@phdthesis{Laesker2023, author = {L{\"a}sker, Katharina}, title = {The influence of the short-chain fatty acid butyrate on "Signal transducer and activator of transcription 3" (STAT3) and selected inflammatory genes in the colon carcinoma cell line CACO-2 cultured in 2D and 3D}, doi = {10.25972/OPUS-30038}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-300389}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {A disturbance in the symbiotic mutualism between the intestinal microbiome and the human host's organism (syn. dysbiosis) accompanies the development of a variety of inflammatory and metabolic diseases that comprise the Metabolic Syndrome, chronic inflammatory gut diseases like Crohn's disease, Non-alcoholic fatty liver disease (NAFLD) and cardiovascular diseases, among others. The changed uptake and effectiveness of short chain fatty acids (SCFAs) as well as an increase of the intestinal permeability are common, interdependent disease elements in this regard. Short chain fatty acids are end-products of intestinal bacterial fermentation and affect the mucosal barrier integrity via numerous molecular mechanisms. There is evidence to suggest, that SCFAs have a modulating influence on Signal transducer and activator of transcription 3 (STAT3) in intestinal epithelial cells. STAT3 is a central gene-transcription factor in signaling pathways of proliferation and inflammation. It can be activated by growth factors and other intercellular signaling molecules like the cytokine Oncostatin M (OSM). The mode of STAT3's activation exhibits, finally, a decisive influence on the immunological balance at the intestinal mucosa. Therefore, the posttranslational modification of STAT3 under the influence of SCFAs is likely to be a very important factor within the development and -progression of dysbiosis-associated diseases. In this study, a clear positive in vitro-effect of the short chain fatty acid butyrate on the posttranslational serine727-phosphorylation of STAT3 and its total protein amount in the human adenocarcinoma cell line CACO2 is verified. Moreover, an increased gene expression of the OSM-receptor subunit OSMRβ can be observed after butyrate incubation. Histone deacetylase inhibition is shown to have a predominant role in these effects. Furthermore, a subsequent p38 MAPK-activation by Butyrate is found to be a key molecular mechanism regarding the STAT3-phosphorylation at serine727-residues. To consider the portion of butyrate receptor signaling in this context in future assays, a CACO-2 cell 3D-culture model is introduced in which an improvement of the GPR109A-receptor expression in CACO-2 cells is accomplished.}, subject = {Butyrate }, language = {en} } @phdthesis{Aigner2023, author = {Aigner, Max}, title = {Establishing successful protocols and imaging pipelines for Expansion Microscopy in murine blood platelets}, doi = {10.25972/OPUS-30900}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-309003}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {Platelets play an important role in the body, since they are part of the hemostasis system, preventing and stopping blood loss. Nevertheless, when platelet or coagulation system function are impaired, uncontrolled bleedings but also irreversible vessel occlusion followed by ischemic tissue damage can occur. Therefore, understanding platelet function and activation, mechanisms which are controlled by a variety of platelet membrane receptors and other factors is important to advance out knowledge of hemostasis and platelet malfunction. For a complete picture of platelet function and their modulating behavior it is desired to be able to quantify receptor distributions and interactions of these densely packed molecular ensembles in the membrane. This challenges scientists for several reasons. Most importantly, platelets are microscopically small objects, challenging the spatial resolution of conventional light microscopy. Moreover, platelet receptors are highly abundant on the membrane so even super-resolution microscopy struggles with quantitative receptor imaging on platelets. With Expansion microscopy (ExM), a new super-resolution technique was introduced, allowing resolutions to achieve super-resolution without using a super-resolution microscope, but by combining a conventional confocal microscopy with a highly processed sample that has been expanded physically. In this doctoral thesis, I evaluated the potential of this technique for super-resolution platelet imaging by optimizing the sample preparation process and establishing an imaging and image processing pipeline for dual-color 3D images of different membrane receptors. The analysis of receptor colocalization using ExM demonstrated a clear superiority compared to conventional microscopy. Furthermore, I identified a library of fluorescently labeled antibodies against different platelet receptors compatible with ExM and showed the possibility of staining membrane receptors and parts of the cytoskeleton at the same time.}, subject = {Mikroskopie}, language = {en} } @phdthesis{Heider2023, author = {Heider, Melanie}, title = {Detektionsrate der \(^{68}\)Ga-PSMA-PET/CT bei Patienten mit Rezidiv eines Prostatakarzinoms und Androgendeprivationstherapie}, doi = {10.25972/OPUS-30612}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-306123}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {Die Detektion des Prostataspezifischen Membranantigens (PSMA) mittels kombinierter Positronenemissions- und Computertomographie (PET/CT) ist ein etabliertes diagnostisches Verfahren bei Patienten mit Prostatakarzinom. Hierbei ist bislang unklar, ob und wie eine bereits eingeleitete Androgendeprivationstherapie (ADT) die diagnostische Genauigkeit der PSMA-PET/CT beeinflusst. Ziel dieser Arbeit war es, die Detektionsrate der PSMA-PET/CT mit 68Ga-PSMA I\&T unter ADT in Abh{\"a}ngigkeit des PSA-Wertes zu evaluieren und mit einer Kontrollgruppe ohne ADT zu vergleichen. In dieser retrospektiven Studie wurden Daten von Patienten mit biochemischem Rezidiv nach radikaler Prostatektomie analysiert, welche zwischen 2014 und 2018 eine PSMA-PET/CT am Universit{\"a}tsklinikum W{\"u}rzburg erhalten haben. Mittels Propensity Score Matching wurde f{\"u}r die Patienten mit ADT innerhalb der letzten 6 Monate vor Durchf{\"u}hrung der PSMA-PET/CT eine Kontrollgruppe ohne ADT erstellt. Die Patienten mit ADT (n=62) wiesen eine signifikant h{\"o}here Detektionsrate auf als die Patienten ohne ADT (n=62). Die Traceranreicherung unterschied sich nicht signifikant in beiden Gruppen. Dagegen wiesen die Patienten mit ADT jedoch eine signifikant h{\"o}here Tumorlast auf und hatten h{\"a}ufiger Knochen- und Organmetastasen, sodass als Ursache f{\"u}r die h{\"o}here Detektionsrate der PSMA-PET/CT bei Patienten mit ADT ein fortgeschritteneres Tumorstadium angenommen wurde. Die Detektionsrate war bei den Patienten mit ADT auch bei niedrigen PSA-Werten hoch. Es scheint daher nicht erforderlich zu sein, eine bestehende ADT vor Durchf{\"u}hrung der PSMA-PET/CT im biochemischen Rezidiv abzusetzen und damit das Risiko einer Krankheitsprogression einzugehen. Die Korrelation des PSA-Wertes mit der Tumorlast in der PSMA-PET/CT war bei Patienten mit ADT geringer ausgepr{\"a}gt als bei Patienten ohne ADT. Patienten unter ADT k{\"o}nnten daher von einer regelm{\"a}ßigen Durchf{\"u}hrung der PSMA-PET/CT zur {\"U}berwachung der Krankheitsprogression profitieren. Hier bleibt allerdings eine Kosten-Nutzen-Analyse abzuwarten, da dies deutlich aufwendiger und teurer ist als die Bestimmung des PSA-Wertes.}, subject = {Positronen-Emissions-Tomografie}, language = {de} } @article{ParisiLehnerSchraderetal.2023, author = {Parisi, Sandra and Lehner, Nina and Schrader, Hanna and Kierer, Leonard and Fleischer, Anna and Miljukov, Olga and Borgulya, Gabor and R{\"u}ter, Gernot and Viniol, Annika and G{\´a}gyor, Ildik{\´o}}, title = {Experiencing COVID-19, home isolation and primary health care: A mixed-methods study}, series = {Frontiers in Public Health}, volume = {10}, journal = {Frontiers in Public Health}, issn = {2296-2565}, doi = {10.3389/fpubh.2022.1023431}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-301498}, year = {2023}, abstract = {Objectives Although the vast majority of COVID-19 cases are treated in primary care, patients' experiences during home isolation have been little studied. This study aimed to explore the experiences of patients with acute COVID-19 and to identify challenges after the initial adaptation of the German health system to the pandemic (after first infection wave from February to June 2020). Methods A mixed-method convergent design was used to gain a holistic insight into patients experience. The study consisted of a cross-sectional survey, open survey answers and semi-structured telephone interviews. Descriptive analysis was performed on quantitative survey answers. Between group differences were calculated to explore changes after the first infection wave. Qualitative thematic analysis was conducted on open survey answers and interviews. The results were then compared within a triangulation protocol. Results A total of 1100 participants from all German states were recruited by 145 general practitioners from August 2020 to April 2021, 42 additionally took part in qualitative interviews. Disease onset varied from February 2020 to April 2021. After the first infection wave, more participants were tested positive during the acute disease (88.8\%; 95.2\%; P < 0.001). Waiting times for tests (mean 4.5 days, SD 4.1; 2.7days, SD 2.6, P < 0.001) and test results (mean 2.4 days, SD 1.9; 1.8 days, SD 1.3, P < 0.001) decreased. Qualitative results indicated that the availability of repeated testing and antigen tests reduced insecurities, transmission and related guilt. Although personal consultations at general practices increased (6.8\%; 15.5\%, P < 0.001), telephone consultation remained the main mode of consultation (78.5\%) and video remained insignificant (1.9\%). The course of disease, the living situation and social surroundings during isolation, access to health care, personal resilience, spirituality and feelings of guilt and worries emerged as themes influencing the illness experience. Challenges were contact management and adequate provision of care during home isolation. A constant contact person within the health system helped against feelings of care deprivation, uncertainty and fear. Conclusions Our study highlights that home isolation of individuals with COVID-19 requires a holistic approach that considers all aspects of patient care and effective coordination between different care providers.}, language = {en} } @phdthesis{Hennlein2023, author = {Hennlein, Luisa}, title = {Plastin 3 rescues defective cell surface translocation and activation of TrkB in mouse models for spinal muscular atrophy}, publisher = {Journal of Cell Biology}, doi = {10.25972/OPUS-29879}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-298793}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {Spinal muscular atrophy (SMA) is a genetic pediatric condition that affects lower motoneurons leading to their degeneration and muscle weakness. It is caused by homozygous loss or mutations in the Survival Motor Neuron 1 (SMN1) gene; however, the pathomechanism leading to motoneuron degeneration is not fully resolved. Cultured embryonic SMA motoneurons display axon elongation and differentiation defects accompanied by collapsed growth cones with a disturbed actin cytoskeleton. Intriguingly, motoneurons cultured from mice deficient for the Tropomyosin-kinase receptor B (TrkB), exhibit similar pathological features. Thus, the question arises whether SMA motoneurons suffer from defective Brain-derived neurotrophic factor (BDNF)/TrkB signaling and whether there is a link to the disturbed actin cytoskeleton. In the recent years, modifier genes such as Plastin 3 (PLS3) were shown to beneficially interfere with SMA pathology. Nevertheless, the mechanism of how the actin-bundler PLS3 counteracts SMN deficiency is not well understood. In this study, we investigated TrkB localization and its activation in cultured SMA motoneurons and neuromuscular junctions (NMJs). While TrkB levels are only mildly affected locally in axon terminals, BDNF-mediated TrkB phosphorylation was massively disturbed. The activity-dependent TrkB translocation to the cell surface and its activation via BDNF were shown to be Pls3-dependent processes, that can be abolished by knockdown of Pls3. In contrast, PLS3 overexpression in SMA motoneurons rescued the defects on morphological and functional level. In particular, the relocation of TrkB to the cell surface after BDNF-induced internalization is disturbed in SMA, which is based on an actin-dependent TrkB translocation defect from intracellular stores. Lastly, AAV9-mediated PLS3 overexpression in vivo in neonatal SMA mice provided further evidence for the capacity of PLS3 to modulate actin dynamics necessary for accurate BDNF/TrkB signaling. In conclusion, we provide a novel role for PLS3 in mediating proper alignment of transmembrane proteins as prerequisite for their appropriate functioning. Hence, PLS3 is required for a key process indispensable for the development and function of motoneurons even beyond the context of SMA.}, subject = {Spinale Muskelatrophie}, language = {en} } @phdthesis{Jaud2023, author = {Jaud, Tobias Armin}, title = {Application based personalized food choices and health sustainment: scientific background and investigation of biomarkers in human tissue specimens}, doi = {10.25972/OPUS-29864}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-298646}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {Dietary fatty acids serve as objective biomarkers for the estimation of habitual diet mainly because biomarkers are free of memory bias or inaccuracies of food databases. The aim of the present work encompassed the implementation of a gas chromatographical method coupled with a mass spectrometrical and flame-ionization detector for analysis of fatty acid biomarkers in human biospecimens, their analytical determination and statistical evaluation in two different study populations and different biospecimens as well as the elaboration of adverse reactions to food ingredients with special focus on food allergies and food intolerances in the context of a possible implementation into an application for consumer health. The first aim was the identification of potential influence of fatty acid biomarkers on desaturase and elongase indexes (Δ9DI, Δ6DI, Δ5DI and ELOVLI5), which are factors in type 2 diabetes risk, in breast adipose tissue from healthy women. Influence of further variables on respective indexes was also investigated. 40 samples were investigated and potential variables were either collected by questionnaire or determined. Principle component analysis was applied for fatty acid biomarkers (PCdiet1, PCdiet2 and PCdiet3 representative for the dietary intake of vegetable oils/nuts, fish and partially hydrogenated vegetable oils), endogenous estrogens (PCE1) and oxysterols (PCOxy1). Multiple linear regression models were applied. Δ9DI and Δ6DI were influenced non-significantly and significantly negatively by PCdiet2 supporting a putative beneficial effect of vegetable oils and nuts on type 2 diabetes risk factors. ELOVLI5 and Δ5DI were influenced significantly and non-significantly positively by PCdiet1 supporting a putative beneficial effect of fish consumption on type 2 diabetes risk factors. On the other hand, PCdiet1 also significantly and non-significantly positively influenced Δ9DI and Δ6DI supporting a putative adverse effect of fish biomarkers on type 2 diabetes risk factors. The opposing influences of PCdiet1 suggesting an ambivalent role of dietary intake of fish on investigated indexes. Δ6DI was significantly positively influenced by PCdiet3 and number of pregnancies supporting a putative adverse effect of partially hydrogenated vegetable oils and pregnancies on type 2 diabetes risk factors. Lifestyle factors like smoking significantly and non-significantly influenced Δ9DI and Δ6DI putatively adversely. Δ5DI was influenced significantly positively by estrogen active drugs suggesting a putative beneficial effect on type 2 diabetes risk factors. It must be considered that a variation coefficient of up to 0.44 only explained 44\% of variance of the respective indexes, suggesting other influencing factors might play a role. The second aim was the implementation of a gas chromatographical method coupled with a mass spectrometrical and flame-ionization detector for analysis of fatty acid biomarkers in human biospecimens. The method was optimized for separation and detection of 40 fatty acids. Mean recovery for tridecanoic acid was x(tridecanoic acid) = 90.51\% and for nonadecanoic acid x(nonadecanoic acid) = 96.21\%. Thus, there was no significant loss of fatty acids with shorter and longer carbon chains over the extraction process to be expected. Limit of detections were calculated in adipose tissue samples and ranged from 0.007 to 0.077\% of the proportion of the respective fatty acid to total fatty acids. The third aim was the investigation if differentiation between breast glandular and adipose tissue had a relevant impact on the analysis of dietary fatty acid biomarkers or if contamination of breast glandular with breast adipose tissue and vice versa was neglectable for the analysis of dietary fatty acid biomarkers. No statistical significant differences were observed for all investigated fatty acid biomarkers (pentadecanoic-, heptadecanoic-, trans palmitoleic-, eicosapentaenoic-, docosahexaenoic-, linoleic and α-linolenic acid) between breast glandular and adipose tissue. Thus, differentiation between breast glandular and adipose tissue seems not to be necessary for the analysis of fatty acids serving as biomarkers for the intake of specific food groups. Potential influence of mixed breast tissue on fatty acid biomarkers analysis seems to be neglectable. The fourth aim was the determination of fatty acid biomarkers in adipose tissue in another study population from healthy participants. 27 adipose tissue samples were analyzed. Milk and ruminant fat biomarkers exhibited proportions of 0.47\% for pentadecanoic acid, 0.34\% for heptadecanoic acid and 0.25\% for trans palmitoleic acid. Fish fatty acid biomarkers revealed proportions of 0.034\% for eicosapentaenoic acid and 0.061\% for docosahexaenoic acid. The mean proportion of vegetable oils and nuts biomarkers were 9.58\% for linoleic acid and 0.48\% for α-linolenic acid in all adipose tissues. Principle component analysis was applied for the fatty acid biomarkers to provide objective markers of habitual diet for this study population. PCdiet1 was mainly characterized by pentadecanoic acid, heptadecanoic acid and trans palmitoleic acid and therefore served as a principle component for the dietary intake of milk and ruminant fat. PCdiet2 and PCdiet3 only exhibited pattern for ω3 and ω6 fatty acids but not for dietary intake of specific food groups and could therefore not used as objective marker. PCdiet1, 2 and 3 explained 82.76\% of variance. The last aim of this thesis was the elaboration of adverse reactions to food ingredients with special focus on food allergies and food intolerances in the context of a possible implementation into an application for consumer health. Scientific information on adverse reactions to food ingredients and trigger substances was provided in this thesis and possible implementation strategies were evaluated. For food allergens, which have regulatory requirements in the context of labelling, a strategy was elaborated, where it is necessary to provide information on the list of ingredients, the nexus 'contain' and the respective food allergen as well as information on the name of the product. For food intolerances, which do not have regulatory requirements, limits were shown in the context of the application. If the elaborated food intolerances shall be implemented into the application, a professional dietary concept has to be developed for every food intolerance because of the complexity of the implementation.}, subject = {Lebensmittelchemie}, language = {en} } @phdthesis{Jung2023, author = {Jung, Johannes}, title = {Wechselwirkungen zwischen Kantenzust{\"a}nden auf dem topologisch kristallinen Isolator Pb\(_{1-x}\)Sn\(_x\)Se}, doi = {10.25972/OPUS-29861}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-298616}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {Einerseits besteht die einfachste M{\"o}glichkeit zum Ladungs- und Informationstransport zwischen zwei Punkten in deren direkter Verbindung durch eindimensionale Kan{\"a}le. Andererseits besitzen topologische Materialien exotische und {\"a}ußerst vorteilhafte Eigenschaften, weshalb es nahe liegt, dass schon bald neue Anwendungen aus ihnen realisiert werden. Wenn diese beiden Entwicklungen zusammenkommen, dann ist ein grundlegendes Verst{\"a}ndnis von Quanteninterferenz oder Hybridisierungseffekten in eindimensionalen, topologischen Kan{\"a}len von fundamentaler Wichtigkeit. Deshalb werden in der vorliegenden Arbeit Wechselwirkungen von eindimensionalen, topologisch gesch{\"u}tzten Kantenzust{\"a}nden, die an ungeradzahligen Stufenkanten auf der (001)-Oberfl{\"a}che von Pb1-xSnxSe auftreten, untersucht. Aufgrund der lateralen Lokalisierung auf wenige Nanometer um eine Stufenkante herum und der Notwendigkeit zwischen gerad- und ungeradzahligen Stufenkantenh{\"o}hen zu unterscheiden, bieten sich die Rastertunnelmikroskopie und -spektroskopie als Methoden an. Die neu entdeckten Kopplungs- bzw. Wechselwirkungseffekte zwischen benachbarten Kantenzust{\"a}nden treten auf, sobald der Stufe zu Stufe Abstand einen kritischen Wert von dkri ≈ 25nm unterschreitet. Dieses Kriterium kann durch verschiedene r{\"a}umliche Anordnungen von Stufenkanten erf{\"u}llt werden. Infolgedessen werden sich kreuzende, parallel verlaufende und zusammenlaufende Stufenkanten genauer untersucht. Bei letzteren ver{\"a}ndert sich entlang der Struktur kontinuierlich der Abstand und damit die Kopplungsst{\"a}rke zwischen den beiden Randkan{\"a}len. Infolgedessen wurden drei Koppelungsregime identifiziert. (I) Ausgehend von einer schwachen Wechselwirkung zeigt der f{\"u}r die Kantenzust{\"a}nde charakteristische Peak im Spektrum zun{\"a}chst eine Verbreiterung und Verminderung der Intensit{\"a}t. (II) Mit weiter zunehmender Wechselwirkung beginnt sich der Zustand in zwei Peaks aufzuspalten, sodass ab dkri ≈ 15nm an beiden Stufenkanten durchgehen eine Doppelpeak zu beobachten ist . Mit weiter abnehmendem Abstand erreicht die Aufspaltung Werte von einigen 10 meV, w{\"a}hrend sich die Intensit{\"a}t weiter reduziert. (III) Sobald zwei Stufenkanten weniger als etwa 5nm voneinander getrennt sind, konvergieren aufgrund der schwindenden Intensit{\"a}t und des sinkenden energetischen Abstands der beiden Peaks zu den van Hove Singularit{\"a}ten die Spektren an den Stufenkanten gegen das Spektrum {\"u}ber einer Terrasse. i Die Aufspaltung verl{\"a}uft in den Bereichen I und II asymmetrisch, d. h. ein Peak verbleibt ungef{\"a}hr bei der Ausgangsenergie, w{\"a}hrend der andere mit zunehmender Kopplung immer weiter weg schiebt. Bez{\"u}glich der Asymmetrie kann kein Unterschied festgestellt werden, ob die zusammenlaufenden Stufenkanten eine Insel oder Fehlstelleninsel bilden oder ob die Stufenkanten sogar g{\"a}nzlich parallel verlaufen. Es zeigt sich keine Pr{\"a}ferenz, ob zun{\"a}chst der niederenergetische oder der hochenergetische Peak schiebt. Erst im Regime starker Kopplung (III) kann beobachtet werden, dass beide Peaks die Ausgangsenergie deutlich verlassen. Im Gegensatz dazu kann bei sich kreuzenden Stufen ein erheblicher Einfluss der Geometrie, in Form des eingeschlossenen Winkels, auf das Spektrum beobachtet werden. Unabh{\"a}ngig vom Winkel existiert am Kreuzungspunkt selbst kein Kantenzustand mehr. Die Zust{\"a}nde an den vier Stufen beginnen, abh{\"a}ngig vom Winkel, etwa 10-15nm vor dem Kreuzungspunkt abzuklingen. {\"U}berraschenderweise zeigt sich dabei, dass im Fall rechtwinkliger Stufen gar keine Aufspaltung zu beobachten ist, w{\"a}hrend bei allen anderen Winkeln ein Doppelpeak festgestellt werden kann. Diese Entdeckung deutet auf Orthogonalit{\"a}t bez{\"u}glich einer Quantenzahl bei den beteiligten Kantenzust{\"a}nde hin. Neben einer nur theoretisch vorhergesagten Spinpolarisation kann dieser Effekt auch von dem orbitalem Charakter der beteiligten Dirac-Kegel verursacht sein. Da der topologische Schutz in Pb1-xSnxSe durch Kristallsymmetrien garantiert ist, wird als letzter intrinsischer Effekt der Einfluss von eindimensionalen Defekten auf die Kantenzust{\"a}nde untersucht. Ber{\"u}cksichtigt werden dabei ein nicht n{\"a}her klassifizierbarer, oberfl{\"a}chennaher Defekt und Schraubversetzungen. In beiden F{\"a}llen kann ebenfalls eine Aufspaltung des Kantenzustands in einen Doppelpeak gezeigt werden. Im zweiten Teil dieser Arbeit werden die Grundlagen f{\"u}r eine Wiederverwendung von (Pb,Sn)Se-Oberfl{\"a}chen bei zuk{\"u}nftige Experimenten mit (magnetischen) Adatomen geschaffen. Durch Kombination von Inoenzerst{\"a}ubung und Tempern wird dabei nicht nur eine gereinigte Oberfl{\"a}che erzeugt, sondern es kann auch das Ferminiveau gezielt erh{\"o}ht oder gesenkt werden. Dieser Effekt beruht auf eine Modifikation der Sn- Konzentration und der von ihr kontrollierten Anzahl an Defektelektronen. Als letztes sind erste Messungen an Cu- und Fe-dotierte Proben gezeigt. Durch die Adatome tritt eine n-Dotierung auf, welche den Dirac-Punkt des Systems in Richtung des Ferminiveaus verschiebt. Sobald er dieses erreicht hat kommt es zu Wechselwirkungsph{\"a}nomenen an freistehenden Stufenkanten. Dies f{\"u}hrt zu einer Doppelpeakstruktur mit einer feinen Aufspaltung von wenigen meV. Das Ph{\"a}nomen ist auf ein schmales Energiefenster beschr{\"a}nkt, bei dem die Lage des Dirac-Punkts nur etwa 5 meV (in beide Richtungen) von der des Ferminiveaus abweichen darf.}, subject = {Topologischer Isolator}, language = {de} } @phdthesis{Forster2023, author = {Forster, Leonard}, title = {Hyaluronic acid based Bioinks for Biofabrication of Mesenchymal Stem Cells}, doi = {10.25972/OPUS-29860}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-298603}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {As a major component of the articular cartilage extracellular matrix, hyaluronic acid is a widely used biomaterial in regenerative medicine and tissue engineering. According to its well-known interaction with multiple chondrocyte surface receptors which positively affects many cellular pathways, some approaches by combining mesenchymal stem cells and hyaluronic acid-based hydrogels are already driven in the field of cartilage regeneration and fat tissue. Nevertheless, a still remaining major problem is the development of the ideal matrix for this purpose. To generate a hydrogel for the use as a matrix, hyaluronic acid must be chemically modified, either derivatized or crosslinked and the resulting hydrogel is mostly shaped by the mold it is casted in whereas the stem cells are embedded during or after the gelation procedure which does not allow for the generation of zonal hierarchies, cell density or material gradients. This thesis focuses on the synthesis of different hyaluronic acid derivatives and poly(ethylene glycol) crosslinkers and the development of different hydrogel and bioink compositions that allow for adjustment of the printability, integration of growth factors, but also for the material and biological hydrogel, respectively bioink properties.}, language = {en} } @phdthesis{Fasemore2023, author = {Fasemore, Akinyemi Mandela}, title = {Genomic and internet based analysis of \(Coxiella\) \(burnetii\)}, doi = {10.25972/OPUS-29663}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-296639}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {Coxiella burnetii, a Gram negative obligate intracellular bacterium, is the causative agent of Q fever. It has a world wide distribution and has been documented to be capable of causing infections in several domestic animals, livestock species, and human beings. Outbreaks of Q fever are still being observed in livestock across animal farms in Europe, and primary transmission to humans still oc- curs especially in animal handlers. Public health authorities in some countries like Germany are required by law to report human acute cases denoting the significance of the challenge posed by C. burnetii to public health. In this thesis, I have developed a platform alongside methods to address the challenges of genomic analyses of C. burnetii for typing purposes. Identification of C. burnetii isolates is an important task in the laboratory as well as in the clinics and genotyping is a reliable method to identify and characterize known and novel isolates. Therefore, I designed and implemented several methods to facilitate the genotyping analyses of C. burnetii genomes in silico via a web platform. As genotyping is a data intensive process, I also included additional features such as visualization methods and databases for interpretation and storage of obtained results. I also developed a method to profile the resistome of C. burnetii isolates using a machine learning approach. Data about antibiotic resistance in C. burnetii are scarce majorly due to its lifestyle and the difficulty of cultivation in laboratory media. Alternative methods that rely on homology identification of resistance genes are also inefficient in C. burnetii, hence, I opted for a novel approach that has been shown to be promising in other bacteria species. The applied method relied on an artificial neural network as well as amino acid composition of position specific scoring matrix profile for feature extraction. The resulting model achieved an accuracy of ≈ 0.96 on test data and the overall performance was significantly higher in comparison to existing models. Finally, I analyzed two new C. burnetii isolates obtained from an outbreak in Germany, I compared the genome to the RSA 493 reference isolate and found extensive deletions across the genome landscape. This work has provided a new digital infrastructure to analyze and character- ize C. burnetii genomes that was not in existence before and it has also made a significant contribution to the existing information about antibiotic resistance genes in C. burnetii.}, language = {en} } @phdthesis{Vogg2023, author = {Vogg, Nora Johanna}, title = {Mass spectrometry-based quantification of steroids for the diagnostic workup of adrenal tumors}, doi = {10.25972/OPUS-29343}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-293438}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {Tumors of the adrenal gland belong to the most frequent neoplasms in humans with a prevalence of 3-10 \% in adults. The aim of the diagnostic workup is the identification of potentially hormone-secreting and / or malignant tumors, because most of these tumors will require surgical resection. Malignant adrenocortical carcinomas (ACC) are very rare and associated with a poor prognosis in advanced stages, therefore, an early and accurate diagnosis is crucial. Within this thesis, two liquid chromatography tandem mass spectrometry (LC-MS/MS) methods for the quantification of steroids in different biomaterials were developed to improve the diagnostic workup of adrenal tumors. First, an LC-MS/MS method for the simultaneous quantification of cortisol and dexamethasone in serum samples after dexamethasone suppression test (DST) was developed, validated, and applied to 400 clinical samples. Newly established method-specific threshold concentrations for cortisol and dexamethasone increased DST specificity from 67.5 \% to 92.4 \% while preserving 100 \% sensitivity. Second, an LC-MS/MS method for the quantification of eleven urinary steroids was developed and validated to improve the differentiation between ACC and adrenocortical adenomas (ACA). A decision tree requiring only two steroids was trained for classification and tested based on 24 h urine samples from 268 patients with adrenal tumor. Malignancy was excluded with a negative predictive value of 100 \% in an independent validation cohort of 84 samples of 24-h urine. A newly proposed simplified diagnostic workflow with urinary steroid profiling as first tier test could obviate additional adrenal-specific imaging in 42 of 64 patients with ACA. The new DST method is already in clinical use at the University Hospital W{\"u}rzburg, whereas the classification model based on urinary steroid profiling will require prospective validation in a larger cohort.}, subject = {Nebennierentumor}, language = {en} }