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- Theodor-Boveri-Institut für Biowissenschaften (23)
- Institut für Anorganische Chemie (6)
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- Institut für Molekulare Infektionsbiologie (3)
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The optimal probability and distance of dispersal largely depend on the risk to end up in unsuitable habitat. This risk is highest close to the habitat’s edge and consequently, optimal dispersal probability and distance should decline towards the habitat’s border. This selection should lead to the emergence of spatial gradients in dispersal strategies. However, gene flow caused by dispersal itself is counteracting local adaptation. Using an individual based model we investigate the evolution of local adaptations of dispersal probability and distance within a single, circular, habitat patch. We compare evolved dispersal probabilities and distances for six different dispersal kernels (two negative exponential kernels, two skewed kernels, nearest neighbour dispersal and global dispersal) in patches of different size. For all kernels a positive correlation between patch size and dispersal probability emerges. However, a minimum patch size is necessary to allow for local adaptation of dispersal strategies within patches. Beyond this minimum patch area the difference in mean dispersal distance between center and edge increases linearly with patch radius, but the intensity of local adaptation depends on the dispersal kernel. Except for global and nearest neighbour dispersal, the evolved spatial pattern are qualitatively similar for both, mean dispersal probability and distance. We conclude, that inspite of the gene-flow originating from dispersal local adaptation of dispersal strategies is possible if a habitat is of sufficient size. This presumably holds for any realistic type of dispersal kernel.
Oviposition site selection in insects is essential in terms of low egg mortality, high offspring survival and therefore a high reproductive output. Although oviposition height could be a crucial factor for the fitness of overwintering eggs, it has rarely been investigated. In this study the oviposition height of a polyphagous leaf beetle, Galeruca tanaceti Linnaeus in different habitats and at different times of the season was examined and its effect on egg clutch mortality was recorded. The leaf beetle occurs as an occasional pest on several agricultural plants. It deposits its eggs within herbaceous vegetation in autumn. Eggs are exposed to numerous biotic and abiotic mortality factors summarized as egg parasitism and winter mortality. Oviposition height of the leaf beetle was not uniform, but changed significantly with the structure of the habitat and during the season. Mean oviposition height per site (70.2±4.9 cm) was significantly higher than mean vegetation height (28.4±2.4 cm). Height of plants with egg clutches attached and oviposition height were significantly positively correlated. The results suggest that females try to oviposit as high as possible in the vegetation and on the plants selected. In accordance with this, the probability of egg parasitism and of winter egg clutch mortality significantly declined with increasing oviposition height. A preference of G. tanaceti for oviposition sites high up in the vegetation might therefore have evolved due to selection pressures by parasitoids and winter mortality.
Abstract: Background Social insects show considerable variability not only in social organisation but also in the temporal pattern of nest cycles. In annual eusocial sweat bees, nest cycles typically consist of a sequence of distinct phases of activity (queen or workers collect food, construct, and provision brood cells) and inactivity (nest is closed). Since the flight season is limited to the time of the year with sufficiently high temperatures and resource availability, every break reduces the potential for foraging and, thus, the productivity of a colony. This apparent waste of time has not gained much attention. Results We present a model that explains the evolution of activity breaks by assuming differential mortality during active and inactive phases and a limited rate of development of larvae, both reasonable assumptions. The model predicts a systematic temporal structure of breaks at certain times in the season which increase the fitness of a colony. The predicted pattern of these breaks is in excellent accordance with field data on the nest cycle of the halictid Lasioglossum malachurum. Conclusion Activity breaks are a counter-intuitive outcome of varying mortality rates that maximise the reproductive output of primitively eusocial nests.
Egg distribution in herbivorous beetles can be affected by bottom-up (host plant), and by top-down factors (parasitoids and predators), as well as by other habitat parameters. The importance of bottom-up and top-down effects may change with spatial scale. In this study, we investigated the influence of host plant factors and habitat structure on egg distribution in the leaf beetle Cassida canaliculata Laich. (Coleoptera: Chrysomelidae), a monophagous herbivore on Salvia pratensis L. (Lamiales: Lamiaceae), on four spatial scales: individual host plant, microhabitat, macrohabitat, and landscape. At the individual host plant scale we studied the correlation between egg clutch incidence and plant size and quality. On all other scales we analyzed the relationship between the egg clutch incidence of C. canaliculata and host plant percentage cover, host plant density, and the surrounding vegetation structure. Vegetation structure was examined as herbivores might escape egg parasitism by depositing their eggs on sites with vegetation factors unfavorable for host searching parasitoids. The probability that egg clutches of C. canaliculata were present increased with an increasing size, percentage cover, and density of the host plant on three of the four spatial scales: individual host plant, microhabitat, and macrohabitat. There was no correlation between vegetation structure and egg clutch occurrence or parasitism on any spatial scale. A high percentage of egg clutches (38–56%) was parasitized by Foersterella reptans Nees (Hymenoptera: Tetracampidae), the only egg parasitoid, but there was no relationship between egg parasitism and the spatial distribution of egg clutches of C. canaliculata on any of the spatial scales investigated. However, we also discuss results from a further study, which revealed top-down effects on the larval stage.
Human caretaker genes play a central role in the DNA damage response. Their defects cause a number of rare diseases which show genetic instability and increased propensity to malignant cell growth. The first of these diseases to be described in this thesis is Fanconi anemia (FA), a rare chromosome instability disorder with recessive inheritance characterized by progressive bone marrow failure, variable congenital malformations, and cancer predisposition. There are at least 13 FA complementation groups (FA-A, B, C, D1, D2, E, F, G, I, J, L, M and N), each representing mutations in a distinct gene. To date, except FANCI all the corresponding genes have been identified, denoted as FANC-A, B, C, D1/BRCA2, D2, E, F, G, J/BRIP1/BACH1, L/PHF9, M/Hef and N/PALB2.Further information is provided in chapters 1 and 2. FA cells are characterized by high sensitivity to DNA crosslinking agents and to elevated oxygen tension, but it is controversial whether they are also radiosensitive. Systematic testing (chapter 3) of primary skin fibroblast cultures from all currently known FA complementation groups revealed no increased sensitivity towards ionizing radiation (IR) and ultra-violet light (UV) when growing cells at physiological (5% v/v) oxygen levels. Despite considerable interstrain variations FA cells showed no systematic differences to cell cultures derived from healthy controls, whereas positive controls (Ataxia telangiectasia and Cockayne syndrome) proved highly sensitive to IR or UV. Lack of radiosensitivity was also shown for the FANCD2 gene, a central gene in the FA/BRCA pathway whose mutational inactivation was studied in a large patient cohort. FA patients excluded previously from complementation groups FA-A, -C, E, F, G or L were screened for mutations in FANCD2. Even though mutation analysis of FANCD2 is complicated by the presence of pseudogene regions, biallelic FANCD2 mutations were identified in a series of 32 patients (chapter 4). The predominant types of mutations result in aberrant splicing causing exon skipping, exonisation of intronic sequence, activation of cryptic and creation of new 3´ splice sites. Many alleles were recurrent and could be associated with ethnicity. Interestingly, residual FANCD2 protein was observed in all available patient cell lines, and functionality was indicated by the presence of the monoubiquitinated FANCD2 isoform. This suggests that viability of FA-D2 patients depends on the presence of hypomorphic or leaky mutations. In chapter 5 the worldwide second FA patient belonging to complementation group FA-L is reported. Genetic analysis of patient derived fibroblasts revealed heterozygosity for a 5-bp deletion (exon 7) and a missense substitution (exon 11). In contrast to the tested fibroblasts two independent lymphoid cell lines proved resistant to the DNA crosslinking agent mitomycin C and showed proficient FANCD2 monoubiquitination. The functional reversion due to a compensating mutation in the splice acceptor site results in aberrant splicing and the restoration of the open reading frame. However, the revertant mosaicsm was restricted to the lymphatic cell lines such that there was no clinical improvement involving the other hematopoietic cell lineages, and bone marrow transplantation was required to treat the patients bone marrow failure. A direct link of Fanconi anemia to other DNA repair processes was provided by the identification of the BRCA1 interacting protein 1, BRIP1/BACH1, as a genuine FA gene (chapter 6). Genetic mapping of consanguineous Inuit families resulted in the identification of truncating mutations in BRIP1. In contrast to most of the other FA patients FANCD2 monoubiquitination was intact, linking these patients to complementation group FA-J. Biallelic mutations in BRIP1 were found in eight additional patients, one of whom was assigned previously to FA-J by somatic cell fusion. Therefore it could be shown that the postulated FANCJ gene is identical with BRIP1. This finding emphasizes the close connection between the BRCA- and the FA-family of genes, both involved in the DNA damage response. Biallelic mutations in BRCA2/FANCD1 cause a severe form of Fanconi anemia with childhood malignancies. Recently, a BRCA2 interacting protein was identified as a “partner and localizer of BRCA2” (PALB2) which confers cellular MMC resistance. A candidate gene approach revealed biallelic mutations in seven FA patients that developed solid tumors in early childhood (chapter 7). Patient cells show no or little PALB2 protein, lack of MMC induced RAD51 foci formation, and high chromosomal instability. Transduction of PALB2 cDNA complemented the MMC sensitive phenotype. Therefore, biallelic mutations in PALB2 cause a new subtype of FA, denoted as FA-N, which is connected with a high and early cancer risk. With respect to one of the most prominent but least understood caretaker gene syndromes, Fanconi anemia, this thesis has expanded our knowledge as follows: 1. refutation of major cellular radiosensitivity of FA cell lines regardless of complementation group, 2. detection of hypomorphic mutations and residual protein levels as a prerequisite for viability of the FANCD2 gene, 3. description of the worldwide second patient belonging to complementation group FA-L whose lymphocytes exhibit a novel type of somatic reversion, 4. participation in the discovery and functional characterization of two novel FA genes (FANCJ and FANCN). The last chapter of the thesis deals with a DNA repair pathway that is activated following exposure to ionizing radation. One of the central proteins responding to radiation-induced DNA damage is the product of the ATM gene which signals to a myriad of other proteins in response to DNA double strand breaks, including the NMR complex. This complex formed by the NBS1/MRE11/RAD50 proteins is thought to act as a specifi c sensor of DNA double-strand breaks. Mutations of MRE11 and NBS1 are associated with the radiation sensitivity syndromes Ataxia-telangiectasia-like disorder (AT-LD) and Nijmegen breakage syndrome (NBS), respectively. Chapter 8 presents the first ever identified patient with RAD50 deficiency due to biallelic germline mutations in the RAD50 gene. An 18-year-old German girl who has a variant form of NBS without immunodeficiency was found to be compound heterozygous for a nonsense mutation and the loss of the natural termination signal in the RAD50 gene. RAD50 protein expression was reduced to less than one tenth of normal in her fibroblasts and lymphoblastoid cells. At the nuclear level, RAD50 deficiency was associated with a high frequency of spontaneous chromatid exchanges and with the failure to form MRE11 and NBS1 nuclear foci in response to irradiation. ATM autophosphorylation, phosphorylation of p53 at serine 15 and the transcriptional induction of p21/WAF1 mRNA were reduced, and there was no evidence for Ser343 phosphorylation of NBS1 in RAD50 defi cient cells following irradiation. These defects could be complemented by expression of wildtype RAD50 cDNA. Our data shows that RAD50 modulates, like NBS1 and MRE11, the ATM-mediated DNA damage response and the G1/S cell cycle checkpoint. In addition, RAD50 appears to be required for nuclear localization of MRE11, and for NBS1 focus formation, underlining its importance for the proper function of the NMR complex. Owing to the studies performed within the framework of this thesis, RAD50 deficiency can now be added to the growing list of human caretaker gene syndromes with pronounced radiosensitivity that is distinctive at both the cellular and the clinical level from deficiencies involving the other members of the NMR complex.
This thesis describes the inclusion of dynamical effects in the theoretical calculation of Electron Paramagnetic Resonance (EPR) spectroscopic parameters. The studies were performed using Density Functional Theory (DFT) methodology and a perturbation-theoretical approach to g-tensor calculations. Hydrogen atoms trapped in octasilasesquioxane cages display unexpectly high, positive g-values. Computational simulation of these systems successfully reproduced the positive g-values and found them to arise from spin-orbit coupling around the oxygen nuclei. Dynamical effects were estimated by calculating the potential well in which the hydrogen atom moves. Semiquinone radical anions are important bioradicals that play a role in photosynthesis and respiration. The simplest and most prototypical, benzosemiquinone anion, was simulated both in the gas phase and in aqueous solution by Car-Parrinello Molecular Dynamics (CPMD). The neutral benzoquinone was also simulated for comparison. The solvation environments of both the anionic and neutral molecules were analysed and compared. EPR parameters were calculated for the semiquinone, providing the first example of full inclusion of dynamic effects in g-tensor calculation. The effects of different solvation interactions on the g-tensor and hyperfine interactions were extensively examined. Additionally, static calculations (i.e., calculations not incorporating any dynamical effects) were performed. Comparison between these (and prior computational studies) and the dynamical system allowed an assessment of the effects of dynamics on solvation and EPR parameters. Ubisemiquinone radical anion, one of the most widely-occurring semiquinone radicals, was simulated in the aqueous phase using CPMD. The solvation environment was analysed and EPR parameters were calculated. The motion of the side-chain, and its effects on solvation and EPR parameters, were examined.
Neural networks can synchronize by learning from each other. For that purpose they receive common inputs and exchange their outputs. Adjusting discrete weights according to a suitable learning rule then leads to full synchronization in a finite number of steps. It is also possible to train additional neural networks by using the inputs and outputs generated during this process as examples. Several algorithms for both tasks are presented and analyzed. In the case of Tree Parity Machines the dynamics of both processes is driven by attractive and repulsive stochastic forces. Thus it can be described well by models based on random walks, which represent either the weights themselves or order parameters of their distribution. However, synchronization is much faster than learning. This effect is caused by different frequencies of attractive and repulsive steps, as only neural networks interacting with each other are able to skip unsuitable inputs. Scaling laws for the number of steps needed for full synchronization and successful learning are derived using analytical models. They indicate that the difference between both processes can be controlled by changing the synaptic depth. In the case of bidirectional interaction the synchronization time increases proportional to the square of this parameter, but it grows exponentially, if information is transmitted in one direction only. Because of this effect neural synchronization can be used to construct a cryptographic key-exchange protocol. Here the partners benefit from mutual interaction, so that a passive attacker is usually unable to learn the generated key in time. The success probabilities of different attack methods are determined by numerical simulations and scaling laws are derived from the data. If the synaptic depth is increased, the complexity of a successful attack grows exponentially, but there is only a polynomial increase of the effort needed to generate a key. Therefore the partners can reach any desired level of security by choosing suitable parameters. In addition, the entropy of the weight distribution is used to determine the effective number of keys, which are generated in different runs of the key-exchange protocol using the same sequence of input vectors. If the common random inputs are replaced with queries, synchronization is possible, too. However, the partners have more control over the difficulty of the key exchange and the attacks. Therefore they can improve the security without increasing the average synchronization time.
In spite of David Lodge’s rejection of the theories labelled as poststructuralist, this thesis proves that his novels can be interpreted from a Foucauldian perspective. The concept of discourse, seen by the French philosopher as intricately linked with knowledge, power and truth, enables the distinction of four main discourses in Lodge’s novels, religious, gender, ethnic and literary. The analysis reveals that in David Lodge’s fiction there is a perpetual struggle for power illustrating Foucault’s idea of the interdependence between power, knowledge, truth and discourses circulated by institutions.
Helicobacter pylori (H. pylori) is a gram-negative, microaerophilic, spiral-shaped bacterium. It resides in the gastric mucous layer and epithelial lining of the stomach, often clustering at the junction of epithelial cells. H. pylori colonization usually occurs during childhood, and, when left untreated, generally persists for the host’s lifetime. Persistent H. pylori infection can cause chronic superficial gastritis and gastric duodenal ulcers, which is possibly linked to the development of gastric carcinoma and primary gastric lymphoma, especially of the mucosa-associated lymphoid tissue (MALT) type. It was recently defined as a class 1 carcinogen. The gastric inflammatory response to H. pylori infection is characterized by infiltration of the mucosa by neutrophils, T and B cells, plasma cells and macrophages. This reaction is initially induced by H. pylori attachment, followed by cytokine release by gastric epithelial cells. Epidemiological studies revealed that more than 50% of adults are infected with H. pylori all over the world. However, interestingly, only a subset of individuals develops serious H. pylori-related disease, while most infected individuals show no clinical symptoms. Gastric epithelial cells, like intestinal epithelial cells, express a subset of Toll-like receptors (TLRs) and similar pattern recognition receptors, which are important for the activation of the innate immune system. Bacterial components such as lipopeptides, peptidoglycan, LPS, flagellin, and CpG DNA are the ligands of TLRs. Thus, TLRs in gastric epithelial cells might be able to contribute to innate immune responses to H. pylori infection. However, there is scant knowledge about the mechanisms of innate immune response to acute and chronic H. pylori infection. This study is focused on host cell interaction with H. pylori flagellins, which are major components of the flagellar apparatus, and innate immune responses against them. The flagellins, which are essential for bacterial motility, are important for H. pylori to survive in the stomach mucus during the whole infectious cycle. Flagellins are known to act as the main determinant of many mucosal pathogenic bacteria that mediates proinflammatory signaling, including transcriptional factor NF-B activation via TLR5. In the first part of the study, we investigated the effects of H. pylori flagellins on TLR5 expression, NF-B activation and IL-8 production in various human intestinal and gastric epithelial cell lines by using Western blotting, semi-quantitative RT-PCR and ELISA. IL-8 is a potent neutrophil-activating chemokine expressed by gastric epithelial cells. When we stimulated the cells with the native form of or E. coli-expressed recombinant H. pylori flagellins, FlaA and FlaB, IL-8 was not induced in any case, while S. typhimurium flagellin (FliC) induced it significantly. H. pylori was able to modulate TLR5 protein expression and NF-B activation in epithelial cells regardless of the presence of flagellins. Having established the finding that H. pylori flagellins have unusually low immune-stimulatory properties, we further investigated to find out possible reasons why H. pylori flagellins are distinct from other flagellins of pathogenic bacteria in terms of immune-stimulatory activity. From amino acid sequence comparisons, we found that some regions in the terminal D0D1 protein domains of H. pylori flagellins are different from flagellins of other pathogenic bacteria. D0D1 is the domain which is known to interact with TLR5 in Salmonella FliC. To examine whether the differences endow H. pylori flagellins with low immune-stimulatory properties, we created several mutated H. pylori flagellins (FlaA and FlaB) by site-directed mutagenesis that contain one to four epitopes of Salmonella flagellin D0D1 domain amino acid sequences. The mutant flagellins expressed both in H. pylori and E. coli were used to determine their influence on TLR5-signaling mediators and cytokines, such as MAPkinases, (ERK, p38), NF-B, IL-8, and MIP-3. Salmonella FliC expressed in E. coli induced activation of p38, IB and NF-B leading to IL-8 and MIP-3 production in gastric epithelial cells. However, none of the H. pylori flagellin mutants activated MAP kinases or induced those cytokines. In a co-immunoprecipitation assay none of the recombinant wild type or mutated H. pylori flagellins showed any direct physical interaction with TLR5, while Salmonella FliC significantly co-precipitated with TLR5. Interestingly, we found H. pylori flagellins bind to the surface of gastric epithelial cells like FliC, although they do not bind to or stimulate TLR5. Based on the physical interaction of H. pylori flagellins and FliC with human gastric epithelial cells, we further analyzed transcriptional regulation by H. pylori flagellin in these host cells using microarray analysis. The result showed that H. pylori flagellins modulate host cell gene expression, and many of the identified regulation events overlap with the genes regulated by FliC. These findings imply that H. pylori flagellins do play a role in gene regulation of host cells probably through still unknown factors or receptors, although they do not trigger TLR5-related signaling pathways. The results of our study suggest that, in addition to the low immune-stimulatory activity of H. pylori LPS, the evolutionary reduction in stimulating activity of H. pylori flagellins on the local innate immune responses in the stomach in vivo might be a further strategy of this chronic mucosal pathogen to evade and minimize deleterious host responses, thereby promoting life-long persistence in the host, and possibly contributing to cancerogenesis.
This thesis extends the classical theoretical work of Macevicz and Oster (1976, expanded by Oster and Wilson, 1978) on adaptive life history strategies in social insects. It focuses on the evolution of dynamic behavioural patterns (reproduction and activity) as a consequence of optimal allocation of energy and time resources. Mathematical modelling is based on detailed empirical observations in the model species Lasioglossum malachurum (Halictidae; Hymenoptera). The main topics are field observations, optimisation models for eusocial life histories, temporal variation in life history decisions, and annual colony cycles of eusocial insects.