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The evolutionary conserved Myb-MuvB (MMB) multiprotein complex is a transcriptional master regulator of mitotic gene expression. The MMB subunits B-MYB, FOXM1 as well as target genes of MMB are often overexpressed in different cancer types. Elevated expression of these genes correlates with an advanced tumor state and a poor prognosis for patients. Furthermore, it has been reported that pathways, which are involved in regulating the mitotic machinery are attractive for a potential treatment of cancers harbouring Ras mutations (Luo et al., 2009).
This suggest that the MMB complex could be required for tumorigenesis by mediating overactivity of mitotic genes and that the MMB could be a useful target for lung cancer treatment. However, although MMB has been characterized biochemically, the contribution of MMB to tumorigenesis is largely unknown in particular in vivo.
In this thesis, it was demonstrated that the MMB complex is required for lung tumorigenesis in vivo in a mouse model of non small cell lung cancer. Elevated levels of B-MYB, NUSAP1 or CENPF in advanced tumors as opposed to low levels of these proteins levels in grade 1 or 2 tumors support the possible contribution of MMB to lung tumorigenesis and the oncogenic potential of B-MYB.The tumor growth promoting function of B-MYB was illustrated by a lower fraction of KI-67 positive cells in vivo and a significantly high impairment in proliferation after loss of B-Myb in vitro. Defects in cytokinesis and an abnormal cell cycle profile after loss of B-Myb underscore the impact of B-MYB on proliferation of lung cancer cell lines. The incomplete recombination of B-Myb in murine lung tumors and in the tumor derived primary cell lines illustrates the selection pressure against the complete loss of B-Myb and further demonstrats that B-Myb is a tumor-essential gene. In the last part of this thesis, the contribution of MMB to the proliferation of human lung cancer cells was demonstrated by the RNAi-mediated depletion of B-Myb. Detection of elevated B-MYB levels in human adenocarcinoma and a reduced proliferation, cytokinesis defects and abnormal cell cycle profile after loss of B-MYB in human lung cancer cell lines underlines the potential of B-MYB to serve as a clinical marker.
The correct regulation of cell growth and proliferation is essential during normal animal development. Myc proteins function as transcription factors, being involved in the con-trol of many growth- and proliferation-associated genes and deregulation of Myc is one of the main driving factors of human malignancies.
The first part of this thesis focuses on the identification of directly regulated Myc target genes in Drosophila melanogaster, by combining ChIPseq and RNAseq approaches. The analysis results in a core set of Myc target genes of less than 300 genes which are mainly involved in ribosome biogenesis. Among these genes we identify a novel class of Myc targets, the non-coding small nucleolar RNAs (snoRNAs). In vivo studies show that loss of snoRNAs not only impairs growth during normal development, but that overexpression of several snoRNAs can also enhance tumor development in a neu-ronal tumor model. Together the data show that Myc acts as a master regulator of ribo-some biogenesis and that Myc’s transforming effects in tumor development are at least partially mediated by the snoRNAs.
In the second part of the thesis, the interaction of Myc and the Zf-protein Chinmo is described. Co-immunoprecipitations of the two proteins performed under endogenous and exogenous conditions show that they interact physically and that neither the two Zf-domains nor the BTB/POZ-domain of Chinmo are important for this interaction. Fur-thermore ChIP experiments and Myc dependent luciferase assays show that Chinmo and Myc share common target genes, and that Chinmo is presumably also involved in their regulation. While the exact way of how Myc and Chinmo genetically interact with each other still has to be investigated, we show that their interaction is important in a tumor model. Overexpression of the tumor-suppressors Ras and Chinmo leads to tu-mor formation in Drosophila larvae, which is drastically impaired upon loss of Myc.
Das Gen E2F3 und seine Produkte sind essentiell für die Regulation des Zellzyklus. Eine E2F3-Überexpression wurde bereits in diversen anderen Tumorentitäten nachgewiesen, u.a. in Wilms-Tumoren (Kort et al., 2008), Blasenkrebs (Feber et al., 2004; Oeggerli et al., 2004), Ovarialkarzinomen (Smith et al., 2012; Reimer et al., 2011), malignen Melanomen (Noguchi et al., 2012), sowie Plattenepithelkarzinomen der Lunge (Cooper et al., 2006).
In dieser Arbeit wurden 19 mikrosatelliteninstabile kolorektale Karzinome mittels Immunhistochemie auf ihre E2F3 Expression im Vergleich zur autologen Normalschleimhaut untersucht. 57,9% der untersuchten Karzinome zeigen eine der Positivkontrolle (autologe Normalmukosa) entsprechende Intensität der Färbung. 36,8% der angefärbten Karzinome färbten sich schwächer an als die entsprechende Positivkontrolle. Nur 5,3% der Karzinome zeigte eine stärkere Anfärbung als die zugehörige Positivkontrolle. Diese Beobachtungen lassen den Schluss zu, dass das Gen E2F3 für mikrosatelliteninstabile kolorektale Karzinome kein relevantes Onkogen darstellt.
Im Rahmen des Cancer Genome Project konnten verschiedene Gene aus der Region 6pter-p22.2 identifiziert werden, die in mikrosatelliteninstabilen kolorektalen Karzinomen mutiert vorkommen. Die größte Schnittmenge konnte bei den Genen DSP (Desmoplakin) mit n=13, JARID2 (Jomunji, AT rich interactive domain 2) mit n=10! und bei ATXN1 (Ataxin1) mit n=10 ermittelt werden. Diese Gene sollten nun auf ihre Beteiligung an kolorektalen Karzinomen hin analysiert werden, beispielsweise durch Messungen der mRNA Spiegel der Genprodukte, um die Expression der jeweiligen Genprodukte im Tumorgewebe zu objektivieren sowie beispielsweise über eine Exon- Sequenzanalyse der betroffenen Abschnitte, um die Alterationen im Genom mikrosatelliteninstabiler kolorektaler Karzinome zu quantifizieren.
The transcription factor Myc interacts with several co-factors to regulate growth and proliferationand thereby enables normal animal development. Deregulation of Myc is associated witha wide range of human tumors. Myc binds to DNA together with its dimerization partner Max, preferentially to canonical E-box motifs, but this sequence-specific interaction is probably not sufficient for Myc’s binding to target genes.
In this work, the PAF1 complex was characterized as a novel co-factor of Myc in Drosophila melanogaster. All components of the complex are required for Myc’s recruitment to chromatin, but the subunit Atu has the strongest effect on Myc's binding to target genes through ist direct physical interaction with Myc. Unexpectedly, the impact of Atu depletion on the Expression of Myc target genes was weak compared to its effect on Myc binding. However, the influence of Atu becomes more prominent in situations of elevated Myc levels in vivo . Mycrepressed as well as Myc-activated targets are affected, consistent with the notion that Myc
recruitment is impaired.
An independent set of analyses revealed that Myc retains substantial activity even in the complete absence of Max. The overexpression of Myc in Max0 mutants specifically blocks their pupariation without affecting their survival, which raised the possibility that Myc might
affect ecdysone biosynthesis. This connection was studied in the second part of this Thesis which showed that Myc inhibits the expression of ecdysteroidogenic genes and thereby the production of ecdysone. Myc most likely affects the signaling pathways (PTTH and insulin
signaling) upstream of the PG, the organ where ecdysone is produced. By combining existing ChIPseq, RNAseq and electronic annotation data, we identified five potential Maxindependent Myc targets and provided experimental data that they might be involved in Myc's effect on Max mutant animals. Together our data confirm that some Myc functions are Max-independent and they raise the possibility that this effect might play a role during replication.
Development of the central nervous system in Drosophila melanogaster relies on neural stem cells called neuroblasts. Neuroblasts divide asymmetrically to give rise to a new neuroblast as well as a small daughter cell which eventually generates neurons or glia cells. Between each division, neuroblasts have to re-grow to be able to divide again. In previous studies, it was shown that neuroblast proliferation, cell size and the number of progeny cells is negatively affected in larvae carrying a P-element induced disruption of the gene mushroom body miniature (mbm). This mbm null mutation called mbmSH1819 is homozygously lethal during pupation. It was furthermore shown that the nucleolar protein Mbm plays a role in the processing of ribosomal RNA (rRNA) as well as the translocation of ribosomal protein S6 (RpS6) in neuroblasts and that it is a transcriptional target of Myc. Therefore, it was suggested that Mbm might regulate neuroblast proliferation through a role in ribosome biogenesis.
In the present study, it was attempted to further elucidate these proposed roles of Mbm and to identify the protein domains that are important for those functions. Mbm contains an arginine/glycine rich region in which a di-RG as well as a di-RGG motif could be found. Together, these two motifs were defined as Mbm’s RGG-box. RGG-boxes can be found in many proteins of different families and they can either promote or inhibit protein-RNA as well as protein-protein interactions. Therefore, Mbm’s RGG-box is a likely candidate for a domain involved in rRNA binding and RpS6 translocation. It could be shown by deletion of the RGG-box, that MbmdRGG is unable to fully rescue survivability and neuroblast cell size defects of the null mutation mbmSH1819. Furthermore, Mbm does indeed rely on its RGG-box for the binding of rRNA in vitro and in mbmdRGG as well as mbmSH1819 mutants RpS6 is partially delocalized. Mbm itself also seems to depend on the RGG-box for correct localization since MbmdRGG is partially delocalized to the nucleus. Interestingly, protein synthesis rates are increased in mbmdRGG mutants, possibly induced by an increase in TOR expression. Therefore, Mbm might possess a promoting function in TOR signaling in certain conditions, which is regulated by its RGG-box. Moreover, RGG-boxes often rely on methylation by protein arginine methyltransferases (in Drosophila: Darts – Drosophila arginine methyltransferases) to fulfill their functions. Mbm might be symmetrically dimethylated within its RGG-box, but the results are very equivocal. In any case, Dart1 and Dart5 do not seem to be capable of Mbm methylation.
Additionally, Mbm contains two C2HC type zinc-finger motifs, which could be involved in rRNA binding. In an earlier study, it was shown that the mutation of the zinc-fingers, mbmZnF, does not lead to changes in neuroblast cell size, but that MbmZnF is delocalized to the cytoplasm. In the present study, mbmZnF mutants were included in most experiments. The results, however, are puzzling since mbmZnF mutant larvae exhibit an even lower viability than the mbm null mutants and MbmZnF shows stronger binding to rRNA than wild-type Mbm. This suggests an unspecific interaction of MbmZnF with either another protein, DNA or RNA, possibly leading to a dominant negative effect by disturbing other interaction partners. Therefore, it is difficult to draw conclusions about the zinc-fingers’ functions.
In summary, this study provides further evidence that Mbm is involved in neuroblast proliferation as well as the regulation of ribosome biogenesis and that Mbm relies on its RGG-box to fulfill its functions.
Die im Rahmen der Arbeit erzielten Ergebnisse liefern neue Erkenntnisse über einen neuen Sternzellsubtyp der murinen Leber. Bei Gewebeverletzung differenzieren Sternzellen im Allgemeinen zu Myofibroblasten, welche Extrazellulärmatrix produzieren. Des Weiteren sind Sternzellen die Perizyten der Leber und spielen eine Rolle in der Angiogenese und Gefäßremodellierung.
Der in präliminären Untersuchungen identifizierte Sternzellsubtyp zeichnet sich durch die Expression von tdTomato in Abhängigkeit des SMMHC-Promotors aus (SMMHC/tdTomato\(^+\) Sternzellen). In dieser Arbeit wurden SMMHC/tdTomato\(^+\) Sternzellen immunhistochemisch unter physiologischen und fibrotischen Bedingungen untersucht.
Mit Hilfe von Lineage Tracing konnte zunächst die Zellmauserung der SMMHC/tdTomato\(^+\) Sternzellen gezeigt werden. Durch Leberzonen-spezifische Marker wurde daraufhin nachgewiesen, dass SMMHC/tdTomato\(^+\) Sternzellen in Zone 1 des Leberazinus lokalisiert sind, weswegen diese Zellen im Weiteren „Zone 1-HSC“ genannt wurden. Als potenzielle Progenitorzellnische der Zone 1-HSC wurde das Portalfeld eingegrenzt.
Außerdem wurde die Funktion der Zone 1-HSC in der CCl\(_4\)-induzierten Leberfibrose untersucht. Es stellte sich heraus, dass Zone 1-HSC bereits früh in der Fibrose die Zonierung verlieren und diese auch nach Regenerationszeit nicht wiederhergestellt wird. Es wurde nachgewiesen, dass Zone 1-HSC nicht zu Myofibroblasten differenzieren. Stattdessen spielen Zone 1-HSC möglicherweise eine Rolle in der sinusoidalen Kapillarisierung in Folge einer CCl\(_4\)-induzierten Fibrose.