TY - JOUR A1 - Zhang, Yonghong A1 - Zheng, Lanlan A1 - Zheng, Yan A1 - Zhou, Chao A1 - Huang, Ping A1 - Xiao, Xiao A1 - Zhao, Yongheng A1 - Hao, Xincai A1 - Hu, Zhubing A1 - Chen, Qinhua A1 - Li, Hongliang A1 - Wang, Xuanbin A1 - Fukushima, Kenji A1 - Wang, Guodong A1 - Li, Chen T1 - Assembly and Annotation of a Draft Genome of the Medicinal Plant Polygonum cuspidatum JF - Frontiers in Plant Science N2 - Polygonum cuspidatum (Japanese knotweed, also known as Huzhang in Chinese), a plant that produces bioactive components such as stilbenes and quinones, has long been recognized as important in traditional Chinese herbal medicine. To better understand the biological features of this plant and to gain genetic insight into the biosynthesis of its natural products, we assembled a draft genome of P. cuspidatum using Illumina sequencing technology. The draft genome is ca. 2.56 Gb long, with 71.54% of the genome annotated as transposable elements. Integrated gene prediction suggested that the P. cuspidatum genome encodes 55,075 functional genes, including 6,776 gene families that are conserved in the five eudicot species examined and 2,386 that are unique to P. cuspidatum. Among the functional genes identified, 4,753 are predicted to encode transcription factors. We traced the gene duplication history of P. cuspidatum and determined that it has undergone two whole-genome duplication events about 65 and 6.6 million years ago. Roots are considered the primary medicinal tissue, and transcriptome analysis identified 2,173 genes that were expressed at higher levels in roots compared to aboveground tissues. Detailed phylogenetic analysis demonstrated expansion of the gene family encoding stilbene synthase and chalcone synthase enzymes in the phenylpropanoid metabolic pathway, which is associated with the biosynthesis of resveratrol, a pharmacologically important stilbene. Analysis of the draft genome identified 7 abscisic acid and water deficit stress-induced protein-coding genes and 14 cysteine-rich transmembrane module genes predicted to be involved in stress responses. The draft de novo genome assembly produced in this study represents a valuable resource for the molecular characterization of medicinal compounds in P. cuspidatum, the improvement of this important medicinal plant, and the exploration of its abiotic stress resistance. KW - genome assembly KW - resveratrol biosynthesis KW - whole-genome duplication KW - medicinal plant KW - stress tolerance KW - Polygonum cuspidatum Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-189279 SN - 1664-462X VL - 10 ER - TY - JOUR A1 - Song, Ning-Ning A1 - Jia, Yun-Fang A1 - Zhang, Lei A1 - Zhang, Qiong A1 - Huang, Ying A1 - Liu, Xiao-Zhen A1 - Hu, Ling A1 - Lan, Wei A1 - Chen, Ling A1 - Lesch, Klaus-Peter A1 - Chen, Xiaoyan A1 - Xu, Lin A1 - Ding, Yu-Qiang T1 - Reducing central serotonin in adulthood promotes hippocampal neurogenesis JF - Scientific Reports N2 - Chronic administration of selective serotonin reuptake inhibitors (SSRIs), which up-regulates central serotonin (5-HT) system function, enhances adult hippocampal neurogenesis. However, the relationship between central 5-HT system and adult neurogenesis has not fully been understood. Here, we report that lowering 5-HT level in adulthood is also able to enhance adult hippocampal neurogenesis. We used tamoxifen (TM)-induced Cre in Pet1-CreER\(^{T2}\) mice to either deplete central serotonergic (5-HTergic) neurons or inactivate 5-HT synthesis in adulthood and explore the role of central 5-HT in adult hippocampal neurogenesis. A dramatic increase in hippocampal neurogenesis is present in these two central 5-HT-deficient mice and it is largely prevented by administration of agonist for 5-HTR2c receptor. In addition, the survival of new-born neurons in the hippocampus is enhanced. Furthermore, the adult 5-HT-deficient mice showed reduced depression-like behaviors but enhanced contextual fear memory. These findings demonstrate that lowering central 5-HT function in adulthood can also enhance adult hippocampal neurogenesis, thus revealing a new aspect of central 5-HT in regulating adult neurogenesis. KW - serotonin KW - SSRI KW - hippocampal neurogenesis KW - adulthood Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-168004 VL - 6 IS - 20338 ER - TY - JOUR A1 - Lee, Ching Hua A1 - Sutrisno, Amanda A1 - Hofmann, Tobias A1 - Helbig, Tobias A1 - Liu, Yuhan A1 - Ang, Yee Sin A1 - Ang, Lay Kee A1 - Zhang, Xiao A1 - Greiter, Martin A1 - Thomale, Ronny T1 - Imaging nodal knots in momentum space through topolectrical circuits JF - Nature Communications N2 - Knots are intricate structures that cannot be unambiguously distinguished with any single topological invariant. Momentum space knots, in particular, have been elusive due to their requisite finely tuned long-ranged hoppings. Even if constructed, probing their intricate linkages and topological "drumhead" surface states will be challenging due to the high precision needed. In this work, we overcome these practical and technical challenges with RLC circuits, transcending existing theoretical constructions which necessarily break reciprocity, by pairing nodal knots with their mirror image partners in a fully reciprocal setting. Our nodal knot circuits can be characterized with impedance measurements that resolve their drumhead states and image their 3D nodal structure. Doing so allows for reconstruction of the Seifert surface and hence knot topological invariants like the Alexander polynomial. We illustrate our approach with large-scale simulations of various nodal knots and an experiment which maps out the topological drumhead region of a Hopf-link. Topological phases with knotted configurations in momentum space have been challenging to realize. Here, Lee et al. provide a systematic design and measurement of a three-dimensional knotted nodal structure, and resolve its momentum space drumhead states via a topolectrical RLC-type circuit. KW - nodal knots KW - topolectrical circuits Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-230407 VL - 11 ER -