@phdthesis{Fischer2024, author = {Fischer, Jonas Maria}, title = {Ph{\"a}notyp und Funktion von Follikul{\"a}ren Helfer Zell-{\"a}hnlichen T-Zellen im entz{\"u}ndeten Gelenk von Patientinnen und Patienten mit Juveniler Idiopathischer Arthritis}, doi = {10.25972/OPUS-36302}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-363022}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Innerhalb der Juvenilen Idiopathischen Arthritis (JIA) bilden Patienten mit Antinukle{\"a}ren Antik{\"o}rpern (ANA) Subgruppen-{\"u}bergreifend eine klinisch homogene Erkrankungsgruppe. Ob diesen klinischen Gemeinsamkeiten jedoch auch eine einheitliche Pathogenese zugrunde liegt, ist bisher unbekannt. Sogenannte periphere T-Helferzellen (TPH) spielen im Kontext zahlreicher Autoimmunerkrankungen eine entscheidende Rolle bei der Aktivierung autoreaktiver B-Zellen. Ziel dieser Arbeit war daher die ph{\"a}notypische und funktionelle Analyse von PD-1hiCXCR5-CD4+ TPH-Zellen, sowie deren Verteilung in der Synovialfl{\"u}ssigkeit von Patienten unterschiedlicher Subgruppen der JIA. Hierzu wurden Ph{\"a}notyp und Zytokinprofil von PD-1hiCD4+ T-Zellen durchflusszytometrisch analysiert. Der funktionelle Einfluss von PD-1hiCD4+ T-Zellen auf die B-Zell-Differenzierung wurde mittels in vitro Kokulturen FACS-sortierter TPH-Zellen der Synovialfl{\"u}ssigkeit untersucht. IL-21- und IL-17-produzierende T-Ged{\"a}chtniszellen der Synovialfl{\"u}ssigkeit zeigten eine negative Korrelation zueinander. Die IL-21-Produktion ging besonders von PD-1hiCXCR5-HLA-DR+CD4+ T-Zellen aus, welche besonders in den Gelenken ANA-positiver JIA-Patienten akkumulierten. Diese Population zeigte ph{\"a}notypische {\"A}hnlichkeit mit TPH-Zellen und leistete in vitro effiziente B-Zell-Hilfe zu Plasmazelldifferenzierung und Immunglobulinsekretion, induzierte jedoch zudem einen CD21lo/-CD11c+T-bet+ Ph{\"a}notyp in B-Zellen. Passend hierzu bestand auch ex vivo eine signifikante Korrelation zwischen TPH und CD21lo/-CD11c+T-bet+ doppelt-negativen B-Zellen (BDN). Es konnte also die Expansion einer spezifischen T-Zellpopulation mit ph{\"a}notypischen und funktionellen Charakteristika von TPH-Zellen beobachtet und deren funktioneller Zusammenhang mit CD21lo/-CD11c+T-bet+ BDN in der Synovialfl{\"u}ssigkeit von JIA-Patienten aufgezeigt werden. Dies k{\"o}nnte die Autoimmunantwort auf ubiquit{\"a}re Autoantigene innerhalb betroffener Gelenke ANA-positiver JIA-Patienten widerspiegeln.}, subject = {Rheumatologie}, language = {de} } @phdthesis{Geissendoerfer2024, author = {Geißend{\"o}rfer, Lisa}, title = {The Macroeconomic Dimensions of Credit: A Comprehensive Analysis of Finance, Inequality and Growth}, doi = {10.25972/OPUS-37003}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-370037}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Besonders einflussreich f{\"u}r das moderne Verst{\"a}ndnis zur makro{\"o}konomischen Rolle von Banken und Kredit ist die monet{\"a}re Wachstumstheorie von Schumpeter. Ausgehend von dieser wird in dieser Dissertation die makro{\"o}konomische Rolle des Finanzsystems f{\"u}r die (1) Erzeugung von Wirtschaftswachstum, (2) Lenkung von {\"o}konomischen Ressourcen und (3) Verteilung von Wohlstand untersucht. In Kapitel 3 wird zun{\"a}chst empirisch gezeigt, dass 1.) ein positiver Zusammenhang zwischen dem Wachstum von Krediten und Wirtschaftswachstum besteht, auch f{\"u}r entwickelte L{\"a}nder, 2.) kein empirischer Zusammenhang von Haushaltssparen und Wirtschaftswachstum festgestellt werden kann, und 3.) auf l{\"a}nderspezifischer Ebene sowohl positive, als auch negative und insignifikante Effekte von Kredit auf Wirtschaftswachstum existieren. Damit zeigt sich eine breite empirische Evidenz f{\"u}r Schumpeters monet{\"a}re Hypothesen. Eine besonders interessante Anwendung von Schumpeters Wachstumstheorie zeigt sich in China. Die Ergebnisse der empirischen Analyse legen nahe, dass es generell einen positiven Zusammenhang zwischen Kredit- und Wirtschaftswachstum in China gibt, der aber nicht linear in Bezug auf Regionen, Zeitpunkte und Gr{\"o}ße des Finanzsystems ist. Weiterhin deuten die Ergebnisse darauf hin, dass die kreditfinanzierte Industriepolitik in China zu mehr Investitionen und BIP-Wachstum beigetragen haben k{\"o}nnte, wobei es jedoch Nichtlinearit{\"a}ten zwischen einzelnen Branchen und Unternehmenstypen gibt. Zuletzt wird in Kapitel 5 die Frage aufgeworfen, welche Rolle das Finanzsystem bei der Verteilung des Wohlstands spielt. W{\"a}hrend Kredite an Haushalte und Unternehmen, zusammen mit Indikatoren zum Arbeits- und Sparverhalten, sowie zur Altersstruktur der Bev{\"o}lkerung, die wichtigsten Determinanten von Verm{\"o}gensungleichheit sind, zeigen sich in der Beziehung von Krediten und Verm{\"o}gensungleichheit ebenfalls verschiedene Nichtlinearit{\"a}ten, u.a. im Bezug auf den Entwicklungsstand von Finanzsystemen und Wohneigentumsquoten.}, subject = {Kredit}, language = {en} } @phdthesis{Chen2024, author = {Chen, Xinyu}, title = {How natural walking changes occipital alpha oscillations and concurrently modulates cognitive processes}, doi = {10.25972/OPUS-35295}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-352958}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Humans actively interact with the world through a wide range of body movements. To understand human cognition in its natural state, we need to incorporate ecologically relevant body movement into our account. One fundamental body movement during daily life is natural walking. Despite its ubiquity, the impact of natural walking on brain activity and cognition has remained a realm underexplored. In electrophysiology, previous studies have shown a robust reduction of ongoing alpha power in the parieto-occipital cortex during body movements. However, what causes the reduction of ongoing alpha, namely whether this is due to body movement or prevalent sensory input changes, was unknown. To clarify this, study 1 was performed to test if the alpha reduction is dependent on visual input. I compared the resting state alpha power during natural walking and standing, in both light and darkness. The results showed that natural walking led to decreased alpha activity over the occipital cortex compared to standing, regardless of the lighting condition. This suggests that the movement-induced modulation of occipital alpha activity is not driven by visual input changes during walking. I argue that the observed alpha power reduction reflects a change in the state of the subject based on disinhibition induced by walking. Accordingly, natural walking might enhance visual processing and other cognitive processes that involve occipital cortical activity. I first tested this hypothesis in vision. Study 2 was performed to examine the possible effects of natural walking across visual processing stages by assessing various neural markers during different movement states. The findings revealed an amplified early visual response, while a later visual response remain unaffected. A follow-up study 3 replicated the walking-induced enhancement of the early visual evoked potential and showed that the enhancement was dependent on specific stimulus-related parameters (eccentricity, laterality, distractor presence). Importantly, the results provided evidence that the enhanced early visual responses are indeed linked to the modulation of ongoing occipital alpha power. Walking also modulated the stimulus-induced alpha power. Specifically, it showed that when the target appeared in the fovea area without a distractor, walking exhibited a significantly reduced modulation of alpha power, and showed the largest difference to standing condition. This effect of eccentricity indicates that during later visual processing stages, the visual input in the fovea area is less processed than in peripheral areas while walking. The two visual studies showed that walking leads to an enhancement in temporally early visual processes which can be predicted by the walking-induced change in ongoing alpha oscillation likely marking disinhibition. However, while walking affects neural markers of early sensory processes, it does not necessarily lead to a change in the behavioural outcome of a sensory task. The two visual studies suggested that the behavioural outcome seems to be mainly based on later processing stages. To test the effects of walking outside the visual domain, I turned to audition in study 4. I investigated the influence of walking in a particular path vs. simply stepping on auditory processing. Specifically, the study tested whether enhanced processing due to natural walking can be found in primary auditory brain activity and whether the processing preferences are dependent on the walking path. In addition, I tested whether the changed spatial processing that was reported in previous visual studies can be seen in the auditory domain. The results showed enhanced sensory processing due to walking in the auditory domain, which was again linked to the modulation of occipital alpha oscillation. The auditory processing was further dependent on the walking path. Additionally, enhanced peripheral sensory processing, as found in vision, was also present in audition. The findings outside vision supported the idea of natural walking affecting cognition in a rather general way. Therefore in my study 5, I examined the effect of natural walking on higher cognitive processing, namely divergent thinking, and its correlation with the modulation of ongoing alpha oscillation. I analyzed alpha oscillations and behavioural performance during restricted and unrestricted movement conditions while subjects completed a Guilford's alternate uses test. The results showed that natural walking, as well as missing body restriction, reduces the occipital alpha ongoing power independent of the task phase which goes along with higher test scores. The occipital alpha power reduction can therefore be an indicator of a changed state that allows improved higher cognitive processes. In summary, the research presented in this thesis highlights that natural walking can change different processes in the visual and auditory domain as well as higher cognitive processes. The effect can be attributed to the movement of natural walking itself rather than to changes in sensory input during walking. The results further indicate that the walking-induced modulation of ongoing occipital alpha oscillations drives the cognitive effects. We therefore suggest that walking changes the inhibitory state which can influence awareness and attention. Such a mechanism could facilitate an adaptive enhancement in cognitive processes and thereby optimize movement-related behaviour such as navigation.}, subject = {Walking}, language = {en} } @phdthesis{Hadi2024, author = {Hadi, Naji Said Aboud}, title = {In vitro Studies on the Genotoxicity of Selected Pyrrolizidine Alkaloids}, doi = {10.25972/OPUS-37037}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-370376}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Cancer is one of the leading causes of death worldwide. Toxic contaminants in human food or medicinal products, such as substances like pyrrolizidine alkaloids (PAs), have been thought to contribute to cancer incidence. PAs are found in many plant species as secondary metabolites, and they may affect humans through contaminated food sources, herbal medicines, and dietary supplements. Hundreds of compounds belonging to PAs have been identified, differing in their chemical structures, either in their necine base moiety or esterification at their necic acid moiety. PAs undergo hepatic metabolism, and after this process, they can induce hepatotoxicity, genotoxicity, and carcinogenicity. However, the mechanism of inducing genotoxicity and carcinogenicity is still unclear and warrants further investigation. Therefore, the present study aims to investigate the mechanism of genotoxicity induced by selected PAs with different chemical structures in in vitro systems. Primarily, human hepatoma HepG2 cells were utilized, and in co-culture, metabolically active HepG2 cells were combined with non-metabolically active human cervical HeLa H2B-GFP cells. First, the genotoxicity of the PAs europine, lycopsamine, retrorsine, riddelliine, seneciphylline, echimidine, and lasiocarpine was investigated in the cytokinesis-block micronucleus (CBMN) assay. All seven selected PAs caused the formation of micronuclei in a dose-dependent manner, with the maximal increase of micronucleus formation ranging from 1.64 to 2.0 fold. The lowest concentrations at which significant induction of micronuclei was found were 3.2 µM for lasiocarpine and riddelliine, 32 µM for retrorsine and echimidine, and 100 µM for seneciphylline, europine, and lycopsamine. These results confirmed previously published potency rankings in the micronucleus assay. The same PAs, with the exception of seneciphylline, were also investigated in a crosslink-modified comet assay, and reduced tail formation after hydrogen peroxide treatment was found in all diester-type PAs. Meanwhile, an equimolar concentration of the monoesters europine and lycopsamine did not significantly reduce DNA migration. Thus, the crosslinking activity was related to the ester type. Next, the role of metabolic enzymes and membrane transporters in PA-induced genotoxicity was assessed. Ketoconazole (CYP 450-3A4 inhibitor) prevented lasiocarpine-induced micronucleus formation completely, while furafylline (CYP 450-1A2 inhibitor) reduced lasiocarpine-induced micronucleus formation, but did not abolish it completely. This implies that the CYP 450 enzymes play an important role in PA-induced genotoxicity. Carboxylesterase 2 enzyme (CES 2) is commonly known to be involved in the detoxification of xenobiotics. Loperamide (CES 2 inhibitor) yielded an increased formation of lasiocarpine-induced micronuclei, revealing a possible role of CES-mediated detoxification in the genotoxicity of lasiocarpine. Also, intracellular glutathione (GSH) plays an important role in the detoxification of xenobiotics or toxins in the cells. Cells which had been pretreated with L-buthionine sulfoximine (BSO) to reduce GSH content were significantly more sensitive for the induction of micronucleus formation by lasiocarpine revealing the importance of GSH in PA-induced genotoxicity. Quinidine (Q) and nelfinavir (NFR) are OCT1 and OATP1B1 influx transporter inhibitors, respectively, which reduced micronucleus induction by lasiocarpine (only quinidine significantly), but not completely, pointing to a relevance of OCT1 for PA uptake in HepG2 cells. Verapamil (V) and benzbromarone (Bz) are MDR1 and MRP2 efflux transporter inhibitors, respectively, and they caused a slightly increased micronucleus induction by lasiocarpine (significant only for benzbromarone) thus, revealing the role of efflux transporters in PA-induced genotoxicity. The mechanistic approach to PA-induced genotoxicity was further studied based on oxidative stress via the formation of reactive oxygen species (ROS) in HepG2 cells. Overproduction of ROS can cross-link cellular macromolecules such as DNA, leading to genomic damage. An equimolar concentration of 10 µM of lasiocarpine (open-diester PA), riddelliine (cyclic-diester PA), and europine (monoester) significantly induced ROS production, with the highest ROS generation observed after lasiocarpine treatment, followed by riddelliine and then europine. No significant increase in ROS production was found with lycopsamine (10 µM; monoester PA), even at a higher concentration (320 µM). The generation of ROS by these PAs was further analyzed for confirmation by using 5 mM of the thiol radical scavenger antioxidant N-acetyl cysteine (NAC) combined with lasiocarpine, riddelliine, or europine. This analysis yielded a significant decrease in ROS after combining NAC with lasiocarpine, riddelliine, and europine. In addition, lasiocarpine, riddelliine, and europine induced a loss of mitochondrial membrane potential, pointing to mitochondria as the source of ROS generation. In vivo, hepatic sinusoidal epithelial cells (HSECs) are known to be damaged first by PAs after hepatic metabolization, but HSECs themselves do not express the required metabolic enzymes for activation of PAs. To mimic this situation, HepG2 cells were used to metabolically activate PA in a co-culture with HeLa H2B-GFP cells as non-metabolically active neighbours. Due to the green fluorescent GFP label the HeLa cells could be identified easily based in the co-culture. The PAs europine, riddelliine and lasiocarpine induced micronucleus formation in HepG2 cells, and in HeLa H2B-GFP cells co-cultured with HepG2 cells, but not in HeLa H2B-GFP cells cultured alone. Metabolic inhibition of CYP 450 enzymes with ketoconazole abrogated micronucleus formation induced by the same PAs tested in the co-culture. The efflux transporter inhibitors verapamil and benzbromarone reduced the micronucleus formation in the co-culture. Furthermore, mitotic disturbances as an additional genotoxic mechanism of action were observed in HepG2 cells and in HeLa H2B-GFP cells co-cultured with HepG2 cells, but not in HeLa H2B-GFP cells cultured alone. Overall, we were able to show that PAs were activated by HepG2 cells and the metabolites induced genomic damage in co-cultured non-metabolically active green HeLa cells. Finally, in HepG2 cells as well as the co-culture, combinations of PAs lasiocarpine and riddelliine favoured an additive effect rather than synergism. Thus, this study therefore provides support that the assumption of dose-addition can be applied in the characterization of the genotoxicity risk of PAs present in a mixture.}, subject = {Pyrrolizidinalkaloide}, language = {en} } @phdthesis{Schrauth2024, author = {Schrauth, Monika Maria}, title = {Therapeutisches Drug Monitoring (TDM) von Kindern und Jugendlichen unter Pharmakotherapie mit Escitalopram und Mirtazapin}, doi = {10.25972/OPUS-37022}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-370222}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Diese retrospektive, naturalistische Studie besch{\"a}ftigte sich mit dem Therapeutischen Drug Monitoring von Kindern und Jugendlichen unter Psychopharmakotherapie mit Escitalopram und Mirtazapin. Die Datenauswertung erfolgte anhand von klinischen Routinedaten aus dem TDM-Service des Speziallabors f{\"u}r TDM des Zentrums f{\"u}r psychische Gesundheit des Universit{\"a}tsklinikums W{\"u}rzburg. In der Studie wurden die Zusammenh{\"a}nge zwischen Dosis, Serumkonzentration und positiver bzw. negativer klinischer Effekte, auch im Hinblick auf m{\"o}gliche Einflussfaktoren wie Geschlecht, Alter, BMI-Status, Komedikation und Raucherstatus, untersucht. Ein weiteres Ziel der Arbeit war, Hinweise f{\"u}r die Definition eines altersspezifischen therapeutischen Referenzbereiches (Diagnose{\"u}bergreifend und Depressions-spezifisch) f{\"u}r Kinder und Jugendliche beider Medikamente zu gewinnen. Hierf{\"u}r wurden f{\"u}r Escitalopram 41 Patienten im Alter zwischen elf und 18 Jahren und f{\"u}r Mirtazapin 23 Patienten im Alter von sechs bis 18 Jahren eingeschlossen und Daten zur Demographie, Serumkonzentrationsbestimmungen im Steady State, Schwere der Erkrankung (CGI-S), Therapieeffektivit{\"a}t (CGI-I) und Nebenwirkungen (UKU-Skala) ausgewertet. Escitalopram: Die mittlere Tagesdosis betrug 14,8 mg, wobei die Serumkonzentrationen mit einer mittleren Konzentration von 32,2 ng/ml (SD= 26,6 ng/ml) zwischen sechs und 109 ng/ml schwankten. Bei 63,4 \% der Patienten lag die ermittelte Serumkonzentration in dem f{\"u}r Erwachsene definierten therapeutischen Referenzbereich (15-80 ng/ml). Zwischen der Tagesdosis und der Serumkonzentration ergab sich eine auf dem 1 \%-Niveau signifikante positive lineare Beziehung (rs= 0,46; p= 0,003). 65,9 \% der Patienten respondierten seit Behandlungsbeginn. Zwischen der Serumkonzentration und dem therapeutischen Effekt (rs= 0,193; p= 0,282) und zwischen der Serumkonzentration und den Nebenwirkungen (r= 0,127; p= 0,467) konnte jeweils kein signifikanter Zusammenhang gefunden werden. Die Nebenwirkungsrate lag bei 25,7 \%, wobei am h{\"a}ufigsten Spannung und innere Unruhe dokumentiert wurde. Mit der Idee, die Definition f{\"u}r den vorl{\"a}ufigen therapeutischen Referenzbereich sowohl der Konsensus-Leitlinie der AGNP (Hiemke et al., 2018) als auch von Hiemke (2019) zu ber{\"u}cksichtigen, wird als vorl{\"a}ufiger therapeutischer Referenzbereich f{\"u}r Escitalopram f{\"u}r Kinder und Jugendliche mit Depression eine untere Grenze zwischen 10 ng/ml bis 15 ng/ml und eine obere Grenze von 50 ng/ml vorgeschlagen. Dieser Bereich liegt niedriger als der f{\"u}r erwachsene Patienten definierte Bereich f{\"u}r Escitalopram von 15 bis 80 ng/ml. Mirtazapin: Die mittlere Tagesdosis betrug 28,6 mg, wobei die Serumkonzentrationen mit einer mittleren Konzentration von 40,8 ng/ml (SD= 28,1 ng/ml) zwischen 13 und 130 ng/ml schwankten. F{\"u}r 52,2 \% der Patienten lag die Serumkonzentration in dem f{\"u}r Erwachsene definierten therapeutischen Referenzbereich (30-80 ng/ml). Zwischen der Tagesdosis und der Serumkonzentration ergab sich eine auf dem 1 \%-Niveau signifikante positive Korrelation (rs= 0,655; p= 0,001). Hinsichtlich des Therapieeffektes respondierten 52,2 \% der Patienten seit Behandlungsbeginn. Zwischen der Serumkonzentration und dem therapeutischen Effekt ergab sich ein auf dem 5 \%-Niveau signifikanter positiver Zusammenhang (rs= 0,534; p= 0,015). Zwischen der Serumkonzentration und den Nebenwirkungen konnte kein signifikanter Zusammenhang gefunden werden (r= 0,240; p= 0,282). Die Nebenwirkungsrate lag bei 30,4 \%, wobei Schl{\"a}frigkeit und Sedierung am h{\"a}ufigsten berichtet wurden. Als vorl{\"a}ufiger therapeutischer Referenzbereich f{\"u}r Mirtazapin f{\"u}r Kinder und Jugendliche mit Depression wird eine untere Grenze zwischen 15 ng/ml bis 20 ng/ml und eine obere Grenze von 50 ng/ml vorgeschlagen. Dieser Bereich liegt niedriger als der f{\"u}r erwachsene Patienten definierte Bereich f{\"u}r Mirtazapin von 30 bis 80 ng/ml. Die Limitationen der vorliegenden naturalistischen Studie beachtend, sollten die Ergebnisse mit Vorsicht interpretiert und anhand einer gr{\"o}ßeren Stichprobe unter kontrollierteren Bedingungen {\"u}berpr{\"u}ft werden.}, subject = {Arzneimittel{\"u}berwachung}, language = {de} } @phdthesis{Choi2024, author = {Choi, Jihyoung}, title = {Development of an Add-On Electrode for Non-Invasive Monitoring in Bioreactor Cultures and Medical Devices}, doi = {10.25972/OPUS-35823}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-358232}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Electrochemical impedance spectroscopy (EIS) is a valuable technique analyzing electrochemical behavior of biological systems such as electrical characterization of cells and biomolecules, drug screening, and biomaterials in biomedical field. In EIS, an alternating current (AC) power signal is applied to the biological system, and the impedance of the system is measured over a range of frequencies. In vitro culture models of endothelial or epithelial barrier tissue can be achieved by culturing barrier tissue on scaffolds made with synthetic or biological materials that provide separate compartments (apical and basal sides), allowing for further studies on drug transport. EIS is a great candidate for non-invasive and real-time monitoring of the electrical properties that correlate with barrier integrity during the tissue modeling. Although commercially available transendothelial/transepithelial electrical resistance (TEER) measurement devices are widely used, their use is particularly common in static transwell culture. EIS is considered more suitable than TEER measurement devices in bioreactor cultures that involve dynamic fluid flow to obtain accurate and reliable measurements. Furthermore, while TEER measurement devices can only assess resistance at a single frequency, EIS measurements can capture both resistance and capacitance properties of cells, providing additional information about the cellular barrier's characteristics across various frequencies. Incorporating EIS into a bioreactor system requires the careful optimization of electrode integration within the bioreactor setup and measurement parameters to ensure accurate EIS measurements. Since bioreactors vary in size and design depending on the purpose of the study, most studies have reported using an electrode system specifically designed for a particular bioreactor. The aim of this work was to produce multi-applicable electrodes and established methods for automated non-invasive and real-time monitoring using the EIS technique in bioreactor cultures. Key to the electrode material, titanium nitride (TiN) coating was fabricated on different substrates (materials and shape) using physical vapor deposition (PVD) and housed in a polydimethylsiloxane (PDMS) structure to allow the electrodes to function as independent units. Various electrode designs were evaluated for double-layer capacitance and morphology using EIS and scanning electron microscopy (SEM), respectively. The TiN-coated tube electrode was identified as the optimal choice. Furthermore, EIS measurements were performed to examine the impact of influential parameters related to culture conditions on the TiN-coated electrode system. In order to demonstrate the versatility of the electrodes, these electrodes were then integrated into in different types of perfusion bioreactors for monitoring barrier cells. Blood-brain barrier (BBB) cells were cultured in the newly developed dynamic flow bioreactor, while human umblical vascular endothelial cells (HUVECs) and Caco-2 cells were cultured in the miniature hollow fiber bioreactor (HFBR). As a result, the TiN-coated tube electrode system enabled investigation of BBB barrier integrity in long-term bioreactor culture. While EIS measurement could not detect HUVECs electrical properties in miniature HFBR culture, there was the possibility of measuring the barrier integrity of Caco-2 cells, indicating potential usefulness for evaluating their barrier function. Following the bioreactor cultures, the application of the TiN-coated tube electrode was expanded to hemofiltration, based on the hypothesis that the EIS system may be used to monitor clotting or clogging phenomena in hemofiltration. The findings suggest that the EIS monitoring system can track changes in ion concentration of blood before and after hemofiltration in real-time, which may serve as an indicator of clogging of filter membranes. Overall, our research demonstrates the potential of TiN-coated tube electrodes for sensitive and versatile non-invasive monitoring in bioreactor cultures and medical devices.}, subject = {Monitoring}, language = {en} } @phdthesis{Kutschka2024, author = {Kutschka, Ilona}, title = {Activation of the integrated stress response induces remodeling of cardiac metabolism in Barth Syndrome}, doi = {10.25972/OPUS-35818}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-358186}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Barth Syndrome (BTHS) is an inherited X-chromosomal linked disorder, characterized by early development of cardiomyopathy, immune system defects, skeletal muscle myopathy and growth retardation. The disease displays a wide variety of symptoms including heart failure, exercise intolerance and fatigue due to the muscle weakness. The cause of the disease are mutations in the gene encoding for the mitochondrial transacylase Tafazzin (TAZ), which is important for remodeling of the phospholipid cardiolipin (CL). All mutations result in a pronounced decrease of the functional enzyme leading to an increase of monolysocardiolipin (MLCL), the precursor of mature CL, and a decrease in mature CL itself. CL is a hallmark phospholipid of mitochondrial membranes, highly enriched in the inner mitochondrial membrane (IMM). It is not only important for the formation of the cristae structures, but also for the function of different protein complexes associated with the mitochondrial membrane. Reduced levels of mature CL cause remodeling of the respiratory chain supercomplexes, impaired respiration, defects in the Krebs cycle and a loss of mitochondrial calcium uniporter (MCU) protein. The defective Ca2+ handling causes impaired redox homeostasis and energy metabolism resulting in cellular arrhythmias and defective electrical conduction. In an uncompensated situation, blunting mitochondrial Ca2+ uptake provokes increased mitochondrial emission of H2O2 during workload transitions, related to oxidation of NADPH, which is required to regenerate anti-oxidative enzymes. However, in the hearts and cardiac myocytes of mice with a global knock-down of the Taz gene (Taz-KD), no increase in mitochondrial ROS was observed, suggesting that other metabolic pathways may have compensated for reduced Krebs cycle activation. The healthy heart produces most of its energy by consuming fatty acids. In this study, the fatty acid uptake into mitochondria and their further degradation was investigated, which showed a switch of the metabolism in general in the Taz-KD mouse model. In vivo studies revealed an increase of glucose uptake into the heart and decreased fatty acid uptake and oxidation. Disturbed energy conversion resulted in activation of retrograde signaling pathways, implicating overall changes in the cell metabolism. Upregulated integrated stress response (ISR) was confirmed by increased levels of the downstream target, i.e., the activating transcription factor 4 (ATF4). A Tafazzin knockout mouse embryonal fibroblast cell model (TazKO) was used to inhibit the ISR using siRNA transfection or pharmaceutical inhibition. This verified the central role of II the ISR in regulating the metabolism in BTHS. Moreover, an increased metabolic flux into glutathione biosynthesis was observed, which supports redox homeostasis. In vivo PET-CT scans depicted elevated activity of the xCT system in the BTHS mouse heart, which transports essential amino acids for the biosynthesis of glutathione precursors. Furthermore, the stress induced signaling pathway also affected the glutamate metabolism, which fuels into the Krebs cycle via -ketoglutarate and therefore supports energy converting pathways. In summary, this thesis provides novel insights into the energy metabolism and redox homeostasis in Barth syndrome cardiomyopathy and its regulation by the integrated stress response, which plays a central role in the metabolic alterations. The aim of the thesis was to improve the understanding of these metabolic changes and to identify novel targets, which can provide new possibilities for therapeutic intervention in Barth syndrome.}, subject = {Herzmuskelkrankheit}, language = {en} } @phdthesis{Wilhelmi2024, author = {Wilhelmi, Kai Alexander}, title = {Untersuchung von Ver{\"a}nderungen der myelinisierten Nervenfasern durch Entmarkung in Haut- und Nervenbiopsien von Patienten mit Polyneuropathie}, doi = {10.25972/OPUS-36004}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-360046}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {In dieser Arbeit wurde durch das immunhistochemische Anf{\"a}rben von nodalen (Natriumkan{\"a}le, NF), paranodalen (Caspr, NF) und internodalen (MBP) Proteinen der in Fingerhautbiopsien vorhanden Nervenfasern untersucht, ob eine Ver{\"a}nderung der typischen Verteilungsmuster dieser Proteine, eine demyelinisierende Polyneuropathie anzeigen kann. Dazu wurden am Universit{\"a}tsklinikum W{\"u}rzburg prospektiv 93 Polyneuropathie-Patienten und 25 Kontrollpersonen rekrutiert. Bei allen Patienten wurden Hautstanzbiospien am Zeigefinger durchgef{\"u}hrt. Bei 35 Patienten mit schweren oder unklaren Verl{\"a}ufen, wurden konsiliarisch Nervus suralis Biopsien durchgef{\"u}hrt. Aus einem Abschnitt von 27 dieser Biopsien, konnten im Rahmen dieser Arbeit Zupfnervenpr{\"a}parate angefertigt und analog zu den Hautbiopsien ausgewertet werden. Aus der Routinediagnostik der Klinik flossen weiterhin die Ergebnisse der elektrophysiologischen Routinediagnostik und der Histologiebefund der Nervus suralis Biopsien in die Auswertung ein. Zusammenfassend kamen ver{\"a}nderte Natriumkanalbanden in Fingerhautbiopsien signifikant h{\"a}ufiger bei Patienten mit elektrophysiologisch als demyelinisierend befundeten Polyneuropathien, als bei Patienten mit elektrophysiologisch als axonal befundeten Polyneuropathien vor. Vielfach fanden sich ver{\"a}nderte Natriumkanalbanden inmitten para- und internodal unauff{\"a}lliger Schn{\"u}rringe und umgekehrt. Diese Beobachtung st{\"u}tzt die bereits in Vorarbeiten vorgeschlagene und in der aktuellen Leitlinie zur Diagnostik f{\"u}r Polyneuropathien aufgegriffene Entit{\"a}t der Paranodopathien (Uncini, Susuki, \& Yuki, 2013). M{\"o}glich w{\"a}re, dass eine ver{\"a}nderte Verteilung der Natriumkan{\"a}le die schnelle Leitf{\"a}higkeit beeintr{\"a}chtigen und somit trotz intakter Bemarkung, elektrophysiologisch das Bild einer demyelinisierenden Neuropathie vermittelt. Ein direkter Zusammenhang zwischen dem Auftreten von doppelten und verl{\"a}ngerten Natriumkanalbanden und einzelnen Messwerten (z.B. Amplituden und Latenzzeiten) fand sich nicht. Auch in den Zupfnervenpr{\"a}paraten der Nervus suralis Biopsien, konnten o.g. Verteilungsmuster untersucht werden. Deren Vorkommen zeigte sich als unabh{\"a}ngig vom elektrophysiologischen und histologischen Befund, von der {\"A}tiologie der PNP und von den gefundenen Ver{\"a}nderungen in den Hautbiopsien des betreffenden Patienten.}, subject = {Polyneuropathie}, language = {de} } @phdthesis{StratmanngebHirster2024, author = {Stratmann [geb. Hirster], Tizia}, title = {Ver{\"a}nderung der gesundheitsbezogenen Lebensqualit{\"a}t nach leberchirurgischen Operationen}, doi = {10.25972/OPUS-35997}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-359977}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Es zeigte sich, dass die unmittelbare postoperative gesundheitsbezogene Lebensqualit{\"a}t erwartungsgem{\"a}ß deutlich eingeschr{\"a}nkt, jedoch nach circa sechs Monaten wieder auf dem Ausgangsniveau der pr{\"a}operativen Ebene angekommen war. Sowohl die Symptomskalen als auch die Funktionsskalen zeigten statistisch signifikante Unterschiede der erhobenen Werte bez{\"u}glich des Vergleichs der pr{\"a}operativen zu den postoperativen Daten, dasselbe ließ sich {\"u}ber die Werte im Rahmen der Verlaufskontrolle nach circa sechs Monaten erheben. Eine kurzfristige Einbuße der Lebensqualit{\"a}t durch einen station{\"a}ren Krankenhausaufenthalt sowie einer operativen Versorgung erscheint logisch. F{\"u}r die zuk{\"u}nftige Entscheidung vor allem auch f{\"u}r Personen, welche aufgrund einer benignen Leberraumforderung eine operative Versorgung erhalten sollen, ist zu sagen, dass die globale gesundheitsbezogene Lebensqualit{\"a}t postoperativ nach circa sechs Monaten gleich bzw. etwas gebessert ausfiel und somit eine Rechtfertigung der operativen Versorgung auch bei benignen Erkrankungen darstellen kann. Ein wesentlicher Aspekt der Arbeit ist, dass gezeigt werden konnte, dass auch bei komplexen Lebereingriffen eine schnelle Rekonvaleszenz - mindestens auf das Niveau vor dem Eingriff - innerhalb der ersten sechs Monate zu erwarten ist. Die systematische Erfassung der Lebensqualit{\"a}t hilft die postoperativen Einschr{\"a}nkungen und die Rekonvaleszenz zu normieren.}, subject = {Leberresektion}, language = {de} } @article{GerlichAndreicaKueffneretal.2020, author = {Gerlich, C. and Andreica, I. and K{\"u}ffner, R. and Krause, D. and Lakomek, H. J. and Reusch, A. and Braun, J.}, title = {Evaluation einer Basisschulung f{\"u}r Patienten mit rheumatoider Arthritis}, series = {Zeitschrift f{\"u}r Rheumatologie}, volume = {79}, journal = {Zeitschrift f{\"u}r Rheumatologie}, doi = {10.1007/s00393-020-00769-4}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-280359}, pages = {737-748}, year = {2020}, abstract = {Hintergrund Ein neues Rahmenkonzept hat die flexible Ableitung und Nutzung von rheumatologischen Schulungsprogrammen f{\"u}r unterschiedliche Versorgungsbereiche erm{\"o}glicht. Auf dieser Grundlage wurde eine 5‑st{\"u}ndige Basisschulung f{\"u}r Patienten mit rheumatoider Arthritis (RA) entwickelt, es wurden rheumatologische Fach{\"a}rzte und Psychologen trainiert, und dann wurde die Wirksamkeit nach dem Wirkmodell der Patientenschulung evaluiert. Methoden Mit dem Studiendesign einer extern randomisierten Wartekontrollgruppenstudie mit 3 Messzeitpunkten wurde gepr{\"u}ft, wie sich die 5‑st{\"u}ndige Basisschulung auf das Erkrankungs- und Behandlungswissen sowie auf die Gesundheitskompetenz von RA-Patienten (n = 249) auswirkt. Weitere Fragen betrafen Einstellungsparameter, Kommunikationskompetenz, Erkrankungsauswirkungen und die Zufriedenheit mit der Schulung. Die Auswertungen erfolgten auf Intention-to-treat-Basis mit Kovarianzanalysen f{\"u}r die Hauptzielgr{\"o}ßen unter Ber{\"u}cksichtigung des Ausgangswertes. Ergebnisse Die Analysen zeigen, dass die Basisschulung RA wirksam ist. Noch 3 Monate nach der Schulung verf{\"u}gten die Schulungsteilnehmer {\"u}ber mehr Wissen und Gesundheitskompetenz als die Wartekontrollgruppe mit kleinem bis mittelgroßem Effekt (d = 0,37 bzw. 0,38). In den Nebenzielgr{\"o}ßen zeigten sich mit Ausnahme der Krankheitskommunikation keine weiteren Schulungseffekte. Diskussion Die Basisschulung bietet eine gute Grundlage, auf der weitere Interventionen zur Verbesserung von Einstellungs- und Erkrankungsparametern aufbauen k{\"o}nnen. Sie eignet sich damit als zentraler Baustein f{\"u}r die rheumatologische Versorgung auf verschiedenen Ebenen.}, language = {de} } @phdthesis{Zink2024, author = {Zink, Johannes}, title = {Algorithms for Drawing Graphs and Polylines with Straight-Line Segments}, doi = {10.25972/OPUS-35475}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-354756}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Graphs provide a key means to model relationships between entities. They consist of vertices representing the entities, and edges representing relationships between pairs of entities. To make people conceive the structure of a graph, it is almost inevitable to visualize the graph. We call such a visualization a graph drawing. Moreover, we have a straight-line graph drawing if each vertex is represented as a point (or a small geometric object, e.g., a rectangle) and each edge is represented as a line segment between its two vertices. A polyline is a very simple straight-line graph drawing, where the vertices form a sequence according to which the vertices are connected by edges. An example of a polyline in practice is a GPS trajectory. The underlying road network, in turn, can be modeled as a graph. This book addresses problems that arise when working with straight-line graph drawings and polylines. In particular, we study algorithms for recognizing certain graphs representable with line segments, for generating straight-line graph drawings, and for abstracting polylines. In the first part, we first examine, how and in which time we can decide whether a given graph is a stick graph, that is, whether its vertices can be represented as vertical and horizontal line segments on a diagonal line, which intersect if and only if there is an edge between them. We then consider the visual complexity of graphs. Specifically, we investigate, for certain classes of graphs, how many line segments are necessary for any straight-line graph drawing, and whether three (or more) different slopes of the line segments are sufficient to draw all edges. Last, we study the question, how to assign (ordered) colors to the vertices of a graph with both directed and undirected edges such that no neighboring vertices get the same color and colors are ascending along directed edges. Here, the special property of the considered graph is that the vertices can be represented as intervals that overlap if and only if there is an edge between them. The latter problem is motivated by an application in automated drawing of cable plans with vertical and horizontal line segments, which we cover in the second part. We describe an algorithm that gets the abstract description of a cable plan as input, and generates a drawing that takes into account the special properties of these cable plans, like plugs and groups of wires. We then experimentally evaluate the quality of the resulting drawings. In the third part, we study the problem of abstracting (or simplifying) a single polyline and a bundle of polylines. In this problem, the objective is to remove as many vertices as possible from the given polyline(s) while keeping each resulting polyline sufficiently similar to its original course (according to a given similarity measure).}, subject = {Graphenzeichnen}, language = {en} } @phdthesis{HuttererneeHerzog2024, author = {Hutterer, n{\´e}e Herzog, Katharina}, title = {Treatment-like use of discrimination training to reduce generalization of conditioned fear}, doi = {10.25972/OPUS-31728}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-317286}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Anxiety patients overgeneralize fear, also because of an inability to perceptually discriminate threat and safety signals. Therefore, some studies have developed discrimination training that successfully reduced the occurrence of fear generalization. The present work is the first to take a treatment-like approach by using discrimination training after generalization has occurred. Therefore, two studies were conducted with healthy participants using the same fear conditioning and generalization paradigm, with two faces as conditioned stimuli (CSs), and four facial morphs between CSs as generalization stimuli (GSs). Only one face (CS+) was followed by a loud scream (unconditioned stimulus, US). In Study 1, participants underwent either fear-relevant (discriminating faces) or fear-irrelevant discrimination training (discriminating width of lines) or a non-discriminative control training between the two generalization tests, each with or without feedback (n = 20 each). Generalization of US expectancy was reduced more effectively by fear-relevant compared to fear-irrelevant discrimination training. However, neither discrimination training was more effective than non-discriminative control training. Moreover, feedback reduced generalization of US expectancy only in discrimination training. Study 2 was designed to replicate the effects of the discrimination-training conditions in a large sample (N = 244) and examine their benefits in individuals at risk for anxiety disorders. Again, feedback reduced fear generalization particularly well for US expectancy. Fear relevance was not confirmed to be particularly fear-reducing in healthy participants, but may enhance training effects in individuals at risk of anxiety disorder. In summary, this work provides evidence that existing fear generalization can be reduced by discrimination training, likely involving several (higher-level) processes besides perceptual discrimination (e.g., motivational mechanisms in feedback conditions). Its use may be promising as part of individualized therapy for patients with difficulty discriminating similar stimuli.}, subject = {Furcht}, language = {en} } @phdthesis{WeigelverhHoffmann2024, author = {Weigel [verh. Hoffmann], Mathis Leonard}, title = {Thrombozytenfunktionsanalyse als potenzielles Instrument zur Fr{\"u}herkennung von Sepsis}, doi = {10.25972/OPUS-35819}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-358193}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Sepsis ist ein h{\"a}ufiges und akut lebensbedrohliches Syndrom, das eine Organfunktionsst{\"o}rung in Folge einer dysregulierten Immunantwort auf eine Infektion beschreibt. Eine fr{\"u}hzeitige Diagnosestellung und Therapieeinleitung sind von zentraler Bedeutung f{\"u}r das {\"U}berleben der Patient:innen. In einer Pilotstudie konnte unsere Forschungsgruppe mittels Durchflusszytometrie eine ausgepr{\"a}gte Hyporeaktivit{\"a}t der Thrombozyten bei Sepsis nachweisen, die einen potenziell neuen Biomarker zur Sepsis-Fr{\"u}herkennung darstellt. Zur Evaluation des Ausmaßes und Entstehungszeitpunktes der detektierten Thrombozytenfunktionsst{\"o}rung wurden im Rahmen der vorliegenden Arbeit zus{\"a}tzlich zu Patient:innen mit Sepsis (SOFA-Score ≥ 2; n=13) auch hospitalisierte Patient:innen mit einer Infektion ohne Sepsis (SOFA-Score < 2; n=12) rekrutiert. Beide Kohorten wurden zu zwei Zeitpunkten (t1: <24h; t2: Tag 5-7) im Krankheitsverlauf mittels Durchflusszytometrie und PFA-200 untersucht und mit einer gesunden Kontrollgruppe (n=28) verglichen. Ph{\"a}notypische Auff{\"a}lligkeiten der Thrombozyten bei Sepsis umfassten: (i) eine ver{\"a}nderte Expression verschiedener Untereinheiten des GPIb-IX-V-Rezeptorkomplexes, die auf ein verst{\"a}rktes Rezeptor-Shedding hindeutet; (ii) ein ausgepr{\"a}gtes Mepacrin-Beladungsdefizit, das auf eine zunehmend reduzierte Anzahl von δ-Granula entlang des Infektion-Sepsis Kontinuums hinweist; (iii) eine Reduktion endst{\"a}ndig gebundener Sialins{\"a}ure im Sinne einer verst{\"a}rkten Desialylierung. Die funktionelle Analyse der Thrombozyten bei Sepsis ergab bei durchflusszytometrischer Messung der Integrin αIIbβ3-Aktivierung (PAC-1-Bindung) eine ausgepr{\"a}gte generalisierte Hyporeaktivit{\"a}t gegen{\"u}ber multiplen Agonisten, die abgeschw{\"a}cht bereits bei Infektion nachweisbar war und gem{\"a}ß ROC-Analysen gut zwischen Infektion und Sepsis diskriminierte (AUC >0.80 f{\"u}r alle Agonisten). Im Gegensatz dazu zeigten Thrombozyten bei Sepsis und Analyse mittels PFA-200 unter Einfluss physiologischer Scherkr{\"a}fte eine normale bis gar beschleunigte Aggregation. Die Reaktivit{\"a}tsmessung von Thrombozyten mittels Durchflusszytometrie stellt weiterhin einen vielversprechenden Biomarker f{\"u}r die Sepsis-Fr{\"u}herkennung dar. F{\"u}r weitere Schlussfolgerungen ist jedoch eine gr{\"o}ßere Kohorte erforderlich. In nachfolgenden Untersuchungen sollten zudem mechanistische Ursachen der beschriebenen ph{\"a}notypischen und funktionellen Auff{\"a}lligkeiten von Thrombozyten bei Infektion und Sepsis z.B. mittels Koinkubationsexperimenten untersucht werden.}, subject = {Sepsis}, language = {de} } @article{HauerPoppTaheretal.2019, author = {Hauer, Nadine N. and Popp, Bernt and Taher, Leila and Vogl, Carina and Dhandapany, Perundurai S. and B{\"u}ttner, Christian and Uebe, Steffen and Sticht, Heinrich and Ferrazzi, Fulvia and Ekici, Arif B. and De Luca, Alessandro and Klinger, Patrizia and Kraus, Cornelia and Zweier, Christiane and Wiesener, Antje and Abou Jamra, Rami and Kunstmann, Erdmute and Rauch, Anita and Wieczorek, Dagmar and Jung, Anna-Marie and Rohrer, Tilman R. and Zenker, Martin and Doerr, Helmuth-Guenther and Reis, Andr{\´e} and Thiel, Christian T.}, title = {Evolutionary conserved networks of human height identify multiple Mendelian causes of short stature}, series = {European Journal of Human Genetics}, volume = {27}, journal = {European Journal of Human Genetics}, doi = {10.1038/s41431-019-0362-0}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-227899}, pages = {1061-1071}, year = {2019}, abstract = {Height is a heritable and highly heterogeneous trait. Short stature affects 3\% of the population and in most cases is genetic in origin. After excluding known causes, 67\% of affected individuals remain without diagnosis. To identify novel candidate genes for short stature, we performed exome sequencing in 254 unrelated families with short stature of unknown cause and identified variants in 63 candidate genes in 92 (36\%) independent families. Based on systematic characterization of variants and functional analysis including expression in chondrocytes, we classified 13 genes as strong candidates. Whereas variants in at least two families were detected for all 13 candidates, two genes had variants in 6 (UBR4) and 8 (LAMA5) families, respectively. To facilitate their characterization, we established a clustered network of 1025 known growth and short stature genes, which yielded 29 significantly enriched clusters, including skeletal system development, appendage development, metabolic processes, and ciliopathy. Eleven of the candidate genes mapped to 21 of these clusters, including CPZ, EDEM3, FBRS, IFT81, KCND1, PLXNA3, RASA3, SLC7A8, UBR4, USP45, and ZFHX3. Fifty additional growth-related candidates we identified await confirmation in other affected families. Our study identifies Mendelian forms of growth retardation as an important component of idiopathic short stature.}, language = {en} } @article{HeWuD'Avinoetal.2018, author = {He, Tao and Wu, Yanfei and D'Avino, Gabriele and Schmidt, Elliot and Stolte, Matthias and Cornil, J{\´e}r{\^o}me and Beljonne, David and Ruden, P. Paul and W{\"u}rthner, Frank and Frisbie, C. Daniel}, title = {Crystal step edges can trap electrons on the surfaces of n-type organic semiconductors}, series = {Nature Communications}, volume = {9}, journal = {Nature Communications}, doi = {10.1038/s41467-018-04479-z}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-227957}, year = {2018}, abstract = {Understanding relationships between microstructure and electrical transport is an important goal for the materials science of organic semiconductors. Combining high-resolution surface potential mapping by scanning Kelvin probe microscopy (SKPM) with systematic field effect transport measurements, we show that step edges can trap electrons on the surfaces of single crystal organic semiconductors. n-type organic semiconductor crystals exhibiting positive step edge surface potentials display threshold voltages that increase and carrier mobilities that decrease with increasing step density, characteristic of trapping, whereas crystals that do not have positive step edge surface potentials do not have strongly step density dependent transport. A device model and microelectrostatics calculations suggest that trapping can be intrinsic to step edges for crystals of molecules with polar substituents. The results provide a unique example of a specific microstructure-charge trapping relationship and highlight the utility of surface potential imaging in combination with transport measurements as a productive strategy for uncovering microscopic structure-property relationships in organic semiconductors.}, language = {en} } @article{HeDiSanteLietal.2018, author = {He, Jiangang and Di Sante, Domenico and Li, Ronghan and Chen, Xing-Qiu and Rondinelli, James M. and Franchini, Cesare}, title = {Tunable metal-insulator transition, Rashba effect and Weyl Fermions in a relativistic charge-ordered ferroelectric oxide}, series = {Nature Communications}, volume = {9}, journal = {Nature Communications}, doi = {10.1038/s41467-017-02814-4}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-227946}, year = {2018}, abstract = {Controllable metal-insulator transitions (MIT), Rashba-Dresselhaus (RD) spin splitting, and Weyl semimetals are promising schemes for realizing processing devices. Complex oxides are a desirable materials platform for such devices, as they host delicate and tunable charge, spin, orbital, and lattice degrees of freedoms. Here, using first-principles calculations and symmetry analysis, we identify an electric-field tunable MIT, RD effect, and Weyl semimetal in a known, charge-ordered, and polar relativistic oxide Ag2BiO3 at room temperature. Remarkably, a centrosymmetric BiO6 octahedral-breathing distortion induces a sizable spontaneous ferroelectric polarization through Bi3+/Bi5+ charge disproportionation, which stabilizes simultaneously the insulating phase. The continuous attenuation of the Bi3+/Bi5+ disproportionation obtained by applying an external electric field reduces the band gap and RD spin splitting and drives the phase transition from a ferroelectric RD insulator to a paraelectric Dirac semimetal, through a topological Weyl semimetal intermediate state. These findings suggest that Ag2BiO3 is a promising material for spin-orbitonic applications.}, language = {en} } @article{GilderWackKaubetal.2018, author = {Gilder, Stuart A. and Wack, Michael and Kaub, Leon and Roud, Sophie C. and Petersen, Nikolai and Heinsen, Helmut and Hillenbrand, Peter and Milz, Stefan and Schmitz, Chistoph}, title = {Distribution of magnetic remanence carriers in the human brain}, series = {Scientific Reports}, volume = {8}, journal = {Scientific Reports}, doi = {10.1038/s41598-018-29766-z}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-233035}, year = {2018}, abstract = {That the human brain contains magnetite is well established; however, its spatial distribution in the brain has remained unknown. We present room temperature, remanent magnetization measurements on 822 specimens from seven dissected whole human brains in order to systematically map concentrations of magnetic remanence carriers. Median saturation remanent magnetizations from the cerebellum were approximately twice as high as those from the cerebral cortex in all seven cases (statistically significantly distinct, p = 0.016). Brain stems were over two times higher in magnetization on average than the cerebral cortex. The ventral (lowermost) horizontal layer of the cerebral cortex was consistently more magnetic than the average cerebral cortex in each of the seven studied cases. Although exceptions existed, the reproducible magnetization patterns lead us to conclude that magnetite is preferentially partitioned in the human brain, specifically in the cerebellum and brain stem.}, language = {en} } @article{GotruvanGeffenNagyetal.2019, author = {Gotru, Sanjeev Kiran and van Geffen, Johanna P. and Nagy, Magdolna and Mammadova-Bach, Elmina and Eilenberger, Julia and Volz, Julia and Manukjan, Georgi and Schulze, Harald and Wagner, Leonard and Eber, Stefan and Schambeck, Christian and Deppermann, Carsten and Brouns, Sanne and Nurden, Paquita and Greinacher, Andreas and Sachs, Ulrich and Nieswandt, Bernhard and Hermanns, Heike M. and Heemskerk, Johan W. M. and Braun, Attila}, title = {Defective Zn2+ homeostasis in mouse and human platelets with α- and δ-storage pool diseases}, series = {Scientific Reports}, volume = {9}, journal = {Scientific Reports}, doi = {10.1038/s41598-019-44751-w}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-227455}, year = {2019}, abstract = {Zinc (Zn2+) can modulate platelet and coagulation activation pathways, including fibrin formation. Here, we studied the (patho)physiological consequences of abnormal platelet Zn2+ storage and release. To visualize Zn2+ storage in human and mouse platelets, the Zn2+ specific fluorescent dye FluoZin3 was used. In resting platelets, the dye transiently accumulated into distinct cytosolic puncta, which were lost upon platelet activation. Platelets isolated from Unc13d-/- mice, characterized by combined defects of α/δ granular release, showed a markedly impaired Zn2+ release upon activation. Platelets from Nbeal2-/- mice mimicking Gray platelet syndrome (GPS), characterized by primarily loss of the α-granule content, had strongly reduced Zn2+ levels, which was also confirmed in primary megakaryocytes. In human platelets isolated from patients with GPS, Hermansky-Pudlak Syndrome (HPS) and Storage Pool Disease (SPD) altered Zn2+ homeostasis was detected. In turbidity and flow based assays, platelet-dependent fibrin formation was impaired in both Nbeal2-/- and Unc13d-/- mice, and the impairment could be partially restored by extracellular Zn2+. Altogether, we conclude that the release of ionic Zn2+ store from secretory granules upon platelet activation contributes to the procoagulant role of Zn2+ in platelet-dependent fibrin formation.}, language = {en} } @article{GoreLocatelliZugmaieretal.2018, author = {Gore, Lia and Locatelli, Franco and Zugmaier, Gerhard and Handgretinger, Rupert and O'Brien, Maureen M. and Bader, Peter and Bhojwani, Deepa and Schlegel, Paul-Gerhardt and Tuglus, Catherine A. and Stackelberg, Arend von}, title = {Survival after blinatumomab treatment in pediatric patients with relapsed/refractory B-cell precursor acute lymphoblastic leukemia}, series = {Blood Cancer Journal}, volume = {8}, journal = {Blood Cancer Journal}, doi = {10.1038/s41408-018-0117-0}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-230726}, year = {2018}, abstract = {no abstract available}, language = {en} } @article{FranchiniJonesXiongetal.2018, author = {Franchini, Paolo and Jones, Julia C. and Xiong, Peiwen and Kneitz, Susanne and Gompert, Zachariah and Warren, Wesley C. and Walter, Ronald B. and Meyer, Axel and Schartl, Manfred}, title = {Long-term experimental hybridisation results in the evolution of a new sex chromosome in swordtail fish}, series = {Nature Communications}, volume = {9}, journal = {Nature Communications}, doi = {10.1038/s41467-018-07648-2}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-228396}, year = {2018}, abstract = {The remarkable diversity of sex determination mechanisms known in fish may be fuelled by exceptionally high rates of sex chromosome turnovers or transitions. However, the evolutionary causes and genomic mechanisms underlying this variation and instability are yet to be understood. Here we report on an over 30-year evolutionary experiment in which we tested the genomic consequences of hybridisation and selection between two Xiphophorus fish species with different sex chromosome systems. We find that introgression and imposing selection for pigmentation phenotypes results in the retention of an unexpectedly large maternally derived genomic region. During the hybridisation process, the sex-determining region of the X chromosome from one parental species was translocated to an autosome in the hybrids leading to the evolution of a new sex chromosome. Our results highlight the complexity of factors contributing to patterns observed in hybrid genomes, and we experimentally demonstrate that hybridisation can catalyze rapid evolution of a new sex chromosome.}, language = {en} } @phdthesis{Hegmann2024, author = {Hegmann, Reinhold}, title = {Pr{\"u}ferqualifikation und Pr{\"u}fungsqualit{\"a}t - Eine empirische Untersuchung privater pr{\"u}fungspflichtiger Unternehmen in Deutschland}, doi = {10.25972/OPUS-32254}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-322546}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Die Jahresabschlusspr{\"u}fung verfolgt das Ziel, die Verl{\"a}sslichkeit der Rechnungslegung zu best{\"a}tigen. Folglich kann sie einen wesentlichen Beitrag zu einem hohen Informationsniveau an den M{\"a}rkten leisten. Angesichts dieser großen {\"o}konomischen Bedeutung unternimmt der deutsche Gesetzgeber zahlreiche Anstrengungen, um eine hohe Pr{\"u}fungsqualit{\"a}t sicherzustellen. Die Sichtung der Wirtschaftspr{\"u}ferordnung zeigt hierbei, dass regulatorische Maßnahmen ergriffen werden, die am Kern der Jahresabschlusspr{\"u}fung ansetzen, n{\"a}mlich an den Berufsangeh{\"o}rigen selbst. So wurde der Zugang zum Berufsstand der vereidigten Buchpr{\"u}fer mehrmals geschlossen und wiederer{\"o}ffnet. Des Weiteren sind markante Anpassungen des Niveaus des Wirtschaftspr{\"u}fungsexamens im Zeitablauf zu erkennen. Bei der Jahresabschlusspr{\"u}fung der Unternehmen von {\"o}ffentlichem Interesse sind außerdem besondere Berufspflichten zu erf{\"u}llen. Zum einen ist diesen schweren Eingriffen in die Freiheit der Berufswahl und der Berufsaus{\"u}bung gemein, dass sie allesamt die Qualifikation des Abschlusspr{\"u}fers adressieren. Zum anderen werden die entsprechenden Gesetzes{\"a}nderungen mehrheitlich mit einer St{\"a}rkung der Pr{\"u}fungsqualit{\"a}t begr{\"u}ndet. Fraglich ist, inwiefern jene Facetten der Pr{\"u}ferqualifikation tats{\"a}chlich einen Einfluss auf die Pr{\"u}fungsqualit{\"a}t aus{\"u}ben. Aufgrund mangelnder Evidenz ergibt sich die Notwendigkeit, eine empirische Studie am deutschen Pr{\"u}fermarkt durchzuf{\"u}hren und somit den Beginn zur Schließung der identifizierten Forschungsl{\"u}cke zu setzen. Das Ziel der vorliegenden Dissertation besteht folglich darin, den Zusammenhang zwischen der Pr{\"u}ferqualifikation und der Pr{\"u}fungsqualit{\"a}t mittels Regressionsanalysen zu untersuchen. Dazu wurde ein einzigartiger Datensatz zu deutschen privaten pr{\"u}fungspflichtigen Kapitalgesellschaften mit unkonsolidierten Finanz- und Pr{\"u}ferinformationen im Zeitraum 2006-2018 mit insgesamt 217.585 grundlegenden Beobachtungen erhoben, bereinigt und aufbereitet. Da die Pr{\"u}fungsqualit{\"a}t nicht direkt beobachtbar ist, wird zwischen wahrgenommener Pr{\"u}fungsqualit{\"a}t und tats{\"a}chlicher Pr{\"u}fungsqualit{\"a}t unterschieden. Im Rahmen dieser Dissertation wird die wahrgenommene Pr{\"u}fungsqualit{\"a}t {\"u}ber Fremdkapitalkosten und die tats{\"a}chliche Pr{\"u}fungsqualit{\"a}t {\"u}ber absolute diskretion{\"a}re Periodenabgrenzungen approximiert. Die Ergebnisse der Hauptregressionen zeigen {\"u}berwiegend, dass kein Zusammenhang zwischen den Maßgr{\"o}ßen der Pr{\"u}ferqualifikation und der wahrgenommenen und tats{\"a}chlichen Pr{\"u}fungsqualit{\"a}t besteht. Die Zusatz- und Sensitivit{\"a}tsanalysen unterst{\"u}tzen diesen Befund. So k{\"o}nnen mit Blick auf die Berufszugangsregelungen keine Qualit{\"a}tsunterschiede zwischen den Berufsst{\"a}nden der Wirtschaftspr{\"u}fer und der vereidigten Buchpr{\"u}fer nachgewiesen werden. Auch innerhalb des Berufstandes der Wirtschaftspr{\"u}fer ergeben sich keine Hinweise auf ein Qualit{\"a}tsgef{\"a}lle zwischen den Pr{\"u}fergruppen, die unterschiedliche Examensanforderungen durchlebt haben. Hinsichtlich der Berufsaus{\"u}bungsregelungen ist zu beobachten, dass die zus{\"a}tzlichen Anforderungen an die Jahresabschlusspr{\"u}fung der Unternehmen von {\"o}ffentlichem Interesse nicht mit einer anderen Pr{\"u}fungsqualit{\"a}t bei privaten Unternehmen verbunden sind. Die beschriebenen regulatorischen Schritte des Gesetzgebers im Bereich der Pr{\"u}ferqualifikation erscheinen somit im Lichte einer verbesserten Pr{\"u}fungsqualit{\"a}t nicht zwingend gerechtfertigt.}, subject = {Pr{\"u}fungsqualit{\"a}t}, language = {de} } @phdthesis{Stuerzebecher2024, author = {St{\"u}rzebecher, Paulina Elena}, title = {Die Rolle von LASP1 in der Pathogenese der Atherosklerose im murinen Modell}, doi = {10.25972/OPUS-23935}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-239353}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Das regulatorische Ger{\"u}st-Protein LASP1, welches aus der Krebsforschung bekannt ist, wurde 2012 in humanen Makrophagen, den Protagonisten der Atherosklerose nachgewiesen. LASP1 ist durch seine Lokalisation an dynamischen Aktinskelettkonstruktionen (vgl. Invadopodien, Podosomen), nachweislich an Zellmigration, Proliferation und Invasionsf{\"a}higkeit bestimmter Tumorzellen beteiligt. Aufgrund einer großen Schnittmenge der Entstehungsmechanismen und zugrundeliegenden Signalwegen von Krebserkrankungen und Atherosklerose wurde LASP1 im Zusammenhang der Atherosklerose untersucht. In einem 16 Wochen Hochfettdi{\"a}tversuch zeigten LASP1.Ldlr-/--M{\"a}use mehr atherosklerotische L{\"a}sionen in der Gesamtaorta als Ldlr-/--Tiere, was eine athero-protektive Rolle von LASP1 nahelegt. Passend hierzu f{\"u}hrte Stimulation mit oxLDL in Makrophagen zu einer Hochregulation von LASP1. Zus{\"a}tzlich internalisierten LASP1-/--Makrophagen signifikant mehr oxLDL im Vergleich zu LASP1-exprimierenden Zellen. Analog zu den Daten aus der Krebsforschung konnte eine reduzierte endotheliale Adh{\"a}sion sowie chemotaktische Migration von Ldlr.LASP1-/--Monozyten im Vergleich zu Ldlr-/-- Monozyten festgestellt werden. Dies ließe isoliert betrachtet eine pro-atherogene Rolle von LASP1 vermuten. Ein Nachweis von LASP1 im Zellkern von BMDMs konnte, zus{\"a}tzlich zum fehlenden Shuttelproteinpartner ZO-2, nicht erbracht werden. Die Interaktion von LASP1 mit Transkriptionsfaktoren scheint daher unwahrscheinlich. Kongruent mit diesen Ergebnissen zeigte sich keine Ver{\"a}nderung der Transkription, der Proteinexpression sowie Sekretion von TNF! und ADAM17 durch den LASP1-KO. Insgesamt kommt LASP1 eine zweifellos komplexe Rolle in der Atherogenese zu. Die Ergebnisse der HFD-Versuche legen nahe, dass die prim{\"a}r anti-atherosklerotischen Einfl{\"u}sse von LASP1 in vivo gegen{\"u}ber den eher pro-atherosklerotischen Effekten des Proteins in vitro {\"u}berwiegen.}, subject = {Arteriosklerose}, language = {de} } @phdthesis{Mueller2024, author = {M{\"u}ller, Saskia}, title = {The Influence of Personality and Trust on Information Processing and Decision Making in the Specific Context of Online Marketing}, doi = {10.25972/OPUS-35952}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-359526}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Trust carries the capacity to shift the focus from risks to opportunities of a situation. Scientific studies from the field of trust research point out that besides situation-specific factors (i.e., stimuli of the environment), cross-situationally stable interindividual differences (i.e., personality) are involved in the emergence of trust. Stable interindividual differences are particularly influential to the subjective experience of situational conditions when crucial information is incomplete. The online shopping environment classifies as a prime example of markets with asymmetric information. Research has examined online consumer trust in the light of signaling theory to understand the effects of trust-enhancing signals. Previous research largely neglects interindividual differences in the perception, processing and reaction to these signals. Against this background, this scientific work has two primary objectives: the investigation of (1) interindividual differences in the evaluation of trust-enhancing signals and (2) a personality-based personalization of trust-enhancing signals in its effect on cognition and behavior. For this purpose, an interactive online shop setup was created, which served as realistic environmental framework. First, the results show a trust-enhancing effect of both objective and subjective personalization, with a superiority of subjective over objective personalization. Second, results suggest a particular susceptibility of the beliefs component of trust. Third, the results suggest that personalization exerts a specifically strong effect in what is, by definition, the particularly uncertain environment of credence goods. Fourth, results indicate that while the trust-enhancing effects of personalization operate (largely) independently of personality, the effect of personality on trust seems to depend on the condition of signal presentation. Taken together, the present work makes a contribution to understanding the effect of personality-adapted signaling environments on the emergence of trust and decision making in the specific context of B2C e-commerce.}, subject = {Pers{\"o}nlichkeit}, language = {en} } @phdthesis{Blickle2024, author = {Blickle, Marc Manuel}, title = {Das Zusammenspiel von Herz und Gehirn: Interozeptive Genauigkeit, Herzratenvariabilit{\"a}t und funktionelle Konnektivit{\"a}t kortikaler Netzwerke bei depressiven Patientinnen und Patienten}, doi = {10.25972/OPUS-31676}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-316762}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Hintergrund: Depressionen z{\"a}hlen zu den h{\"a}ufigsten psychischen Erkrankungen. Depressive Symptome umfassen beeintr{\"a}chtigte kognitive Funktionen, vegetative Beschwerden und ein ver{\"a}ndertes emotionales Erleben. Die defizit{\"a}re Wahrnehmung interner k{\"o}rperlicher Signale wird sowohl mit der Pathogenese der Depression als auch mit Angstst{\"o}rungen in Verbindung gebracht. Interozeptive Genauigkeit (IAc) beschreibt dabei die F{\"a}higkeit, k{\"o}rperliche Empfindungen wie den eigenen Herzschlag akkurat wahrzunehmen und wird mit einer Herzwahrnehmungsaufgabe erfasst. In bildgebenden Verfahren wie der funktionellen Magnetresonanztomografie (fMRT) war eine niedrigere IAc mit einer verringerten Inselaktivit{\"a}t assoziiert. W{\"a}hrend der Ruhezustandsmessung des Gehirns (resting-state fMRT) kann in Abwesenheit einer Aufgabe die intrinsische Aktivit{\"a}t des Gehirns gemessen werden. Dies erm{\"o}glicht die Identifizierung von kortikalen Netzwerken. Depressive Patienten weisen eine ver{\"a}nderte funktionelle Konnektivit{\"a}t innerhalb und zwischen einzelnen Netzwerken wie dem Salience Network (SN), welchem die Insel zugerechnet wird, und dem Default Mode Network (DMN) auf. Bisherige Studien, in denen {\"u}berwiegend j{\"u}ngere depressive Patienten untersucht wurden, kamen jedoch hinsichtlich der IAc und den kortikalen Netzwerken zu inkonsistenten Ergebnissen. Insbesondere ist unklar, inwieweit sich die IAc nach einem Therapieansprechen ver{\"a}ndert, von der Herzratenvariabilit{\"a}t (HRV) moduliert wird und welche Auswirkungen dies auf die funktionelle Konnektivit{\"a}t kortikaler Netzwerke hat. Ziele: Eine ver{\"a}nderte IAc und HRV wie auch funktionelle Konnektivit{\"a}tsunterschiede im DMN und SN k{\"o}nnten Biomarker der Depression darstellen. Im Rahmen einer L{\"a}ngsschnittuntersuchung wurde getestet, ob {\"a}ltere depressive Patienten {\"u}ber eine verringerte IAc, eine geringere HRV und {\"u}ber eine ver{\"a}nderte funktionelle Konnektivit{\"a}t im SN sowie DMN verf{\"u}gen. Dar{\"u}ber hinaus sollte erforscht werden, in welchem Ausmaß sich Patienten, die auf die Behandlung ansprachen (Responder), von sogenannten Non-Respondern in Bezug auf die IAc, die HRV, das SN und das DMN unterschieden. Methoden: In Studie 1 (Baseline) wurden 30 gr{\"o}ßtenteils medizierte, schwer depressive Patienten (> 50 Jahre) und 30 gesunde Kontrollprobanden untersucht. Die IAc wurde in einer Herzwahrnehmungsaufgabe ermittelt und die HRV bestimmt. Zus{\"a}tzlich wurde eine resting-state fMRT durchgef{\"u}hrt. Eine funktionelle Konnektivit{\"a}tsanalyse f{\"u}r Saatregionen im SN und DMN wurde mit einem saatbasierten Ansatz (seed-to-voxel) durchgef{\"u}hrt. F{\"u}r eine Subgruppenanalyse wurde die Patientengruppe in {\"a}ngstlich-depressive und nicht-{\"a}ngstlich depressive Patienten unterteilt. In Studie 2 (sechs Monate Follow-up) wurde die Studienkohorte nochmals untersucht. Es nahmen 21 Personen der Patientengruppe und 28 Probanden der Kontrollgruppe teil. Wiederum wurden die IAc und die HRV bestimmt. Außerdem fand eine resting-state fMRT-Messung statt. Die Patientengruppe wurde unterteilt in depressive Responder und Non-Responder. Ergebnisse: In Studie 1 zeigten depressive Patienten eine funktionelle Hypokonnektivit{\"a}t zwischen einzelnen Saatregionen der Insel (SN) und Teilen des superioren frontalen Gyrus, des supplement{\"a}rmotorischen Cortex, des lateralen okzipitalen Cortex sowie des Okzipitalpols. Zudem wiesen depressive Patienten zwischen der Saatregion im anterioren Teil des DMN und der Insel sowie dem Operculum eine erh{\"o}hte funktionelle Konnektivit{\"a}t auf. Die Gruppen unterschieden sich nicht in der IAc und der HRV. {\"A}ngstlich-depressive Patienten zeigten eine h{\"o}here funktionelle Konnektivit{\"a}t innerhalb der Insel als nicht-{\"a}ngstlich depressive Patienten, jedoch zeigten sich keine Unterschiede in der IAc und der HRV. In Studie 2 wiesen depressive Non-Responder im Vergleich zu Respondern eine Hyperkonnektivit{\"a}t zwischen dem posterioren DMN und dem Frontalpol sowie zwischen dem posterioren DMN und temporalen Arealen im SN auf. Keine funktionellen Konnektivit{\"a}tsunterschiede zeigten sich f{\"u}r die Saatregionen im SN. Depressive Responder, Non-Responder und die Kontrollprobanden unterschieden sich in ihrer IAc und HRV nicht. Schlussfolgerungen: Die Ergebnisse der Studien unterstreichen, dass bei depressiven Patienten, Respondern und Non-Respondern Unterschiede in der intrinsischen Gehirnaktivit{\"a}t funktioneller Netzwerke bestehen, jedoch nicht in der akkuraten Wahrnehmung des eigenen Herzschlages und der HRV. Therapeutische Interventionen, die auf eine Verbesserung der IAc abzielen, k{\"o}nnten insbesondere f{\"u}r Non-Responder dennoch eine zus{\"a}tzliche Behandlungsm{\"o}glichkeit darstellen. F{\"u}r eine personalisierte Medizin k{\"o}nnte die weitere Erforschung von kortikalen Netzwerken einen wesentlichen Beitrag leisten, um ein individuelles Therapieansprechen zu pr{\"a}dizieren.}, subject = {Depression}, language = {de} } @phdthesis{Biersack2024, author = {Biersack, Florian}, title = {Topological Properties of Quasiconformal Automorphism Groups}, doi = {10.25972/OPUS-35917}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-359177}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {The goal of this thesis is to study the topological and algebraic properties of the quasiconformal automorphism groups of simply and multiply connected domains in the complex plain, in which the quasiconformal automorphism groups are endowed with the supremum metric on the underlying domain. More precisely, questions concerning central topological properties such as (local) compactness, (path)-connectedness and separability and their dependence on the boundary of the corresponding domains are studied, as well as completeness with respect to the supremum metric. Moreover, special subsets of the quasiconformal automorphism group of the unit disk are investigated, and concrete quasiconformal automorphisms are constructed. Finally, a possible application of quasiconformal unit disk automorphisms to symmetric cryptography is presented, in which a quasiconformal cryptosystem is defined and studied.}, subject = {Quasikonforme Abbildung}, language = {en} } @phdthesis{Friedrich2024, author = {Friedrich, Anna-Lena}, title = {FoxO3-mediated, inhibitory effects of CNP on the profibrotic activation of lung fibroblasts}, doi = {10.25972/OPUS-35984}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-359845}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Idiopathic Pulmonary Fibrosis (IPF) is a progressive parenchymal lung disease with limited therapeutic treatments. Pathologically altered lung fibroblasts, called myofibroblasts, exhibit increased proliferation, migration, and collagen production, and drive IPF development and progression. Fibrogenic factors such as Platelet derived growth factor-BB (PDGF-BB) contribute to these pathological alterations. Endogenous counter-regulating factors are barely known. Published studies have described a protective role of exogenously administered C-type Natriuretic Peptide (CNP) in pathological tissue remodeling, for example in heart and liver fibrosis. CNP and its cyclic GMP producing guanylyl cyclase B (GC-B) receptor are expressed in the lungs, but it is unknown whether CNP can attenuate lung fibrosis by this pathway. To address this question, we performed studies in primary cultured lung fibroblasts. To examine the effects of the CNP/GC-B pathway on PDGF-BB-induced collagen production, proliferation, and migration in vitro, lung fibroblasts were cultured from wildtype control and GC-B knockout mice. Human lung fibroblasts from patients with IPF and healthy controls were obtained from the UGMLC Biobank. In RIA experiments, CNP, at 10nM and 100nM, markedly and similarly increased cGMP levels in both the murine and human lung fibroblasts, demonstrating GC-B/cGMP signaling. CNP reduced PDGF-BB induced proliferation and migration of lung fibroblasts in BrdU incorporation and gap closure assays, respectively. CNP strongly decreased PDGF-BB-induced collagen 1/3 expression as measured by immunocytochemistry and immunoblotting. Importantly, the protective actions of CNP were preserved in IPF fibroblasts. It is known that the profibrotic actions of PDGF-BB are partly mediated by phosphorylation and nuclear export of Forkhead Box O3 (FoxO3), a transcription factor downregulated in IPF. CNP prevented PDGF-BB elicited FoxO3 phosphorylation and nuclear exclusion in both murine and human control and IPF fibroblasts. CNP signaling and functions were abolished in GC-B-deficient lung fibroblasts. Taken together, the results show that CNP moderates the PDGF-BB-induced activation and differentiation of human and murine lung fibroblasts to myofibroblasts. This effect is mediated CNP-dependent by GC-B/cGMP signaling and FoxO3 regulation. To follow up the patho-physiological relevance of these results, we are generating mice with fibroblast-restricted GC-B deletion for studies in the model of bleomycin-induced pulmonary fibrosis.}, subject = {Idiopathische pulmonale Fibrose}, language = {en} } @phdthesis{Menger2024, author = {Menger, Kristina Rebekka}, title = {Bauchlagerung f{\"u}r nicht-intubierte ARDS- und COVID-19 Patient/innen: eine systematische {\"U}bersichtsarbeit}, doi = {10.25972/OPUS-35986}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-359865}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Die Bauchlagerung von intubierten ARDS-Patient/innen mit einer schlechten Oxygenierung wird laut Leitlinie seit mehreren Jahren als supportive Therapiemaßnahme empfohlen. Im Rahmen der COVID-19 Pandemie wurde nun erstmalig die Bauchlagerung auch bei hypox{\"a}mischen, nicht-intubierten Patient/innen untersucht. Diese Fragestellung wurde in der vorliegenden Arbeit mittels einer systematischen {\"U}bersichtsarbeit betrachtet. Aufgrund der aktuellen Pandemiesituation wurden neben ARDS-Patient/innen im Allgemeinen insbesondere COVID-19 Patient/innen mit einem akuten Lungenversagen als Subgruppe untersucht. Am 21.11.2020 wurde eine systematische Suche nach Studien in den Datenbanken MEDLINE, Cochrane COVID-19 Study Register und Living Overview of the Evidence platform durchgef{\"u}hrt. Die Ergebnisse wurden, wo m{\"o}glich, in Form einer Meta-Analyse zusammengefasst, in Tabellen darstellt oder deskriptiv beschrieben. Das Risiko f{\"u}r Bias wurde jeweils f{\"u}r die eingeschlossenen kontrollierten Studien mittels ROBINS-I beurteilt. Die Vertrauensw{\"u}rdigkeit der Evidenz der gesamten Arbeit wurde mit Hilfe des GRADE-Ansatzes untersucht. Insgesamt wurden 30 Studien eingeschlossen, davon 4 kontrollierte Studien, keine RCTs. In 3 der kontrollierten Studien wurde die Bauchlagerung bei COVID-19 Patient/innen untersucht, in einer bei Patient/innen mit einem anderweitig verursachten ARDS. Es ist unklar, ob die Bauchlagerung die Intubationsrate (RR = 0,92; 95\% KI: 0,59 - 1,44; I² = 65\%; sehr niedrige Vertrauensw{\"u}rdigkeit der Evidenz), die Mortalit{\"a}t (RR = 0,55; 95\% KI: 0,23 - 1,30; I² = 60\%; sehr niedrige Vertrauensw{\"u}rdigkeit der Evidenz) und die Wahrscheinlichkeit f{\"u}r eine Aufnahme auf die Intensivstation (RR = 0,94; 95\% KI: 0,54 - 1,63; I2 = 71\%; sehr niedrige Vertrauensw{\"u}rdigkeit der Evidenz) verringern kann. Auch f{\"u}r die anderen betrachteten Endpunkte konnte kein signifikanter Effekt der Bauchlagerung nachgewiesen werden Im Vergleich der Subgruppen „Nicht-COVID-19" (8 Studien) und „COVID-19" (22 Studien) konnten in Bezug auf alle betrachteten Endpunkte keine relevanten Unterschiede festgestellt werden. Insgesamt ist die Evidenz nicht ausreichend, um Vor- und Nachteile der Bauchlagerung f{\"u}r nicht-intubierte ARDS Patient/innen gegen{\"u}ber der {\"u}blichen R{\"u}ckenlagerung aufzuzeigen und diese f{\"u}r die Praxis zu empfehlen.}, subject = {Bauchlage}, language = {de} } @phdthesis{Heilig2024, author = {Heilig, Maximilian}, title = {Experimentelle biomechanische Analyse von unterschiedlichen Knochenzementen bei der in-situ-Implantataugmentation}, doi = {10.25972/OPUS-31986}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-319868}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {F{\"u}r den Funktionserhalt nach einer Fragilit{\"a}tsfraktur ist eine stabile Osteosynthese, welche eine fr{\"u}hfunktionelle Nachbehandlung zur Vermeidung l{\"a}ngerer Immobilit{\"a}t erlaubt, mit suffizienter Reposition essenziell. Die stabile Osteosynthese kann in osteoporotischem Knochen jedoch durch dessen schwache biomechanische Eigenschaften limitiert sein. Indem die in-situ-Implantataugmentation mit Knochenzement die Belastbarkeit des Knochens in Implantatn{\"a}he verbessert, kann auch in osteoporotischem Knochen eine stabile Osteosynthese erreicht werden. Ziel dieser Studie war es, eine vielversprechende Formulierung eines Magnesiumphosphatzementes so weiterzuentwickeln, dass deren Anwendung bei der in-situ-Implantataugmentation m{\"o}glich wurde. In einem zweiten Schritt sollte die Formulierung gegen{\"u}ber kommerziell erh{\"a}ltlichen Knochenzementen durch die Materialpr{\"u}fung im Druckversuch und mithilfe eines biomechanischen Testmodells evaluiert werden. Die Vorversuche offenbarten die Nachteile der konventionellen, wasserbasierten Magnesiumphosphatzementformulierung bei der in-situ-Implantataugmentation: „Filter Pressing" und eine unpassende Viskosit{\"a}t limitierten die Anwendung. Erst die Formulierung als vorgemischte Magnesiumphosphat-Paste mit Propan-1,2,3,-triol als Bindemittel verbesserte die Injizierbarkeit und erm{\"o}glichte eine verl{\"a}ssliche in-situ- Implantataugmentation. Bei der Zementevaluation zeigte Traumacem™ V+ als PMMA-Zement die h{\"o}chste Kompressionsfestigkeit im Druckversuch, die h{\"o}chste Rotationsstabilit{\"a}t in der Torsionspr{\"u}fung und eine sehr gute Injizierbarkeit. Paste-CPC und MgPO-Paste zeigten sich in Druckversuch und Torsionspr{\"u}fung untereinander vergleichbar, wobei die MgPO-Paste tendenziell eine initial h{\"o}here Stabilit{\"a}t aufweist. F{\"u}r den Parameter Normalisiertes Drehmoment zeigten alle Zementgruppen einen statistisch signifikanten Unterschied zur Kontrollgruppe, was den stabilit{\"a}tssteigernden Effekt aller verwendeten Knochenzemente demonstriert. Es konnte kein Effekt der in-situ-Implantataugmentation auf Phimax, also auf den, bis zum maximalen Drehmoment gefahrenen Winkel, gefunden werden. Die Korrelation zwischen Drehmoment und Knochendichte zeigte den Zusammenhang zwischen Rotationsstabilit{\"a}t und Knochendichte f{\"u}r die Kontrollgruppe, welcher jedoch bei Zementaugmentation mit Traumacem™ V+ und MgPO-Paste verschwand. Zusammengefasst wurde in dieser Studie erstmals eine biologisch vorteilhafte MgPO- Paste f{\"u}r den Einsatz bei der in-situ-Implantataugmentation entwickelt und verwendet. Weiter konnte der stabilit{\"a}tssteigernde Effekt der Zementaugmentation mit dieser MgPO-Paste, sowie mit den Knochenzementen Traumacem™ V+ und Paste-CPC, f{\"u}r TFNA-Schenkelhalsklingen im isolierten Femurkopf-Modell gezeigt werden. Der Einsatz der MgPO-Paste bei der in-situ-Implantataugmentation bedarf bis zur eventuellen Marktreife einer Verbesserung der Injizierbarkeit sowie der Evaluation in klinischen Studien.}, subject = {Osteoporose}, language = {de} } @phdthesis{Hajduk2024, author = {Hajduk, Maurice Martin}, title = {Darf es etwas mehr sein? Neuroenhancement im Studium - eine Befragung an W{\"u}rzburger Hochschulen}, doi = {10.25972/OPUS-35981}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-359812}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Neuroenhancement (NE) bezeichnet die Einnahme psychotroper Substanzen mit dem Ziel der geistigen Leistungssteigerung oder Beruhigung. NE wird durch gesunde Perso- nen genutzt. Es besteht somit keine Indikation zur Einnahme psychotroper Wirkstoffe. Zum NE genutzte Substanzen sind z.B. Koffeintabletten, verschreibungspflichtige Medi- kamente oder illegale Substanzen. Die bisherige Forschung findet Hinweise auf einen Zusammenhang zwischen NE und ADHS-Symptomen, einigen Aspekten psychischer Gesundheit, sowie Substanzkonsum. Bisher gibt es keine Forschung zu NE am Hoch- schulstandort W{\"u}rzburg. Es wurde eine anonyme online Querschnittsbefragung im ersten Quartal 2021 durchge- f{\"u}hrt. Eingeladen waren 5600 Studierende der Julius-Maximilians-Universit{\"a}t W{\"u}rzburg und der Hochschule f{\"u}r angewandte Wissenschaften W{\"u}rzburg Schweinfurt. Der Frage- bogen bestand aus 53 Items und enthielt u. a. die folgenden validierten Messinstrumente: ASRS, PSS-10, PHQ-4 und AUDIT-C. Die Response Rate lag bei 18\% (n = 1011). Das Wissen {\"u}ber NE war weit unter den Stu- dierenden verbreitet. Die Pr{\"a}valenz f{\"u}r Neuroenhancement im Studium lag bei 12.7\%. Die drei meistgenannten Substanzen waren Koffeintabletten (6.6\%), Cannabis (4.5\%) und Methylphenidat (4.3\%). H{\"a}ufigster Anlass f{\"u}r NE war die Pr{\"u}fungsvorbereitung. Es zeigten sich deutliche Unterschiede zwischen den Fachbereichen, u.a. hinsichtlich der Pr{\"a}valenz von NE. ADHS-Symptomen, Stress, {\"A}ngstlichkeit, und Depressivit{\"a}t waren positiv mit NE assoziiert. Ein st{\"a}rkerer Effekt ergab sich f{\"u}r den Zusammenhang zwi- schen NE und riskanten Alkoholkonsum bzw. Tabakkonsum. Diese Ergebnisse wurden durch eine binomial logistische Regression best{\"a}tigt. Die konsumierten Substanzen, das Wissen {\"u}ber NE, die Pr{\"a}valenz von NE und die Gr{\"u}nde f{\"u}r dessen Nutzung f{\"u}gen sich nahtlos in die bisherige Forschung ein. Auch die Assoziation zwischen ADHS-Symptomen, Stress, {\"A}ngstlichkeit, Depressivit{\"a}t, riskan- tem Alkoholkonsum und Tabakkonsum best{\"a}tigt bisherige Forschungsergebnisse. Es konnte gezeigt werden, dass rund ein Zehntel der Studierenden NE bereits genutzt haben. In Anbetracht der gesundheitlichen Gefahren, die mit NE einhergehen ist die Etab- lierung bzw. der Ausbau von Aufkl{\"a}rung-, Beratungs- und Hilfsangeboten f{\"u}r Studie- rende anzustreben sowie weitere Forschung zum Thema indiziert.}, subject = {Psychische Gesundheit}, language = {de} } @phdthesis{Heinrich2024, author = {Heinrich, Marieke}, title = {Bildgebung des Prostatakarzinoms im PSMA-PET/CT: Die halbautomatische Quantifizierung des Tumorvolumens zeigt (noch) keine verbesserte Pr{\"a}diktion des Krankheitsverlaufs}, doi = {10.25972/OPUS-35968}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-359684}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Die molekularen Parameter PSMA-TV und TL-PSMA im 68Ga-PSMA PET/CT leiten sich ab von MTV und TLG im FDG PET/CT. Mit der vorliegenden Arbeit wurden die Grenzen neuer Autosegmentierungsprogramme durch eine maximale Belastung mit großen Tumorvolumina von Patienten unter taxanbasierter Chemotherapie ausgelotet. Die Programme Syngo.via und FIJI kamen zu vergleichbaren Ergebnissen. Patienten mit einem Gleason Score von 8-10 zeigten unter Therapie eine signifikante Zunahme des PSMA-TV und TL-PSMA im Gegensatz zu Patienten mit Gleason Score 6-7b. Ein hoher PSA-Wert korrelierte zu allen Zeitpunkten signifikant mit einem hohen PSMA-TV und TL-PSMA, ebenso korrelierte ein steigender PSA-Wert signifikant mit steigenden Werten in PSMA-TV und TL-PSMA. Patienten mit einem biochemischen Progress und einem Progress nach modifiziertem PERCIST zeigten vor Therapie ein signifikant h{\"o}heres PSMA-TV und TL-PSMA als Patienten ohne Progress und unter Therapie eine signifikante Zunahme des PSMA-TV und TL-PSMA im Vergleich zu Patienten ohne Progress. Eine Einteilung des Therapieansprechens aller Patienten in CR, PR, SD und PD nach PSMA-TV, TL-PSMA, PSA-Wert und modifiziertem PERCIST stimmte nicht in allen Patienten {\"u}berein. Ein signifikant k{\"u}rzeres Gesamt{\"u}berleben zeigten lediglich Patienten mit einem nach dem PSA-Wert definiertem Progress. Im praktischen Vergleich der beiden Programme ben{\"o}tigte Syngo.via f{\"u}r eine komplette Segmentierung signifikant mehr Zeit als FIJI, vor allem da der Wechsel von VOI zu VOI signifikant l{\"a}nger dauerte. Unabh{\"a}ngig vom Autosegmentierungsprogramm dauerte eine komplette Segmentierung l{\"a}nger, je gr{\"o}ßer das PSMA-TV und das TL-PSMA war, je mehr VOIs das Programm automatisch setzte und je mehr VOIs manuell gel{\"o}scht und neu gesetzt wurden. In der Gesamtschau bieten PSMA-TV und TL-PSMA in Kombination mit den sich schnell weiterentwickelnden Autosegmentierungs-Programmen die M{\"o}glichkeit, auch sehr hohe Tumorlasten des PCas objektiv und vergleichbar zu beschreiben.}, subject = {Hormonrefrakt{\"a}rer Prostatakrebs}, language = {de} } @phdthesis{Hammel2024, author = {Hammel, Clara}, title = {Einfluss longitudinaler Ver{\"a}nderungen der linksventrikul{\"a}ren Ejektionsfraktion auf das Langzeit{\"u}berleben bei Herzinsuffizienzpatienten mit leicht reduzierter Ejektionsfraktion oder reduzierter Ejektionsfraktion}, doi = {10.25972/OPUS-36002}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-360025}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Diese retrospektive Studie an der Universit{\"a}tsklinik W{\"u}rzburg diente der Beurteilung der longitudinalen Funktion in Bezug auf die Gesamtmortalit{\"a}t bei Patienten mit HFmrEF und HFrEF. Die Gruppierung erfolgte anhand der jeweiligen Baseline LVEF. Eine weitere Unterteilung erfolgte in eine isch{\"a}mische oder nicht-isch{\"a}mische Genese der HF. Die Subgruppen wurden anhand der Baseline klinischen Charakteristika sowie der echokardiographischen Parameter verglichen. Hier ließ sich ein relativ {\"a}hnliches Patientenklientel mit vergleichbarem Alter, Geschlecht, BMI sowie kardialen Risikofaktoren zeigen. Signifikante Unterschiede ergab der Vergleich des NYHA-Stadiums, der Nierenfunktion sowie des Auftretens von Myokardinfarkten. Die Ver{\"a}nderung der LVEF {\"u}ber die Zeit hat einen zentralen Stellenwert zur Evaluation des Outcomes von Patienten mit HFmrEF und HFrEF. Eine Verbesserung der LVEF fand sich signifikant h{\"a}ufiger bei HFrEF Patienten als bei HFmrEF Patienten, welche {\"u}ber die Zeit signifikant h{\"a}ufiger eine stabile LVEF aufwiesen. Außerdem war nach Auswertung der {\"U}berlebenskurven nach Kaplan-Meier in HFmrEF Patienten eine verbesserte oder unver{\"a}nderte LVEF {\"u}ber die Zeit mit einem besseren {\"U}berleben verbunden, vor allem bei Patienten mit isch{\"a}mischer {\"A}tiologie. In der HFrEF Gruppe konnte gezeigt werden, dass sowohl Patienten mit isch{\"a}mischer als auch mit nicht-isch{\"a}mischer {\"A}tiologie bei Vorliegen einer verbesserten oder unver{\"a}nderten LVEF {\"u}ber die Zeit ein besseres Outcome aufwiesen. Eine erniedrigte MAPSE bedeutete vor allem bei HFmrEF Patienten mit nicht-isch{\"a}mischer {\"A}tiologie ein schlechteres Outcome. Die Ergebnisse dienten unter anderem der weiteren Charakterisierung der HFmrEF und HFrEF Gruppe sowie der Identifikation von Faktoren zur Beurteilung der Ver{\"a}nderung der LVEF {\"u}ber die Zeit und der Prognose des Langzeit{\"u}berlebens beider Gruppen. Ziel f{\"u}r die Zukunft sollte sein, auch f{\"u}r HFmrEF Patienten evidenzbasierte Herzinsuffizienz Therapien zu etablieren.}, subject = {Transthorakale Echokardiographie}, language = {de} } @article{AllertFoersterSvenssonetal.2018, author = {Allert, Stefanie and F{\"o}rster, Toni M. and Svensson, Carl-Magnus and Richardson, Jonathan P. and Pawlik, Tony and Hebecker, Betty and Rudolphi, Sven and Juraschitz, Marc and Schaller, Martin and Blagojevic, Mariana and Morschh{\"a}user, Joachim and Figge, Marc Thilo and Jacobsen, Ilse D. and Naglik, Julian R. and Kasper, Lydia and Mogavero, Selene and Hube, Bernhard}, title = {\(Candida\) \(albicans\)-Induced Epithelial Damage Mediates Translocation through Intestinal Barriers}, series = {mBio}, volume = {9}, journal = {mBio}, number = {3}, doi = {10.1128/mBio.00915-18}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-221084}, pages = {1-20}, year = {2018}, abstract = {Life-threatening systemic infections often occur due to the translocation of pathogens across the gut barrier and into the bloodstream. While the microbial and host mechanisms permitting bacterial gut translocation are well characterized, these mechanisms are still unclear for fungal pathogens such as Candida albicans, a leading cause of nosocomial fungal bloodstream infections. In this study, we dissected the cellular mechanisms of translocation of C. albicans across intestinal epithelia in vitro and identified fungal genes associated with this process. We show that fungal translocation is a dynamic process initiated by invasion and followed by cellular damage and loss of epithelial integrity. A screen of >2,000 C. albicans deletion mutants identified genes required for cellular damage of and translocation across enterocytes. Correlation analysis suggests that hypha formation, barrier damage above a minimum threshold level, and a decreased epithelial integrity are required for efficient fungal translocation. Translocation occurs predominantly via a transcellular route, which is associated with fungus-induced necrotic epithelial damage, but not apoptotic cell death. The cytolytic peptide toxin of C. albicans, candidalysin, was found to be essential for damage of enterocytes and was a key factor in subsequent fungal translocation, suggesting that transcellular translocation of C. albicans through intestinal layers is mediated by candidalysin. However, fungal invasion and low-level translocation can also occur via non-transcellular routes in a candidalysin-independent manner. This is the first study showing translocation of a human-pathogenic fungus across the intestinal barrier being mediated by a peptide toxin. IMPORTANCE Candida albicans, usually a harmless fungus colonizing human mucosae, can cause lethal bloodstream infections when it manages to translocate across the intestinal epithelium. This can result from antibiotic treatment, immune dysfunction, or intestinal damage (e.g., during surgery). However, fungal processes may also contribute. In this study, we investigated the translocation process of C. albicans using in vitro cell culture models. Translocation occurs as a stepwise process starting with invasion, followed by epithelial damage and loss of epithelial integrity. The ability to secrete candidalysin, a peptide toxin deriving from the hyphal protein Ece1, is key: C. albicans hyphae, secreting candidalysin, take advantage of a necrotic weakened epithelium to translocate through the intestinal layer.}, language = {en} } @phdthesis{Abelein2024, author = {Abelein, Christian Karl}, title = {„Ich habe mich so daran gew{\"o}hnt, daß ich beinahe nie dichte ohne zugleich zu singen!" - Der Briefwechsel zwischen August Heinrich Hoffmann von Fallersleben (1798-1874) und Hans Michael Schletterer (1824-1893) als Dokument einer konstruktiven Zusammenarbeit zwischen Dichter und Komponist im 19. Jahrhundert.}, doi = {10.25972/OPUS-36386}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-363862}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Die von Friedhelm Brusniak und Ulrich Konrad betreute und angenommene Dissertation nimmt den Briefwechsel zwischen August Heinrich Hoffmann von Fallersleben und dem j{\"u}ngeren Augsburger Kapellmeister und Komponisten Hans Michael Schletterer in den Jahren 1862 bis 1873 in den Blick und dokumentiert dabei Hoffmanns Einfluss auf den Entstehungsprozess der Vertonungen seiner Lieder, besonders seiner Kinderlieder. Die Arbeit beleuchtet zudem den Erfahrungsschatz, den sich der ‚Dichter-S{\"a}nger' Hoffmann von Fallersleben auch durch die Zusammenarbeit mit anderen Musikern seiner Zeit, vorrangig Ludwig Christian Erk (1807-1883) und Ernst Heinrich Leopold Richter (1805-1876), erworben hatte. Dar{\"u}ber hinaus werden in der Korrespondenz Themen des gesellschaftlichen und politischen Lebens, der privaten und beruflichen Situation beider wie auch Hoffmanns Rolle als v{\"a}terlicher Berater Schletterers ber{\"u}hrt. Die Arbeit darf als neuer substantieller Beitrag der Hoffmann-Forschung und der interdisziplin{\"a}ren Liedforschung angesehen werden, der insbesondere der Kinderliedforschung neue Impulse verleiht.}, subject = {Hoffmann von Fallersleben, August Heinrich}, language = {de} } @article{GhoshHoenscheidDueckersetal.2017, author = {Ghosh, Sujal and H{\"o}nscheid, Andrea and D{\"u}ckers, Gregor and Ginzel, Sebastian and Gohlke, Holger and Gombert, Michael and Kempkes, Bettina and Klapper, Wolfram and Kuhlen, Michaela and Laws, Hans-J{\"u}rgen and Linka, Ren{\´e} Martin and Meisel, Roland and Mielke, Christian and Niehues, Tim and Schindler, Detlev and Schneider, Dominik and Schuster, Friedhelm R. and Speckmann, Carsten and Borkhardt, Arndt}, title = {Human RAD52 - a novel player in DNA repair in cancer and immunodeficiency}, series = {Haematologica}, volume = {102}, journal = {Haematologica}, number = {2}, doi = {10.3324/haematol.2016.155838}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-180862}, pages = {e69-e72}, year = {2017}, abstract = {No abstract available.}, language = {en} } @article{HennrichRomanovHornetal.2018, author = {Hennrich, Marco L. and Romanov, Natalie and Horn, Patrick and Jaeger, Samira and Eckstein, Volker and Steeples, Violetta and Ye, Fei and Ding, Ximing and Poisa-Beiro, Laura and Mang, Ching Lai and Lang, Benjamin and Boultwood, Jacqueline and Luft, Thomas and Zaugg, Judith B. and Pellagatti, Andrea and Bork, Peer and Aloy, Patrick and Gavin, Anne-Claude and Ho, Anthony D.}, title = {Cell-specific proteome analyses of human bone marrow reveal molecular features of age-dependent functional decline}, series = {Nature Communications}, volume = {9}, journal = {Nature Communications}, doi = {10.1038/s41467-018-06353-4}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-319877}, year = {2018}, abstract = {Diminishing potential to replace damaged tissues is a hallmark for ageing of somatic stem cells, but the mechanisms remain elusive. Here, we present proteome-wide atlases of age-associated alterations in human haematopoietic stem and progenitor cells (HPCs) and five other cell populations that constitute the bone marrow niche. For each, the abundance of a large fraction of the ~12,000 proteins identified is assessed in 59 human subjects from different ages. As the HPCs become older, pathways in central carbon metabolism exhibit features reminiscent of the Warburg effect, where glycolytic intermediates are rerouted towards anabolism. Simultaneously, altered abundance of early regulators of HPC differentiation reveals a reduced functionality and a bias towards myeloid differentiation. Ageing causes alterations in the bone marrow niche too, and diminishes the functionality of the pathways involved in HPC homing. The data represent a valuable resource for further analyses, and for validation of knowledge gained from animal models.}, language = {en} } @article{HinesMaricHinesetal.2018, author = {Hines, Rochelle M. and Maric, Hans Michael and Hines, Dustin J. and Modgil, Amit and Panzanelli, Patrizia and Nakamura, Yasuko and Nathanson, Anna J. and Cross, Alan and Deeb, Tarek and Brandon, Nicholas J. and Davies, Paul and Fritschy, Jean-Marc and Schindelin, Hermann and Moss, Stephen J.}, title = {Developmental seizures and mortality result from reducing GABAA receptor α2-subunit interaction with collybistin}, series = {Nature Communications}, volume = {9}, journal = {Nature Communications}, doi = {10.1038/s41467-018-05481-1}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-320719}, year = {2018}, abstract = {Fast inhibitory synaptic transmission is mediated by γ-aminobutyric acid type A receptors (GABAARs) that are enriched at functionally diverse synapses via mechanisms that remain unclear. Using isothermal titration calorimetry and complementary methods we demonstrate an exclusive low micromolar binding of collybistin to the α2-subunit of GABAARs. To explore the biological relevance of collybistin-α2-subunit selectivity, we generate mice with a mutation in the α2-subunit-collybistin binding region (Gabra2-1). The mutation results in loss of a distinct subset of inhibitory synapses and decreased amplitude of inhibitory synaptic currents. Gabra2-1 mice have a striking phenotype characterized by increased susceptibility to seizures and early mortality. Surviving Gabra2-1 mice show anxiety and elevations in electroencephalogram δ power, which are ameliorated by treatment with the α2/α3-selective positive modulator, AZD7325. Taken together, our results demonstrate an α2-subunit selective binding of collybistin, which plays a key role in patterned brain activity, particularly during development.}, language = {en} } @article{HernandezJoseRamirezMinguillonetal.2018, author = {Hern{\´a}ndez, Gonzalo and Jos{\´e} Ram{\´i}rez, Mar{\´i}a and Minguill{\´o}n, Jordi and Quiles, Paco and Ruiz de Garibay, Gorka and Aza-Carmona, Miriam and Bogliolo, Massimo and Pujol, Roser and Prados-Carvajal, Rosario and Fern{\´a}ndez, Juana and Garc{\´i}a, Nadia and L{\´o}pez, Adri{\`a} and Guti{\´e}rrez-Enr{\´i}quez, Sara and Diez, Orland and Ben{\´i}tez, Javier and Salinas, M{\´o}nica and Teul{\´e}, Alex and Brunet, Joan and Radice, Paolo and Peterlongo, Paolo and Schindler, Detlev and Huertas, Pablo and Puente, Xose S. and L{\´a}zaro, Conxi and {\`A}ngel Pujana, Miquel and Surrall{\´e}s, Jordi}, title = {Decapping protein EDC4 regulates DNA repair and phenocopies BRCA1}, series = {Nature Communications}, volume = {9}, journal = {Nature Communications}, doi = {10.1038/s41467-018-03433-3}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-319929}, year = {2018}, abstract = {BRCA1 is a tumor suppressor that regulates DNA repair by homologous recombination. Germline mutations in BRCA1 are associated with increased risk of breast and ovarian cancer and BRCA1 deficient tumors are exquisitely sensitive to poly (ADP-ribose) polymerase (PARP) inhibitors. Therefore, uncovering additional components of this DNA repair pathway is of extreme importance for further understanding cancer development and therapeutic vulnerabilities. Here, we identify EDC4, a known component of processing-bodies and regulator of mRNA decapping, as a member of the BRCA1-BRIP1-TOPBP1 complex. EDC4 plays a key role in homologous recombination by stimulating end resection at double-strand breaks. EDC4 deficiency leads to genome instability and hypersensitivity to DNA interstrand cross-linking drugs and PARP inhibitors. Lack-of-function mutations in EDC4 were detected in BRCA1/2-mutation-negative breast cancer cases, suggesting a role in breast cancer susceptibility. Collectively, this study recognizes EDC4 with a dual role in decapping and DNA repair whose inactivation phenocopies BRCA1 deficiency.}, language = {en} } @phdthesis{Swain2024, author = {Swain, Asim}, title = {Helically Twisted Graphene Nanoribbons: Bottom-up Stereospecific Synthesis and Characterization}, doi = {10.25972/OPUS-36016}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-360164}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Over the past decade, substantial progress has been made in synthesizing atomically precise carbon nanostructures, with a focus on graphene nanoribbons (NRs) through advanced synthetic techniques. Despite these advancements, precise control over the stereochemistry of twisted NRs remains challenging. This thesis introduces a strategic approach to achieve absolute control over the single-handed helical conformation in a cove-edged NR, utilizing enantiopure [n]helicenes as a molecular wrench to intricately dictate the overall conformation of the NR. Enantiopure [7]helicenes were stitched to the terminal K-regions of a conjugated pyrene NR using a stereospecific and site-selective palladium(II)-catalyzed annulative π-extension (APEX) reaction, resulting in a helically twisted NR with an end-to-end twist of 171°, the second-largest twist reported so far in the literature for twistacenes. The helical end-to-end twist increases with each addition of benzene ring to the central acene core, suggesting that the extra strain induced by the terminal [7]helicenes maintains such a high level of twist. The quantum chemical calculations were conducted to investigate the impact of twisting on the conformational population. At room temperature, the central backbone of the nanoribbon adopts the twisted helicity opposite to that of the attached [7]helicene, constituting around 99\% of the molecular population. For instance, (P)-[7]helicenes produce a left-handed helical nanoribbon, while (M)-[7]helicenes produce a right-handed helical nanoribbon. In the presence of helicenes of opposite chirality, the nanoribbon adopts a waggling conformation. The helically twisted nanoribbons are conformationally robust, as variable temperature chiroptical measurements showed no change in CD and CPL spectra. The proposed strategy, involving the late-stage addition of [n]helicene units through the APEX reaction, appears promising for streamlining the synthesis of diverse cove edge NR variants with desired conformations. In addition to single-handed helically twisted nanoribbons, the symmetry-based functional properties of C2 and C1 symmetric pyrene-fused single and double [n]helicene compounds were studied. Owing to its higher structural rigidity, the C1 symmetric heptagonal ring-containing molecules exhibited exceptional configurational stability along with remarkable chiroptical properties compared to their C2 symmetric as well as pristine helicene congeners.}, subject = {Helicene}, language = {en} } @phdthesis{Ramirez2024, author = {Ramirez, Yesid A.}, title = {Structural basis of ubiquitin recognition and rational design of novel covalent inhibitors targeting Cdu1 from \(Chlamydia\) \(Trachomatis\)}, doi = {10.25972/OPUS-19168}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-191683}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {The WHO-designated neglected-disease pathogen Chlamydia trachomatis (CT) is a gram-negative bacterium responsible for the most frequently diagnosed sexually transmitted infection worldwide. CT infections can lead to infertility, blindness and reactive arthritis, among others. CT acts as an infectious agent by its ability to evade the immune response of its host, which includes the impairment of the NF-κB mediated inflammatory response and the Mcl1 pro-apoptotic pathway through its deubiquitylating, deneddylating and transacetylating enzyme ChlaDUB1 (Cdu1). Expression of Cdu1 is also connected to host cell Golgi apparatus fragmentation, a key process in CT infections. Cdu1 may this be an attractive drug target for the treatment of CT infections. However, a lead molecule for the development of novel potent inhibitors has been unknown so far. Sequence alignments and phylogenetic searches allocate Cdu1 in the CE clan of cysteine proteases. The adenovirus protease (adenain) also belongs to this clan and shares a high degree of structural similarity with Cdu1. Taking advantage of topological similarities between the active sites of Cdu1 and adenain, a target-hopping approach on a focused set of adenain inhibitors, developed at Novartis, has been pursued. The thereby identified cyano-pyrimidines represent the first active-site directed covalent reversible inhibitors for Cdu1. High-resolution crystal structures of Cdu1 in complex with the covalently bound cyano-pyrimidines as well as with its substrate ubiquitin have been elucidated. The structural data of this thesis, combined with enzymatic assays and covalent docking studies, provide valuable insights into Cdu1s activity, substrate recognition, active site pocket flexibility and potential hotspots for ligand interaction. Structure-informed drug design permitted the optimization of this cyano-pyrimidine based scaffold towards HJR108, the first molecule of its kind specifically designed to disrupt the function of Cdu1. The structures of potentially more potent and selective Cdu1 inhibitors are herein proposed. This thesis provides important insights towards our understanding of the structural basis of ubiquitin recognition by Cdu1, and the basis to design highly specific Cdu1 covalent inhibitors.}, subject = {Ubiquitin}, language = {en} } @phdthesis{Dietrich2024, author = {Dietrich, Oliver}, title = {Integrating single-cell multi-omics to decipher host-pathogen interactions}, doi = {10.25972/OPUS-36013}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-360138}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Interactions between host and pathogen determine the development, progression and outcomes of disease. Medicine benefits from better descriptions of these interactions through increased precision of prevention, diagnosis and treatment of diseases. Single-cell genomics is a disruptive technology revolutionizing science by increasing the resolution with which we study diseases. Cell type specific changes in abundance or gene expression are now routinely investigated in diseases. Meanwhile, detecting cellular phenotypes across diseases can connect scientific fields and fuel discovery. Insights acquired through systematic analysis of high resolution data will soon be translated into clinical practice and improve decision making. Therefore, the continued use of single-cell technologies and their application towards clinical samples will improve molecular interpretation, patient stratification, and the prediction of outcomes. In the past years, I was fortunate to participate in interdisciplinary research groups bridging biology, clinical research and data science. I was able to contribute to diverse projects through computational analysis and biological interpretation of sequencing data. Together, we were able to discover cellular phenotypes that influence disease progression and outcomes as well as the response to treatment. Here, I will present four studies that I have conducted in my PhD. First, we performed a case study of relapse from cell-based immunotherapy in Multiple Myeloma. We identified genomic deletion of the epitope as mechanism of immune escape and implicate heterozygosity or monosomy of the genomic locus at baseline as a potential risk factor. Second, we investigated the pathomechanisms of severe COVID-19 at the earliest stage of the COVID- 19 pandemic in Germany in March 2020. We discovered that profibrotic macrophages and lung fibrosis can be caused by SARS-CoV-2 infection. Third, we used a mouse model of chronic infection with Staphylococcus aureus that causes Osteomyelitis similar to the human disease. We were able to identify dysregulated immunometabolism associated with the generation of myeloid-derived suppressor cells (MDSC). Fourth, we investigated Salmonella infection of the human small intestine in an in vitro model and describe features of pathogen invasion and host response. Overall, I have been able to successfully employ single-cell sequencing to discover important aspects of diseases ranging from development to treatment and outcome. I analyzed samples from the clinics, human donors, mouse models and organoid models to investigate different aspects of diseases and managed to integrate data across sample types, technologies and diseases. Based on successful studies, we increased our efforts to combine data from multiple sources to build comprehensive references for the integration of large collections of clinical samples. Our findings exemplify how single-cell sequencing can improve clinical research and highlights the potential of mechanistic discoveries to drive precision medicine.}, subject = {Einzelzellanalyse}, language = {en} } @phdthesis{Zhao2024, author = {Zhao, Suting}, title = {Symmetry Resolution of Entanglement in Holography}, doi = {10.25972/OPUS-36385}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-363854}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {This thesis investigates the charged moments and the symmetry-resolved entanglement entropy in the context of the AdS3/CFT2 duality. In the first part, I focus on the holographic U(1) Chern-Simons-Einstein gravity, a toy model of AdS3/CFT2 with U(1) Kac-Moody symmetry. I start with the vacuum background with a single entangling interval. I show that, apart from a partition function in the grand canonical ensemble, the charged moments can also be interpreted as the two-point function of vertex operators on the replica surface. For the holographic description, I propose a duality between the bulk U(1) Wilson line and the boundary vertex operators. I verify this duality by deriving the effective action for the Chern-Simons fields and comparing the result with the vertex correlator. In the twist field approach, I show that the charged moments are given by the correlation function of the charged twist operators and the additional background operators. To solve the correlation functions involved, I prove the factorization of the U(1) extended conformal block into a U(1) block and a Virasoro block. The general expression for the U(1) block is derived by directly summing over the current descendant states, and the result shows that it takes an identical form as the vertex correlators. This leads to the conclusion that the disjoint Wilson lines compute the neutral U(1) block. The final result for the symmetry-resolved entanglement entropy shows that it is always charge-independent in this model. In the second part, I study charged moments in higher spin holography, where the boundary theory is a CFT with W3 symmetry. I define the notion of the higher spin charged moments by introducing a spin-3 modular charge operator. Restricting to the vacuum background with a single entangling interval, I employ the grand canonical ensemble interpretation and calculate the charged moments via the known higher spin black hole solution. On the CFT side, I perform a perturbative expansion for the higher spin charged moments in terms of the connected correlation functions of the spin-3 modular charge operators. Using the recursion relation for the correlation functions of the W3 currents, I evaluate the charged moments up to the quartic order of the chemical potential. The final expression matches with the holographic result. My results both for U(1) Chern-Simons Einstein gravity and W3 higher spin gravity constitute novel checks of the AdS3/CFT2 correspondence.}, subject = {AdS-CFT-Korrespondenz}, language = {en} } @phdthesis{Hahn2024, author = {Hahn, Sarah}, title = {Investigating non-canonical, 5' UTR-dependent translation of MYC and its impact on colorectal cancer development}, doi = {10.25972/OPUS-36420}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-364202}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Colorectal cancer (CRC) is the second most common tumour disease in Germany, with the sequential accumulation of certain mutations playing a decisive role in the transition from adenoma to carcinoma. In particular, deregulation of the Wnt signalling pathway and the associated deregulated expression of the MYC oncoprotein play a crucial role. Targeting MYC thus represents an important therapeutic approach in the treatment of tumours. Since direct inhibition of MYC is challenging, various approaches have been pursued to date to target MYC indirectly. The MYC 5' UTR contains an internal ribosomal entry site (IRES), which has a particular role in the initiation of MYC translation, especially in multiple myeloma. As basis for this work, it was hypothesised on the basis of previous data that translation of MYC potentially occurs via its IRES in CRC as well. Based on this, two IRES inhibitors were tested for their potential to regulate MYC expression in CRC cells. In addition, alternative, 5' UTR-dependent translation of MYC and interacting factors were investigated. EIF3D was identified as a MYC 5' UTR binding protein which has the potential to regulate MYC expression in CRC. The results of this work suggest that there is a link between eIF3D and MYC expression/translation, rendering eIF3D a potential therapeutic target for MYC-driven CRCs.}, subject = {Myc}, language = {en} } @phdthesis{Merscher2024, author = {Merscher, Alma-Sophia}, title = {To Fear or not to Fear: Unraveling the (Oculo)motor and Autonomic Components of Defensive States in Humans}, doi = {10.25972/OPUS-32791}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-327913}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Defensive behaviors in response to threats are key factors in maintaining mental and physical health, but their phenomenology remains poorly understood. Prior work reported an inhibition of oculomotor activity in response to avoidable threat in humans that reminded of freezing behaviors in rodents. This notion of a homology between defensive responding in rodents and humans was seconded by concomitant heart rate decrease and skin conductance increase. However, several aspects of this presumed defense state remained ambiguous. For example, it was unclear whether the observed oculomotor inhibition would 1) robustly occur during preparation for threat-avoidance irrespective of task demands, 2) reflect a threat-specific defensive state, 3) be related to an inhibition of somatomotor activity as both motion metrics have been discussed as indicators for freezing behaviors in humans, and 4) manifest in unconstrained settings. We thus embarked on a series of experiments to unravel the robustness, threat-specificity, and validity of previously observed (oculo)motor and autonomic dynamics upon avoidable threat in humans. We provided robust evidence for reduced gaze dispersion, significantly predicting the speed of subsequent motor reactions across a wide range of stimulus contexts. Along this gaze pattern, we found reductions in body movement and showed that the temporal profiles between gaze and body activity were positively related within individuals, suggesting that both metrics reflect the same construct. A simultaneous activation of the parasympathetic (i.e., heart rate deceleration) and sympathetic (i.e., increased skin conductance and pupil dilation) nervous system was present in both defensive and appetitive contexts, suggesting that these autonomic dynamics are not only sensitive to threat but reflecting a more general action-preparatory mechanism. We further gathered evidence for two previously proposed defensive states involving a decrease of (oculo)motor activity in a naturalistic, unconstrained virtual reality environment. Specifically, we observed a state consisting of a cessation of ongoing behaviors and orienting upon relatively distal, ambiguous threat (Attentive Immobility) while an entire immobilization and presumed allocation of attention to the threat stimulus became apparent upon approaching potential threat (Immobility under Attack). Taken together, we provided evidence for specific oculomotor and autonomic dynamics upon increasing levels of threat that may inspire future translational work in rodents and humans on shared mechanisms of threat processing, ultimately supporting the development of novel therapeutic approaches.}, subject = {Furcht}, language = {en} } @phdthesis{Yu2024, author = {Yu, Yanying}, title = {Applied machine learning for the analysis of CRISPR-Cas systems}, doi = {10.25972/OPUS-32021}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-320219}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Among the defense strategies developed in microbes over millions of years, the innate adaptive CRISPR-Cas immune systems have spread across most of bacteria and archaea. The flexibility, simplicity, and specificity of CRISPR-Cas systems have laid the foundation for CRISPR-based genetic tools. Yet, the efficient administration of CRISPR-based tools demands rational designs to maximize the on-target efficiency and off-target specificity. Specifically, the selection of guide RNAs (gRNAs), which play a crucial role in the target recognition of CRISPR-Cas systems, is non-trivial. Despite the fact that the emerging machine learning techniques provide a solution to aid in gRNA design with prediction algorithms, design rules for many CRISPR-Cas systems are ill-defined, hindering their broader applications. CRISPR interference (CRISPRi), an alternative gene silencing technique using a catalytically dead Cas protein to interfere with transcription, is a leading technique in bacteria for functional interrogation, pathway manipulation, and genome-wide screens. Although the application is promising, it also is hindered by under-investigated design rules. Therefore, in this work, I develop a state-of-art predictive machine learning model for guide silencing efficiency in bacteria leveraging the advantages of feature engineering, data integration, interpretable AI, and automated machine learning. I first systematically investigate the influential factors that attribute to the extent of depletion in multiple CRISPRi genome-wide essentiality screens in Escherichia coli and demonstrate the surprising dominant contribution of gene-specific effects, such as gene expression level. These observations allowed me to segregate the confounding gene-specific effects using a mixed-effect random forest (MERF) model to provide a better estimate of guide efficiency, together with the improvement led by integrating multiple screens. The MERF model outperformed existing tools in an independent high-throughput saturating screen. I next interpret the predictive model to extract the design rules for robust gene silencing, such as the preference for cytosine and disfavoring for guanine and thymine within and around the protospacer adjacent motif (PAM) sequence. I further incorporated the MERF model in a web-based tool that is freely accessible at www.ciao.helmholtz-hiri.de. When comparing the MERF model with existing tools, the performance of the alternative gRNA design tool optimized for CRISPRi in eukaryotes when applied to bacteria was far from satisfying, questioning the robustness of prediction algorithms across organisms. In addition, the CRISPR-Cas systems exhibit diverse mechanisms albeit with some similarities. The captured predictive patterns from one dataset thereby are at risk of poor generalization when applied across organisms and CRISPR-Cas techniques. To fill the gap, the machine learning approach I present here for CRISPRi could serve as a blueprint for the effective development of prediction algorithms for specific organisms or CRISPR-Cas systems of interest. The explicit workflow includes three principle steps: 1) accommodating the feature set for the CRISPR-Cas system or technique; 2) optimizing a machine learning model using automated machine learning; 3) explaining the model using interpretable AI. To illustrate the applicability of the workflow and diversity of results when applied across different bacteria and CRISPR-Cas systems, I have applied this workflow to analyze three distinct CRISPR-Cas genome-wide screens. From the CRISPR base editor essentiality screen in E. coli, I have determined the PAM preference and sequence context in the editing window for efficient editing, such as A at the 2nd position of PAM, A/TT/TG downstream of PAM, and TC at the 4th to 5th position of gRNAs. From the CRISPR-Cas13a screen in E. coli, in addition to the strong correlation with the guide depletion, the target expression level is the strongest predictor in the model, supporting it as a main determinant of the activation of Cas13-induced immunity and better characterizing the CRISPR-Cas13 system. From the CRISPR-Cas12a screen in Klebsiella pneumoniae, I have extracted the design rules for robust antimicrobial activity across K. pneumoniae strains and provided a predictive algorithm for gRNA design, facilitating CRISPR-Cas12a as an alternative technique to tackle antibiotic resistance. Overall, this thesis presents an accurate prediction algorithm for CRISPRi guide efficiency in bacteria, providing insights into the determinants of efficient silencing and guide designs. The systematic exploration has led to a robust machine learning approach for effective model development in other bacteria and CRISPR-Cas systems. Applying the approach in the analysis of independent CRISPR-Cas screens not only sheds light on the design rules but also the mechanisms of the CRISPR-Cas systems. Together, I demonstrate that applied machine learning paves the way to a deeper understanding and a broader application of CRISPR-Cas systems.}, subject = {Maschinelles Lernen}, language = {en} } @phdthesis{Hartmann2024, author = {Hartmann, Oliver}, title = {Development of somatic modified mouse models of Non-Small cell lung cancer}, doi = {10.25972/OPUS-36340}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-363401}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {In 2020, cancer was the leading cause of death worldwide, accounting for nearly 10 million deaths. Lung cancer was the most common cancer, with 2.21 million cases per year in both sexes. This non-homogeneous disease is further subdivided into small cell lung cancer (SCLC, 15\%) and non-small cell lung cancer (NSCLC, 85\%). By 2023, the American Cancer Society estimates that NSCLC will account for 13\% of all new cancer cases and 21\% of all estimated cancer deaths. In recent years, the treatment of patients with NSCLC has improved with the development of new therapeutic interventions and the advent of targeted and personalised therapies. However, these advances have only marginally improved the five-year survival rate, which remains alarmingly low for patients with NSCLC. This observation highlights the importance of having more appropriate experimental and preclinical models to recapitulate, identify and test novel susceptibilities in NSCLC. In recent years, the Trp53fl/fl KRaslsl-G12D/wt mouse model developed by Tuveson, Jacks and Berns has been the main in vivo model used to study NSCLC. This model mimics ADC and SCC to a certain extent. However, it is limited in its ability to reflect the genetic complexity of NSCLC. In this work, we use CRISPR/Cas9 genome editing with targeted mutagenesis and gene deletions to recapitulate the conditional model. By comparing the Trp53fl/fl KRaslsl- G12D/wt with the CRISPR-mediated Trp53mut KRasG12D, we demonstrated that both showed no differences in histopathological features, morphology, and marker expression. Furthermore, next-generation sequencing revealed a very high similarity in their transcriptional profile. Adeno-associated virus-mediated tumour induction and the modular design of the viral vector allow us to introduce additional mutations in a timely manner. CRISPR-mediated mutation of commonly mutated tumour suppressors in NSCLC reliably recapitulated the phenotypes described in patients in the animal model. Lastly, the dual viral approach could induce the formation of lung tumours not only in constitutive Cas9 expressing animals, but also in wildtype animals. Thus, the implementation of CRISPR genome editing can rapidly advance the repertoire of in vivo models for NSCLC research. Furthermore, it can reduce the necessity of extensive breeding.}, subject = {CRISPR/Cas-Methode}, language = {en} } @article{Gohla2019, author = {Gohla, Antje}, title = {Do metabolic HAD phosphatases moonlight as protein phosphatases?}, series = {BBA - Molecular Cell Research}, volume = {1866}, journal = {BBA - Molecular Cell Research}, doi = {10.1016/j.bbamcr.2018.07.007}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-233168}, pages = {153-166}, year = {2019}, abstract = {Mammalian haloacid dehalogenase (HAD)-type phosphatases have evolved to dephosphorylate a wide range of small metabolites, but can also target macromolecules such as serine/threonine, tyrosine-, and histidine-phosphorylated proteins. To accomplish these tasks, HAD phosphatases are equipped with cap domains that control access to the active site and provide substrate specificity determinants. A number of capped HAD phosphatases impact protein phosphorylation, although structural data are consistent with small metabolite substrates rather than protein substrates. This review discusses the structures, functions and disease implications of the three closely related, capped HAD phosphatases pyridoxal phosphatase (PDXP or chronophin), phosphoglycolate phosphatase (PGP, also termed AUM or glycerol phosphatase) and phospholysine phosphohistidine inorganic pyrophosphate phosphatase (LHPP or HDHD2B). Evidence in support of small metabolite and protein phosphatase activity is discussed in the context of the diversity of their biological functions.}, language = {en} } @article{CasarottoTurcoComanduccietal.2019, author = {Casarotto, Silvia and Turco, Francesco and Comanducci, Angela and Perretti, Alessio and Marotta, Giorgio and Pezzoli, Gianni and Rosanova, Mario and Isaias, Ioannis U.}, title = {Excitability of the supplementary motor area in Parkinson's disease depends on subcortical damage}, series = {Brain Stimulation}, volume = {12}, journal = {Brain Stimulation}, doi = {10.1016/j.brs.2018.10.011}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-222261}, pages = {152-160}, year = {2019}, abstract = {Background Cortical dysfunctioning significantly contributes to the pathogenesis of motor symptoms in Parkinson's disease (PD). Objective We aimed at testing whether an acute levodopa administration has measurable and specific cortical effects possibly related to striatal dopaminergic deficit. Methods In thirteen PD patients, we measured the electroencephalographic responses to transcranial magnetic stimulation (TMS/EEG) of the supplementary motor area and superior parietal lobule (n = 8) before and after an acute intake of levodopa. We also performed a single-photon emission computed tomography and [123I]N-ω-fluoropropyl-2β-carbomethoxy-3β-(4-iodophenyl)nortropane to identify the more affected and the less affected brain side in each patient, according to the dopaminergic innervation loss of the putamen. Cortical excitability changes before and after an acute intake of levodopa were computed and compared between the more and the less affected brain side at the single-patient as well as at the group level. Results We found that levodopa intake induces a significant increase (P < 0.01) of cortical excitability nearby the supplementary motor area in the more affected brain side, greater (P < 0.025) than in the less affected brain side. Notably, cortical excitability changes nearby the superior parietal lobule were not statistically significant. Conclusions These results strengthen the idea that dysfunction of specific cortico-subcortical circuits may contribute to pathophysiology of PD symptoms. Most important, they support the use of navigated TMS/EEG as a non-invasive tool to better understand the pathophysiology of PD.}, language = {en} } @article{FazeliStetterLisacketal.2018, author = {Fazeli, Gholamreza and Stetter, Maurice and Lisack, Jaime N. and Wehman, Ann M.}, title = {C. elegans Blastomeres Clear the Corpse of the Second Polar Body by LC3-Associated Phagocytosis}, series = {Cell Reports}, volume = {23}, journal = {Cell Reports}, doi = {10.1016/j.celrep.2018.04.043}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-227651}, pages = {2070-2082}, year = {2018}, abstract = {To understand how undifferentiated pluripotent cells cope with cell corpses, we examined the clearance of polar bodies born during female meiosis. We found that polar bodies lose membrane integrity and expose phosphatidylserine in Caenorhabditis elegans. Polar body signaling recruits engulfment receptors to the plasma membrane of embryonic blastomeres using the PI3K VPS-34, RAB-5 GTPase and the sorting nexin SNX-6. The second polar body is then phagocytosed using receptor-mediated engulfment pathways dependent on the Rac1 ortholog CED-10 but undergoes non-apoptotic programmed cell death independent of engulfment. RAB-7 GTPase is required for lysosome recruitment to the polar body phagosome, while LC3 lipidation is required for degradation of the corpse membrane after lysosome fusion. The polar body phagolysosome vesiculates in an mTOR- and ARL-8-dependent manner, which assists its timely degradation. Thus, we established a genetic model to study clearance by LC3-associated phagocytosis and reveal insights into the mechanisms of phagosome maturation and degradation.}, language = {en} } @article{EisenhoferPeitzschKadenetal.2019, author = {Eisenhofer, Graeme and Peitzsch, Mirko and Kaden, Denise and Langton, Katharina and Mangelis, Anastasios and Pamporaki, Christina and Masjkur, Jimmy and Geroula, Aikaterini and Kurlbaum, Max and Deutschbein, Timo and Beuschlein, Felix and Prejbisz, Aleksander and Bornstein, Stefan R. and Lenders, Jacques W. M.}, title = {Reference intervals for LC-MS/MS measurements of plasma free, urinary free and urinary acid-hydrolyzed deconjugated normetanephrine, metanephrine and methoxytyramine}, series = {Clinica Chimica Acta}, volume = {490}, journal = {Clinica Chimica Acta}, doi = {10.1016/j.cca.2018.12.019}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-226598}, pages = {46-54}, year = {2019}, abstract = {Background Plasma or urinary metanephrines are recommended for screening of pheochromocytomas and paragangliomas (PPGLs). Measurements of urinary free rather than deconjugated metanephrines and additional measurements of methoxytyramine represent other developments. For all measurements there is need for reference intervals. Methods Plasma free, urinary free and urinary deconjugated O-methylated catecholamine metabolites were measured by LC-MS/MS in specimens from 590 hypertensives and normotensives. Reference intervals were optimized using data from 2,056 patients tested for PPGLs. Results Multivariate analyses, correcting for age and body surface area, indicated higher plasma and urinary metanephrine in males than females and sex differences in urinary normetanephrine and free methoxytyramine that largely reflected body size variation. There were positive associations of age with plasma metabolites, but negative relationships with urinary free metanephrine and methoxytyramine. Plasma and urinary normetanephrine were higher in hypertensives than normotensives, but differences were small. Optimization of reference intervals using the data from patients tested for PPGLs indicated that age was the most important consideration for plasma normetanephrine and sex most practical for urinary metabolites. Conclusion This study clarifies impacts of demographic and anthropometric variables on catecholamine metabolites, verifies use of age-specific reference intervals for plasma normetanephrine and establishes sex-specific reference intervals for urinary metabolites.}, language = {en} } @article{LieseSchoenvanderLindenetal.2019, author = {Liese, J. G. and Schoen, C. and van der Linden, M. and Lehmann, L. and Goettler, D. and Keller, S. and Maier, A. and Segerer, F. and Rose, M. A. and Streng, A.}, title = {Changes in the incidence and bacterial aetiology of paediatric parapneumonic pleural effusions/empyema in Germany, 2010-2017: a nationwide surveillance study}, series = {Clinical Microbiology and Infection}, volume = {25}, journal = {Clinical Microbiology and Infection}, doi = {10.1016/j.cmi.2018.10.020}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-236866}, pages = {857-864}, year = {2019}, abstract = {Objectives Parapneumonic pleural effusions/empyema (PPE/PE) are severe complications of community-acquired pneumonia. We investigated the bacterial aetiology and incidence of paediatric PPE/PE in Germany after the introduction of universal pneumococcal conjugate vaccine (PCV) immunization for infants. Methods Children <18 years of age hospitalized with pneumonia-associated PPE/PE necessitating pleural drainage or persisting >7 days were reported to the German Surveillance Unit for Rare Diseases in Childhood between October 2010 and June 2017. All bacteria detected in blood or pleural fluid (by culture/PCR) were included, with serotyping for Streptococcus pneumoniae. Results The median age of all 1447 PPE/PE patients was 5 years (interquartile range 3-10). In 488 of the 1447 children with PPE/PE (34\%), 541 bacteria (>40 species) were detected. Aerobic gram-positive cocci accounted for 469 of 541 bacteria detected (87\%); these were most frequently Streptococcus pneumoniae (41\%), Streptococcus pyogenes (19\%) and Staphylococcus aureus (6\%). Serotype 3 accounted for 45\% of 78 serotyped S. pneumoniae strains. Annual PPE/PE incidence varied between 14 (95\%CI 12-16) and 18 (95\%CI 16-21) PPE/PE per million children. Incidence of S. pneumoniae PPE/PE decreased from 3.5 (95\%CI 2.5-4.6) per million children in 2010/11 to 1.5 (95\%CI 0.9-2.4) in 2013/14 (p 0.002), followed by a re-increase to 2.2 (95\%CI 1.5-3.2) by 2016/17 (p 0.205). Conclusions In the era of widespread PCV immunization, cases of paediatric PPE/PE were still caused mainly by S. pneumoniae and, increasingly, by S. pyogenes. The re-increase in the incidence of PPE/PE overall and in S. pneumoniae-associated PPE/PE indicates ongoing changes in the bacterial aetiology and requires further surveillance.}, language = {en} }