, based on optical medium-resolution hightemporal MODIS Normalized Differenced Vegetation Index (NDVI) time series at 250 m. To minimize the inherent influence of atmospheric and geometric interferences found in raw high temporal data, the applied adaptive Savitzky-Golay filter successfully smoothed the time series and substantially reduced noise. Based on the smoothed time series data, a large variety of intra-annual phenology metrics as well as spectral and multispectral annual statistics were derived, which served as input variables for random forest (RF) classifiers. High quality reference data sets were derived from very high resolution imagery for each year independently of which 70 \% trained the RF models. The accuracy assessments for all regionally specific defined thematic classes were based on the remaining 30 \% reference data split and yielded overall accuracies of 87 \% and 84 \% for 2003 and 2013, respectively. The first regional adapted Yellow River Land Cover Products (YRB LC) depict the detail spatial extent and distribution of the current land cover status and dynamics. The novel products overall differentiate overall 18 land cover and use classes, including classes of natural vegetation (terrestrial and aquatic), cultivated classes, mosaic classes, non-vegetated, and artificial classes, which are not presented in previous land cover studies so far. Building on this, an extended multi-faceted land cover analysis on the most prominent land cover change types at finer spatial and temporal scales provides a better and more detailed picture of the Yellow River Basin dynamics. Precise spatio-temporal products about mining, agriculture, forest, and urban areas were examined from long-trem Landsat satellite time series monitored at annual scales to capture the rapid rate of change in four selected focus regions. All archived Landsat images between 2000 and 2015 were used to derive spatially continuous spectral-temporal, multi-spectral, and textural metrics. For each thematic region and year RF models were built, trained and tested based on a stablepixels reference data set. The automated adaptive signature (AASG) algorithm identifies those pixels that did not change between the investigated time periods to generate a mono-temporal reference stable-pixels data set to keep manual sampling requirements to a minimum level. Derived results gained high accuracies ranging from 88 \% to 98 \%. Throughout the basin, afforestation on the Central Loess Plateau and urban sprawl are identified as most prominent drivers of land cover change, whereas agricultural land remained stable, only showing local small-scale dynamics. Mining operations started in 2004 on the Qinghai-Tibet Plateau, which resulted in a substantial loss of pristine alpine meadows and wetlands. In this thesis, a novel and unique regional specific view of current and past land cover characteristics in a complex and heterogeneous landscape was presented by using a multi-source remote sensing approach. The delineated products hold great potential for various model and management applications. They could serve as valuable components for effective and sustainable land and water management to adapt and mitigate the predicted consequences of Global Change processes.}, subject = {Fernerkundung}, language = {en} } @phdthesis{KraehenbuehlAmstalden2018, author = {Kr{\"a}henb{\"u}hl Amstalden, Maria Cecilia}, title = {Development of a bacterial responsive antibiotic release system}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-163386}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {A major problem regarding public health is the emergence of antibiotic resistant bacterial strains, especially methicillin resistant Staphylococcus aureus (MRSA). This is mainly attributed to the unnecessary overuse of antimicrobial drugs by patients; however, one aspect that is often neglected is their untargeted mechanism of action, affecting not only the infection itself but also commensal bacteria which are often opportunistic pathogens causing many diseases as well. Therefore, our goal was to develop a bioresponsive antibiotic delivery system triggered by virulence factors. The designed system is comprised of a polymer to enhance its pharmacokinetic profile, a peptide cleavable linker, and the antibiotic agent itself. The bacterial protease aureolysin which is expressed by S. aureus during infections would cleave the linker and partially release the antibiotic which would be still attached to a remaining tetrapeptide. These would be cleaved by a group of proteases naturally present in plasma called aminopeptidases, finally releasing the compound. In the first part of this project, we searched for a suitable sequence to serve as a cleavable linker. It should be sensitive towards the target bacterial protease but not be cleaved by any human enzymes to guarantee the specificity of the system. Therefore, we synthesized three peptide sequences via Solid Phase Peptide Synthesis and incubated them with aureolysin as well as with many human matrix Metalloproteases. The analysis and quantification of enzymatic activity was monitored chromatographically (RP-HPLC). The plasminogen originated sequence was chosen since it was not sensitive towards MMPs, but cleaved by aureolysin. In the second part, we tried to incorporate the chosen peptide sequences as crosslinkers in hydrogel formulations. The purpose was to physically incorporate the antibiotic within the hydrogel, which would be released by the cleavage of those sequences and the consequent loosening the hydrogel net. For that purpose we used a commercially available hydrogel kit with a PVA matrix modified with maleimide, which allows a conjugation reaction with thiol functionalized crosslinkers. Three fluorophores were chosen to serve as antibiotic models and a diffusion assay was performed. Only the glomerular structured Green Fluorescent Protein (GFP) presented a low diffusion rate, thus the aureolysin release assays were performed only using this prototype. Assays showed that with a low hydrogel polymer concentration, the fluorophore either quickly diffused into the medium or was not released at all. The physical incorporation of the antibiotic within the hydrogel pores was therefore abolished as a suitable release approach. For a second attempt, we covalently bound a fluorophore to the linker, which was conjugated to the hydrogel matrix. The incubation with aureolysin and subsequent RP-HPLC analysis showed a peak with the same retention time correspondent to the fragment product after cleavage of the free linker. This is a proof that the concept of linking the peptide sequence to the antibiotic is a promising strategy for its bioresponsive release. Within the third part of this study, we analyzed the degradation of the resulted fragment after aureolysin activity and subsequent full release of the antibiotic by human aminopeptidases. We determined the concentration of those enzymes in human plasma and synthesized the fragment by conjugating the tetrapeptide sequence to aminofluorescein via EDC/NHS reaction. By incubating the construct with the lowest aminopeptidase concentration measured in plasma, the fluorophore was completely released within two hours, showing the efficacy of these enzymes as bioresponsive agents. The last part was the construction of the PEGylated linker-antibiotic. For this purpose we chose the tetracycline like antibiotic chelocardin (CHD) as our prototype. The conjugation of the linker- CHD to the polymer was performed by copper free click chemistry. The cleavage rate of the linker by aureolysin was very similar to the one obtained for the free peptide, indicating that the PEGylation does not interfere on the enzymatic activity. However, by trying to increase the loading ratio of chelocardin onto the polymer, we observed a very low cleavage rate for the system, indicating the formation of aggregates by those constructs. The designed system has proved to be a smart strategy for the delivery on demand of antibiotics in which the drug is only released by the presence of S. aureus during their virulent state.}, subject = {Arzneimittelforschung}, language = {en} } @phdthesis{Bury2018, author = {Bury, Susanne}, title = {Molekularbiologische Untersuchungen der antagonistischen Effekte des probiotischen \(Escherichia\) \(coli\) Stamms Nissle 1917 auf Shiga-Toxin produzierende \(Escherichia\) \(coli\) St{\"a}mme}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-163401}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Shiga toxin produzierende E. coli (STEC) stellen mit einer Infektionsdosis von gerade einmal 100 Bakterien ein großes Risiko f{\"u}r unsere Gesundheit dar. Betroffene Patienten k{\"o}nnen milde Krankheitssymptome wie w{\"a}ssrigen Durchfall aufweisen, welcher sich allerdings zu blutigem Durchfall oder dem h{\"a}molytisch ur{\"a}mischen Syndrom (HUS) weiterentwickeln kann. Die Ursache f{\"u}r das Krankheitsbild ist das zytotoxische Protein Shiga-Toxin (Stx), welches von STEC St{\"a}mmen produziert wird, eukaryotischen Zellen angreift und den apoptotischen Zelltod induziert. Es konnte gezeigt werden, dass infizierte Patienten in ihrem Krankheitsverlauf stark variieren, was unter anderem auf die Zusammensetzung ihrer Mikrobiota zur{\"u}ckzuf{\"u}hren sein k{\"o}nnte. Diesbez{\"u}glich k{\"o}nnen zum Beispiel einige Bakterien bereits die Darmbesiedlung von STEC St{\"a}mmen unterbinden, wohingegen andere die Toxin Produktion der pathogenen St{\"a}mme beeinflussen und wieder andere von den stx tragenden Phagen infiziert werden k{\"o}nnen und daraufhin selbst zu Toxin produzierenden St{\"a}mmen werden. Da die genetischen Informationen f{\"u}r das Toxin auf einem Prophagen im Genom der STEC St{\"a}mme kodiert ist, f{\"u}hrt eine Antibiotika Behandlung von infizierten Patienten zwar zum Tod der Bakterien, hat allerdings auch einen Wechsel vom lysogenen zum lytischen Phagen Zyklus und damit einen enormen Anstieg an freigesetztem Stx zur Folge. In den letzten Jahrzehnten kam es immer wieder zu Epidemien mit STEC St{\"a}mmen, welche auch einige Todesopfer forderten. Die Behandlung von Patienten erfolgt auf Grund von mangelnden Behandlungsm{\"o}glichkeiten meist nur symptomatisch, weswegen neue Strategien f{\"u}r die Behandlung einer STEC Infektion dringend ben{\"o}tigt werden. Der probiotische E. coli Stamm Nissle 1917 (EcN) z{\"a}hlt bereits seit mehr als 100 Jahren als Medikament f{\"u}r Behandlungen von Darmentz{\"u}ndungen. In vitro und in vivo Studien mit dem probiotischen Stamm und STEC St{\"a}mmen konnten zeigen, dass EcN die Produktion von Stx unterdr{\"u}ckt und gleichzeitig die STEC Zellzahl reduziert. Diese Ergebnisse waren der Anlass f{\"u}r diese Studie in der die Auswirkungen von EcN auf STEC St{\"a}mme genauer untersucht wurden, um eine m{\"o}gliche Behandlung von STEC Infektionen mit dem Probiotikum zu gew{\"a}hrleisten. Eines der Hauptziele dieser Studie war es, herauszufinden, ob EcN von stx-Phagen infiziert werden kann und damit selbst zu einem Toxin Produzenten wird. In diesem Falle w{\"a}re eine Behandlung mit dem E. coli Stamm ausgeschlossen, da es den Krankheitsverlauf verschlimmern k{\"o}nnte. Verschiedene experimentelle Ans{\"a}tze in denen versucht wurde den YaeT stx-Phagen Rezeptor tragenden Stamm zu infizieren schlugen fehl. Weder mittels PCR Analysen, Phagen Plaque Assays oder der Phagen Anreicherung konnte eine Lyse oder eine Prophagen Integration nachgewiesen werden. Transkriptom Analysen konnten zeigen, dass Gene eines lambdoiden Prophagen in EcN in Anwesenheit von stx-Phagen stark reguliert sind. Auch andere E. coli St{\"a}mme, welche sich ebenfalls durch eine Resistenz gegen{\"u}ber einer stx-Phagen Infektion auswiesen, wurden positiv auf lambdoide Prophagen untersucht. Einzig dem stx-Phagen sensitiven K-12 Stamm MG1655 fehlt ein kompletter lambdoider Prophage, weswegen die Vermutung nahe liegt, dass ein intakter lambdoider Prophage vor der Superinfektion mit stx-Phagen sch{\"u}tzten kann. In weiteren Experimenten wurde der Einfluss der Mikrozin-negativen EcN Mutante SK22D auf STEC St{\"a}mme untersucht. Es konnte gezeigt werden, dass SK22D nicht nur die Produktion des zytotoxischen Proteins unterdr{\"u}ckt, sondern auch mit der Produktion der stx-Phagen von allen getesteten STEC St{\"a}mmen interferiert (O157:H7, O26:H11, O145:H25, O103:H2, O111:H- und zwei O104:H4 Isolate vom STEC Ausbruch in Deutschland im Jahr 2011). Transwell Studien konnten zeigen, dass der Faktor, welcher die Transkription des Prophagen unterdr{\"u}ckt, von SK22D sekretiert wird. Die Ergebnisse lassen vermuten, dass die Pr{\"a}senz von SK22D den lysogenen Zustand des Prophagen st{\"u}tzt und somit den lytischen Zyklus unterdr{\"u}ckt. Da stx-Phagen eine große Gefahr darstellen andere E. coli St{\"a}mme zu infizieren, haben wir uns in weiteren Studien dem Einfluss von EcN auf isolierte Phagen gewidmet. Die Kultivierungsexperimente von EcN mit Phagen zeigten, dass der probiotische Stamm in der Lage war die stx-Phagen in ihrer Effizienz der Lyse des K 12 Stammes MG1655 von~ 1e7 pfus/ml auf 0 pfus/ml nach einer 44 st{\"u}ndigen Inkubation zu inaktivieren. Diese Inaktivierung konnte auf die Aktivit{\"a}t eines hitzestabilen Proteins, welches in der station{\"a}ren Wachstumsphase synthetisiert wird, zur{\"u}ckgef{\"u}hrt werden. Studien welche einen Anstieg der Biofilmmasse zur Folge hatten zeigten eine gesteigerte Effizienz in der Phagen Inaktivierung, weswegen Komponenten des Biofilms m{\"o}glicherweise die Phagen Inaktivierung herbeif{\"u}hren. Neben dem direkten Einfluss auf die Phagen wurde auch ein Schutzeffekt von SK22D gegen{\"u}ber dem stx-Phagen empf{\"a}nglichen K 12 St{\"a}mmen untersucht. Lysogene K 12 St{\"a}mme zeichneten sich durch eine enorme Stx und stx-Phagen Produktion aus. Die Pr{\"a}senz von SK22D konnte den K 12 vermittelten Anstieg der pathogenen Faktoren unterbinden. Transwell Ergebnisse und Kinetik Studien lassen vermuten, dass SK22D eher die Phagen Infektion von K-12 St{\"a}mmen unterbindet als die Lyse von lysogenen K-12 St{\"a}mmen zu st{\"o}ren. Eine m{\"o}gliche Erkl{\"a}rung f{\"u}r den Schutz der K-12 St{\"a}mme vor einer stx-Phagen Infektion k{\"o}nnte darin liegen, dass die K-12 St{\"a}mme innerhalb der SK22D Kultur wachsen und dadurch von den infekti{\"o}sen Phagen abgeschirmt werden. Zusammenfassend konnte in dieser Studie gezeigt werden, dass der probiotische Stamm EcN sowohl die Lyse von STEC St{\"a}mmen unterdr{\"u}ckt als auch die infekti{\"o}sen stx-Phagen inaktiviert und sensitive E. coli St{\"a}mme vor der Phagen Infektion sch{\"u}tzen kann. Diese Ergebnisse sollten als Grundlage f{\"u}r in vivo Studien herangezogen werden, um eine m{\"o}gliche Behandlung von STEC infizierten Patienten mit dem Probiotikum zu gew{\"a}hrleisten.}, subject = {EHEC}, language = {en} } @phdthesis{Dolles2018, author = {Dolles, Dominik}, title = {Development of Hybrid GPCR Ligands: Photochromic and Butyrylcholinesterase Inhibiting Human Cannabinoid Receptor 2 Agonists}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-163445}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {While life expectancy increases worldwide, treatment of neurodegenerative diseases such as AD becomes a major task for industrial and academic research. Currently, a treatment of AD is only symptomatical and limited to an early stage of the disease by inhibiting AChE. A cure for AD might even seem far away. A rethinking of other possible targets is therefore necessary. Addressing targets that can influence AD even at later stages might be the key. Even if it is not possible to find a cure for AD, it is of great value for AD patients by providing an effective medication. The suffering of patients and their families might be relieved and remaining years may be spent with less symptoms and restrictions. It was shown that a combination of hCB2R agonist and BChE inhibitor might exactly be a promising approach to combat AD. In the previous chapters, a first investigation of dual-acting compounds that address both hCB2R and BChE was illustrated (figure 6.1). A set of over 30 compounds was obtained by applying SARs from BChE inhibitors to a hCB2R selective agonist developed by AstraZeneca. In a first in vitro evaluation compounds showed selectivity over hCB1R and AChE. Further investigations could also prove agonism and showed that unwanted off-target affinity to hMOP receptor could be designed out. The development of a homology model for hCB2R (based on a novel hCB1R crystal) could further elucidate the mode of action of the ligand binding. Lastly, first in vivo studies showed a beneficial effect of selected dual-acting compounds regarding memory and cognition. Since these first in vivo studies mainly aim for an inhibition of the BChE, it should be the aim of upcoming projects to proof the relevance of hCB2R agonism in vivo as well. In addition, pharmacokinetic as well as solubility studies may help to complete the overall picture. Currently, hybrid-based dual-acting hCB2R agonists and selective BChE inhibitors are under investigation in our lab. First in vitro evaluations showed improved BChE inhibition and selectivity over AChE compared to tacrine.78 Future in vitro and in vivo studies will clarify their usage as drug molecules with regard to hepatotoxicity and blood-brain barrier penetration. Since the role of hCB2R is not yet completely elucidated, the use of photochromic toolcompounds becomes an area of interest. These tool-compounds (and their biological effect) can be triggered upon irradiation with light and thus help to investigate time scales and ligand binding. A set of 5-azobenzene benzimidazoles was developed and synthesized. In radioligand binding studies, affinity towards hCB2R could be increased upon irradiation with UV-light (figure 6.2). This makes the investigated compounds the first GPCR ligands that can be activated upon irradiation (not vice versa). The aim of upcoming research will be the triggering of a certain intrinsic activity by an "efficacy-switch". For this purpose, several attempts are currently under investigation: an introduction of an azobenzene moiety at the 2-position of the benzimidazole core already led to a slight difference in efficacy upon irradiation with UV light. Another approach going on in our lab is the development of hCB1R switches based on the selective hCB1R inverse agonist rimonabant. First in vitro results are not yet available (figure 6.3).}, subject = {Ligand }, language = {en} } @phdthesis{SchuesslergebHecht2018, author = {Sch{\"u}ßler [geb. Hecht], Nina Kristin Petra}, title = {Novel formulation principles for bioavailability enhancement of poorly water-soluble and poorly permeable drugs}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-162766}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Since four decades, high-throughput screenings have been conducted in drug discovery, fuelling the identification of potential new drug candidates. This approach, however, often promotes the detection of compounds with undesired physico-chemical properties like poor aqueous solubility or low membrane permeability. Indeed, dissolution and absorption of a drug are prerequisites for systemic exposure and therapeutic effects. Therefore, innovative strategies to optimize unfavourable performance of new drug candidates are in great demand in order to increase drug concentrations at the site of action whilst simultaneously reducing drug variability. In chapter I of this research work, hydrophobic ion pairing (HIP) is discussed as a promising strategy to improve the bioavailability of BCS class III compounds, which have high aqueous solubility and low permeability. The review points out the limitations of poorly absorbable drugs and details the approach of pairing these APIs with hydrophobic counterions. Apart from the motivation to tailor physico-chemical, biopharmaceutical and toxicological properties of BCS class III compounds, the hydrophobic ion pairing facilitates their formulation into drug delivery systems. Besides advantageous effects, disadvantages of the ion pair formation, such as the decreased aqueous solubility of the ions pair, are critically outlined. Finally, the review covers an overview of non-invasive administration routes permitted after ion pair formation, including oral/enteral, buccal, nasal, ocular and transdermal drug administration. Overall, the HIP approach offers substantial benefits regarding the bioavailability enhancement of BCS class III compounds. Chapter II concerns GHQ168 developed by Holzgrabe et al., a BCS class II compound characterized by low aqueous solubility and high permeability. GHQ168 was developed for the treatment of human African trypanosomiasis (HAT), a tropical disease for which novel active compounds are urgently needed. This lead compound was found to be very active against trypanosoma brucei brucei and trypanosoma brucei rhodesiense in cell culture assays, however, the low aqueous solubility prevented further preclinical development. To target this drawback, two different approaches were selected, including (I) the chemical modification and (II) the spray drying of GHQ168. The newly synthesized set of derivatives as well as the spray dried GHQ168 were subjected to a physico-chemical and microbiological characterization. It turned out that both approaches successfully improved aqueous solubility, however, for the derivatives of GHQ168 at the expense of activity. Furthermore, the pharmacokinetic parameters of GHQ168 and of the most active derivatives, GHQ242 and GHQ243, were evaluated. Elimination half-lives between 1.5 to 3.5 h after intraperitoneal administration and modest to strong serum albumin binding for GHQ243 (45\%) and GHQ168 (80\%) and very high binding (> 99\%) for GHQ242 were detected. The spray dried formulation of GHQ168, as well as GHQ242 and GHQ243 were investigated in two in vivo studies in mice infected with t. b. rhodesiense (STIB900), referred to as (I) stringent model and (II) early-treatment model. In the stringent model (2 applications/day on day 3-6 after infection) the mean survival duration (MSD) of mice treated with spray dried GHQ168 exceeded the MSD of the untreated control group (17 days versus 9 days), a difference that was statistically significant. In contrast, no statistical difference was observed for GHQ242 (14 days) and GHQ243 (12 days). GHQ168 was further assessed in the early-treatment model (2 applications/day on day 1-4 after infection) and again a statistically significant improvement of MSD (32 days (end of observation period) versus 7 days) was observed. Finally, exciting antitrypanosomal efficacy for the spray dried formulation of GHQ168 was demonstrated. NADPH oxidases (NOX) were found to be the main source of endothelial reactive oxygen species (ROS) formation. Chapter III reports on the formulation studies on triazolopyrimidine derivatives from the VAS library, a set of NADPH oxidase inhibitors. These were developed for the treatment of elevated ROS levels, which contribute to the development of cardiovascular diseases. Although in vitro results from numerous studies indicated promising efficacy and selectivity for the VAS-compounds, the low water solubility impeded the in vivo translation and further preclinical development. For this reason, three derivatives, VAS2870, VAS3947, and VAS4024 were physico-chemically characterized and VAS3947, the most soluble compound, was selected for further formulation studies. These approaches included (I) spray drying, (II) microemulsification and (III) complexation with cyclodextrins in order to develop formulations for oral and parenteral application. Solubility improvement of VAS3947 was successfully demonstrated for all preparations as expressed by supersaturation ratios in comparison to the solubility of the unformulated compound. For seven spray dried formulations, the ratio ranged from 3-9, and the ratio for four microemulsions was 8-19 after 120 min, respectively. The six cyclodextrin formulations achieved the highest supersaturation ratio between 3 and 174 after 20 hours. NMR measurements elucidated the inclusion of VAS3947 within the CD's cavity as well as the interaction with its outer surface. Ultimately, NOX inhibitors were opened for oral and parenteral administration for the first time. After successful solubility improvement of VAS3947, further investigations towards in vivo studies were conducted including stability studies with a focus on stability in solution and in plasma as presented in chapter IV. Furthermore, permeability and cytotoxicity assays were performed for the first time. It turned out that VAS3947 was instable in buffer and when exposed to light. Moreover, the compound showed decomposition in the presence of mouse microsomes and in human plasma. The VAS compounds contain an oxazol moiety linked to the triazolopyrimidine skeleton via a thioether. This structural element is responsible for the efficacy of the compound class, however it is susceptible to hydrolysis and to further degradation reactions. Moreover, VAS3947 harmed membrane integrity in the cell permeability assays and cytotoxicity investigations in HEK-293 and HEP-G2 cells revealed IC50 values in the same concentration range as reported for efficacy assays. Summarized, it was demonstrated that substances from the VAS library were no appropriate model compounds for ROS investigations nor suitable candidates for further preclinical development.}, subject = {L{\"o}slichkeit}, language = {en} } @phdthesis{Wiedenmann2018, author = {Wiedenmann, Jonas}, title = {Induced topological superconductivity in HgTe based nanostructures}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-162782}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {This thesis describes the studies of topological superconductivity, which is predicted to emerge when pair correlations are induced into the surface states of 2D and 3D topolog- ical insulators (TIs). In this regard, experiments have been designed to investigate the theoretical ideas first pioneered by Fu and Kane that in such system Majorana bound states occur at vortices or edges of the system [Phys. Rev. Lett. 100, 096407 (2008), Phys. Rev. B 79, 161408 (2009)]. These states are of great interest as they constitute a new quasiparticle which is its own antiparticle and can be used as building blocks for fault tolerant topological quantum computing. After an introduction in chapter 1, chapter 2 of the thesis lays the foundation for the understanding of the field of topology in the context of condensed matter physics with a focus on topological band insulators and topological superconductors. Starting from a Chern insulator, the concepts of topological band theory and the bulk boundary corre- spondence are explained. It is then shown that the low energy Hamiltonian of mercury telluride (HgTe) quantum wells of an appropriate thickness can be written as two time reversal symmetric copies of a Chern insulator. This leads to the quantum spin Hall effect. In such a system, spin-polarized one dimensional conducting states form at the edges of the material, while the bulk is insulating. This concept is extended to 3D topological insulators with conducting 2D surface states. As a preliminary step to treating topological superconductivity, a short review of the microscopic theory of superconductivity, i.e. the theory of Bardeen, Cooper, and Shrieffer (BCS theory) is presented. The presence of Majorana end modes in a one dimensional superconducting chain is explained using the Kitaev model. Finally, topological band insulators and conventional superconductivity are combined to effectively engineer p-wave superconductivity. One way to investigate these states is by measuring the periodicity of the phase of the Josephson supercurrent in a topological Josephson junction. The signature is a 4π-periodicity compared to the 2π-periodicity in conventional Josephson junctions. The proof of the presence of this effect in HgTe based Josephson junction is the main goal of this thesis and is discussed in chapters 3 to 6. Chapter 3 describes in detail the transport of a 3D topological insulator based weak link under radio-frequency radiation. The chapter starts with a review of the state of research of (i) strained HgTe as 3D topological insulator and (ii) the progress of induc- ing superconducting correlations into the topological surface states and the theoretical predictions of 3D TI based Josephson junctions. Josephson junctions based on strained HgTe are successfully fabricated. Before studying the ac driven Josephson junctions, the dc transport of the devices is analysed. The critical current as a function of temperature is measured and it is possible to determine the induced superconducting gap. Under rf illumination Shapiro steps form in the current voltage characteristic. A missing first step at low frequencies and low powers is found in our devices. This is a signature of a 4π-periodic supercurrent. By studying the device in a wide parameter range - as a 147148 SUMMARY function of frequency, power, device geometry and magnetic field - it is shown that the results are in agreement with the presence of a single gapless Andreev doublet and several conventional modes. Chapter 4 gives results of the numerical modelling of the I -V dynamics in a Josephson junction where both a 2π- and a 4π-periodic supercurrents are present. This is done in the framework of an equivalent circuit representation, namely the resistively shunted Josephson junction model (RSJ-model). The numerical modelling is in agreement with the experimental results in chapter 3. First, the missing of odd Shapiro steps can be understood by a small 4π-periodic supercurrent contribution and a large number of modes which have a conventional 2π-periodicity. Second, the missing of odd Shapiro steps occurs at low frequency and low rf power. Third, it is shown that stochastic processes like Landau Zener tunnelling are most probably not responsible for the 4π contribution. In a next step the periodicity of Josephson junctions based on quantum spin Hall insulators using are investigated in chapter 5. A fabrication process of Josephson junctions based on inverted HgTe quantum wells was successfully developed. In order to achieve a good proximity effect the barrier material was removed and the superconductor deposited without exposing the structure to air. In a next step a gate electrode was fabricated which allows the chemical potential of the quantum well to be tuned. The measurement of the diffraction pattern of the critical current Ic due to a magnetic field applied perpendicular to the sample plane was conducted. In the vicinity to the expected quantum spin Hall phase, the pattern resembles that of a superconducting quantum interference device (SQUID). This shows that the current flows predominantly on the edges of the mesa. This observation is taken as a proof of the presence of edge currents. By irradiating the sample with rf, missing odd Shapiro steps up to step index n = 9 have been observed. This evidences the presence of a 4π-periodic contribution to the supercurrent. The experiment is repeated using a weak link based on a non-inverted HgTe quantum well. This material is expected to be a normal band insulator without helical edge channels. In this device, all the expected Shapiro steps are observed even at low frequencies and over the whole gate voltage range. This shows that the observed phenomena are directly connected to the topological band structure. Both features, namely the missing of odd Shapiro steps and the SQUID like diffraction pattern, appear strongest towards the quantum spin Hall regime, and thus provide evidence for induced topological superconductivity in the helical edge states. A more direct way to probe the periodicity of the Josephson supercurrent than using Shapiro steps is the measurement of the emitted radiation of a weak link. This experiment is presented in chapter 6. A conventional Josephson junction converts a dc bias V to an ac current with a characteristic Josephson frequency fJ = eV /h. In a topological Josephson junction a frequency at half the Josephson frequency fJ /2 is expected. A new measurement setup was developed in order to measure the emitted spectrum of a single Josephson junction. With this setup the spectrum of a HgTe quantum well based Josephson junction was measured and the emission at half the Josephson frequency fJ /2 was detected. In addition, fJ emission is also detected depending on the gate voltage and detection frequency. The spectrum is again dominated by half the Josephson emission at low voltages while the conventional emission is determines the spectrum at high voltages. A non-inverted quantum well shows only conventional emission over the whole gateSUMMARY 149 voltage and frequency range. The linewidth of the detected frequencies gives a measure on the lifetime of the bound states: From there, a coherence time of 0.3-4ns for the fJ /2 line has been deduced. This is generally shorter than for the fJ line (3-4ns). The last part of the thesis, chapter 7, reports on the induced superconducting state in a strained HgTe layer investigated by point-contact Andreev reflection spectroscopy. For the experiment, a HgTe mesa was fabricated with a small constriction. The diameter of the orifice was chosen to be smaller than the mean free path estimated from magne- totransport measurements. Thus one gets a ballistic point-contact which allows energy resolved spectroscopy. One part of the mesa is covered with a superconductor which induces superconducting correlations into the surface states of the topological insulator. This experiment therefore probes a single superconductor normal interface. In contrast to the Josephson junctions studied previously, the geometry allows the acquisition of energy resolved information of the induced superconducting state through the measurement of the differential conductance dI/dV as a function of applied dc bias for various gate voltages, temperatures and magnetic fields. An induced superconducting order parame- ter of about 70µeV was extracted but also signatures of the niobium gap at the expected value around Δ Nb ≈ 1.1meV have been found. Simulations using the theory developed by Blonder, Tinkham and Klapwijk and an extended model taking the topological surface states into account were used to fit the data. The simulations are in agreement with a small barrier at the topological insulator-induced topological superconductor interface and a high barrier at the Nb to topological insulator interface. To understand the full con- ductance curve as a function of applied voltage, a non-equilibrium driven transformation is suggested. The induced superconductivity is suppressed at a certain bias value due to local electron population. In accordance with this suppression, the relevant scattering regions change spatially as a function of applied bias. To conclude, it is emphasized that the experiments conducted in this thesis found clear signatures of induced topological superconductivity in HgTe based quantum well and bulk devices and opens up the avenue to many experiments. It would be interesting to apply the developed concepts to other topological matter-superconductor hybrid systems. The direct spectroscopy and manipulation of the Andreev bound states using circuit quantum electrodynamic techniques should be the next steps for HgTe based samples. This was already achieved in superconducting atomic break junctions by the group in Saclay [Science 2015, 349, 1199-1202 (2015)]. Another possible development would be the on-chip detection of the emitted spectrum as a function of the phase φ through the junction. In this connection, the topological junction needs to be shunted by a parallel ancillary junction. Such a setup would allow the current phase relation I(φ) directly and the lifetime of the bound states to be measured directly. By coupling this system to a spectrometer, which can be another Josephson junction, the energy dependence of the Andreev bound states E(φ) could be obtained. The experiments on the Andreev reflection spectroscopy described in this thesis could easily be extended to two dimensional topological insulators and to more complex geometries, like a phase bias loop or a tunable barrier at the point-contact. This work might also be useful for answering the question how and why Majorana bound states can be localized in quantum spin Hall systems.}, subject = {Quecksilbertellurid}, language = {en} } @phdthesis{Ries2018, author = {Ries, Mathias}, title = {The Role of the Central Bank, Banks and the Bond Market in the Paradigm of Monetary Analysis}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-162997}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Als Folge der Finanzkrise 2008/09 sind unter einigen {\"O}konomen Zweifel an der Ad{\"a}quanz der theoretischen Modelle aufgekommen, insbesondere {\"u}ber diejenigen, die den Anspruch erheben, Finanzm{\"a}rkte und Banken zu modellieren. Aufgrund dieser Zweifel folgen einige {\"O}konomen einer neuen Str{\"o}mung, indem sie versuchen, ein neues Paradigma zu entwickeln, das auf einer geldwirtschaftlichen anstatt auf einer g{\"u}terwirtschaftlichen Theorie beruht. Der Hauptunterschied zwischen diesen beiden Sichtweisen ist, dass in einer G{\"u}terwirtschaft Geld keine essentielle Rolle spielt, wohingegen bei einer Geldwirtschaft jede Transaktion mit Geld abgewickelt wird. Grundlegend ist es deshalb wichtig zu kl{\"a}ren, ob eine Theorie, die Geld miteinschließt, zu anderen Schlussfolgerungen kommt als eine Theorie, die Geld außen vor l{\"a}sst. Ausgehend von dieser Problemstellung stelle ich im zweiten Kapitel die Schlussfolgerungen aus der g{\"u}terwirtschaftlichen Logik des Finanzsystems - modelliert durch die Loanable Funds-Theorie - der geldwirtschaftlichen Logik gegen{\"u}ber. Im Anschluss an die {\"U}berpr{\"u}fung der Schlussfolgerungen beschreibe ich drei Theorien {\"u}ber Banken. Hierbei beschreibt die sog. endogene Geldsch{\"o}fpungstheorie, in der die Zentralbanken die Kreditvergabe der Banken durch Preise steuern, unsere Welt am besten. Die endogene Geldsch{\"o}pfungstheorie ist die Basis f{\"u}r das theoretische Modell im dritten Kapitel. In diesem Modell handeln die Banken nach einem Gewinnmaximierungskalk{\"u}l, wobei die Ertr{\"a}ge aus dem Kreditgesch{\"a}ft erzielt werden und Kosten des Kreditausfallrisikos sowie Kosten durch die Refinanzierung (inklusive regulatorischer Vorschriften) enstehen. Hieraus leitet sich das Kreditangebot ab, das auf dem Kreditmarkt auf die Kreditnachfrage trifft. Die Kreditnachfrage wird durch die Kreditnehmer bestimmt, die f{\"u}r Konsumzwecke bzw. Investitionen Kredite bei Banken aufnehmen. Aus dem Zusammenspiel von Kreditangebot und Kreditnachfrage ergibt sich der gleichgewichtige Kreditzins sowie das gleichgewichtige Kreditvolumen, das Banken an Nichtbanken vergeben. Die Angebots- und Nachfrageseite, die auf dem Kreditmarkt miteinander interagieren, werden ausgehend vom theoretischen Modell empirisch f{\"u}r Deutschland im Zeitraum von 1999-2014 mit Hilfe eines Ungleichgewichtsmodells gesch{\"a}tzt, wobei sich zeigt, dass die Determinanten aus dem theoretischen Modell statistisch signifikant sind. Aufbauend auf dem theoretischen Bankenmodell wird das Modell im vierten Kapitel um den Bondmarkt erweitert. Der Bankenkredit- und der Bondmarkt sind im Gegensatz zur Beschreibung in der g{\"u}terwirtschaftlichen Analyse fundamental unterschiedlich. Zum Einen schaffen Banken Geld gem{\"a}ß der endogenen Geldsch{\"o}pfungstheorie. Sobald das Geld im Umlauf ist, k{\"o}nnen Nichtbanken dieses Geld umverteilen, indem sie es entweder f{\"u}r den G{\"u}terkauf verwenden oder l{\"a}ngerfristig ausleihen. Aufgrund des Fokusses auf das Finanzsystem in dieser Dissertation wird der Fall betrachtet, in dem Geld l{\"a}ngerfristig ausgeliehen wird. Das Motiv der Anbieter auf dem Bondmarkt, d.h. derjenigen, die Geld verleihen m{\"o}chten, ist {\"a}hnlich wie bei Banken getrieben von der Gewinnmaximierung. Ertr{\"a}ge k{\"o}nnen die Anbieter durch die Zinsen auf Bonds erwirtschaften. Kosten entstehen durch die Opportunit{\"a}tskosten der Geldhaltung als Depositen, den Kreditausfall des Schuldners sowie Kursverluste aufgrund von Zinsver{\"a}nderungen. Die geschilderte Logik basiert auf der Idee, dass Banken Geld schaffen, d.h. Originatoren von Geld sind, und das Geld auf dem Bondmarkt umverteilt wird und somit mehrfache Verwendung findet. Die beiden M{\"a}rkte sind sowohl angebots- als auch nachfrageseitig miteinander verkn{\"u}pft. Zum Einen refinanzieren sich Banken auf dem Bondmarkt, um die Fristentransformation, die durch die Kreditvergabe ensteht, zu reduzieren. Des Weiteren haben Kreditnachfrager die M{\"o}glichkeit, entweder Bankkredite oder Kredite auf dem Bondmarkt nachzufragen. Nach der theoretischen Darstellung des Finanzsystems bestehend aus dem Banken- und Bondmarkt folgt im f{\"u}nften Kapitel die Anwendung des Modells bei Quantitative Easing. Hier ist festzustellen, dass Quantitative Easing bereits bei der Ank{\"u}ndigung der Zentralbank das Verhalten der Marktakteure beeinflusst. Die vier großen Zentralbanken (Bank of Japan, Bank of England, Federal Reserve Bank und Europ{\"a}ische Zentralbank) haben aufgrund der anhaltenden Rezession und der bereits niedrigen kurzfristigen Zinsen das unkonventionelle Instrument des Aufkaufs von Anleihen angewandt. Im theoretischen Modell beeinflusst die Zentralbank bereits durch die Ank{\"u}ndigung die Akteuere auf dem Bondmarkt, sodass es zu sinkenden Risikopr{\"a}mien, da die Zentralbank als sog. 'lender of confidence' auftritt, zu (zumindest kurzfristig) sinkenden Zinserwartungen sowie insgesamt zu sinkenden langfristigen Zinsen kommt. Diese drei Hypothesen werden anhand empirischer Methoden f{\"u}r die Eurozone {\"u}berpr{\"u}ft.}, language = {en} } @phdthesis{Pennington2018, author = {Pennington, Laura Sophie}, title = {The role of Cadherin-13 in serotonergic neurons during different murine developmental stages}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-161331}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Abstract Background: Attention-deficit/ hyperactivity disorder (ADHD) ranges among the most common neurodevelopmental disorders worldwide with a prevalence of 3-12\% in childhood and 1-5\% for adults. Over the last decade extensive genetic research has been conducted in order to determine its causative genetic factors. None of the so far identified susceptibility genes, however, could explain the estimated ADHD heritability of 76\%. In this thesis one of the most promising candidates -Cadherin 13 (Cdh13) - was examined in terms of its influence on the central serotonergic (5-HT) system. In addition to that, the Cdh13 protein distribution pattern was analysed over time. Methods: The developing serotonergic system was compared over three embryonic and postnatal stages (E13.5, E17.5 and P7) in different Cdh13 genotypes (WT, HZ and KO) using immunohistochemistry and various double staining protocols. Results: The raphe nuclei of the 5-HT system develop in spite of Cdh13 absence and show a comparable mature constellation. The cells in the KO, however, are slightly more scattered than in the WT. Furthermore the dynamics of their formation is altered, with a transient delay in migration at E13.5. In early developmental stages the total amount of serotonergic cells is reduced in KO and HZ, though their proportional distribution to the raphe nuclei stays constant. Strikingly, at P7 the absolute numbers are comparable again. Concerning the Cdh13 protein, it shows high concentrations on fibres running through hindbrain and midbrain areas at E13.5. This, however, changes over time, and it becomes more evenly spread until P7. Furthermore, its presence in serotonergic cells could be visualised using confocal microscopy. Since the described pattern is only in parts congruent to the localisation of serotonergic neurons, it is most likely that Cdh13 is present in other developing neurotransmitter systems, such as the dopaminergic one, as well. Conclusion: It could be proven that Cdh13 is expressed in serotonergic cells and that its knockout does affect the developing serotonergic system to some degree. Its absence, however, only slightly and transiently affects the measured parameters of serotonergic system development, indicating a possible compensation of CDH13 function by other molecules in the case of Cdh13 deficiency. In addition further indicators could be found for an influence of Cdh13 on outgrowth and path finding of neuronal processes.}, subject = {Cadherine}, language = {en} } @phdthesis{Scheuermeyer2018, author = {Scheuermeyer, Philipp}, title = {Macroeconomic Consequences of Income Inequality: Evidence from Panel Data Econometrics}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-161452}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Within three self-contained chapters, this dissertation provides new insights into the macroeconomic consequences of income inequality from a global perspective. Following an introduction, which summarizes the main findings and offers a brief overview of trends in income distribution, Chapter 2 evaluates the relationship between the labor share of income and the evolution of aggregate demand. Chapter 3 analyzes the link between income inequality and aggregate saving; and Chapter 4 directly estimates the effect of inequality and public redistribution on economic growth.}, subject = {Panelanalyse}, language = {en} } @phdthesis{Aufmkolk2018, author = {Aufmkolk, Sarah}, title = {Super-Resolution Microscopy of Synaptic Proteins}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-151976}, school = {Universit{\"a}t W{\"u}rzburg}, pages = {X, 97}, year = {2018}, abstract = {The interaction of synaptic proteins orchestrate the function of one of the most complex organs, the brain. The multitude of molecular elements influencing neurological correlations makes imaging processes complicated since conventional fluorescence microscopy methods are unable to resolve structures beyond the diffraction-limit. The implementation of super-resolution fluorescence microscopy into the field of neuroscience allows the visualisation of the fine details of neural connectivity. The key element of my thesis is the super-resolution technique dSTORM (direct Stochastic Optical Reconstruction Microscopy) and its optimisation as a multi-colour approach. Capturing more than one target, I aim to unravel the distribution of synaptic proteins with nanometer precision and set them into a structural and quantitative context with one another. Therefore dSTORM specific protocols are optimized to serve the peculiarities of particular neural samples. In one project the brain derived neurotrophic factor (BDNF) is investigated in primary, hippocampal neurons. With a precision beyond 15 nm, preand post-synaptic sites can be identified by staining the active zone proteins bassoon and homer. As a result, hallmarks of mature synapses can be exhibited. The single molecule sensitivity of dSTORM enables the measurement of endogenous BDNF and locates BDNF granules aligned with glutamatergic pre-synapses. This data proofs that hippocampal neurons are capable of enriching BDNF within the mature glutamatergic pre-synapse, possibly influencing synaptic plasticity. The distribution of the metabotropic glutamate receptor mGlu4 is investigated in physiological brain slices enabling the analysis of the receptor in its natural environment. With dual-colour dSTORM, the spatial arrangement of the mGlu4 receptor in the pre-synaptic sites of parallel fibres in the molecular layer of the mouse cerebellum is visualized, as well as a four to six-fold increase in the density of the receptor in the active zone compared to the nearby environment. Prior functional measurements show that metabotropic glutamate receptors influence voltage-gated calcium channels and proteins that are involved in synaptic vesicle priming. Corresponding dSTORM data indeed suggests that a subset of the mGlu4 receptor is correlated with the voltage-gated calcium channel Cav2.1 on distances around 60 nm. These results are based on the improvement of the direct analysis of localisation data. Tools like coordinated based correlation analysis and nearest neighbour analysis of clusters centroids are used complementary to map protein connections of the synapse. Limits and possible improvements of these tools are discussed to foster the quantitative analysis of single molecule localisation microscopy data. Performing super-resolution microscopy on complex samples like brain slices benefits from a maximised field of view in combination with the visualisation of more than two targets to set the protein of interest in a cellular context. This challenge served as a motivation to establish a workflow for correlated structured illumination microscopy (SIM) and dSTORM. The development of the visualisation software coSIdSTORM promotes the combination of these powerful super-resolution techniques even on separated setups. As an example, synapses in the cerebellum that are affiliated to the parallel fibres and the dendrites of the Purkinje cells are identified by SIM and the protein bassoon of those pre-synapses is visualised threedimensionally with nanoscopic precision by dSTORM. In this work I placed emphasis on the improvement of multi-colour super-resolution imaging and its analysing tools to enable the investigation of synaptic proteins. The unravelling of the structural arrangement of investigated proteins supports the building of a synapse model and therefore helps to understand the relation between structure and function in neural transmission processes.}, subject = {Hochaufl{\"o}sende Mikroskopie}, language = {en} } @phdthesis{HockSiew2018, author = {Hock Siew, Tan}, title = {Functional characterization of an acid-regulated sRNA in \(Helicobacter\) \(pylori\)}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-150671}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Low pH is the main environmental stress encountered by Helicobacter pylori in the human stomach. To ensure its survival under acidic conditions, this bacterium utilizes urease (encoded by the ureAB operon), a nickel-activated metalloenzyme, which cleaves urea into ammonia to buffer the periplasmic space. Expression of the ureAB operon is tightly regulated at the transcriptional level. Moreover, the urease activity is modulated post translationally via the activity of nickel-binding proteins such as HP1432 that act as nickel sponges to either sequester or release nickel depending on the pH. However, little is known how the levels of these nickel-binding proteins are regulated at the post-transcriptional level. Interestingly, more than 60 candidate small regulatory RNAs (sRNAs) have been identified in a differential RNA-seq approach in H. pylori strain 26695, suggesting an uncharacterized layer of post-transcriptional riboregulation in this pathogen. sRNAs control their trans- or cis- encoded targets by direct binding. Many of the characterized sRNAs are expressed in response to specific environmental cues and are ideal candidates to confer post-transcriptional regulation under different growth conditions. This study demonstrates that a small RNA termed ArsZ (Acid Responsive sRNA Z) and its target HP1432 constitute yet another level of urease regulation. In-vitro and in-vivo experiments show that ArsZ interacts with the ribosome binding site (RBS) of HP1432 mRNA, effectively repressing translation of HP1432. During acid adaptation, the acid-responsive ArsRS two-component system represses expression of ArsZ. ArsRS and ArsZ work in tandem to regulate expression of HP1432 via a coherent feedforward loop (FFL). ArsZ acts as a delay mechanism in this feedforward loop to ensure that HP1432 protein levels do not abruptly change upon transient pH drops encountered by the bacteria. ArsZ "fine-tunes" the dynamics of urease activity after pH shift presumably by altering nickel availability through post transcriptional control of HP1432 expression. Interestingly, after adaptation to acid stress, ArsZ indirectly activates the transcription of HP1432 and forms an incoherent FFL with ArsRS to regulate HP1432. This study identified a non-standard FFL in which ArsZ can participate directly or indirectly in two different network configurations depending on the state of acid stress adaptation. The importance of ArsZ in the acid response of H. pylori is further supported by bioinformatics analysis showing that the evolution of ArsZ is closely related to the emergence of modern H. pylori strains that globally infect humans. No homologs of arsZ were found in the non-pylori species of Helicobacter. Moreover, this study also demonstrates that the physiological role of a sRNA can be elucidated without the artificial overexpression of the respective sRNA, a method commonly used to characterize sRNAs. Coupled with time-course experiments, this approach allows the kinetics of ArsZ regulation to be studied under more native conditions. ArsZ is the first example of a trans-acting sRNA that regulates a nickel storage protein to modulate apo-urease maturation. These findings may have important implications in understanding the details of urease activation and hence the colonization capability of H. pylori, the only bacterial class I carcinogen to date (WHO, 1994).}, subject = {Small RNA}, language = {en} } @phdthesis{Mao2018, author = {Mao, Lujia}, title = {Transition Metal-Catalyzed Construction of Benzyl/Allyl sp\(^3\) and Vinyl/Allenyl sp\(^2\) C-B Bonds}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-154022}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Organoboron compounds, such as benzyl-, allyl-, allenyl-, vinyl-, and 2-boryl allyl-boronates, have been synthesized via metal-catalyzed borylations of sp3 C-O and C-H bonds. Thus, Cu-catalyzed borylations of alcohols and their derivatives provide benzyl-, allyl-, allenyl-, vinyl-, and 2-boryl allyl-boronates via nucleophilic substitution. The employment of Ti(OiPr)4 turns the OH moiety into a good leaving group ('OTi'). The products of Pd-catalyzed oxidative borylations of allylic C-H bonds of alkenes were isolated and purified, and their application in the one-pot synthesis of stereodefined homoallyl alcohols was also investigated. Chapter 2 presents a copper-catalyzed synthesis of benzyl-, allyl-, and allenyl-boronates from benzylic, allylic, and propargylic alcohols, respectively, employing a commercially available catalyst precursor, [Cu(CH3CN)4]2+[BF4-]2, and Xantphos as the ligand. The borylation of benzylic alcohols was carried out at 100 oC with 5-10 mol \% [Cu(CH3CN)4]2+[BF4-]2, which afforded benzylic boronates in 32\%-95\% yields. With 10 mol \% [Cu(CH3CN)4]2+[BF4-]2, allylic boronates were provided in 53\%-89\% yields from the borylation of allylic alcohols at 60 or 100 oC. Secondary allylboronates were prepared in 72\%-84\% yields from the borylation of primary allylic alcohols, which also suggests that a nucleophilic substitution pathway is involved in this reaction. Allenylboronates were also synthesized in 72\%-89\% yields from the borylation of propargylic alcohols at 40 or 60 oC. This methodology can be extended to borylation of benzylic and allylic acetates. This protocol exhibits broad reaction scope (40 examples) and high efficiency (up to 95\% yield) under mild conditions, including the preparation of secondary allylic boronates. Preliminary mechanistic studies suggest that nucleophilic substitution is involved in this reaction. Chapter 3 reports an efficient methodology for the synthesis of vinyl-, allyl-, and (E)-2-boryl allylboronates from propargylic alcohols via copper-catalyzed borylation reactions under mild conditions. In the presence of a commercially available catalyst precursor (Cu(OAc)2 or Cu(acac)2) and ligand (Xantphos), the reaction affords the desired products in up to 92\% yield with a broad substrate scope (43 examples). Vinylboronates were synthesized in 50\%-83\% yields via Cu-catalyzed hydroboration of mono-substituted propargylic alcohols. With 1,1-disubstituted propargylic alcohols as the starting materials and Cu(OAc)2 as the catalyst precursor, a variety of allylboronates were synthesized in 44\%-83\% yields. The (E)-2-boryl allylboronates were synthesized in 54\%-92\% yields via the Cu-catalyzed diboration of propargylic alcohols. The stereoselectivity is different from the Pd(dba)2-catalyzed diboration of allenes that provided (Z)-2-boryl allylboronates predominantly. The isolation of an allenyl boronate as the reaction intermediate suggests that an SN2'-type reaction, followed by borylcupration, is involved in the mechanism of the diboration of propargylic alcohols. In chapter 4, a Pd-catalyzed allylic C-H borylation of alkenes is reported. The transformation exhibits high regioselectivity with a variety of linear alkenes, employing a Pd-pincer complex as the catalyst precursor, and the allylic boronate products were isolated and purified. This protocol can also be extended to one-pot carbonyl allylation reactions to provide homoallyl alcohols efficiently. An interesting mechanistic feature is that the reaction proceeds via a Pd(II)/Pd(IV) catalytic cycle. Formation of the Pd(IV) intermediate occurs by a unique combination of an NCNpincer complex and application of F-TEDA-BF4 as the oxidant. An important novelty of the present C-H borylation reaction is that all allyl-Bpin products can be isolated with usually high yields. This is probably a consequence of the application of the NCN-pincer complex as catalyst, which selectively catalyzes C-B bond formation avoiding subsequent C-B bond cleavage based side-reactions}, subject = {{\"U}bergangsmetall}, language = {en} } @phdthesis{Koellner2018, author = {K{\"o}llner, Sebastian}, title = {Essays on trade, inequality, and redistribution}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-152471}, school = {Universit{\"a}t W{\"u}rzburg}, pages = {203}, year = {2018}, abstract = {Die vorliegende Dissertation besch{\"a}ftigt sich mit den Auswirkungen der Globalisierung auf den Arbeitsmarkt sowie der Analyse der Determinanten staatlicher Umverteilung. Im Mittelpunkt steht dabei die empirische Auseinandersetzung mit diesen beiden Aspekten. Die in den letzten Jahrzehnten zu beobachtende {\"O}ffnung der M{\"a}rkte und die damit einhergehende steigende internationale Verflechtung wird in der Literatur neben dem technischen Fortschritt als Haupttreiber der wirtschaftlichen Entwicklung gesehen. In letzter Zeit jedoch ist die Globalisierung zunehmend in den Ruf geraten, verst{\"a}rkt negative Konsequenzen mit sich zu bringen, z.B. in Form h{\"o}herer Ungleichheit bzw. einer h{\"o}heren Volatilit{\"a}t der Besch{\"a}ftigung. Das zweite Kapitel untersucht den Einfluss der zunehmenden Importpenetration (in Form steigender importierter Vorprodukte) auf die Besch{\"a}ftigung im verarbeitenden Gewerbe in 12 OECD-Staaten. Die Ergebnisse deuten auf einen insgesamt leicht positiven Besch{\"a}ftigungseffekt der zunehmenden internationalen Verflechtung, wobei auf eine Vielzahl an zus{\"a}tzlichen Einflusskan{\"a}len, verschiedene Modellspezifikationen sowie unterschiedliche Maße der Importpenetration kontrolliert wird. In Abh{\"a}ngigkeit vom Ursprungsland der importierten Vorprodukte differieren die Arbeitsmarkteffekte jedoch deutlich. W{\"a}hrend Importe aus den alten EU-Mitgliedsstaaten komplement{\"a}r zur Industriebesch{\"a}ftigung in den beobachteten OECD-L{\"a}ndern wirken, kann eine substitutive Beziehung f{\"u}r importierte Vorprodukte aus China und den neuen EU-Mitgliedsstaaten beobachtet werden. Die Resultate unterscheiden sich f{\"u}r die einzelnen Volkswirtschaften zum Teil sp{\"u}rbar. Dar{\"u}ber hinaus wird deutlich, dass die hierarchische Struktur der Daten nur eine untergeordnete Rolle spielt, w{\"a}hrend die Ber{\"u}cksichtigung von Endogenit{\"a}tsproblemen die Ergebnisse unber{\"u}hrt l{\"a}sst. Die ambivalenten Folgen der Globalisierung auf die Besch{\"a}ftigung verst{\"a}rken die Nachfrage nach dem Sozialstaat. Das folgende Kapitel analysiert daher die Bestimmungsgr{\"u}nde staatlicher Umverteilung f{\"u}r ein breites L{\"a}ndersample. Dabei geht es um die Frage, an welchen Faktoren sich staatliche Entscheidungstr{\"a}ger orientieren, wenn sie umverteilende Maßnahmen durchf{\"u}hren. Die Meltzer-Richard-Hypothese kann empirisch best{\"a}tigt werden, wobei der Einfluss abh{\"a}ngig vom Entwicklungsstand der L{\"a}nder ist. In reichen Nationen mit ausgepr{\"a}gten politischen Rechten ist der Zusammenhang zwischen Ungleichheit und Umverteilung sehr robust, wohingegen dies f{\"u}r {\"a}rmere L{\"a}nder mit weniger entwickelten politischen Rechten in weitaus geringerem Maße gilt. Dar{\"u}ber hinaus ist auch die Form der Einkommensverteilung entscheidend f{\"u}r die H{\"o}he der staatlichen Umverteilung. W{\"a}hrend die Mittelschicht ein Mehr an Umverteilungsmaßnahmen bef{\"u}rwortet, {\"u}ben Top-Einkommensbezieher ebenfalls einen signifikanten, jedoch negativen Einfluss auf die H{\"o}he der staatlichen Umverteilung aus. Niedrigeinkommensbezieher als eigentliche Hauptprofiteure von Umverteilungsmaßnahmen spielen hingegen keine zentrale Rolle im Entscheidungskalk{\"u}l der Politiker. Die Ergebnisse weisen zudem darauf hin, dass die H{\"o}he der gef{\"u}hlten Ungleichheit der Individuen f{\"u}r die Nachfrage nach Umverteilung wichtiger ist als die tats{\"a}chliche H{\"o}he der Ungleichheit. Im n{\"a}chsten Kapitel wird der im vorangegangenen Kapitel aufgestellte Untersuchungsrahmen um kulturelle Aspekte erweitert. Hintergrund ist der in den letzten Jahren zu beobachtende Anstieg von Migrationsstr{\"o}men und dessen m{\"o}gliche Auswirkungen auf die Sozialstaaten in den Aufnahmel{\"a}ndern. Dieses Kapitel analysiert die Auswirkungen von Kultur und ethnischer, religi{\"o}ser sowie kultureller Diversit{\"a}t auf die H{\"o}he der staatlichen Umverteilung f{\"u}r ein breites L{\"a}ndersample. Ausgangspunkt f{\"u}r die Messung von Kultur sind die Kulturdimensionen nach Hofstede, die um zus{\"a}tzliche kulturelle Indikatoren sowie verschiedene Maße von Diversit{\"a}t erweitert werden. Um kulturelle Charakteristika von institutionellen Gegebenheiten zu trennen, werden sowohl regionale als auch externe Instrumente verwendet. Die Ergebnisse deuten auf einen ambivalenten Einfluss von Kultur auf die H{\"o}he staatlicher Umverteilung. W{\"a}hrend in L{\"a}ndern mit einem hohen Maß an Individualismus und gegenseitigem Vertrauen sowie geringen famili{\"a}ren Bindungen mehr umverteilt wird, kann das Gegenteil f{\"u}r L{\"a}nder mit hoher Machtdistanz und der Vorstellung, dass pers{\"o}nlicher Erfolg das Ergebnis harter Arbeit ist, beobachtet werden. Die empirischen Befunde weisen zudem auf einen negativen, jedoch nicht-linearen Zusammenhang zwischen Umverteilung und Diversit{\"a}t.}, subject = {Globalisierung}, language = {en} } @phdthesis{Monjezi2018, author = {Monjezi, Razieh}, title = {Engineering of chimeric antigen receptor T cells with enhanced therapeutic index in cancer immunotherapy using non-viral gene transfer and genome editing}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-152521}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {The advances in genetic engineering have enabled us to confer T cells new desired functions or delete their specific undesired endogenous properties for improving their antitumor function. Due to their efficient gene delivery, viral vectors have been successfully used in T-cell engineering to provide gene transfer medicinal products for the treatment of human disease. One example is adoptive cell therapy with T cells that were genetically modified with gamma-retroviral and lentiviral (LV) delivery vectors to express a CD19-specific chimeric antigen receptor (CAR) for cancer treatment. This therapeutic approach has shown remarkable results against B-cell malignancies in pilot clinical trials. Consequently, there is a strong desire to make CAR T cell therapy scalable and globally available to patients. However, there are persistent concerns and limitations with the use of viral vectors for CAR T cell generation with regard to safety, cost and scale of vector production. In order to address these concerns, we aimed to improve non-viral gene transfer and genome editing tools as an effective, safe and broadly applicable alternative to viral delivery methods for T-cell engineering. In the first part of the study, we engineered CAR T cells through non-viral Sleeping Beauty (SB) transposition of CAR genes from minimalistic DNA vectors called minicircles rather than conventional SB plasmids. This novel approach dramatically increased stable gene transfer rate and cell viability and resulted in higher yield of CAR+ T cells without the need of long ex vivo expansion to generate therapeutic doses of CAR+ T cells. Importantly, CD19-CAR T cells modified by MC-based SB transposition were equally effective as LV transduced CD19-CAR T cells in vitro and in a murine xenograft model (NSG/Raji-ffLuc), where a single administration of CD8+ and CD4+ CAR T cells led to complete eradication of lymphoma and memory formation of CAR T cells after lymphoma clearance. To characterize the biosafety profile of the CAR T cell products, we did the most comprehensive genomic insertion site analysis performed so far in T cells modified with SB. The data showed a close-to-random integration profile of the SB transposon with a higher number of insertions in genomic safe harbors compared to LV integrants. We developed a droplet digital PCR assay that enables rapid determination of CAR copy numbers for clinical applications. In the second part of the study, we ablated expression of PD-1, a checkpoint and negative regulator of T cell function to improve the therapeutic index of CAR T cells. This was accomplished using non-viral CRISPR/Cas9 via pre-assemble Cas9 protein and in vitro-transcribed sgRNA (Cas9 RNP). Finally, we combined our developed Cas9 RNP tool with CAR transposition from MC vectors into a single-step protocol and successfully generated PD-1 knockout CAR+ T cells. Based on the promising results achieved from antibody-mediated PD-1 blockade in the treatment of hematological and solid tumors, we are confident that PD-1 knockout CAR T cells enhance the potency of CAR T cell therapies for treatment of cancers without the side effects of antibody-based therapies. In conclusion, we provide a novel platform for virus-free genetic engineering of CAR T cells that can be broadly applied in T-cell cancer therapy. The high level of gene transfer rate and efficient genome editing, superior safety profile as well as ease-of-handling and production of non-viral MC vectors and Cas9 RNP position our developed non-viral strategies to become preferred approaches in advanced cellular and gene-therapy.}, subject = {Krebs }, language = {en} } @phdthesis{Jones2018, author = {Jones, Gabriel}, title = {Bioinspired FGF-2 delivery for pharmaceutical application}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-153179}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {In resent years the rate of biologics (proteins, cytokines and growth-factors) as newly registered drugs has steadily risen. The greatest challenge for pharmaceutical biologics poses its arrival at the desired target location due to e.g. proteolytic and pH dependent degradation, plasma protein binding, insolubility etc. Therefore, advanced drug delivery systems, where biologics are site directed immobilized to carriers mimicking endogenous storage sites such as the extra cellular matrix can enormously assist the application and consequently the release of exogenous administered pharmaceutical biologics. We have resorted to the fibroblast growth factor 2/ heparansulfate/ fibroblast growth factor bindingprotein 1 system as a model. Phase I deals with the selection and subcloning of a wild type murine FGF-2 construct into the bacterial pHis-Trx vector system for high yields of expression and fast, feasible purification measurements. This first step enables the provision of mFGF-2, which plays a pivotal part as a growth factor in the wound healing process as well as the vascularization of tumors, for future investigations. Therefore, the correct expression of mFGF-2 was monitored via MALDI-MS and SDS-PAGE, whereas the proper folding of the tertiary beta-trefoil structure was assessed by fluorescence spectroscopy. The MTT assay allowed us to ensure that the bioactivity was comparable to sourced FGF-2. In the last step, the purity; a requirement for future binding- and protein-protein interaction assays was monitored chromatographically (RP-HPLC). In addition, a formulation for freeze-drying was developed to ensure protein stability and integrity over a period of 60 days. Altogether, the bacterial expression and purification proved to be suitable, leading to bioactive and stable production of mFGF-2. In Phase II the expression, purification and characterization of FGFBP1, as the other key partner in the FGF-2/ HS/ FGFBP1 system is detailed. As FGFBP1 exhibits a complex tertiary structure, comprised of five highly conserved disulfide bonds and presumably multiple glycosylation sites, a eukaryotic expression was used. Human embryonic kidney cells (HEK 293F) as suspension cells were transiently transfected with DNA-PEI complexes, leading to expression of Fc-tagged murine FGFBP1. Different PEI to DNA ratios and expression durations were investigated for optimal expression yields, which were confirmed by western blot analysis and SDS-PAGE. LC-MS/MS analysis of trypsin and elastase digested FGFBP1 gave first insights of the three O-glycosylation sites. Furthermore, the binding protein was modified by inserting a His6-tag between the Fc-tag (for purification) and the binding protein itself to enable later complexation with radioactive 99mTc as radio ligand to track bio distribution of administered FGFBP1 in mice. Overall, expression, purification and characterization of mFGFBP1 variants were successful with a minor draw back of instability of the tag free binding protein. Combining the insights and results of expressed FGF-2 as well as FGFBP1 directed us to the investigation of the interaction of each partner in the FGF-2/ HS/ FGFBP1 system as Phase III. Thermodynamic behavior of FGF-2 and low molecular weight heparin (enoxaparin), as a surrogate for HS, under physiological conditions (pH 7.4) and pathophysiological conditions, similar to hypoxic, tumorous conditions (acidic pH) were monitored by means of isothermal titration calorimetry. Buffer types, as well as the pH influences binding parameters such as stoichiometry (n), enthalpy (ΔH) and to some extent the dissociation constant (KD). These findings paved the way for kinetic binding investigations, which were performed by surface plasmon resonance assays. For the first time the KD of full length FGFBP1 and FGF-2 was measured. Furthermore the binding behavior of FGF-2 to FGFBP1 in the presence of various heparin concentrations suggest a kinetic driven release of bound FGF-2 by its chaperone FGFBP1. Having gathered multiple data on the FGF-2 /HS /FGFBP1 system mainly in solution, our next step in Phase IV was the development of a test system for immobilized proteins. With the necessity to better understand and monitor the cellular effects of immobilized growth factors, we decorated glass slides in a site-specific manner with an RGD-peptide for adhesion of cells and via the copper(I)-catalyzed-azide-alkyne cycloaddition (CuAAC) a fluorescent dye (a precursor for modified proteins for click chemistry). Human osteosarcoma cells were able to grow an the slides and the fluorescence dye was immobilized in a biocompatible way allowing future thorough bioactivity assay such as MTT-assays and phospho-ERK-assays of immobilized growth factors.}, subject = {Fibroblastenwachstumsfaktor}, language = {en} } @phdthesis{PonceGarcia2018, author = {Ponce Garcia, Irene Paola}, title = {Strategies for optimizing dynamic MRI}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-162622}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {In Magnetic Resonance Imaging (MRI), acquisition of dynamic data may be highly complex due to rapid changes occurred in the object to be imaged. For clinical diagnostic, dynamic MR images require both high spatial and temporal resolution. The speed in the acquisition is a crucial factor to capture optimally dynamics of the objects to obtain accurate diagnosis. In the 90's, partially parallel MRI (pMRI) has been introduced to shorten scan times reducing the amount of acquired data. These approaches use multi-receiver coil arrays to acquire independently and simultaneously the data. Reduction in the amount of acquired data results in images with aliasing artifacts. Dedicated methods as such Sensitivity Encoding (SENSE) and Generalized Autocalibrating Partially Parallel Acquisition (GRAPPA) were the basis of a series of algorithms in pMRI. Nevertheless, pMRI methods require extra spatial or temporal information in order to optimally reconstruct the data. This information is typically obtained by an extra scan or embedded in the accelerated acquisition applying a variable density acquisition scheme. In this work, we were able to reduce or totally eliminate the acquisition of the training data for kt-SENSE and kt-PCA algorithms obtaining accurate reconstructions with high temporal fidelity. For dynamic data acquired in an interleaved fashion, the temporal average of accelerated data can generate an artifact-free image used to estimate the coil sensitivity maps avoiding the need of extra acquisitions. However, this temporal average contains errors from aliased components, which may lead to signal nulls along the spectra of reconstructions when methods like kt-SENSE are applied. The use of a GRAPPA filter applied to the temporal average reduces these errors and subsequently may reduce the null components in the reconstructed data. In this thesis the effect of using temporal averages from radial data was investigated. Non-periodic artifacts performed by undersampling radial data allow a more accurate estimation of the true temporal average and thereby avoiding undesirable temporal filtering in the reconstructed images. kt-SENSE exploits not only spatial coil sensitivity variations but also makes use of spatio-temporal correlations in order to separate the aliased signals. Spatio-temporal correlations in kt-SENSE are learnt using a training data set, which consists of several central k-space lines acquired in a separate scan. The scan of these extra lines results in longer acquisition times even for low resolution images. It was demonstrate that limited spatial resolution of training data set may lead to temporal filtering effects (or temporal blurring) in the reconstructed data. In this thesis, the auto-calibration for kt-SENSE was proposed and its feasibility was tested in order to completely eliminate the acquisition of training data. The application of a prior TSENSE reconstruction produces the training data set for the kt-SENSE algorithm. These training data have full spatial resolution. Furthermore, it was demonstrated that the proposed auto-calibrating method reduces significantly temporal filtering in the reconstructed images compared to conventional kt-SENSE reconstructions employing low resolution training images. However, the performance of auto-calibrating kt-SENSE is affected by the Signal-to-Noise Ratio (SNR) of the first pass reconstructions that propagates to the final reconstructions. Another dedicated method used in dynamic MRI applications is kt-PCA, that was first proposed for the reconstruction of MR cardiac data. In this thesis, kt-PCA was employed for the generation of spatially resolved M0, T1 and T2 maps from a single accelerated IRTrueFISP or IR-Snapshot FLASH measurement. In contrast to cardiac dynamic data, MR relaxometry experiments exhibit signal at all temporal frequencies, which makes their reconstruction more challenging. However, since relaxometry measurements can be represented by only few parameters, the use of few principal components (PC) in the kt-PCA algorithm can significantly simplify the reconstruction. Furthermore, it was found that due to high redundancy in relaxometry data, PCA can efficiently extract the required information from just a single line of training data. It has been demonstrated in this thesis that auto-calibrating kt-SENSE is able to obtain high temporal fidelity dynamic cardiac reconstructions from moderate accelerated data avoiding the extra acquisition of training data. Additionally, kt-PCA has been proved to be a suitable method for the reconstruction of highly accelerated MR relaxometry data. Furthermore, a single central training line is necessary to obtain accurate reconstructions. Both reconstruction methods are promising for the optimization of training data acquisition and seem to be feasible for several clinical applications.}, subject = {Kernspintomografie}, language = {en} } @phdthesis{Hochleitner2018, author = {Hochleitner, Gernot}, title = {Advancing melt electrospinning writing for fabrication of biomimetic structures}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-162197}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {In order to mimic the extracellular matrix for tissue engineering, recent research approaches often involve 3D printing or electrospinning of fibres to scaffolds as cell carrier material. Within this thesis, a micron fibre printing process, called melt electrospinning writing (MEW), combining both additive manufacturing and electrospinning, has been investigated and improved. Thus, a unique device was developed for accurate process control and manufacturing of high quality constructs. Thereby, different studies could be conducted in order to understand the electrohydrodynamic printing behaviour of different medically relevant thermoplastics as well as to characterise the influence of MEW on the resulting scaffold performance. For reproducible scaffold printing, a commonly occurring processing instability was investigated and defined as pulsing, or in extreme cases as long beading. Here, processing analysis could be performed with the aim to overcome those instabilities and prevent the resulting manufacturing issues. Two different biocompatible polymers were utilised for this study: poly(ε-caprolactone) (PCL) as the only material available for MEW until then and poly(2-ethyl-2-oxazoline) for the first time. A hypothesis including the dependency of pulsing regarding involved mass flows regulated by the feeding pressure and the electrical field strength could be presented. Further, a guide via fibre diameter quantification was established to assess and accomplish high quality printing of scaffolds for subsequent research tasks. By following a combined approach including small sized spinnerets, small flow rates and high field strengths, PCL fibres with submicron-sized fibre diameters (f{\O} = 817 ± 165 nm) were deposited to defined scaffolds. The resulting material characteristics could be investigated regarding molecular orientation and morphological aspects. Thereby, an alignment and isotropic crystallinity was observed that can be attributed to the distinct acceleration of the solidifying jet in the electrical field and by the collector uptake. Resulting submicron fibres formed accurate but mechanically sensitive structures requiring further preparation for a suitable use in cell biology. To overcome this handling issue, a coating procedure, by using hydrophilic and cross-linkable star-shaped molecules for preparing fibre adhesive but cell repellent collector surfaces, was used. Printing PCL fibre patterns below the critical translation speed (CTS) revealed the opportunity to manufacture sinusoidal shaped fibres analogously to those observed using purely viscous fluids falling on a moving belt. No significant influence of the high voltage field during MEW processing could be observed on the buckling phenomenon. A study on the sinusoidal geometry revealed increasing peak-to-peak values and decreasing wavelengths as a function of decreasing collector speeds sc between CTS > sc ≥ 2/3 CTS independent of feeding pressures. Resulting scaffolds printed at 100 \%, 90 \%, 80 \% and 70 \% of CTS exhibited significantly different tensile properties, foremost regarding Young's moduli (E = 42 ± 7 MPa to 173 ± 22 MPa at 1 - 3 \% strain). As known from literature, a changed morphology and mechanical environment can impact cell performance substantially leading to a new opportunity of tailoring TE scaffolds. Further, poly(L-lactide-co-ε-caprolactone-co-acryloyl carbonate) as well as poly(ε-caprolactone-co-acryloyl carbonate) (PCLAC) copolymers could be used for MEW printing. Those exhibit the opportunity for UV-initiated radical cross-linking in a post-processing step leading to significantly increased mechanical characteristics. Here, single fibres of the polymer composed of 90 mol.\% CL and 10 mol.\% AC showed a considerable maximum tensile strength of σmax = 53 ± 16 MPa. Furthermore, sinusoidal meanders made of PCLAC yielded a specific tensile stress-strain characteristic mimicking the qualitative behaviour of tendons or ligaments. Cell viability by L929 murine fibroblasts and live/dead staining with human mesenchymal stem cells revealed a promising biomaterial behaviour pointing out MEW printed PCLAC scaffolds as promising choice for medical repair of load-bearing soft tissue. Indeed, one apparent drawback, the small throughput similar to other AM methods, may still prevent MEW's industrial application yet. However, ongoing research focusses on enlargement of manufacturing speed with the clear perspective of relevant improvement. Thereby, the utilisation of large spinneret sizes may enable printing of high volume rates, while downsizing the resulting fibre diameter via electrical field and mechanical stretching by the collector uptake. Using this approach, limitations of FDM by small nozzle sizes could be overcome. Thinking visionary, such printing devices could be placed in hospitals for patient-specific printing-on-demand therapies one day. Taking the evolved high deposition precision combined with the unique small fibre diameter sizes into account, technical processing of high performance membranes, filters or functional surface finishes also stands to reason.}, subject = {scaffold}, language = {en} } @phdthesis{Halboth2018, author = {Halboth, Florian}, title = {Building behavior and nest climate control in leaf-cutting ants: How environmental cues affect the building responses of workers of \(Atta\) \(vollenweideri\)}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-161701}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {The present work investigates the influence of environmental stimuli on the building behavior of workers of the leaf-cutting ant Atta vollenweideri. It focuses on cues related to the airflow-driven ventilation of their giant underground nests, i.e., air movements and their direction, carbon dioxide concentrations and humidity levels of the nest air. First, it is shown that workers are able to use airflow and its direction as learned orientation cue by performing learning experiments with individual foragers using a classical conditioning paradigm. This ability is expected to allow workers to also navigate inside the nest tunnels using the prevailing airflow directions for orientation, for example during tasks related to nest construction and climate control. Furthermore, the influence of carbon dioxide on the digging behavior of workers is investigated. While elevated CO2 levels hardly affect the digging rate of the ants, workers prefer to excavate at locations with lower concentrations and avoid higher CO2 levels when given a choice. Under natural conditions, shifting their digging activity to soil layers containing lower carbon dioxide levels might help colonies to excavate new or to broaden existing nest openings, if the CO2 concentration in the underground rises. It is also shown that workers preferably transport excavated soil along tunnels containing high CO2 concentrations, when carbon dioxide levels in the underground are elevated as well. In addition, workers prefer to carry soil pellets along outflow tunnels instead of inflow tunnels, at least for high humidity levels of the air. The material transported along tunnels providing outflow of CO2-rich air might be used by workers for the construction of ventilation turrets on top of the nest mound, which is expected to promote the wind-induced ventilation and the removal of carbon dioxide from the underground. The climatic conditions inside the nest tunnels also influence the structural features of the turrets constructed by workers on top the nest. While airflow and humidity have no effect on turret structure, outflow of CO2-rich air from the nest causes workers to construct turrets with additional openings and increased aperture, potentially enhancing the airflow-driven gas exchanges within the nest. Finally, the effect of airflow and ventilation turrets on the gas exchanges in Atta vollenweideri nests is tested experimentally on a physical model of a small nest consisting of a single chamber and two nest tunnels. The carbon dioxide clearance rate from the underground was measured depending on both the presence of airflow in the nest and the structural features of the built turrets. Carbon dioxide is removed faster from the physical nest model when air moves through the nest, confirming the contribution of wind-induced flow inside the nest tunnels to the ventilation of Atta vollenweideri nests. In addition, turrets placed on top of one of the tunnel openings of the nest further enhance the CO2 clearance rate and the effect is positively correlated with turret aperture. Taken together, climatic variables like airflow, carbon dioxide and humidity levels strongly affect the building responses of Atta vollenweideri leaf-cutting ants. Workers use these environmental stimuli as orientation cue in the nest during tasks related to excavation, soil transport and turret construction. Although the effects of these building responses on the microclimatic conditions inside the nest remain elusive so far, the described behaviors are expected to allow ant colonies to restore and maintain a proper nest climate in the underground.}, subject = {Verhalten}, language = {en} } @phdthesis{Wannagat2018, author = {Wannagat, Wienke Charlotte}, title = {Cognitive Processes of Discourse Comprehension in Children and Adults - Comparisons between Written, Auditory, and Audiovisual Modes of Presentation -}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-162515}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {In drei Studien wurde untersucht, wie sich unterschiedliche Darbietungsformate (schriftlich, auditiv, audiovisuell (auditiv + Bilder) auf das Verst{\"a}ndnis semantisch identischer Inhalte auswirken. Dabei interessierte insbesondere der Entwicklungsverlauf von der ersten Klasse bis zum Erwachsenenalter. Dass sich Bilder f{\"o}rderlich auf die Verst{\"a}ndnisleistung auswirken k{\"o}nnen, gilt als gut untersucht (z.B. Carney \& Levin, 2002). Anders als viele bisherige Studien erfassen wir Textverstehen mit impliziten Maßen, die differenziertere R{\"u}ckschl{\"u}sse auf die, g{\"a}ngigen Theorien zufolge, zugrundeliegenden Prozesse zulassen: Textverstehen geht mit der Konstruktion von drei Ebenen mentaler Repr{\"a}sentationen einher (vgl. Kintsch, 1998). Weiterhin bedeutet erfolgreiches Textverstehen, eine auf lokaler und globaler Ebene koh{\"a}rente mentale Repr{\"a}sentation zu konstruieren (z.B. Schnotz \& Dutke, 2004). Mit einem Satz-Rekognitionstest (vgl. Schmalhofer \& Glavanov, 1986) untersuchten wir, ob sich das Ged{\"a}chtnis f{\"u}r die Textoberfl{\"a}che, die Textbasis und das Situationsmodell bei 103 8- und 10-J{\"a}hrigen zwischen schriftlicher, auditiver und audiovisueller (Studie 1) und bei 106 7-, 9- und 11-J{\"a}hrigen zwischen auditiver und audiovisueller Darbietung narrativer Texte (Studie 2) unterscheidet. Weiterhin (Studie 3) untersuchten wir mit 155 9- und 11-J{\"a}hrigen, inwieweit sich die F{\"a}higkeit der Inferenzbildung zur Herstellung lokaler und globaler Koh{\"a}renz zwischen schriftlicher, auditiver und audiovisueller Darbietung unterscheidet. Als Indikator dienten die Reaktionszeiten auf W{\"o}rter, die mit einem {\"u}ber (global)- oder untergeordneten (lokal) Protagonistenziel assoziiert sind. Insgesamt zeigte sich, dass Sch{\"u}ler bis zu einem Alter von 11 Jahren nicht nur die Textoberfl{\"a}che besser erinnern, sondern auch besser in der Lage sind ein Situationsmodell zu konstruieren, wenn einem Text Bilder beigef{\"u}gt sind. Dies zeigte sich sowohl im Vergleich mit auditiver als auch mit schriftlicher Darbietung. Bei Erwachsenen zeigte sich kein Effekt der Darbietungsform. Sowohl 9- als auch 11-J{\"a}hrigen gelingt außerdem die Herstellung globaler Koh{\"a}renz bei audiovisueller Darbietung besser als bei auditiver. Die schriftliche Darbietung zeigte sich im Vergleich zur auditiven sowohl im Hinblick auf lokale als auch auf globale Koh{\"a}renz {\"u}berlegen.}, subject = {Textverstehen}, language = {en} } @phdthesis{Albert2018, author = {Albert, Julian}, title = {Quantum Studies on Low-Dimensional Coupled Electron-Nuclear Dynamics}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-161512}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {In the context of quantum mechanical calculations, the properties of non-adiabatic coupling in a small system, the Shin-Metiu model, is investigated. The transition from adiabatic to non-adiabatic dynamics is elucidated in modifying the electron-nuclear interaction. This allows the comparison of weakly correlated electron-nuclear motion with the case where the strong correlations determine the dynamics. The studies of the model are extended to include spectroscopical transitions being present in two-dimensional and degenerate four-wave mixing spectroscopy. Furthermore, the quantum and classical time-evolution of the coupled motion in the complete electron-nuclear phase space is compared for the two coupling cases. Additionally, the numerically exact electron flux within the weak coupling case is compared to the Born-Oppenheimer treatment. In the last part of the thesis, the model is extended to two dimensions. The system then possesses potential energy surfaces which exhibit a typical 'Mexican hat'-like structure and a conical intersection in the adiabatic representation. Thus, it is possible to map properties of the system onto a vibronic coupling (Jahn-Teller) hamiltonian. Exact wave-packet propagations as well as nuclear wave-packet dynamics in the adiabatic and diabatic representation are performed.}, subject = {Theoretische Chemie}, language = {en} } @phdthesis{SchenkneeWolf2018, author = {Schenk [n{\´e}e Wolf], Mariela}, title = {Timing of wild bee emergence: mechanisms and fitness consequences}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-161565}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Solitary bees in seasonal environments have to align their life-cycles with favorable environmental conditions and resources. Therefore, a proper timing of their seasonal activity is highly fitness relevant. Most species in temperate environments use temperature as a trigger for the timing of their seasonal activity. Hence, global warming can disrupt mutualistic interactions between solitary bees and plants if increasing temperatures differently change the timing of interaction partners. The objective of this dissertation was to investigate the mechanisms of timing in spring-emerging solitary bees as well as the resulting fitness consequences if temporal mismatches with their host plants should occur. In my experiments, I focused on spring-emerging solitary bees of the genus Osmia and thereby mainly on O. cornuta and O. bicornis (in one study which is presented in Chapter IV, I additionally investigated a third species: O. brevicornis). Chapter II presents a study in which I investigated different triggers solitary bees are using to time their emergence in spring. In a climate chamber experiment I investigated the relationship between overwintering temperature, body size, body weight and emergence date. In addition, I developed a simple mechanistic model that allowed me to unite my different observations in a consistent framework. In combination with the empirical data, the model strongly suggests that solitary bees follow a strategic approach and emerge at a date that is most profitable for their individual fitness expectations. I have shown that this date is on the one hand temperature dependent as warmer overwintering temperatures increase the weight loss of bees during hibernation, which then advances their optimal emergence date to an earlier time point (due to an earlier benefit from the emergence event). On the other hand I have also shown that the optimal emergence date depends on the individual body size (or body weight) as bees adjust their emergence date accordingly. My data show that it is not enough to solely investigate temperature effects on the timing of bee emergence, but that we should also consider individual body conditions of solitary bees to understand the timing of bee emergence. In Chapter III, I present a study in which I investigated how exactly temperature determines the emergence date of solitary bees. Therefore, I tested several variants degree-day models to relate temperature time series to emergence data. The basic functioning of such degree-day models is that bees are said to finally emerge when a critical amount of degree-days is accumulated. I showed that bees accumulate degree-days only above a critical temperature value (~4°C in O. cornuta and ~7°C in O. bicornis) and only after the exceedance of a critical calendar date (~10th of March in O. cornuta and ~28th of March in O. bicornis). Such a critical calendar date, before which degree-days are not accumulated irrespective of the actual temperature, is in general less commonly used and, so far, it has only been included twice in a phenology model predicting bee emergence. Furthermore, I used this model to retrospectively predict the emergence dates of bees by applying the model to long-term temperature data which have been recorded by the regional climate station in W{\"u}rzburg. By doing so, the model estimated that over the last 63 years, bees emerged approximately 4 days earlier. In Chapter IV, I present a study in which I investigated how temporal mismatches in bee-plant interactions affect the fitness of solitary bees. Therefore, I performed an experiment with large flight cages serving as mesocosms. Inside these mesocosms, I manipulated the supply of blossoms to synchronize or desynchronize bee-plant interactions. In sum, I showed that even short temporal mismatches of three and six days in bee-plant interactions (with solitary bee emergence before flower occurrence) can cause severe fitness losses in solitary bees. Nonetheless, I detected different strategies by solitary bees to counteract impacts on their fitness after temporal mismatches. However, since these strategies may result in secondary fitness costs by a changed sex ratio or increased parasitism, I concluded that compensation strategies do not fully mitigate fitness losses of bees after short temporal mismatches with their food plants. In the event of further climate warming, fitness losses after temporal mismatches may not only exacerbate bee declines but may also reduce pollination services for later-flowering species and affect populations of animal-pollinated plants. In conclusion, I showed that spring-emerging solitary bees are susceptible to climate change as in response to warmer temperatures bees advance their phenology and show a decreased fitness state. As spring-emerging solitary bees not only consider overwintering temperature but also their individual body condition for adjusting emergence dates, this may explain differing responses to climate warming within and among bee populations which may also have consequences for bee-plant interactions and the persistence of bee populations under further climate warming. If in response to climate warming plants do not shift their phenologies according to the bees, bees may experience temporal mismatches with their host plants. As bees failed to show a single compensation strategy that was entirely successful in mitigating fitness consequences after temporal mismatches with their food plants, the resulting fitness consequences for spring-emerging solitary bees would be severe. Furthermore, I showed that spring-emerging solitary bees use a critical calendar date before which they generally do not commence the summation of degree-days irrespective of the actual temperature. I therefore suggest that further studies should also include the parameter of a critical calendar date into degree-day model predictions to increase the accuracy of model predictions for emergence dates in solitary bees. Although our retrospective prediction about the advance in bee emergence corresponds to the results of several studies on phenological trends of different plant species, we suggest that more research has to be done to assess the impacts of climate warming on the synchronization in bee-plant interactions more accurately.}, subject = {wild bees}, language = {en} } @phdthesis{Knauer2018, author = {Knauer, Kim}, title = {Vegetation Dynamics in West Africa - Spatio-temporal Data Fusion for the Monitoring of Agricultural Expansion}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-164776}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {West Africa is one of the fastest growing regions in the world with annual population growth rates of more than three percent for several countries. Since the 1950s, West Africa experienced a fivefold increase of inhabitants, from 71 to 353 million people in 2015 and it is expected that the region's population will continue to grow to almost 800 million people by the year 2050. This strong trend has and will have serious consequences for food security since agricultural productivity is still on a comparatively low level in most countries of West Africa. In order to compensate for this low productivity, an expansion of agricultural areas is rapidly progressing. The mapping and monitoring of agricultural areas in West Africa is a difficult task even on the basis of remote sensing. The small scale extensive farming practices with a low level of agricultural inputs and mechanization make the delineation of cultivated land from other land cover and land use (LULC) types highly challenging. In addition, the frequent cloud coverage in the region considerably decreases the availability of earth observation datasets. For the accurate mapping of agricultural area in West Africa, high temporal as well as spatial resolution is necessary to delineate the small-sized fields and to obtain data from periods where different LULC types are distinguishable. However, such consistent time series are currently not available for West Africa. Thus, a spatio-temporal data fusion framework was developed in this thesis for the generation of high spatial and temporal resolution time series. Data fusion algorithms such as the Enhanced Spatial and Temporal Adaptive Reflectance Fusion Model (ESTARFM) enjoyed increasing popularity during recent years but they have hardly been used for the application on larger scales. In order to make it applicable for this purpose and to increase the input data availability, especially in cloud-prone areas such as West Africa, the ESTARFM framework was developed in this thesis introducing several enhancements. An automatic filling of cloud gaps was included in the framework in order to use even partly cloud-covered Landsat images for the fusion without producing gaps on the output images. In addition, the ESTARFM algorithm was improved to automatically account for regional differences in the heterogeneity of the study region. Further improvements comprise the automation of the time series generation as well as the significant acceleration of the processing speed through parallelization. The performance of the developed ESTARFM framework was tested by fusing an 8-day NDVI time series from Landsat and MODIS data for a focus area of 98,000 km² in the border region between Burkina Faso and Ghana. The results of this test show the capability of the ESTARFM framework to accurately produce high temporal resolution time series while maintaining the spatial detail, even in such a heterogeneous and cloud-prone region. The successfully tested framework was subsequently applied to generate consistent time series as the basis for the mapping of agricultural area in Burkina Faso for the years 2001, 2007, and 2014. In a first step, high temporal (8-day) and high spatial (30 m) resolution NDVI time series for the entire country and the three years were derived with the ESTARFM framework. More than 500 Landsat scenes and 3000 MODIS scenes were automatically processed for this purpose. From the fused ESTARFM NDVI time series, phenological metrics were extracted and together with the single time steps of NDVI served as input for the delineation of rainfed agricultural areas, irrigated agricultural areas and plantations. The classification was conducted with the random forest algorithm at a 30 m spatial resolution for entire Burkina Faso and the three years 2001, 2007, and 2014. For the training and validation of the classifier, a randomly sampled reference dataset was generated from Google Earth images based on expert knowledge of the region. The overall classification accuracies of 92\% (2001), 91\% (2007), and 91\% (2014) indicate the well-functioning of the developed methodology. The resulting maps show an expansion of agricultural area of 91\% from about 61,000 km² in 2001 to 116,900 km² in 2014. While rainfed agricultural areas account for the major part of this increase, irrigated areas and plantations also spread considerably. Especially the expansion of irrigation systems and plantation area can be explained by the promotion through various national and international development projects. The increase of agricultural areas goes in line with the rapid population growth in most of Burkina Faso's provinces which still had available land resources for an expansion of agricultural area. An analysis of the development of agricultural areas in the vicinity of protected areas highlighted the increased human pressure on these reserves. The protection of the remnant habitats for flora and fauna while at the same time improving food security for a rapidly growing population, are the major challenges for the region in the future. The developed ESTARFM framework showed great potential beyond its utilization for the mapping of agricultural area. Other large-scale research that requires a sufficiently high temporal and spatial resolution such as the monitoring of land degradation or the investigation of land surface phenology could greatly benefit from the application of this framework.}, subject = {Fernerkundung}, language = {en} } @phdthesis{Auerhammer2018, author = {Auerhammer, Nina A.}, title = {Energy Transfer and Excitonic Interactions in Conjugated Chromophore Arrangements of Bodipys and Pyrenes and Squaraines}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-166721}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {In this work the energy transfer and excitonic coupling in different chromophore arrangements were investigated. A difference in the coupling strength was introduced by varring the connecting unit and the spacial orientation relative to each other. The synthesis of the 2,7-substituted pyrene compounds could be optimised and good yields of HAB 1 and HAB 2 and small amounts of HAB 2 could be achieved by cobalt-catalysed trimerisation or Diels Alder reaction in the end. Absorption and fluorescence spectra reveal strong intramolecular interactions between the pyrene molecules in the HAB 1. Excitation spectra recorded at the high and low energy fluorescence suggest the contribution of two components to the spectra. One being similar to the ground state aggregate and a second species similar to undisturbed pyrene. All these feature can be accounted to two different fluorescent states which are due to electronical decoupling in the excited state. Due to the strong intramolecular coupling already in the ground state of the molecule, no energy transfer could be studied, as the six pyrene units cannot be seen as separate spectroscopic entities between which energy could be transferred. In the second part of this thesis dye conjugates of different size and alignment were synthesised to study the interaction of the transition-dipole moments. Therefore a systematic investigation of Sonogashira conditions was performed in order to obtain good yields of the desired compounds and keep dehalogenation at a minimum level. Nevertheless only the symmetrical triads could be purified as the asymmeric triads and pentades proved to decompose during purification. The pyrene containing triads Py2B and Py2SQB show small interactions already in the ground state represented by red shifts of the spectra and a broadening of the bands. Nevertheless, these interactions are in the weak coupling regime and energy transfer between the constituents is possible. On the contrary in the TA spectra it is obvious that always the whole triad, at least to some extend is excited. To question if the excitation of the high energy state is deactivated by energy transfer or rather IC in a superchromophore could not be distinguished in the course of this work. At present additional time-dependent calculations of the dynamics are in progress to get a deeper understanding of the photophysical processes taking place in the triads. The dye conjugates B2SQB-3 and (SQB)2B-4 can be assigned to the strong interaction range and hence are describable by exciton theory. The transition-dipole moments proved to be more than additive and increase for both compounds from absorption to fluorescence. This can be explained by an enhancement of the coupling in the relaxed excited state compared to the absorption into the Franck-Condon state due to a more steep potential energy surface in the excited state and hence smaller fluctuations. In the last part of this thesis the influence of disrupting electronical communication by implementing a rigid non-conjugated bridge in a bichromophoric trans-squaraine system was tested. While the flexible linked squaraines show complex spectra due to different conformers the SQA2Anth compound is rigified and no rotation is possible. This change in flexibility is represented in the steady-state spectra where just one main absorption and fluorescence band is present due to a single allowed excitonic state. The system proves to own an excited state that is completely delocalised over the whole molecule.}, subject = {Chromophor}, language = {en} } @phdthesis{Martin2018, author = {Martin, Corinna}, title = {Oxidized phospholipids and their role in neuronal excitation of primary sensory neurons}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-160665}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Recently, our research group identified in a study novel proalgesic targets in acute and chronic inflammatory pain: oxidized phospholipids (OxPL). OxPL, endogenous chemical irritants, are generated in inflamed tissue and mediate their pain-inducing function by activating the transient receptor potential channels TRPA1 and TRPV1. Both channels are sensors for chemical stimuli on primary afferent nociceptors and are involved in nociception. Here, with the help of calcium imaging and whole cell patch clamp recording techniques, it was found that OxPL metabolites acutely activate TRPA1 and TRPV1 ion channels to excite DRG neurons. OxPL species act predominantly via TRPA1 ion channels and mediate long- lasting non-selective inward currents. Notably, one pure OxPL compound, PGPC, activated a TRPA1 mutant lacking the binding site for electrophilic agonists, suggesting that OxPL activate TRP ion channels by an indirect mechanical mechanism. Next, it was investigated how OxPL influence the excitability of primary sensory neurons. Acute stimulation and fast calcium imaging revealed that OxPL elicit repetitive, spike-like calcium transients in small- diameter DRG neurons, which were fully blocked by antagonists against TRPA1/V1 and N- type voltage-gated calcium channels. In search of a mechanism that drives repetitive spiking of DRG neurons, it was asked whether NaV1.9, a voltage-gated sodium channel involved in subthreshold excitability and nociception, is needed to trigger OxPL-induced calcium spikes and action potential firing. In electrophysiological recordings, both the combination of local application of OxPL and current injection were required to efficiently increase the action potential (AP) frequency of small-diameter sensory neurons. However, no difference was monitored in the resting membrane potential or OxPL-induced AP firing rate between wt and NaV1.9-deficient small diameter DRG neurons. To see whether NaV1.9 needs inflammatory conditions to be integrated in the OxPL-induced excitation cascade, sensory neurons were pretreated with a mixture of inflammatory mediators before OxPL application. Under inflammatory conditions both the AP and the calcium-spike frequency were drastically enhanced in response to an acute OxPL stimulus. Notably, this potentiation of OxPL stimuli was entirely lost in NaV1.9 deficient sensory neurons. Under inflammatory conditions, the resting membrane potential of NaV1.9-deficient neurons was more negative compared to wt neurons, suggesting that NaV1.9 shows resting activity only under inflammatory conditions. In conclusion, OxPL are endogenous irritants that induce excitability in small-diameter DRG neurons, a cellular model of nociceptors, via TRP activation. This effect is potentiated under inflammatory conditions. Under these conditions, NaV1.9 functions as essential mediator as it eases the initiation of excitability after OxPL stimulation. As mutants in the human NaV1.9 mediate an enhanced or painless perception, this study provides new insight into the mechanism on how NaV1.9 amplifies stimuli of endogenous irritants under inflammatory conditions.}, subject = {Entz{\"u}ndung}, language = {en} } @phdthesis{Hofmann2018, author = {Hofmann, Lukas}, title = {The α-galactosidase A deficient mouse as a model for Fabry disease and the effect of Gb3 depositions on peripheral nociceptive ion channel function}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-158513}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Fabry disease (FD) is an X-linked lysosomal storage disorder with intracellular accumulation of globotriaosylceramide (Gb3) due to α-galactosidase A deficiency. We studied α-galactosidase A knockout mice (GLA KO) as a model for sensory disturbance and pain in FD. Pain associated behavior of young (3 months) and old (≥18 months) GLA KO mice and wildtype (WT) littermates in an inflammatory and a neuropathic pain model was investigated. Furthermore, affective and cognitive behavior was assessed in the na{\"i}ve state and in an inflammatory pain model. Gene and protein expression of pain associated ion channels and Gb3 accumulation in dorsal root ganglion (DRG) neurons was determined. We also performed patch clamp analysis on cultivated DRG neurons and human embryonic kidney 293 (HEK) cells expressing voltage-gated-sodium channel 1.7 (Nav1.7) as an in vitro model of FD. Intracellular Gb3 deposits were modulated using shRNA silencing of α-galactosidase A. After intraplantar injection of complete Freund`s adjuvant (CFA) and chronic constriction injury (CCI) of the right sciatic nerve, old GLA KO mice did not develop heat and mechanical hypersensitivity in contrast to young GLA KO and old WT mice. Additionally, we found no relevant differences between genotypes and age-groups in affective and cognitive behavior in the na{\"i}ve state and after CFA injection. Gene and protein expression analysis provided no explanation for the observed sensory impairment. However, cultured DRG neurons of old GLA KO mice revealed a marked decrease of sodium and Ih-currents compared to young GLA KO and old WT mice. DRG neurons of old GLA KO mice displayed substantial intracellular accumulation of Gb3 compared to young GLA KO and old WT mice. Similar to cultured neurons, sodium currents were also decreased in HEK cells treated with shRNA and consecutively increased intracellular Gb3 deposits compared to the control condition, but could be rescued by treatment with agalsidase-alpha. Our study unveils that, similar to patients with FD, GLA KO mice display age-dependent sensory deficits. However, contrary to patients, GLA KO mice are also protected from hypersensitivity induced by inflammation and nerve lesion due to Gb3-dependent and reversible reduction of neuronal sodium- and Ih-currents. Our data provide evidence for direct Gb3-dependent ion channel impairment in sensory DRG neurons as a potential contributor to sensory dysfunction and pain in FD.}, subject = {Fabry-Krankheit}, language = {en} } @phdthesis{Huegel2018, author = {H{\"u}gel, Markus}, title = {The control of nanomorphology in star-shaped mesogens}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-165321}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Stilbene-based star-shaped mesogens have been synthesized with and without fullerene guests. Thermotropic properties and the mechanism of space-filling in the mesophases of these systems have been examined.}, subject = {Fl{\"u}ssigkristall}, language = {en} } @phdthesis{Heidenreich2018, author = {Heidenreich, Julius Frederik}, title = {Characterization of the widely used Rac1-inhibitors NSC23766 and EHT1864 in mouse platelets}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-165453}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Platelet activation and aggregation at sites of vascular injury is critical to prevent excessive blood loss, but may also lead to life-threatening ischemic diseases, such as myocardial infarction and stroke. Extracellular agonists induce platelet activation by stimulation of platelet membrane receptors. Signal transduction results in reorganization of the cytoskeleton, shape change, platelet adhesion and aggregation, cumulating in thrombus formation. Several Rho GTPases, including Rac1, Cdc42 and RhoA, are essential mediators of subsequent intracellular transduction of ITAM- and GPCR-signaling. Therefore, inhibition or knockout can result in severely defective platelet signaling. Mice with platelet specific Rac1-deficiency are protected from arterial thrombosis. This benefit highlights further investigation of Rac1-specific functions and its potential as a new pharmacological target for prevention of cardiovascular diseases. Two newly developed synthetic compounds, NSC23766 and EHT1864, were proposed to provide highly specific inhibition of Rac1 activity, but both drugs have never been tested in Rac1-deficient cell systems to rule out potential Rac1-independent effects. This study revealed significant off-target effects of NSC23766 and EHT1864 that occurred in a dose-dependent fashion in both wild-type and Rac1-deficient platelets. Both inhibitors individually affected resting platelets after treatment, either by altering membrane protein expression (NSC23766) or by a marked decrease of platelet viability (EHT1864). Platelet apoptosis could be confirmed by enhanced levels of phosphatidylserine exposure and decreased mitochondrial membrane potential. Phosphorylation studies of the major effector proteins of Rac1 revealed that NSC23766 and EHT1864 abolish PAK1/PAK2 activation independently of Rac1 in wild-type and knockout platelets, which may contribute to the observed off-target effects. Additionally, this study demonstrated the involvement of Rac1 in G protein-coupled receptor-mediated platelet activation and GPIb-induced signaling. Furthermore, the data revealed that Rac1 is dispensable in the process of integrin IIb 3-mediated clot retraction. This study unveiled that new pharmacological approaches in antithrombotic therapy with Rac1 as molecular target have to be designed carefully in order to obtain high specificity and minimize potential off-target effects.}, subject = {Thrombozyt}, language = {en} } @phdthesis{Steck2018, author = {Steck, Daniel}, title = {Lagrange Multiplier Methods for Constrained Optimization and Variational Problems in Banach Spaces}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-174444}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {This thesis is concerned with a class of general-purpose algorithms for constrained minimization problems, variational inequalities, and quasi-variational inequalities in Banach spaces. A substantial amount of background material from Banach space theory, convex analysis, variational analysis, and optimization theory is presented, including some results which are refinements of those existing in the literature. This basis is used to formulate an augmented Lagrangian algorithm with multiplier safeguarding for the solution of constrained optimization problems in Banach spaces. The method is analyzed in terms of local and global convergence, and many popular problem classes such as nonlinear programming, semidefinite programming, and function space optimization are shown to be included as special cases of the general setting. The algorithmic framework is then extended to variational and quasi-variational inequalities, which include, by extension, Nash and generalized Nash equilibrium problems. For these problem classes, the convergence is analyzed in detail. The thesis then presents a rich collection of application examples for all problem classes, including implementation details and numerical results.}, subject = {Optimierung}, language = {en} } @phdthesis{Godbole2018, author = {Godbole, Amod Anand}, title = {A new paradigm in GPCR signaling at the trans-Golgi network of thyroid cells}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-147159}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Whereas G-protein coupled receptors (GPCRs) have been long believed to signal through cyclic AMP exclusively at cell surface, our group has previously shown that GPCRs not only signal at the cell surface but can also continue doing so once internalized together with their ligands, leading to persistent cAMP production. This phenomenon, which we originally described for the thyroid stimulating hormone receptor (TSHR) in thyroid cells, has been observed also for other GPCRs. However, the intracellular compartment(s) responsible for such persistent signaling and its consequences on downstream effectors were insufficiently characterized. The aim of this study was to follow by live-cell imaging the trafficking of internalized TSHRs and other involved signaling proteins as well as to understand the consequences of signaling by internalized TSHRs on the downstream activation of protein kinase A (PKA). cAMP and PKA activity was measured in real-time in living thyroid cells using FRET-based sensors Epac1-camp and AKAR2 respectively. The results suggest that TSH co-internalizes with its receptor and that the internalized TSH/TSHR complexes traffic retrogradely to the trans-Golgi network (TGN). This study also provides evidence that these internalized TSH/TSHR complexes meet an intracellular pool of Gs proteins in sorting endosomes and in TGN and activate it there, as visualized in real-time using a conformational biosensor nanobody, Nb37. Acute Brefeldin A-induced Golgi collapse hinders the retrograde trafficking of TSH/TSHR complexes, leading to reduced cAMP production and PKA signaling. BFA pretreatment was also able to attenuate CREB phosphorylation suggesting that an intact Golgi/TGN organisation is essential for an efficient cAMP/PKA signaling by internalized TSH/TSHR complexes. Taken together this data provides evidence that internalized TSH/TSHR complexes meet and activate Gs proteins in sorting endosomes and at the TGN, leading to a local activation of PKA and consequently increased CREB activation. These findings suggest unexpected functions for receptor internalization, with major pathophysiological and pharmacological implications.}, subject = {G-Protein gekoppelte Rezeptoren}, language = {en} } @phdthesis{Bartossek2018, author = {Bartossek, Thomas}, title = {Structural and functional analysis of the trypanosomal variant surface glycoprotein using x-ray scattering techniques and fluorescence microscopy}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-144775}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Trypanosoma brucei is an obligate parasite and causative agent of severe diseases affecting humans and livestock. The protist lives extracellularly in the bloodstream of the mammalian host, where it is prone to attacks by the host immune system. As a sophisticated means of defence against the immune response, the parasite's surface is coated in a dense layer of the variant surface glycoprotein (VSG), that reduces identification of invariant epitopes on the cell surface by the immune system to levels that prevent host immunity. The VSG has to form a coat that is both dense and mobile, to shield invariant surface proteins from detection and to allow quick recycling of the protective coat during immune evasion. This coat effectively protects the parasite from the harsh environment that is the mammalian bloodstream and leads to a persistent parasitemia if the infection remains untreated. The available treatment against African Trypanosomiasis involves the use of drugs that are themselves severely toxic and that can lead to the death of the patient. Most of the drugs used as treatment were developed in the early-to-mid 20th century, and while developments continue, they still represent the best medical means to fight the parasite. The discovery of a fluorescent VSG gave rise to speculations about a potential interaction between the VSG coat and components of the surrounding medium, that could also lead to a new approach in the treatment of African Trypanosomiasis that involves the VSG coat. The initially observed fluorescence signal was specific for a combination of a VSG called VSG'Y' and the triphenylmethane (TPM) dye phenol red. Exchanging this TPM to a bromo-derivative led to the observation of another fluorescence effect termed trypanicidal effect which killed the parasite independent of the expressed VSG and suggests a structurally conserved feature between VSGs that could function as a specific drug target against T. b. brucei. The work of this thesis aims to identify the mechanisms that govern the unique VSG'Y' fluorescence and the trypanocidal effect. Fluorescence experiments and protein mutagenesis of VSG'Y' as well as crystallographic trials with a range of different VSGs were utilized in the endeavour to identify the binding mechanisms between TPM compounds and VSGs, to find potentially conserved structural features between VSGs and to identify the working mechanisms of VSG fluorescence and the trypanocidal effect. These trials have the potential to lead to the formulation of highly specific drugs that target the parasites VSG coat. During the crystallographic trials of this thesis, the complete structure of a VSG was solved experimentally for the first time. This complete structure is a key component in furthering the understanding of the mechanisms governing VSG coat formation. X-ray scattering techniques, involving x-ray crystallography and small angle x-ray scattering were applied to elucidate the first complete VSG structures, which reveal high flexibility of the protein and supplies insight into the importance of this flexibility in the formation of a densely packed but highly mobile surface coat.}, subject = {Trypanosoma brucei brucei}, language = {en} } @phdthesis{vanEeuwijk2018, author = {van Eeuwijk, Judith Martina Maria}, title = {Studies on thrombopoiesis and spleen tyrosine kinase-mediated signaling in platelets}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-142933}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {In mammals, anucleate blood platelets are constantly produced by their giant bone marrow (BM) progenitors, the megakaryocytes (MKs), which originate from hematopoietic stem cells. Megakaryopoiesis and thrombopoiesis have been studied intensively, but the exact mechanisms that control platelet generation from MKs remain poorly understood. Using multiphoton intravital microscopy (MP-IVM), thrombopoiesis and proplatelet formation were analyzed in the murine BM in real-time and in vivo, identifying an important role for several proteins, including Profilin1, TRPM7 and RhoA in thrombopoiesis. Currently, it is thought that blood cell precursors, such as MKs, migrate from the endosteal niche towards the vascular niche during maturation. In contrast to this paradigm, it was shown that MKs are homogeneously distributed within the dense BM blood vessel network, leaving no space for vessel-distant niches. By combining results from in vivo MP-IVM, in situ light-sheet fluorescence microscopy (LSFM) of the intact BM as well as computational simulations, surprisingly slow MK migration, limited intervascular space and a vessel-biased MK pool were revealed, contradicting the current concept of directed MK migration during thrombopoiesis. Platelets play an essential role in hemostasis and thrombosis, but also in the pathogenesis of ischemic stroke. Ischemic stroke, which is mainly caused by thromboembolic occlusion of brain arteries, is among the leading causes of death and disability worldwide with limited treatment options. The platelet collagen receptor glycoprotein (GP) VI is a key player in arterial thrombosis and a critical determinant of stroke outcome, making its signaling pathway an attractive target for pharmacological intervention. The spleen tyrosine kinase (Syk) is an essential signaling mediator downstream of GPVI, but also of other platelet and immune cell receptors. In this thesis, it was demonstrated that mice lacking Syk specifically in platelets are protected from arterial thrombus formation and ischemic stroke, but display unaltered hemostasis. Furthermore, it was shown that mice treated with the novel, selective and orally bioavailable Syk inhibitor BI1002494 were protected in a model of arterial thrombosis and had smaller infarct sizes and a significantly better neurological outcome 24 h after transient middle cerebral artery occlusion (tMCAO), also when BI1002494 was administered therapeutically, i.e. after ischemia. These results provide direct evidence that pharmacological Syk inhibition might become a safe therapeutic strategy. The T cell receptor  chain-associated protein kinase of 70 kDA (Zap-70) is also a spleen tyrosine kinase family member, but has a lower intrinsic activity compared to Syk and is expressed in T cells and natural killer (NK) cells, but not in platelets. Unexpectedly, arterial thrombus formation in vivo can occur independently of Syk kinase function as revealed by studies in Sykki mice, which express Zap-70 under the control of intrinsic Syk promoter elements.}, subject = {Thrombose}, language = {en} } @phdthesis{Das2018, author = {Das, Sudip}, title = {Genome-wide identification of virulence-associated genes in Staphylococcus aureus using Transposon insertion-site deep sequencing}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-143362}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Staphylococcus aureus asymptomatically colonises one third of the healthy human population, finding its niche in the nose and on skin. Apart from being a commensal, it is also an important opportunistic human pathogen capable of destructing tissue, invading host cells and killing them from within. This eventually contributes to severe hospital- and community-acquired infections. Methicillin-resistant Staphylococcus aureus (MRSA), resistant to commonly used antibiotics are protected when residing within the host cell. This doctoral thesis is focused on the investigation of staphylococcal factors governing intracellular virulence and subsequent host cell death. To initiate an unbiased approach to conduct this study, complex S. aureus mutant pools were generated using transposon insertional mutagenesis. Genome-wide infection screens were performed using these S. aureus transposon mutant pools in vitro and in vivo, followed by analysis using Transposon insertion site deep sequencing (Tn-seq) technology. Amongst several other factors, this study identified a novel regulatory system in S. aureus that controls pathogen-induced host cytotoxicity and intra-host survival. The primary components of this system are an AraC-family transcription regulator called Repressor of surface proteins (Rsp) and a virulence associated non-coding RNA, SSR42. Mutants within rsp exhibit enhanced intra-host survival in human epithelial cells and delayed host cytotoxicity. Global gene-expression profiling by RNA-seq demonstrated that Rsp controls the expression of SSR42, several cytotoxins and other bacterial factors directed against the host immune system. Rsp enhances S. aureus toxin response when triggered by hydrogen peroxide, an antimicrobial substance employed by neutrophils to destroy pathogens. Absence of rsp reduces S. aureus-induced neutrophil damage and early lethality during mouse pneumonia, but still permits blood stream infection. Intriguingly, S. aureus lacking rsp exhibited enhanced survival in human macrophages, which hints towards a Trojan horse-like phenomenon and could facilitate dissemination within the host. Hence, Rsp emerged as a global regulator of bacterial virulence, which has an impact on disease progression with prolonged intra-cellular survival, delayed-lethality but allows disseminated manifestation of disease. Moreover, this study exemplifies the use of genome-wide approaches as useful resources for identifying bacterial factors and deduction of its pathogenesis.}, subject = {Staphylococcus aureus}, language = {en} } @phdthesis{Schartner2018, author = {Schartner, Christoph}, title = {The regulation of corticotropin releasing hormone receptor 1 gene expression and its role in panic disorder}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-150586}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Panic Disorder (PD) is characterized by unexpected, recurrent panic attacks, which are not restricted to certain situations, medication or stimuli. Like other anxiety disorders, PD is a multifactorial disorder and develops through the interaction of genetic and environmental risk factors. Despite an estimated heritability of up to 48\%, no distinct genetic mechanism could be revealed yet. A dysregulation of the stress response has been shown in patients with PD and several studies could find an association of components of the corticotropin-releasing factor (CRF) system with PD. The corticotropin releasing hormone receptor 1 (CRHR1) is the main receptor of CRF in the brain and thus a crucial regulator of cerebral CRF signaling. Recent genetic studies found an association of certain CRHR1 single nucleotide polymorphisms (SNPs) with PD and other anxiety disorders. Among the associated CRHR1 SNPs, rs17689918 showed further evidence in a multilevel study regulating CRHR1 gene expression in panic-relevant brain regions and affecting brain activation in fMRI experiments, as well as flight behavior in a behavioral avoidance task (Weber et al, 2015). Here, we aimed to investigate the underlying neurogenetic and neurobiological mechanisms, by which the rs17689918 risk allele affects CRHR1 gene expression and receptor function, and its putative function in the pathophysiology of PD. Due to its intronic position and the predicted change of splicing regulatory elements by the risk allele of rs17689918, the expression of alternative spliced CRHR1 isoforms was investigated using quantitative real-time PCR (qPCR) in a human post-mortem brain tissue sample. Of eight known CRHR1 isoforms, expression of three CRHR1 isoforms and the CRHR1-IT1-CRHR1 readthrough transcript variant 5 - all expressing the seven transmembrane domains needed for functional receptors - was analyzed. Subsequently, electrophysiological assays were developed to measure the receptor activity of differentially expressed CRHR1 isoforms via co-expressed Kir2.3 potassium channels in vitro. In a second approach, possible epigenetic regulation of CRHR1 expression by rs17689918 was investigated by analyses of DNA methylation patterns of a CpG Island within the CRHR1 promoter region, firstly in a case-control sample for PD and secondly in a healthy control sample, separated in high and low anxious individuals. To investigate a possible gene × epigene × environment interaction, the impact of early life stress by means of childhood trauma was evaluated via the childhood trauma questionnaire (CTQ). Finally, consequences of differential DNA methylation of the CRHR1 promoter region on gene expression were investigated by luciferase-based reporter gene assays in vitro. The expression of CRHR1β was significantly decreased in amygdalae and midbrains of risk allele carriers. The expression of CRHR1-IT1-CRHR1 readthrough transcript variant 5 was significantly increased in forebrains and midbrains of risk allele carriers. All other analyzed isoforms showed no differences in expression between non-risk and risk allele carriers of rs17689918. The electrophysiological recordings of membrane potential showed an activation of Kir2.3 channels by CRHR1β in contrast to an inconsistent mix of activation and inhibition of Kir2.3 by the main isoform CRHR1α. DNA methylation of the CRHR1 promoter region was significantly reduced in panic disorder patients, as well as in high anxious individuals of an independent healthy control sample, but no direct relation to the rs17689918 risk allele could be discerned. However, the combination of carrying the risk allele, low DNA methylation and high CTQ scores lead to increased sum scores in the Beck Anxiety Inventory (BAI) in healthy individuals. Functional analyses revealed an activation of gene expression by decreased DNA methylation of the promoter region in vitro. Our results revealed that rs17689918 regulates CRHR1 function by increasing the expression of alternative transcript variants with altered function. Our analyses of DNA methylation revealed decreased methylation as a new risk factor for panic disorder and high anxious behavior, which in combination with other risk factors like childhood trauma and the rs17689918 risk allele might further increase cognitive and somatic anxiety symptoms. This supports the role of CRHR1 as a plasticity gene of anxiety behavior, i.e. a gene that is highly regulated by epigenetic or post-transcriptional mechanisms in response to environmental stressors. By its role in CRF signaling, the dysregulation of CRHR1 might extensively affect the stress response and contribute to the pathophysiology of stress-related disorders like PD. The understanding of the underlying mechanisms, especially the genetic and epigenetic regulation, would however enhance CRHR1 as a target of improved future therapeutics for PD and other anxiety disorders.}, subject = {Corticoliberin}, language = {en} } @phdthesis{Eck2018, author = {Eck, Martin}, title = {Iron- and Copper-catalyzed Borylation of Alkyl and Aryl Halides and B-B Bond Activation and NHC Ring-expansion Reactions of the Diboron(4) Compound Bis(ethylene glycolato)diboron (B\(_2\)eg\(_2\))}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-149791}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {The purpose of the present work was, in the first part, to investigate the potential of iron-based metal complexes in catalytic borylation reactions with alkyl halides as substrates and B2pin2 as the borylation reagent. Moreover, extended studies of the recently reported, copper mediated borylation reactions of aryl halides were performed, including the screening of substrates and alkoxy bases as well as ligand-screening. Investigations were undertaken on the role of Cu-nanoparticles, which might be involved in this catalytic reaction. Furthermore, Cu-phosphine complexes were synthesized as precursors, but attempts to isolate Cu-boryl species which are intermediates in the proposed catalytic cycle were unsuccessful, although 11B NMR evidence for a Cu-boryl complex was obtained. In the second part of this work, the alternative, Lewis-acidic diboron(4) compound bis(ethylene glycolato)diboron (B2eg2) was synthesized to compare its reactivity with the reactivity of other diboron(4) compounds (e.g. B2neop2, B2cat2, B2pin2 and B2(NMe2)4). Therefore, reactions of B2eg2 with different Lewis-bases, such as NHCs and phosphines, were performed to investigate the possible formation of sp2-sp3 or sp3-sp3 adducts and ring-expansion reactions (RERs). The aim was to obtain a better general insight into the reactivity of diboron(4) compounds with Lewis-bases because they are both used as reactants in transition metal-catalyzed and metal-free borylation reactions. Understanding the B-B bond activation process promoted by Lewis-bases provides a new perspective on the reaction pathways available for various borylation reactions.}, language = {en} } @phdthesis{Kalleda2018, author = {Kalleda, Nataraja Swamy}, title = {Spatiotemporal analysis of immune cell recruitment and Neutrophil defence functions in \(Aspergillus\) \(fumigatus\) lung infections}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-150931}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Humans are continuously exposed to airborne spores of the saprophytic fungus Aspergillus fumigatus. In healthy individuals, local pulmonary host defence mechanisms can efficiently eliminate the fungus without any overt symptoms. In contrast, A. fumigatus causes devastating infections in immunocompromised patients. However, local host immune responses against A. fumigatus lung infections in immunocompromised conditions have remained largely elusive. Given the dynamic changes in immune cell subsets within tissues upon immunosuppressive therapy, we dissected the spatiotemporal pulmonary immune response after A. fumigatus infection to reveal basic immunological events that fail to effectively control the invasive fungal disease. In different immunocompromised murine models, myeloid but not lymphoid cells were strongly recruited upon infection. Notably, neutrophils and macrophages were recruited to infected lungs in different immunosuppressed regimens. Other myeloid cells, particularly dendritic cells and monocytes were only recruited in the corticosteroid model after infection. Lymphoid cells, particularly CD4+ or CD8+ T-cells and NK cells were highly reduced upon immunosuppression and were not recruited after A. fumigatus infection. Importantly, adoptive CD11b+ myeloid cell transfer rescued immunosuppressed mice from lethal A. fumigatus infection. These findings illustrate that CD11b+ myeloid cells are critical for anti-A. fumigatus defence under immunocompromised conditions. Despite improved antifungal agents, invasive A. fumigatus lung infections cause a high rate morbidity and mortality in neutropenic patients. Granulocyte transfusions have been tested as an alternative therapy for the management of high-risk neutropenic patients with invasive A. fumigatus infections. To increase the granulocyte yield for transfusion, donors are treated with corticosteroids. Yet, the efficacy of granulocyte transfusion and the functional defence mechanisms of granulocytes collected from corticosteroid treated donors remain largely elusive. We aimed to assess the efficacy of granulocyte transfusion and functional defence mechanisms of corticosteroid treated granulocytes using mouse models. In this thesis, we show that transfusion of granulocytes from corticosteroid treated mice did not protect cyclophosphamide immunosuppressed mice against lethal A. fumigatus infection in contrast to granulocytes from untreated mice. Upon infection, increased levels of inflammatory cytokines helped to recruit granulocytes to the lungs without any recruitment defects in corticosteroid treated and infected mice or in cyclophosphamide immunosuppressed and infected mice that have received the granulocytes from corticosteroid treated mice. However, corticosteroid treated human or mouse neutrophils failed to form neutrophil extracellular traps (NETs) in in vitro and in vivo conditions. Further, corticosteroid treated granulocytes exhibited impaired ROS production against A. fumigatus. Notably, corticosteroids impaired the β-glucan receptor Dectin-1 (CLEC7A) on mouse and human granulocytes to efficiently recognize and phagocytize A. fumigatus, which markedly impaired fungal killing. We conclude that corticosteroid treatment of granulocyte donors for increasing neutrophil yields or patients with ongoing corticosteroid treatment could result in deleterious effects on granulocyte antifungal functions, thereby limiting the benefit of granulocyte transfusion therapies against invasive fungal infections.}, subject = {Aspergillus fumigatus}, language = {en} } @phdthesis{Lichtenstein2018, author = {Lichtenstein, Leonie}, title = {Color vision and retinal development of the compound eye in bees}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-150997}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {The superfamiliy of bees, Apiformes, comprises more than 20,000 species. Within the group, the eusocial species like honeybees and bumblebees are receiving increased attention due to their outstanding importance for pollination of many crop and wild plants, their exceptional eusocial lifestyle and complex behavioral repertoire, which makes them an interesting invertebrate model to study mechanisms of sensory perception, learning and memory. In bees and most animals, vision is one of the major senses since almost every living organism and many biological processes depend on light energy. Bees show various forms of vision, e.g. color vision, achromatic vision or polarized vision in order to orientate in space, recognize mating partners, detect suitable nest sites and search for rewarding food sources. To catch photons and convert light energy into electric signals, bees possess compound eyes which consists of thousands of single ommatidia comprising a fixed number of photoreceptors; they are characterized by a specific opsin protein with distinct spectral sensitivity. Different visual demands, e.g. the detection of a single virgin queen by a drone, or the identification and discrimination of flowers during foraging bouts by workers, gave rise to the exceptional sex-specific morphology and physiology of male and female compound eyes in honeybees. Since Karl von Frisch first demonstrated color vision in honeybees more than 100 years ago, much effort has been devoted to gain insight into the molecular, morphological and physiological characteristics of (sex-specific) bee compound eyes and the corresponding photoreceptors. However, to date, almost nothing is known about the underlying mechanisms during pupal development which pattern the retina and give rise to the distinct photoreceptor distribution. Hence, in Chapter 2 and 3 I aimed to better understand the retinal development and photoreceptor determination in the honeybee eye. In a first step, the intrinsic temporal expression pattern of opsins within the retina was evaluated by quantifying opsin mRNA expression levels during the pupal phase of honeybee workers and drones. First results revealed that honeybee workers and drones express three different opsin genes, UVop, BLop and Lop1 during pupal development which give rise to an ultraviolet, blue, and green-light sensitive photoreceptor. Moreover, opsin expression patterns differed between both sexes and the onset of a particular opsin occurred at different time points during retinal development. Immunostainings of the developing honeybee retina in Chapter 2 showed that at the beginning of pupation the retina consist only of a thin hypodermis. However, at this stage all retinal structures are already present. From about mid of pupation, opsin expression levels increase and goes hand in hand with the differentiation of the rhabdoms, suggesting a two-step process in photoreceptor development and differentiation in the honeybee compound eye. In a first step the photoreceptor cells meet its fate during late pupation; in a second step, the quantity of opsin expression in each photoreceptor strongly increase up to the 25-fold shortly after eclosion. To date, the underlying mechanisms leading to different photoreceptor types have been intensively studied in the fruit fly, Drosophila melanogaster, and to some extend in butterflies. Interestingly, the molecular mechanisms seemed to be conserved within insects and e.g. the two transcription factors, spalt and spineless, which have been shown to be essential for photoreceptor determination in flies and butterflies, have been also identified in the honeybee. In chapter 3, I investigated the expression patterns of both transcription factors during pupal development of honeybee workers and showed that spalt is mainly expressed during the first few pupal stages which might correlate with the onset of BLop expression. Further, spineless showed a prominent peak at mid of pupation which might initiates the expression of Lop1. However, whether spalt and spineless are also essential for photoreceptor determination in the honeybee has still to be investigated, e.g. by a knockdown/out of the respective transcription factor during retinal development which leads to a spectral phenotype, e.g. a dichromatic eye. Such spectral phenotypes can then be tested in behavioral experiments in order to test the function of specific photoreceptors for color perception and the entrainment of the circadian clock. In order to evaluate the color discrimination capabilities of bees and the quality of color perception, a reliable behavioral experiment under controlled conditions is a prerequisite. Hence, in chapter 4, I aimed to establish the visual PER paradigm as a suitable method for behaviorally testing color vision in bees. Since PER color vision has considered to be difficult in bees and was not successful in Western honeybees without ablating the bee's antennae or presenting color stimuli in combination with other cues for several decades, the experimental setup was first established in bumblebees which have been shown to be robust and reliable, e.g. during electrophysiological recordings. Workers and drones of the bufftailed bumblebee, Bombus terrestris were able to associate different monochromatic light stimuli with a sugar reward and succeeded in discriminating a rewarded color stimulus from an unrewarded color stimulus. They were also able to retrieve the learned stimulus after two hours, and workers successfully transferred the learned information to a new behavioral context. In the next step, the experimental setup was adapted to honeybees. In chapter 5, I tested the setup in two medium-sized honeybees, the Eastern honeybee, Apis cerana and the Western honeybee, Apis mellifera. Both honeybee species were able to associate and discriminate between two monochromatic light stimuli, blue and green light, with peak sensitivities of 435 nm and 528 nm. Eastern and Western honeybees also successfully retrieve the learned stimulus after two hours, similar to the bumblebees. Visual conditioning setups and training protocols in my study significantly differed from previous studies using PER conditioning. A crucial feature found to be important for a successful visual PER conditioning is the duration of the conditioned stimulus presentation. In chapter 6, I systematically tested different length of stimuli presentations, since visual PER conditioning in earlier studies tended to be only successful when the conditioned stimulus is presented for more than 10 seconds. In this thesis, intact honeybee workers could successfully discriminate two monochromatic lights when the stimulus was presented 10 s before reward was offered, but failed, when the duration of stimulus presentation was shorter than 4 s. In order to allow a more comparable conditioning, I developed a new setup which includes a shutter, driven by a PC based software program. The revised setup allows a more precise and automatized visual PER conditioning, facilitating performance levels comparable to olfactory conditioning and providing now an excellent method to evaluate visual perception and cognition of bees under constant and controlled conditions in future studies.}, subject = {Biene}, language = {en} } @phdthesis{GarciaBetancur2018, author = {Garcia Betancur, Juan Carlos}, title = {Divergence of cell-fates in multicellular aggregates of \(Staphylococcus\) \(aureus\) defines acute and chronic infection cell types}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-148059}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Staphylococcus aureus is a versatile human pathogen that normally develops acute or chronic infections. The broad range of diseases caused by this bacterium facilitates the escape from the host's immune response as well as from target-specific antimicrobial therapies. Nevertheless, the underlying cellular and molecular mechanisms that enable S. aureus to cause these disparate types of infections are largely unknown. In this work, we depicted a novel genetic program involved in the development of cell-fate decision, which promotes the differentiation of the staphylococcal cells into two genetically identical but differently heritable cell lines capable of defining the course of an infection, by simultaneously progressing to (i) a biofilm-associated chronic infection or (ii) a disperse acute bacteremia. Here, S. aureus growing in architecturally complex multicellular communities harbored different cell types that followed an exclusive developmental plan, resulting in a clonal heterogeneous population. We found that these cell types are physiologically specialized and that, this specialization impacts the collective behavior within the multicellular aggregates. Whereas one cell line that we named BRcells, promotes biofilm formation that engenders chronic infections, the second cell line, which we termed DRcells is planktonic and synthetizes virulence factors, such as toxins that can drive acute bacteremia. We identified that the positive feedback loop present in Agr quorum sensing system of S. aureus acts a bimodal switch able to antagonistically control the divergence of these two physiologically distinct, heritable cell lines. Also, we found that this bimodal switch was triggered in response to environmental signals particularly extracellular Mg2+, affecting the size of the subpopulations in specific colonization environments. Specifically, Mg2+-enriched environments enhanced the binding of this cation to the staphylococcal teichoic acids, increasing the rigidity of the cell wall and triggering a genetic program involving the alternative sigma factor σB that downregulated the Agr bimodal switch, favoring the enrichment of the BRcells type. Therefore, colonization environments with different Mg2+ content favored different outcomes in the bimodal system, defining distinct ratio in the BRcells/DRcells subpopulations and the S. aureus outcome in our in vitro model of development of multicellular aggregates and, the infection outcome in an in vivo mice infection model. In this prime human pathogen cell-fate decision-making generates a conserved pattern of heritable, physiological heterogeneity that actively contributes to determine the course of an infection through the emergence and spatio-temporal dynamics of distinct and specialized cell types. In conclusion, this work demonstrates that cell differentiation in pathogenic bacteria is a fundamental phenomenon and its understanding, is central to understand nosocomial infections and to designing new anti-infective strategies}, subject = {Staphylococcus aureus}, language = {en} } @phdthesis{Joschinski2018, author = {Joschinski, Jens}, title = {Is the phenology of pea aphids (\(Acyrthosiphon\) \(pisum\)) constrained by diurnal rhythms?}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-148099}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {The rotation of the earth leads to a cyclic change of night and day. Numerous strategies evolved to cope with diurnal change, as it is generally advantageous to be synchronous to the cyclic change in abiotic conditions. Diurnal rhythms are regulated by the circadian clock, a molecular feedback loop of RNA and protein levels with a period of circa 24 hours. Despite its importance for individuals as well as for species interactions, our knowledge of circadian clocks is mostly confined to few model organisms. While the structuring of activity is generally adaptive, a rigid temporal organization also has its drawbacks. For example, the specialization to a diurnal pattern limits the breadth of the temporal niche. Organisms that are adapted to a diurnal life style are often poor predators or foragers during night time, constraining the time budget to only diurnal parts of the day/night cycle. Climate change causes shifts in phenology (seasonal timing) and northward range expansions, and changes in season or in latitude are associated with novel day length - temperature correlations. Thus, seasonal organisms will have some life history stages exposed to novel day lengths, and I hypothesized that the diurnal niche determines whether the day length changes are beneficial or harmful for the organism. I thus studied the effects of day length on life-history traits in a multi-trophic system consisting of the pea aphid Acyrthosiphon pisum and predatory larvae of Chrysoperla carnea (common green lacewing) and Episyrphus balteatus (marmalade hoverfly). In order to identify the mechanisms for phenological constraints I then focused on diurnal rhythms and the circadian clock of the pea aphid. Aphids reacted to shorter days with a reduced fecundity and shorter reproductive period. Short days did however not impact population growth, because the fitness constraints only became apparent late in the individual's life. In contrast, E. balteatus grew 13\% faster in the shorter day treatment and preyed on significantly more aphids, whereas C. carnea grew 13\% faster under longer days and the elevation of predation rates was marginally significant. These results show that day length affects vital life-history traits, but that the direction and effect size depends on species. I hypothesized that the constraints or fitness benefits are caused by a constricted or expanded time budget, and hence depend on the temporal niche. E. balteatus is indeed night-active and C. carnea appears to be crepuscular, but very little data exists for A. pisum. Hence, I reared the pea aphid on an artificial diet and recorded survival, moulting and honeydew excretion. The activity patterns were clearly rhythmic and molting and honeydew excretion were elevated during day-time. Thus, the diurnal niche could explain the observed, but weak, day length constraints of aphids. The diurnal niche of some organisms is remarkably flexible, and a flexible diurnal niche may explain why the day length constrains were relatively low in A. pisum. I thus studied its circadian clock, the mechanism that regulates diurnal rhythms. First, I improved an artificial diet for A. pisum, and added the food colorant Brilliant Blue FCF. This food colorant stained gut and honeydew in low concentration without causing mortalities, and thus made honeydew excretion visible under dim red light. I then used the blue diet to raise individual aphids in 16:08 LD and constant darkness (DD), and recorded honeydew excretion and molting under red light every three hours. In addition, we used a novel monitoring setup to track locomotor activity continuously in LD and DD. Both the locomotor rhythm and honeydew excretion of A. pisum appeared to be bimodal, peaking in early morning and in the afternoon in LD. Both metabolic and locomotor rhythm persisted also for some time under constant darkness, indicating that the rhythms are driven by a functional circadian clock. However, the metabolic rhythm damped within three to four days, whereas locomotor rhythmicity persisted with a complex distribution of several free-running periods. These results fit to a damped circadian clock that is driven by multiple oscillator populations, a model that has been proposed to link circadian clocks and photoperiodism, but never empirically tested. Overall, my studies integrate constraints in phenological adaptation with a mechanistic explanation. I showed that a shorter day length can constrain some species of a trophic network while being beneficial for others, and linked the differences to the diurnal niche of the species. I further demonstrated that a flexible circadian clock may alleviate the constraints, potentially by increasing the plasticity of the diurnal niche.}, subject = {Tagesrhythmus}, language = {en} } @phdthesis{Guenther2018, author = {G{\"u}nther, Katharina}, title = {Generation of early human neuroepithelial progenitors from primary cells for biomedical applications}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-150348}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Patient-specific induced pluripotent stem cells (iPSCs) emerged as a promising cell source for disease modeling and drug screening as well as a virtually unlimited source for restorative therapy. The thesis deals with three major topics to help realizing biomedical applications with neural stem cells. To enable the generation of transgene-free iPSCs, alternatives to retroviral reprogramming were developed. Hence, the adaptation and evaluation of reprogramming using excisable lentiviral constructs, Sendai virus (SeV) and synthetic mRNA-based methods was assessed in the first part of this thesis. hiPSCs exhibit the pluripotency markers OCT4, SSEA-4, TRA1-60 which were confirmed by immunofluorescence and flow cytometry. Besides, the potential to differentiate in cell types of all three germ layers was detected, confirming pluripotent identity of proliferating colonies resulting from various reprogramming strategies. However, major differences such as high efficiency with SeV in contrast to a relatively low efficiency with mRNA in regard to passage number and the phenotype of starting fibroblasts were observed. Furthermore, a prolonged clone- and passage-dependent residual presence of viral RNA genes was identified in SeV-iPSCs for up to 23 passages using RT-PCR underlining the importance of careful monitoring of clone selection. In contrast, viral-free reprogramming by synthetic mRNA represents a fully non-integrative approach but requires further refinement to be efficiently applicable to all fibroblasts. The second part of this thesis deals with the establishment of a rapid monolayer approach to differentiate neural progenitor cells from iPSCs. To achieve this, a two-step protocol was developed allowing first the formation of a stable, primitive NPC line within 7 days which was expanded for 2-3 passages. In a second step, a subsequent adaptation to conditions yielding neural rosette-like NPCs followed. Both neural lines were demonstrated to be expandable, cryopreservable and negative for the pluripotency marker OCT4. Furthermore, a neural precursor identity including SOX1, SOX2, PAX6, Nestin was confirmed by immunofluorescence and quantitative RT-PCR. Moreover, the differentiation resulted in TUJ1-positive neurons and GFAP-positive astrocytes. Nonetheless, the outcome of glial differentiation from primitive NSCs remained low, whereas FGF/EGF-NPCs were efficiently differentiated into GFAP-positive astrocytes which were implicated in a cellular model of the blood brain barrier. The third and major objective of this study was to generate human early neural progenitor cells from fetal brain tissue with a wide neural differentiation capacity. Therefore, a defined medium composition including small molecules and growth factors capable of modulation of crucial signaling pathways orchestrating early human development such as SHH and FGF was assessed. Indeed, specific culture conditions containing TGFβ inhibitor SB431542, SHH agonist Purmorphamine, GSK3β inhibitor CHIR99021 and basic FGF, but no EGF enabled robust formation of early neuroepithelial progenitor (eNEP) colonies displaying a homogeneous morphology and a high proliferation rate. Moreover, primary eNEPs exhibit a relatively high clonogenicity of more than 23 \% and can be monoclonally expanded for more than 45 passages carrying a normal karyotype. Characterization by immunofluorescence, flow cytometry and quantitative RT-PCR revealed a distinct NPC profile including SOX1, PAX6, Nestin and SOX2 and Prominin. Furthermore, primary eNEPs show NOTCH and HES5 activation in combination with non-polarized morphology, indicative of an early neuroepithelial identity. Microarray analysis unraveled SOX11, BRN2 and other HES-genes as characteristic upregulated genes. Interestingly, eNEPs were detected to display ventral midbrain/hindbrain regional identity. The validation of yielded cell types upon differentiation indicates a strong neurogenic potential with more than 90 \% of TUJ1-positive neurons. Moreover, astrocytes marked by GFAP and putative myelin structures indicating oligodendrocytes were identified. Electrophysiological recordings revealed functionally active neurons and immunofluorescence indicate GABAergic, glutamatergic, dopaminergic and serotonergic subtypes. Additionally, putative physiological synapse formation was observed by the presence of Synapsin and PSD-95 as well as by ultrastructural examination. Notably, rare neurons stained positive for the peripheral neuronal marker Peripherin suggesting the potential of eNEPS to give rise to cells of neural tube and neural crest origin. By the application of specific differentiation protocols an increase of TH-positive neurons or neural crest-derivatives such as putative A- and C-sensory neurons and mesenchymal cells was identified. Taken together, primary eNEPs might help to elucidate mechanisms of early human neurodevelopment and will serve as a novel source for cell replacement and further biomedical applications.}, subject = {progenitors}, language = {en} } @phdthesis{Coban2018, author = {Coban, Mustafa}, title = {Contributions to the Empirics of Immigration, Redistribution and Social Mobility}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-148934}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {In recent decades the international migration has increased worldwide. The influx of people from different cultures and ethnic groups poses new challenges to the labor market and the welfare state of the host countries and causes changes in the social fabric. In general, immigration benefits the economy of the host country. However, these gains from immigration are unevenly distributed among the native population. Natives who are in direct competition with the new workers expect wage losses and a higher probability of getting unemployed, whereas remaining natives foresee either no feedback effects or even wage gains. On the other hand, the tax and transfer system benefits disproportionally from an influx of highly skilled immigrants. Examinations of 20 European countries in 2010 show that a higher proportion of low-skilled immigrants in the immediate neighborhood of the natives increases the difference in the demand for redistribution between high-skilled and low-skilled natives. Thus, high-skilled natives are more opposed to an expansion of the governmental redistribution. On the one hand, a higher proportion of low-skilled immigrants generates a higher fiscal burden on the welfare state. On the other hand, high-skilled natives' wages increase due to an influx of low-skilled immigrants, since relative supply of high-skilled labor increases. In addition to the economic impact of immigration, the inflow of new citizens is accompanied by natives' fear of changes in the social environment as well as in symbolic values, such as cultural identity or natives' set of values. The latter might generate negative attitudes towards immigrants and increase the demand for a more restrictive immigration policy. On the other hand, more interethnic contact due to a higher ethnic diversity could reduce natives' information gaps, prejudices and stereotypes. This, in turn, could enhance more tolerance and solidarity towards immigrants among natives. Examinations of 18 European countries in 2014 show that more interethnic contact during everyday life reduces both the natives' social distance from immigrants and their fear of social upheaval by the presence of immigrants. However, natives' social distance from immigrants has no effect on their preference for redistribution, but their perceived threat to the national culture and social life by the presence of immigrants has a significantly negative impact on their demand for redistribution. Thus, natives' concern about the preservation of symbolic norms and values affects the solidarity channel of their redistribution preference. An individual's upward mobility over time or in relation to his or her parents determines his or her attitude towards the welfare state as well as the transfer of his or her opinions to his or her own children. With regard to intergenerational income mobility, Germany shows a value in the international midfield; higher than the United States (lower mobility) and lower than the Scandinavian countries (higher mobility). For example, if a father's lifetime income increases by 10 percent, his son's lifetime income increases by 4.9 percent in the United States and by 3.1 percent in Germany. Additionally, in Germany, fathers' lifetime income tends to show a higher impact on their sons' income if their incomes are higher. In the United States, fathers' lifetime incomes have a stronger influence on their sons' income at the lower and the upper end of the income distribution compared to the middle. Taking a closer look at the intragenerational wage mobility and wage inequality in Germany, the development at the current edge is rather sobering. Since 2000 there is a steady decline in wage mobility. Furthermore, wage mobility in the services sector has been significantly lower than in the manufacturing sector since the beginning of the 2000s. This result is mainly driven by the decrease of wage mobility in the health care and social services sector. Moreover, a worker's unemployment spells and occupation have become more important in the meantime. Since 2006 the increase in the German wage inequality has markedly slowed down and wage growth between 2006 and 2013 has been even polarized, i.e. wages at the lower and at the upper end of the wage distribution have increased more than wages in the middle. However, this development can be partly attributed to the computerization and automation of the production processes. Although, there was substitution of manual routine tasks between 2001 and 2013, cognitive routine tasks are still more pronounced in the middle and at the upper end of the wage distribution. Furthermore, the latter experienced an increase in wage mobility since 2000. On the other hand, manual non-routine tasks are localized disproportionally in the middle and at the lower end of the wage distribution. Thus, the wage gains of these occupations at the lower end were compensated for by the wage losses in the middle.}, subject = {Einwanderung}, language = {en} } @phdthesis{Mildner2018, author = {Mildner, Stephanie}, title = {Temporal organization in \(Camponotus\) \(ants\): endogenous clocks and zeitgebers responsible for synchronization of task-related circadian rhythms in foragers and nurses}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-149382}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {The rotation of the earth around its axis causes recurring and predictable changes in the environment. To anticipate those changes and adapt their physiology and behavior accordingly, most organisms possess an endogenous clock. The presence of such a clock has been demonstrated for several ant species including Camponotus ants, but its involvement in the scheduling of daily activities within and outside the ant nest is fairly unknown. Timing of individual behaviors and synchronization among individuals is needed to generate a coordinated collective response and to maintain colony function. The aim of this thesis was to investigate the presence of a circadian clock in different worker castes, and to determine the daily timing of their behavioral tasks within the colonies of two nectar-collecting Camponotus species. In chapter I, I describe the general temporal organization of work throughout the worker life in the species Camponotus rufipes. Continuous tracking of behavioral activity of individually- marked workers for up to 11 weeks in subcolonies revealed an age-dependent division of labor between interior and exterior workers. After eclosion, the fairly immobile young ants were frequently nurtured by older nurses, yet they started nursing the brood themselves within the first 48 hours of their life. Only 60\% of workers switched to foraging at an age range of one to two weeks, likely because of the reduced needs within the small scale of the subcolonies. Not only the transition rates varied between subcolonies, but also the time courses of the task sequences between workers did, emphasizing the timed allocation of workers to different tasks in response to colony needs. Most of the observed foragers were present outside the nest only during the night, indicating a distinct timing of this behavioral activity on a daily level as well. As food availability, humidity and temperature levels were kept constant throughout the day, the preference for nocturnal activity seems to be endogenous and characteristic for C. rufipes. The subsequent monitoring of locomotor activity of workers taken from the subcolonies revealed the presence of a functional endogenous clock already in one-day old ants. As some nurses displayed activity rhythms in phase with the foraging rhythm, a synchronization of these in-nest workers by social interactions with exterior workers can be hypothesized. Do both castes use their endogenous clock to schedule their daily activities within the colony? In chapter II, I analyzed behavioral activity of C. rufipes foragers and nurses within the social context continuously for 24 hours. As time-restricted access to food sources may be one factor affecting daily activities of ants under natural conditions, I confronted subcolonies with either daily pulses of food availability or ad libitum feeding. Under nighttime and ad libitum feeding, behavioral activity of foragers outside the nest was predominantly nocturnal, confirming the results from the simple counting of exterior workers done in chapter I. Foragers switched to diurnality during daytime feeding, demonstrating the flexible and adaptive timing of a daily behavior. Because they synchronized their activity with the short times of food availability, these workers showed high levels of inactivity. Nurses, in contrast, were active all around the clock independent of the feeding regime, spending their active time largely with feeding and licking the brood. After the feeding pulses, however, a short bout of activity was observed in nurses. During this time period, both castes increasingly interacted via trophallaxis within the nest. With this form of social zeitgeber, exterior workers were able to entrain in-nest workers, a phenomenon observed already in chapter I. Under the subsequent monitoring of locomotor activity under LD conditions the rhythmic workers of both castes were uniformly nocturnal independent of the feeding regime. This endogenous activity pattern displayed by both worker castes in isolation was modified in the social context in adaption to task demands. Chapter III focuses on the potential factors causing the observed plasticity of daily rhythms in the social context in the ant C. rufipes. As presence of brood and conspecifics are likely indicators of the social context, I tested the effect of these factors on the endogenous rhythms of otherwise isolated individuals. Even in foragers, the contact to brood triggered an arrhythmic activity pattern resembling the arrhythmic behavioral activity pattern seen in nurses within the social context. As indicated in chapter I and II, social interaction could be one crucial factor for the synchronization of in nest activities. When separate groups were entrained to phase-shifted light-dark-cycles and monitored afterwards under constant conditions in pairwise contact through a mesh partitioning, both individuals shifted parts of their activity towards the activity period of the conspecific. Both social cues modulated the endogenous rhythms of workers and contribute to the context dependent plasticity in ant colonies. Although most nursing activities are executed arrhythmically throughout the day (chapter II), previous studies reported rhythmic translocation events of the brood in Camponotus nurses. As this behavior favors brood development, the timing of the translocations within the dark nest seems to be crucial. In chapter IV, I tracked translocation activity of all nurses within subcolonies of C. mus. Under the confirmed synchronized conditions of a LD-cycle, the daily pattern of brood relocation was based on the rhythmic, alternating activity of subpopulations with preferred translocation direction either to the warm or to the cold part of the temperature gradient at certain times of the day. Although the social interaction after pulse feeding had noticeable effects on the in-nest activity in C. rufipes (chapter I and II), it was not sufficient to synchronize the brood translocation rhythm of C. mus under constant darkness (e.g. when other zeitgebers were absent). The free-running translocation activity in some nurses demonstrated nevertheless the involvement of an endogenous clock in this behavior, which could be entrained under natural conditions by other potential non-photic zeitgebers like temperature and humidity cycles. Daily cycling of temperature and humidity could not only be relevant for in-nest activities, but also for the foraging activity outside the nest. Chapter V focuses on the monitoring of field foraging rhythms in the sympatric species C. mus and C. rufipes in relation to abiotic factors. Although both species had comparable critical thermal limits in the laboratory, foragers in C. mus were strictly diurnal and therefore foraged under higher temperatures than the predominant nocturnal foragers in C. rufipes. Marking experiments in C. rufipes colonies with higher levels of diurnal activity revealed the presence of temporally specialized forager subpopulations. These results suggest the presence of temporal niches not only between the two Camponotus species, but as well between workers within colonies of the same species. In conclusion, the temporal organization in colonies of Camponotus ants involves not only the scheduling of tasks performed throughout the worker life, but also the precise timing of daily activities. The necessary endogenous clock is already functioning in all workers after eclosion. Whereas the light-dark cycle and food availability seem to be the prominent zeitgebers for foragers, nurses may rely more on non-photic zeitgeber like social interaction, temperature and humidity cycles.}, subject = {circadian clocks}, language = {en} } @phdthesis{Schwenk2018, author = {Schwenk, Nicola}, title = {Seeing the Light: Synthesis of Luminescent Rhodacyclopentadienes and Investigations of their Optical Properties and Catalytic Activity}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-149550}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Luminescent organotransition metal complexes are of much current interest. As the large spin-orbit coupling of 2nd and 3rd row transition metals usually leads to rapid intersystem crossing from S1 to T1, which enables phosphorescence, there is a special interest in using triplet-emitting materials in organic or organometallic light emitting diodes (OLEDs). Marder et al. have found that, reductive coupling of both para-R-substituted diarylbutadiynes and diaryldodecatetraynes on Rh(PMe3)4X leads to quantitative yields of bis(arylethynyl)-rhodacyclopentadienes with complete regiospecificity (R = BMes2, H, Me, OMe, SMe, CF3, CN, CO2Me, NMe2, NO2, C≡C-TMS and X = -C≡C-TMS, -C≡C-C6H4-4-NMe2, -C≡C-C≡C-C6H4-4-NPh2, Me, Cl).47,49 Unexpectedly, these compounds show intense fluorescence rather than phosphorescence (ɸf = 0.33-0.69, t = 1.2 3.0 ns). The substituent R has a significant influence on the photophysical properties, as absorption and emission are both bathochromically shifted compared to R = H, especially for R = π-acceptor. To clarify the mechanism of the formation of the rhodacyclopentadienes, and to investigate further their unique photophysical properties, a series of novel, luminescent rhodacyclopentadienes with dithiocarbamate as a bidentate ligand at the rhodium centre has been synthesised and characterised (R = NO2, CO2Me, Me, NMe2, SMe, Ar = C6F4-4-OMe). The rhodacyclopentadienes have been formed via reductive coupling of diaryl undecatetraynes with [Rh(k2-S,S`-S2CNEt2)(PMe3)2]. The structures of a series of such compounds were solved by single crystal X-ray diffraction and are discussed in this work. The compounds were fully characterised via NMR, UV/Vis and photoluminescence spectroscopy as well as by elemental analysis, high-resolution mass spectrometry (HRMS) and X-ray diffraction. When heating the reactions, another isomer is formed to a certain extent. The so-called dibenzorhodacyclopentadienes already appeared during earlier studies of Marder et al., when acetylacetonate (acac) was employed as the bidentate ligand at the Rh-centre. They are probably formed via a [4+2] cycloaddition reaction and C-H activation, followed by a β-H shift. Use of the perfluorinated phenyl moiety Ar = C6F4-4-OMe provided a total new insight into the mechanism of formation of the rhodacyclopentadiene isomers and other reactions. Besides the formation of the expected rhodacyclopentadiene, a bimetallic compound was generated, isolated and characterised via X-ray crystallography and NMR spectroscopy, elemental analysis and high resolution mass spectrometry. For further comparison, analogous reactions with [Rh(k2 S,S` S2CNEt2)(PPh3)2] and a variety of diaryl undecatetraynes (R = NO2 CO2Me, Me, NMe2, SMe, Ar = C6F4-4-OMe) were carried out. They also yield the expected rhodacyclopentadienes, but quickly react with a second or even third equivalent of the tetraynes to form, catalytically, alkyne cyclotrimerisation products, namely substituted benzene derivatives (dimers and trimers), which are highly luminescent. The rhodacyclopentadienes (R = NO2, CO2Me, Me, SMe, Ar = C6F4-4-OMe) are stable and were isolated. The structures of a series of these compounds were obtained via single crystal X-ray crystallography and the compounds were fully characterised via NMR, UV/Vis and photoluminescence spectroscopy as well as by elemental analysis and HRMS. Another attempt to clarify the mechanism of formation of the rhodacyclopentadienes involved reacting a variety of diaryl 1,3-butadiynes (R = CO2Me, Me, NMe2, naphthyl) with [Rh(k2 S,S` S2CNEt2)(PMe3)2]. The reactions stop at an intermediate step, yielding a 1:1 trans π-complex, confirmed by single crystal X-ray diffraction and NMR spectroscopy. Only after several weeks, or under forcing conditions (µw / 80 °C, 75 h), the formation of another major product occurs, having bound a second diaryl 1,3-butadiyne. Based on earlier results of Murata, the product is identified as an unusual [3+2] cycloaddition product, ϭ-bound to the rhodium centre.}, subject = {Rhodium}, language = {en} } @phdthesis{HebronMwalwisi2018, author = {Hebron Mwalwisi, Yonah}, title = {Assessment of Counterfeit and Substandard Antimalarial Medicines using High Performance Thin Layer Chromatography and High Performance Liquid Chromatography}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-145821}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Although the prevalence of substandard and counterfeit pharmaceutical products is a global problem, it is more critical in resource-constrained countries. The national medicines regulatory authorities (MNRA) in these countries have limited resources to cater for regular quality surveillance programmes aimed at ensuring that medicines in circulation are of acceptable quality. Among the reasons explained to hinder the implementation of these strategies is that compendial monographs are too complicated and require expensive infrastructures in terms of environment, equipment and consumables. In this study it was therefore aimed at developing simple, precise, and robust HPLC and HPTLC methods utilizing inexpensive, readily available chemicals (methanol and simple buffers) that can determine the APIs, other API than declared one, and which are capable of impurity profiling. As an outcome of this study, three isocratic and robust HPLC and two HPTLC methods for sulfadoxine, sulfalene, pyrimethamine, primaquine, artesunate, as well as amodiaquine have been developed and validated. All HPLC methods are operated using an isocratic elution mode which means they can be implemented even with a single pump HPLC system and standard C18 columns. The densitometric sulfadoxine/sulfalene and pyrimethamine method utilizes standard TLC plates as well as inexpensive, readily available and safe chemicals (toluene, methanol, and ethyl acetate), while that for artesunate and amodiaquine requires HPTLC plates as well as triethylamine and acetonitrile due to challenges associated with the analysis of amodiaquine and poorly the detectable artesunate. These HPTLC methods can be implemented as alternative to those requiring HPLC equipment e.g. in countries that already have acquired densitometer equipment. It is understood that HPTLC methods are less sensitive, precise and accurate when compared to HPLC methods, but this hindrance can easily be addressed by sending representative samples to third party quality control laboratories where the analytical results are verified using compendial HPLC methods on a regular basis. It is therefore anticipated that the implementation of these methods will not only address the problem of limited resources required for medicines quality control but also increase the number of monitored targeted antimalarial products as well as the number of resource- constrained countries participating in quality monitoring campaigns. Moreover, the experiences and skills acquired within this work will be applied to other API groups, e. g. antibiotics, afterwards.}, subject = {Instrumentelle Analytik}, language = {en} } @phdthesis{Schuecker2018, author = {Sch{\"u}cker, Katharina}, title = {The molecular architecture of the meiotic chromosome axis as revealed by super-resolution microscopy}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-144199}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {During meiosis proteins of the chromosome axis are important for monitoring chromatin structure and condensation, for pairing and segregation of chromosomes, as well as for accurate recombination. They include HORMA-domain proteins, proteins of the DNA repair system, synaptonemal complex (SC) proteins, condensins and cohesins. To understand more about their function in shaping the meiotic chromosome it is crucial to establish a defined model of their molecular architecture. Up to now their molecular organization was analysed using conventional methods, like confocal scanning microscopy (CLSM) and transmission electron microscopy (TEM). Unfortunately, these techniques are limited either by their resolution power or their localization accuracy. In conclusion, a lot of data on the molecular organization of chromosome axis proteins stays elusive. For this thesis the molecular structure of the murine synaptonemal complex (SC) and the localization of its proteins as well as of three cohesins was analysed with isotropic resolution, providing new insights into their architecture and topography on a nanoscale level. This was done using immunofluorescence labelling in combination with super-resolution microscopy, line profiles and average position determination. The results show that the murine SC has a width of 221.6 nm ± 6.1 nm including a central region (CR) of 148.2 nm ± 2.6 nm. In the CR a multi-layered organization of the central element (CE) proteins was verified by measuring their strand diameters and strand distances and additionally by imaging potential anchoring sites of SYCP1 (synaptonemal complex protein 1) to the lateral elements (LEs). We were able to show that the two LEs proteins SYCP2 and SYCP3 do co-localize alongside their axis and that there is no significant preferential localization towards the inner LE axis of SYCP2. The presented results also predict an orderly organization of murine cohesin complexes (CCs) alongside the chromosome axis in germ cells and support the hypothesis that cohesins in the CR of the SC function independent of CCs. In the end new information on the molecular organization of two main components of the murine chromosome axis were retrieved with nanometer precision and previously unknown details of their molecular architecture and topography were unravelled.}, subject = {Meiose}, language = {en} } @phdthesis{Carstensen2018, author = {Carstensen, Anne Carola}, title = {Identification of novel N-MYC interacting proteins reveals N-MYC interaction with TFIIIC}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-143658}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {N-MYC is a member of the human MYC proto-oncogene family, which comprises three transcription factors (C-, N- and L-MYC) that function in multiple biological processes. Deregulated expression of MYC proteins is linked to tumour initiation, maintenance and progression. For example, a large fraction of neuroblastoma displays high N-MYC levels due to an amplification of the N-MYC encoding gene. MYCN-amplified neuroblastoma depend on high N-MYC protein levels, which are maintained by Aurora-A kinase. Aurora-A interaction with N-MYC interferes with degradation of N-MYC via the E3 ubiquitin ligase SCFFBXW7. However, the underlying mechanism of Aurora-A-mediated stabilisation of N-MYC remains to be elucidated. To identify novel N-MYC interacting proteins, which could be involved in N-MYC stabilisation by Aurora-A, a proteomic analysis of purified N-MYC protein complexes was conducted. Since two alanine mutations in MBI of N-MYC, T58A and S62A (N-MYC mut), disable Aurora-A-mediated stabilisation of N-MYC, N-MYC protein complexes from cells expressing either N-MYC wt or mut were analysed. Proteomic analysis revealed that N-MYC interacts with two deubiquitinating enzymes, USP7 and USP11, which catalyse the removal of ubiquitin chains from target proteins, preventing recognition by the proteasome and subsequent degradation. Although N-MYC interaction with USP7 and USP11 was confirmed in subsequent immunoprecipitation experiments, neither USP7, nor USP11 was shown to be involved in the regulation of N-MYC stability. Besides USP7/11, proteomic analyses identified numerous additional N-MYC interacting proteins that were not described to interact with MYC transcription factors previously. Interestingly, many of the identified N-MYC interaction partners displayed a preference for the interaction with N-MYC wt, suggesting a MBI-dependent interaction. Among these were several proteins, which are involved in three-dimensional organisation of chromatin domains and transcriptional elongation by POL II. Not only the interaction of N-MYC with proteins functioning in elongation, such as the DSIF component SPT5 and the PAF1C components CDC73 and CTR9, was validated in immunoprecipitation experiments, but also with the POL III transcription factor TFIIIC and topoisomerases TOP2A/B. ChIP-sequencing analysis of N-MYC and TFIIIC subunit 5 (TFIIIC5) revealed a large number of joint binding sites in POL II promoters and intergenic regions, which are characterised by the presence of a specific motif that is highly similar to the CTCF motif. Additionally, N-MYC was shown to interact with the ring-shaped cohesin complex that is known to bind to CTCF motifs and to assist the insulator protein CTCF. Importantly, individual ChIP experiments demonstrated that N-MYC, TFIIIC5 and cohesin subunit RAD21 occupy joint binding sites comprising a CTCF motif. Collectively, the results indicate that N-MYC functions in two biological processes that have not been linked to MYC biology previously. Furthermore, the identification of joint binding sites of N-MYC, TFIIIC and cohesin and the confirmation of their interaction with each other suggests a novel function of MYC transcription factors in three-dimensional organisation of chromatin.}, subject = {Biologie}, language = {en} } @phdthesis{Gupta2018, author = {Gupta, Shishir Kumar}, title = {Re-annotation of Camponotus floridanus Genome and Characterization of Innate Immunity Transcriptome Responses to Bacterial Infections}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-140168}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {The sequencing of several ant genomes within the last six years open new research avenues for understanding not only the genetic basis of social species but also the complex systems such as immune responses in general. Similar to other social insects, ants live in cooperative colonies, often in high densities and with genetically identical or closely related individuals. The contact behaviours and crowd living conditions allow the disease to spread rapidly through colonies. Nevertheless, ants can efficiently combat infections by using diverse and effective immune mechanisms. However, the components of the immune system of carpenter ant Camponotus floridanus and also the factors in bacteria that facilitate infection are not well understood. To form a better view of the immune repository and study the C. floridanus immune responses against the bacteria, experimental data from Illumina sequencing and mass-spectrometry (MS) data of haemolymph in normal and infectious conditions were analysed and integrated with the several bioinformatics approaches. Briefly, the tasks were accomplished in three levels. First, the C. floridanus genome was re-annotated for the improvement of the existing annotation using the computational methods and transcriptomics data. Using the homology based methods, the extensive survey of literature, and mRNA expression profiles, the immune repository of C. floridanus were established. Second, large-scale protein-protein interactions (PPIs) and signalling network of C. floridanus were reconstructed and analysed and further the infection induced functional modules in the networks were detected by mapping of the expression data over the networks. In addition, the interactions of the immune components with the bacteria were identified by reconstructing inter-species PPIs networks and the interactions were validated by literature. Third, the stage-specific MS data of larvae and worker ants were analysed and the differences in the immune response were reported. Concisely, all the three omics levels resulted to multiple findings, for instance, re-annotation and transcriptome profiling resulted in the overall improvement of structural and functional annotation and detection of alternative splicing events, network analysis revealed the differentially expressed topologically important proteins and the active functional modules, MS data analysis revealed the stage specific differences in C. floridanus immune responses against bacterial pathogens. Taken together, starting from re-annotation of C. floridanus genome, this thesis provides a transcriptome and proteome level characterization of ant C. floridanus, particularly focusing on the immune system responses to pathogenic bacteria from a biological and a bioinformatics point of view. This work can serve as a model for the integration of omics data focusing on the immuno-transcriptome of insects.}, subject = {Camponotus floridanus}, language = {en} }