The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog

Please always quote using this URN: urn:nbn:de:bvb:20-opus-158727
  • The abundance of high-quality genotype and phenotype data for the model organism Arabidopsis thaliana enables scientists to study the genetic architecture of many complex traits at an unprecedented level of detail using genome-wide association studies (GWAS). GWAS have been a great success in A. thaliana and many SNP-trait associations have been published. With the AraGWAS Catalog (https://aragwas.1001genomes.org) we provide a publicly available, manually curated and standardized GWAS catalog for all publicly available phenotypes from theThe abundance of high-quality genotype and phenotype data for the model organism Arabidopsis thaliana enables scientists to study the genetic architecture of many complex traits at an unprecedented level of detail using genome-wide association studies (GWAS). GWAS have been a great success in A. thaliana and many SNP-trait associations have been published. With the AraGWAS Catalog (https://aragwas.1001genomes.org) we provide a publicly available, manually curated and standardized GWAS catalog for all publicly available phenotypes from the central A. thaliana phenotype repository, AraPheno. All GWAS have been recomputed on the latest imputed genotype release of the 1001 Genomes Consortium using a standardized GWAS pipeline to ensure comparability between results. The catalog includes currently 167 phenotypes and more than 222 000 SNP-trait associations with P < 10\(^{-4}\), of which 3887 are significantly associated using permutation-based thresholds. The AraGWAS Catalog can be accessed via a modern web-interface and provides various features to easily access, download and visualize the results and summary statistics across GWAS.show moreshow less

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Metadaten
Author: Matteo Togninalli, Ümit Seren, Dazhe Meng, Joffrey Fitz, Magnus Nordborg, Detlef Weigel, Karsten Borgwardt, Arthur Korte, Dominik G. Grimm
URN:urn:nbn:de:bvb:20-opus-158727
Document Type:Journal article
Faculties:Fakultät für Biologie / Center for Computational and Theoretical Biology
Language:English
Parent Title (English):Nucleic Acids Research
Year of Completion:2018
Volume:46
Issue:D1
Pagenumber:D1150–D1156
Source:Nucleic Acids Research, 2018, 46:D1, D1150-D1156. DOI: 10.1093/nar/gkx954
DOI:https://doi.org/10.1093/nar/gkx954
Dewey Decimal Classification:5 Naturwissenschaften und Mathematik / 57 Biowissenschaften; Biologie / 570 Biowissenschaften; Biologie
Tag:genotype; model organism; phenotype
Release Date:2018/03/26
Collections:Open-Access-Publikationsfonds / Förderzeitraum 2017
Licence (German):License LogoCC BY-NC: Creative-Commons-Lizenz: Namensnennung, Nicht kommerziell 4.0 International