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- Arabidopsis thaliana (2)
- BMP (2)
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- Theodor-Boveri-Institut für Biowissenschaften (19)
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- Julius-von-Sachs-Institut für Biowissenschaften (7)
- Physikalisches Institut (5)
- Institut für Theoretische Physik und Astrophysik (4)
- Pathologisches Institut (4)
- Institut für Informatik (3)
- Institut für Klinische Biochemie und Pathobiochemie (3)
- Institut für Virologie und Immunbiologie (3)
- Lehrstuhl für Biochemie (3)
The aim of the present study was to design different dosage forms as carrier systems to deliver sorafenib to the lung of BXB-23 transgenic mice using different routes of administration. Three dosage forms were used one of them was an oil-in-water emulsion and the oral route was chosen for this experiment. The other delivery system was a liposome preparation for intratracheal instillation. In this case the oral route was considered as a control experiment. The last dosage form was PLGA microspheres. Before sorafenib administration it was important to develop a HPLC method to assess sorafenib absorption after its administration and to determine its concentrations in mouse serum. The HPLC method allowed sorafenib quantification in small volumes (30 µl) of mouse serum and tissues. The developed HPLC method was validated resulting in satisfactory selectivity, good linearity, good accuracy and precision over the concentration range examined. Sorafenib was successfully incorporated in a fat emulsion (o/w) using a traditional method resulting in a white homogenous emulsion and no particle aggregation was observed. Sorafenib exhibited antitumor activity on the lung adenoma in BXB-23 transgenic mice when administered orally (2 mg sorafenib per mouse) in the emulsion preparation. The determined effect was an approximately 29 % reduction in the tumor area of the adenoma foci and a proliferation reduction. In order to improve the pharmacological effects of sorafenib on the lung adenoma in BXB-23 mice, the targeting of sorafenib directly to the site of action (the lung) was an attractive concept. For this purpose the intratracheal route was used. Since sorafenib administration by instillation required incorporation of sorafenib in a dosage form suitable for its lipophilic nature, a liposome suspension was the second dosage form used. A lyophilization method was employed for sorafenib liposome preparation utilizing dilauroylphosphatidylcholine (DLPC) which is safe and tolerable for the lung. Incorporation of sorafenib in the liposomes did not influence the particle size and its distribution. The sorafenib liposomes showed high encapsulation efficiency, good stability at 4 °C for one month and satisfactory in vitro release properties and inhibited Raf-1 mediated activation of ERK in cell culture assay. In a pharmacokinetic experiment sorafenib loaded liposomes were instilled directly into the lung. The results revealed that a significant level of sorafenib was achieved in the lung tissues after 2 hours and then reduced after 48 h and remained nearly constant for one week. On the other hand, only traces of sorafenib were found in the mice serum up to 48 h. Subsequently, the pharmacological activity of sorafenib (1 mg per mouse) was studied when delivered in a liposomal suspension intratracheally to treat the lung adenoma of BXB-23 mice. The data of this experiment demonstrated that sorafenib intratracheal instillation resulted in a reduction of tumor area of adenoma foci (67 %) and an elevation of the percent of apoptotic cells. In contrast, prolongation of the treatment period did not further enhance sorafenib activity on the lung adenoma. This previous finding suggested a development of multidrug resistance (MDR) by the adenoma foci cells against sorafenib instillation, which was examined by immunohistochemistry staining. The percent of MDR positive cells was higher after two and three weeks sorafenib liposome instillation treatment than that after one week treatment. The last dosage form used for sorafenib was microspheres, which were prepared by emulsion-diffusion-evaporation method using biodegradable PLGA 50:50 resulting in a white lyophilized powder. The system was characterized physicochemically and revealed a good microspheres yield, high encapsulation efficiency, a homogenous particle size distribution and slow in vitro release of sorafenib. The other strategy studied in the present research project was gene delivery to target the lung bearing tumor of BXB-23 mice using a non-viral vector (polyethylenimine). Polyethylenimine (PEI) was used to investigate its efficiency in transfecting lung bearing tumor of BXB-23 mice model and its ability to transfect the adenoma foci cells. LacZ, which encodes Beta-galactosidase was used in the present study as a reporter gene and was complexed with PEI before delivered intravenously. A high LacZ expression in the alveolar region with some expression in the adenoma foci was observed. On contrary, a low LacZ expression in the alveoli and in the adenoma foci was achieved after instillation of the same polyplex intratracheally.
Despite its precise agreement with the experiment, the validity of the standard model (SM) of elementary particle physics is ensured only up to a scale of several hundred GeV so far. Even more, the inclusion of gravity into an unifying theory poses a problem which cannot be solved by ordinary quantum field theory (QFT). String theory, which is the most popular ansatz for a unified theory, predicts QFT on noncommutative space-time as a low energy limit. Nevertheless, independently of the motivation given by string theory, the nonlocality inherent to noncommutative QFT opens up the possibility for the inclusion of gravity. There are no theoretical predictions for the energy scale Lambda_NC at which noncommutative effects arise and it can be assumed to lie in the TeV range, which is the energy range probed by the next generation of colliders. Within this work we study the phenomenological consequences of a possible realization of QFT on noncommutative space-time relying on this assumption. The motivation for this thesis was given by the gap in the range of phenomenological studies of noncommutative effects in collider experiments, due to the absence in the literature of Large Hadron Collider (LHC) studies regarding noncommutative QFTs. In the first part we thus performed a phenomenological analysis of the hadronic process pp -> Z gamma -> l^+l^- gamma at the LHC and of electron-positron pair annihilation into a Z boson and a photon at the International Linear Collider (ILC). The noncommutative extension of the SM considered within this work relies on two building blocks: the Moyal-Weyl star-product of functions on ordinary space-time and the Seiberg-Witten maps. The latter relate the ordinary fields and parameters to their noncommutative counterparts such that ordinary gauge transformations induce noncommutative gauge transformations. This requirement is expressed by a set of inhomogeneous differential equations (the gauge equivalence equations) which are solved by the Seiberg-Witten maps order by order in the noncommutative parameter Theta. Thus, by means of the Moyal-Weyl star-product and the Seiberg-Witten maps a noncommutative extension of the SM as an effective theory as expansion in powers of Theta can be achieved, providing the framework of our phenomenological studies. A consequence of the noncommutativity of space-time is the violation of rotational invariance with respect to the beam axis. This effect shows up in the azimuthal dependence of cross sections, which is absent in the SM as well as in other models beyond the SM. Thus, the azimuthal dependence of the cross section is a typical signature of noncommutativity and can be used in order to discriminate it against other new physics effects. We have found this dependence to be best suited for deriving the sensitivity bounds on the noncommutative scale Lambda_NC. By studying pp -> Z gamma -> l^+l^- gamma to first order in the noncommutative parameter Theta, we show in the first part of this work that measurements at the LHC are sensitive to noncommutative effects only in certain cases, giving bounds on the noncommutative scale of Lambda_NC > 1.2 TeV. Our result improved the bounds present in the literature coming from past and present collider experiments by one order of magnitude. In order to explore the whole parameter range of the noncommutativity, ILC studies are required. By means of e^+e^- -> Z gamma -> l^+l^- gamma to first order in Theta we have shown that ILC measurements are complementary to LHC measurements of the noncommutative parameters. In addition, the bounds on Lambda_NC derived from the ILC are significantly higher and reach Lambda_NC > 6 TeV. The second part of this work arose from the necessity to enlarge the range of validity of our model towards higher energies. Thus, we expand the neutral current sector of the noncommutative SM to second order in $\theta$. We found that, against the general expectation, the theory must be enlarged by additional parameters. The new parameters enter the theory as ambiguities of the Seiberg-Witten maps. The latter are not uniquely determined and differ by homogeneous solutions of the gauge equivalence equations. The expectation was that the ambiguities correspond to field redefinitions and therefore should vanish in scattering matrix elements. However, we proved that this is not the case, and the ambiguities do affect physical observables. Our conjecture is, that every order in Theta will introduce new parameters to the theory. However, only the experiment can decide to what extent efforts with still higher orders in Theta are reasonable and will also give directions for the development of theoretical models of noncommutative QFTs.
The continuously increase in resistance of human pathogenic microorganisms to the known antibiotics leads to the necessity for searching new sources for production of new active antimicrobial compounds from different natural sources especially plants, since many plants have been found to be able to produce antimicrobial compounds as a defense phenomenon against invading microorganisms. The aim of this work is to screen cultures for production of antimicrobial activity against representative of human pathogenic microorganisms and selection the most active cell culture producing antimicrobial protein(s) which are active against these pathogenic microorganisms and also isolation ,purification of the active protein(s) and cloning of its/their genes. Ten different plant suspension cultures have been screened in presence of nine elicitors for their antimicrobial activity against five selected human pathogenic microorganisms, and it has been found that the heterotrophic cultures are more active against the tester isolates than the autotrophic ones. The intracellular fraction of the mixotrophic Arabidopsis thaliana culture elicited with salicylic acid showed the highest antimicrobial activity against the tester isolates. The presence of proteinous antimicrobial activity has been elucidated by testing the activity of ammonium sulphate precipitate against Candida maltosa. High speed centrifugation technique has been used for partial purification of the active protein. The proteinous nature of the isolated compound has been confirmed by using bioautography technique and its molecular weight could be estimated to be around 26KDa. The active protein has been purified using gel filtration, and using mass spectrometry technique, for microsequencing of the active protein, it has been found that the function of the protein is unknown and we have termed it as AtPDP1 according to Arabidopsis thaliana Plat-Domain Protein1, since it contains a plant stress domain termed PLAT domain. It has been found that a second protein from the same plant with high homology level to AtPDP1 with the same domain, we termed it as AtPDP2. Genes for AtPDP1 and AtPDP2 have been cloned in E. coli using PGEM-T easy vector. The expression of both genes have been tested using Digital Northern program, and it has been observed that both genes are induced by different pathogens, chemicals known to induce defense in plant cells and also different hormones. We tried to clone the gene for AtPDP1 in PBI121 binary vector under the control of an elicitor inducible promoter of a proteinase inhibitor gene, to test its function in plant by overexpression, but we did not succeeded. Also the work aims to cloning the different known thaumatin genes from Arabidopsis thaliana for future work which represented by testing their expression under different stimuli, since most thaumatins have antimicrobial activity and some of them are active against Candida spp..Thirteen genes of known thaumatins from Arabidopsis thaliana have been cloned in PGEM-Teasy vector in DH5-alpha cells. coli cells. The expression of the thirteen genes has been done using Digital Northern program and it has been found that different genes show different expressions under different stimuli and the expression of At1g75800 gene was the maximum under all stimuli. The minimum expression of genes was for At1g75050. The rest of thaumatin genes showed moderate expressions under different stimuli.
Infrared photodissociation spectroscopy of ionic hydrocarbons : microsolvation and protonation sites
(2007)
This work has presented a spectroscopic analysis of three types of hydrocarbon cations: two ionized aromatic hydrocarbons, two protonated aromatic hydrocarbons and the cation of a fundamental radical hydrocarbon. The experiments were centered on the proton stretch vibrations of mass-selected complexes of these systems and polar (H2O) and non polar (Ar, N2, CO2) ligands. The experiments have been done in a tandem mass spectrometer coupled with an electron impact ionization ion source; an OPO laser system was used as tunable IR light source. All the proposed dimer structures have been also modeled using quantum chemical calculations (QCC). These calculations have consistently been matched with the experimental results and have enabled clear identification of the spectral features observed. This has enabled the evaluation of thermochemical properties which could not be extracted directly from experiment. The experiments done on complexes of 1-Np+ and Im+ have allowed for the acidity of their various groups to be probed: the shifts in the frequency as well as the enhancement in the intensity of the OH and NH stretch vibrations resulting from the complexation have yielded dependences on both the species (L) and the number (n) of the ligands. OH bound 1-Np+···Ar has been detected for the first time, showing that the REMPI-IRPD method is severely limited with respect to the production of the most stable isomer of a given cationic complex. The detection of c-1-Np+···(N2)n corresponds to the first observation of c-1-Np+ complexes and enables thus direct comparison of both 1-Np+ rotamers. The shift of the NH vibration of Im+···N2(H) yielded the first experimental estimate for the PA of the imidazyl radical. It was also found that the most stable 1-Np+···Ar and Im+···Ar structures differ qualitatively from that of the corresponding neutral dimers (H-bound vs pi-bound), emphasizing the large impact of ionization on the interaction potential and the preferred recognition motif between acidic aromatic molecules (A) and nonpolar ligands. The IRPD spectra of 1-Np+···Ln and Im+···Ln yielded spectroscopic information about the CH, NH and OH stretch vibrations of bare 1-Np+ and Im+. The dependence of the shifts in the frequency of the OH and NH stretch vibrations allows for creating microsolvation models. The spectroscopic results obtained on size-selected 1-NpH+···Ln show that, in the output of the presently used ion source, three classes of 1-NpH+ isomers can be identified: oxonium ions (1-Np protonated at the O atom); carbenium ions obtained by protonation in the para and ortho positions with respect to the OH functional group; carbenium ions obtained by the addition of a proton to well-defined sites on the second naphthalene ring. The spectral identification of these three classes of protonation sites is supported by their different photofragmentation patterns. It was demonstrated that the spectroscopic monitoring of the microsolvation of ImH+ in Ar and N2 together with the QCCs paint a very detailed picture of the microsolvation process, evidencing clear differences between the microsolvation models as function of the PA of the ligands. Important differences have also been identified between the various binding sites, enabling the creation of a clear scale of priorities for occupation of the binding sites during microsolvation. The application of IRPD to the study of microhydrated ImH+ provided for the first time direct spectroscopic information on the properties of the N-H bonds of this biomolecular building block under controlled microhydration. It was demonstrated that, as protonation enhances the acidity of the NH groups, the ability for proton conductivity of ImH+ increases. A very important result is derived from the IRPD spectroscopy of C2H5+···L (L = Ar, N2, CO2, CH4) dimers. The equilibrium geometry of the C2H5+ has long been debated. Now, IRPD spectra were recorded over the range of the CH stretch fundamentals (covering possible sp3 and sp2 hybridization of C). Depending on the ligand species, the spectra are found to be dominated by the fingerprint of two largely different dimer geometries. Using the experimental C2H5+···Ar spectrum and the corresponding QCCs, the structure of the (weakly perturbed) C2H5+ was found to be the nonclassical one, with one proton straddling across the C=C bond of the H2C=CH2. On the other hand, ligands like N2 and CH4 are strongly influencing the geometry, as seen in the spectral signatures of the C2H5+···N2 and C2H5+···CH4, which correspond to the classical [H2CCH3]+. It was thus demonstrated that while the nonclassical C2H5+ is the global minimum on the PES of the free [C2,H5]+, the structure of the C2H5+ can be strongly influenced by the chemical properties of the environment.
Oxygen-centered radicals are important intermediates in photobiological, mechanistic and synthetic studies. The majority of precursors of reactive oxyl radicals are labile and thus delicate to handle. Therefore N-(alkoxy)-pyridinethiones and N-(Alkoxy)-thiazolethiones have attracted attention as "mild'' photochemical source of alkoxyl radicals, in the last few years. A disadvantage of the pyridine compounds, is their sensibility to daylight. Despite of their similarities, both molecules behave surprisingly different, if photolyzed in the absence of trapping reagents. The pyridinethione compounds undergo highly efficient radical chain reactions under such conditions while the corresponding thiazolethiones react surprisingly sluggish and give rise to several unwanted side products. The properties of both compounds should be understood and optimized in the frame of this work. Additionally new compounds should be suggested that can also be applied in the photochemical alkoxyl radical generation. Some background information about the generation and application of alkoxyl radicals is provided in chapter 2. Electronic excitations and UV/vis spectroscopy together with a description of quantum chemical approaches that are able to calculate such phenomena are outlined in chapter 3. Chapter 4 deals with the description of the vertical excitation spectra. During the validation CASSCF, CASPT2, TD-DFT and RI-CC2 were tested with respect to their ability to describe the vertical excitations in both compounds. The CASPT2 approach gives accurate descriptions of the electronic excitation spectra of all compounds. The time-dependent DFT results are very sensitive on the choice of the functional and a validation of the results should be always done. On the basis of these computations the spectroscopic visible absorption bands of both compounds were assigned to a pi-->pi* transition in the thiohydroxamic acid functionality. In chapter 5 the mechanism of the thermally and the photochemically induced N,O homolysis in both compounds is unveiled. The near UV-induced N,O homolysis will start from the S2 state. The expected relaxation from the S2- to the S1-state and the dissociation process is expected to be very fast in the case of the thiazolethione compound. The potential surfaces of the pyridine compound in contrast point to a slower N,O bond dissociation. Due to the resulting faster dissociation process the excess energy which results from the photochemical activation is quenched only to small amounts. The maximal possible excess energy of the fragments is lower and a quenching is much more likely in the case of the pyridinethione compounds. This explaines the different reactivities of both compounds. For the also already successfully applied precursor system N-(alkoxy)-pyridineones the computed dissociation paths show courses that clearly predict a slow bond dissociation process. Chapter 6 deals with the tuning of the initial excitation wave length of the known pyridinethiones und thiazolethiones. In the first part the effects of substituents on the thiazolethione heterocycle was examined. The UV/vis spectra of 4 and 5 substituted thiazolethiones can be interpreted like the spectrum of the parent compound. The second part of chapter 6 deals with the identification of a substitution pattern on the pyridine heterocycle which induces a blue shift of the photo active band. The computations showed that electron rich and electron poor substituents result the same effects on the electronic excitation spectra. These substituent effects are additive, but the steric orientation of the substituents has to be taken into account. Chapter 7 describes a computer aided design of new alkoxyl radical precursors. Combining the advantages of both compounds the radical formation should be initiated by an irradiation with light at about 350 nm, and the amount of side products during the radical formation process should be small. To achieve this 18 test candidates were obtained by a systematic variation of the parent compound of the thiazolethione precursor. To identify the promising new precursor systems a screening of the lower electronic excitations of all resulting 18 systems was performed with TD-DFT. For promising systems the N,O or P,O dissociation paths, respectively, were analyzed according to the developed model. N-(methoxy)-azaphospholethione and N-(methoxy)-pyrrolethione seem to be the most promising candidates. The computations predict a strong absorption at about 350 nm respectively 320 nm. Due to the amounts of maximal excess energy and the shapes of the potential surfaces of the N,O bond dissociation paths their reactivity should resemble more the behavior of the pyridinethiones.
Transmissible spongiform encephalopathies (TSEs) or prion diseases are a group of infectious neurodegenerative diseases that are associated with misfolding of the cellular form of the cellular prion protein (PrPC) into a disease associated conformer (PrPSc). No therapy for prion diseases is available at present. So far, anti-PrPC vaccination is hampered by immunological tolerance of the mammalian immune system to endogenous PrPC. The aim of this thesis was to set up a new vaccination strategy based on virus-like particles (VLP) to induce anti-PrPC antibody responses in PrPC-competent mice. In a first step it was assessed whether VLP have the capacity to induce antibody responses that are protective against conventional pathogens. For this purpose, VLP displaying the vesicular stomatitis virus-gylcoprotein (VLP-VSV) were generated and tested for their immunogenicity. Similarly to live vesicular stomatitis virus (VSV), replication deficient VLP-VSV induced T help-independent VSV neutralizing IgM responses that switched to the IgG subclass in a T help-dependent manner. Furthermore, type I IFN receptor (IFNAR) triggering only marginally affected VLP-VSV induced neutralizing IgM responses, whereas it was critically required to promote the IgG switch. The analysis of conditional knockout mice with a lymphocyte-specific IFNAR deletion revealed that IFNAR triggering of lymphocytes did not play a crucial role, neither upon VLP-VSV nor VSV immunization. Collectively, these data verified the high immunogenicity of VLP. Therefore, in a next step VLP were generated displaying the C-terminal half of PrP (residues 121-231aa) fused to the platelet derived growth factor receptor (PDGFR) transmembrane region (VLP-PrPD111) for anti-PrPC immunization. On the surface of such retroparticles, PrPC was expressed at high levels as determined by electron microscopy. VLP-PrPD111 immunization of Prnp-deficient (Prnp0/0) mice resulted in antibody response specifically binding the cellular form of PrPC. Upon intravenous injection of wild-type mice, high PrPC-specific IgM responses were induced, whereas the T cell-dependent switch from the IgM to the IgG subclass was less pronounced. As a consequence, anti-PrPC titers were rather short-lived. The impaired subclass switch was probably related with host T cell tolerance to endogenous PrPC. Attempts to increase anti-PrPC IgG responses in wild-type mice via administration of VLP-PrPD111 emulsified in various different adjuvants failed. Nevertheless, in single individuals low IgG antibodies were induced after immunization of VLP-PrPD111 emulsified in CFA. To circumvent T cell tolerance in wild-type mice, a multitude of different immunization strategies was tested, including priming and boosting protocols with different types of VLP or VLP expressing PrPC together with foreign T helper epitopes. Overall, those efforts did not improve anti-PrPC IgG responses in wild-type mice. Interestingly, anti-PrPC antibodies induced in Prnp0/0 mice reduced PrPSc levels in prion infected cell cultures, whereas serum of vaccinated wild-type mice did not. To assess the protective capacity of VLP-PrPD111 induced immune responses, vaccinated wild-type mice were infected with scrapie (RML 5.0). Unfortunately, vaccinated mice did not show a significant delay in the onset of scrapie. In a last part of the thesis it was studied whether in the absence of T cell help activated “memory” B cells were able to produce anti-PrPC specific antibodies. To address this question, PrPC-specific memory B cells were sorted from vaccinated Prnp0/0 mice and adoptively transferred into wild-type recipient mice. Upon VLP-PrPD111 challenge, no PrPC-specific IgG titers were induced in the recipients. Nevertheless, several VLP-PrPD111 challenged recipient mice were protected against scrapie infection. In conclusion, VLP were characterized as highly immunogenic vaccines that were used to elucidate various questions concerning adaptive immune response and basic mechanisms of PrPC-specific tolerance vs. immunity. Remarkably, VLP-PrPD111 was able to induce native PrPC-specific antibodies in wild-type mice but major difficulties associated with PrPC-specific tolerance made efficacious scrapie vaccination impossible. New vaccination approaches are being tested to overcome these limitations.
Directed cortical actin assembly is the driving force for intercellular adhesion. Vasodilator-stimulated phosphoprotein (VASP) participates in actin-fiber formation and VASP activity is regulated by phosphorylations. We screened for endothelial cell proteins, which bind to VASP dependent on its phosphorylation status. Differential proteomics identified αII-spectrin as novel VASP-interacting protein. αII-spectrin binds to the triple GP5-motif in VASP via its SH3 domain. cAMP-dependent protein kinase-mediated VASP phosphorylation at Ser157 inhibits αII-spectrin/VASP complex formation. VASP becomes dephosphorylated upon formation of cell-cell contacts and in confluent but not in sparse endothelial cells αII-spectrin colocalizes with non-phosphorylated VASP at cell-cell junctions. Ectopic expression of the αII-spectrin SH3 domain fused to claudin-5 translocates VASP to cell-cell contacts and is sufficient to initiate the formation of cortical actin cytoskeletons. αII-spectrin SH3 domain overexpression stabilizes cell-cell contacts and decreases endothelial permeability. Conversely, permeability of VASP-deficient endothelial cells is elevated. In a skin edema model, microvascular leakage is increased in VASP-deficient over wild-type mice. We propose that αII-spectrin/VASP complexes regulate cortical actin cytoskeleton assembly with implications for formation of endothelial cell-cell contacts and regulation of vascular permeability.
A series of experiments was conducted in order to investigate motor contributions to learning highly skilled action sequences in contrast to sensory contributions. Experiments 1–4 made use of a bimanual-bisequential variant of the serial reaction time task: Presentation of imperative stimuli was arranged such that participants’ left-hand and right-hand responses followed different sequences independently of one another, thus establishing a compound sequence spanning both hands. At least partly independent learning of the two concurrently implemented hand-related sequences was demonstrated after extensive practice under condi-tions of both simultaneous (Experiments 1 & 2) and alternating (Experiments 3 & 4) stimulus presentation and responding. It persisted when there was only one imperative stimulus for presenting both hand-related sequences (Experiments 2–4) instead of two separate imperative stimuli (Experiments 1 & 2), one for each sequence, even when the hand-related sequences were correlated and massive integrated learning of the compound sequence occurred (Ex-periment 4). As for the nature of the independently acquired sequence representations, trans-ferable sequence knowledge was acquired only when there was a separate imperative stimulus for each sequence (Experiments 1 & 2) but not otherwise (Experiments 2–4). The most likely stimulus-based representations which allow for intermanual transfer can be regarded as sen-sory components of highly skilled action sequences, whereas motor components can be con-sidered as being reflected in effector-specific, non-transferable sequence knowledge. The same decomposition logic applies to transferable and non-transferable sequence knowledge observed under conditions of unimanual practice of a single sequence (Experiments 6 & 7). The advantage of practicing a key press sequence with fingers of one hand as opposed to practicing it with fingers of both hands (Experiment 5) also implicates a motor component as the two assignments were equivalent in all other respects. Moreover, Experiments 6 and 7 showed that hand-specific sequence knowledge can develop after relatively little practice (as little as approximately 120 sequence repetitions). Presumably, this occurs especially in tasks with particularly pronounced requirements for coarticulation between consecutive finger movements. In sum, the present series of experiments provides compelling evidence for an effector-specific component of sequence learning. Albeit relatively small in size, it emerged consistently under various conditions. By contributing to the refinement of sequential action execution it can play a role in attaining high levels of performance.
Overlay networks establish logical connections between users on top of the physical network. While randomly connected overlay networks provide only a best effort service, a new generation of structured overlay systems based on Distributed Hash Tables (DHTs) was proposed by the research community. However, there is still a lack of understanding the performance of such DHTs. Additionally, those architectures are highly distributed and therefore appear as a black box to the operator. Yet an operator does not want to lose control over his system and needs to be able to continuously observe and examine its current state at runtime. This work addresses both problems and shows how the solutions can be combined into a more self-organizing overlay concept. At first, we evaluate the performance of structured overlay networks under different aspects and thereby illuminate in how far such architectures are able to support carrier-grade applications. Secondly, to enable operators to monitor and understand their deployed system in more detail, we introduce both active as well as passive methods to gather information about the current state of the overlay network.
Background: The frequency of the most observed cancer, Non Hodgkin Lymphoma (NHL), is further rising. Diffuse large B-cell lymphoma (DLBCL) is the most common of the NHLs. There are two subgroups of DLBCL with different gene expression patterns: ABC (“Activated B-like DLBCL”) and GCB (“Germinal Center B-like DLBCL”). Without therapy the patients often die within a few months, the ABC type exhibits the more aggressive behaviour. A further B-cell lymphoma is the Mantle cell lymphoma (MCL). It is rare and shows very poor prognosis. There is no cure yet. Methods: In this project these B-cell lymphomas were examined with methods from bioinformatics, to find new characteristics or undiscovered events on the molecular level. This would improve understanding and therapy of lymphomas. For this purpose we used survival, gene expression and comparative genomic hybridization (CGH) data. In some clinical studies, you get large data sets, from which one can reveal yet unknown trends. Results (MCL): The published proliferation signature correlates directly with survival. Exploratory analyses of gene expression and CGH data of MCL samples (n=71) revealed a valid grouping according to the median of the proliferation signature values. The second axis of correspondence analysis distinguishes between good and bad prognosis. Statistical testing (moderate t-test, Wilcoxon rank-sum test) showed differences in the cell cycle and delivered a network of kinases, which are responsible for the difference between good and bad prognosis. A set of seven genes (CENPE, CDC20, HPRT1, CDC2, BIRC5, ASPM, IGF2BP3) predicted, similarly well, survival patterns as proliferation signature with 20 genes. Furthermore, some bands could be associated with prognosis in the explorative analysis (chromosome 9: 9p24, 9p23, 9p22, 9p21, 9q33 and 9q34). Results (DLBCL): New normalization of gene expression data of DLBCL patients revealed better separation of risk groups by the 2002 published signature based predictor. We could achieve, similarly well, a separation with six genes. Exploratory analysis of gene expression data could confirm the subgroups ABC and GCB. We recognized a clear difference in early and late cell cycle stages of cell cycle genes, which can separate ABC and GCB. Classical lymphoma and best separating genes form a network, which can classify and explain the ABC and GCB groups. Together with gene sets which identify ABC and GCB we get a network, which can classify and explain the ABC and GCB groups (ASB13, BCL2, BCL6, BCL7A, CCND2, COL3A1, CTGF, FN1, FOXP1, IGHM, IRF4, LMO2, LRMP, MAPK10, MME, MYBL1, NEIL1 and SH3BP5; Altogether these findings are useful for diagnosis, prognosis and therapy (cytostatic drugs).
The main focus of this work was to get a deeper understanding of the relationship between the structure of sol-gel films, their densification and their macroscopic cracking. First of all titania was chosen as model system. Therefore a synthesis route starting from the preparation of long-term stable amorphous redissoluble precursor powders based on acetylacetone as chelate ligand was utilized. The solubility and stability of the powders in various solvents can be determined by chemical synthesis and technological parameters. When dissolved in a solvent mixture of ethanol and 1,5-pentanediol, thin films can be easily prepared by dip-coating technique. Thereby the quality of the titania films enormously depends on the calcinations temperature and the solvent mixture is used. In order to investigate the influence of different solvents and solvent mixtures on the microstructure and densification of the precursors, the coating solutions were stripped off (sol powder) and analyzed as function of annealing temperature. It was pointed out that a high densification rate caused by the addition of 1,5-pentanediol, results in dense microstructure with trapped residual carbon. These impurities can retard the phase transformation of anatase to rutile. The analysis of so-called “film powders” scraped off multiple dip-coated substrates provides valuable information on the effect of air moisture and unidirectional densification during drying and aging on the structure of thin films. The high surface-to-volume ratio and access to air moisture determine the chemical composition of the as-prepared film, which controls shrinkage, crystallization and defect structure of the coatings. Further it was shown, that drying as a thin film results in the formation of closed pores and much denser microstructure than the respective sol powder. Without the addition of 1,5-pentanediol all –OEt moieties undergo hydrolysis reactions, which causes the formation of a rigid network. The presence of 1,5-pentanediol retards this hydrolysis reactions and provides some network plasticity. Generally the microstructure of thin films is comparatively close to the microstructure of the film powders. The addition of 1,5-pentandiol prevents hydrolysis and condensation reactions as like in the film powders. However even at 700 °C, thin films never transform to rutile, which was attributed to the tensile stresses in thin films. In thin films and in film powders as well a comparable amount of closed pores are formed during annealing. Further it was shown that most of the thin sol-gel films investigated form a dense crust on their tops during annealing. This explains why crack free films exhibit only closed pores. However, when cracks appear during thin film shrinkage in the coating, this crust is burst, which generates open porosity. The defect density in the coatings was determined by an automated analysis of surface images. The crack formation and quantity can be directly referred to tensile stresses in the coatings, which arise from hydrolysis and condensation during thin film drying and aging. Therefore when 1,5-pentanediol is added to the sol, thin film cracking was avoided, because hydrolysis and condensation reactions are retarded, which preserves a higher network flexibility. Furthermore the crack formation was significantly influenced by the atmospheric humidity that was used during the coating process, which was explained by different drying and condensation rates. Under certain chemical starting conditions water soluble precursor powders can be also obtained. In general the observations made with the water based coating solutions are mostly in agreement with the former results based on ethanol based coating solutions. For example the high surface-to-volume ratio of film powders compared to sol powders also significantly enhances film drying and densification. The addition of 1,5-pentanediol also clearly contributes to their densification behavior and phase evolution. As seen before in the case of ethanol based coatings, 1,5-pentanediol enhances the stability towards hydrolysis and condensation reactions and preserves some network plasticity. Therefore coatings prepared without the addition of 1,5-pentanediol already form cracks during film drying and aging because of tensile stresses. Thus, the addition of 1,5-pentanediol results in a reduction/prevention of crack formation. Nevertheless some differences were observed, i.e. the critical single coating film thickness of ethanol based coatings is nearly twice that of water based coatings. This was explained by the different surface tensions of the basis solvents, which during thin film drying causes significantly higher capillary forces and tensile stresses in water based coatings. When acetylacetone is replaced by triethanolamine as chelating ligand for titanium also re-dissolvable precursor powders can be synthesized. The film powders combine a high hydrolytic stability of the precursor with sufficient intermediate network flexibility. The different type of organics changes the drying and densification behavior: i.e. in contrast to film powders obtained from acetylacetone based precursor powders the structure of triethanolamine based film powders is unaffected by the thin film drying process. This high hydrolytic stability and plasticity of this precursor allows the preparation of defect free coatings up to single film thickness of 300 nm. However triethanolamine based thin films present at intermediary annealing temperatures a distinctively different microstructure compared to acetylacetone based films. The general validity of the conclusions was proved on the basis of zirconia coatings that were also prepared by the use of re-dissolvable precursor powders. In principle all conclusions concerning the interconnection of precursor chemistry, film formation, densification and structure were transferable to the respective zirconia coatings. Differences mainly arise only from differential material properties i.e. bulk density. Finally, it has been pointed out that the findings obtained on the densification behavior of thinsol-gel films are also a valuable tool for improved explanations of other important scientific questions concerning sol-gel films, i.e. scratch resistance of sol-gel coatings, fiber -bridging and – degradation of sol-gel coated fibers.
In a first part the bilayer Heisenberg Model and the 2D Kondo necklace model are studied. Both models exhibit a quantum phase transition between an ordered and disordered phase. The question is addressed to the coupling of a single doped hole to the critical fluctuations. A self-consistent Born approximation predicts that the doped hole couples to the magnons such that the quasiparticle residue vanishes at the quantum critical point. In this work the delicate question about the fate of the quasiparticle residue across the quantum phase transition is also tackled by means of large scale quantum Monte Carlo simulations. Furthermore the dynamics of a single hole doped in the magnetic background is investigated. In the second part an analysis of the spiral staircase Heisenberg ladder is presented. The ladder consists of two ferromagnetic coupled spin-1/2 chains, where the coupling within the second chain can be tuned by twisting the ladder. Within this model the crossover between an ungapped spin-1/2 system and a gapped spin-1 system can be studied. In this work the emphasis is on the opening of the spin gap with respect to the ferromagnetic rung coupling. It is shown that there are essential differences in the scaling behavior of the spin gap depending on the twist of the model. Moreover, by means of the string order parameter it is shown, that the system remains in the Haldane phase within the whole parameter range although the spin gap scales differently. The tools which are used for the analyses are mainly large scale quantum Monte Carlo methods, but also exact diagonalization techniques as well as mean field approaches.
In this study, murine ES cells and DT40 B cells were used in parallel to disrupt the Nfatc1 gene and to study the function of individual 6 Nfatc1 isoforms, especially the function of highly inducible NFATc1/aA.We found that the short isoform NFATc1/aA protects DT40 B cells against apoptosis while the long isoform NFATc1/aC appears to enforce apoptosis. DNA microarray studies have shown that in NFATc1" DT40 B cells expressing ectopically human NFATc1/aA, the pkc-theta gene is several fold stronger expressed as in wild type cells. Our results of EMSA (Electrophoretic Mobility Shift Assays) and ChIP (chromatin immuno-precipitation) experiments demonstrated the binding of NFATc1/aA to the pkc-theta promoter in vitro and in vivo. NF-kappa B was also found to bind to the NFATc1 P1-promoter in vitro and in vivo. These data suggest and further prove that NF-kappa B contributes to the induction of the NFATc1 P1 promoter upon activation of T cells. So, NFATc1/aA and NF-kappa B were found to cross-talk in the transcriptional upregulation of their target genes, such as the IL-2 gene and the Nfatc1 gene itself, at multiple steps upon induction of apoptosis. While the pro-apoptotic mechanism of NFATc1s long isoform(s) remains unclear, its corresponding “death partners” are worth further studies. The elucidation of functional roles of NFATc1s short or long isoforms in the control of apoptosis of lymphocytes helps to understand apoptosis regulation, and thereby, the fate of lymphocytes.
Processes of the Earth’s surface occur at different scales of time and intensity. Climate in particular determines the activity and seasonal development of vegetation. These dynamics are predominantly driven by temperature in the humid mid-latitudes and by the availability of water in semi-arid regions. Human activities are a modifying parameter for many ecosystems and can become the prime force in well-developed regions with an intensively managed environment. Accounting for these dynamics, i.e. seasonal dynamics of ecosystems and short- to long-term changes in land-cover composition, requires multiple measurements in time. With respect to the characterization of the Earth surface and its transformation due to global warming and human-induced global change, there is a need for appropriate data and methods to determine the activity of vegetation and the change of land cover. Space-borne remote sensing is capable of monitoring the activity and development of vegetation as well as changes of the land surface. In many instances, satellite images are the only means to comprehensively assess the surface characteristics of large areas. A high temporal frequency of image acquisition, forming a time series of satellite data, can be employed for mapping the development of vegetation in space and time. Time series allow for detecting and assessing changes and multi-year transformation processes of high and low intensity, or even abrupt events such as fire and flooding. The operational processing of satellite data and automated information-extraction techniques are the basis for consistent and continuous long-term product generation. This provides the potential for directly using remote-sensing data and products for analyzing the land surface in relation to global warming and global change, including deforestation and land transformation. This study aims at the development of an advanced approach to time-series generation using data-quality indicators. A second goal focuses on the application of time series for automated land-cover classification and update, using fractional cover estimates to accommodate for the comparatively coarse spatial resolution. Requirements of this study are the robustness and high accuracy of the approaches as well as the full transferability to other regions and datasets. In this respect, the developments of this study form a methodological framework, which can be filled with appropriate modules for a specific sensor and application. In order to attain the first goal, time-series compilation, a stand-alone software application called TiSeG (Time Series Generator) has been developed. TiSeG evaluates the pixel-level quality indicators provided with each MODIS land product. It computes two important data-availability indicators, the number of invalid pixels and the maximum gap length. Both indices are visualized in time and space, indicating the feasibility of temporal interpolation. The level of desired data quality can be modified spatially and temporally to account for distinct environments in a larger study area and for seasonal differences. Pixels regarded as invalid are either masked or interpolated with spatial or temporal techniques.
In a nice assay published in Nature in 1993 the physicist Richard God III started from a human observer and made a number of witty conclusions about our future prospects giving estimates for the existence of the Berlin Wall, the human race and all the rest of the universe. In the same spirit, we derive implications for "the meaning of life, the universe and all the rest" from few principles. Adams´ absurd answer "42" tells the lesson "garbage in / garbage out" - or suggests that the question is non calculable. We show that experience of "meaning" and to decide fundamental questions which can not be decided by formal systems imply central properties of life: Ever higher levels of internal representation of the world and an escalating tendency to become more complex. An observer, "collecting observations" and three measures for complexity are examined. A theory on living systems is derived focussing on their internal representation of information. Living systems are more complex than Kolmogorov complexity ("life is NOT simple") and overcome decision limits (Gödel theorem) for formal systems as illustrated for cell cycle. Only a world with very fine tuned environments allows life. Such a world is itself rather complex and hence excessive large in its space of different states – a living observer has thus a high probability to reside in a complex and fine tuned universe.
This thesis deals with the isolation and structural elucidation of bioactive naphthylisoquinoline alkaloids and related analogs. The mode of action of the antiplasmodial activity exhibited by the naphthylisoquinoline alkaloids was explored and compared to that of the antimalarial drug chloroquine. Furthermore, the phase 1 and 2 metabolism of dioncophyllines A and C and dioncopeltine A were investigated. In detail the following results have been obtained: • From the leaves of the recently discovered East African liana A. tanzaniensis six naphthylisoquinoline alkaloids were isolated. • The leaves of a botanical yet undescribed Ancistrocladus species, collected by Prof. Dr. V. Mudogo in the Democratic Republic of Congo in the habitat Yeteto near the town Ikela, were analyzed for naphthylisoquinoline alkaloids for the first time. The isolation work led to the first identification of an N,C-coupled naphthyldihydroisoquinoline alkaloid; ancistrocladinium B. Phytochemical investigation of the roots of the Congolese Ancistrocladus species (habitat Yeteto), , afforded five new derivatives of known naphthylisoquinoline alkaloids, namely 5'-O-demethylhamatine, 5'-O-demethylhamatinine, 6-O-demethylancistroealaine A, 6,5'-O,O-didemethylancistroealaine A, and 5-epi-6-O-methylancistrobertsonine A, along with six known naphthylisoquinoline alkaloids. • The antiplasmodial activity guided purification of 60Co irradiated samples containing commercially available naphthylisoquinoline related substances, afforded the isolation of the irradiation products 3,4-dihydro-1-isoquinolinone, 3,4-dihydro-1-isoquinolineamine, and 1,2,3,4-tetrahydro-1,2-diazirino-isoquinoline. The compounds were found to be more active than the starting material, although only exhibiting weak antiplasmodial activity against P. falciparum. • The effect on the absorption spectrum of FPIX due to complex formation with the naphthylisoquinoline alkaloids dioncophyllines A and C, dioncopeltine A korupensamine A, and ancistrocladine was examined by a titration study. Job's plot analyses by UV-spectroscopy determined the stoichiometry for the complex formation of FPIX and naphthylisoquinoline alkaloids to be 2:1. Furthermore, the dissociation constants for the complexation with FPIX were determined for each of the naphthylisoquinoline alkaloids investigated. Dioncophylline C and dioncopeltine A were found to possess dissociation constants, which are comparable to the one reported for the antimalarial drug chloroquine. The ability of ESI to transfer noncovalent solution-phase assemblies intact into the gas phase, was conducted on solution mixtures of naphthylisoquinoline alkaloid and FPIX, as well as on mixtures of chloroquine and FPIX. The mass spectrometry analyses revealed several peaks, which corresponded to the complex formation of FPIX to the respective ligands investigated. The most interesting results obtained were the detection of peaks corresponding to the complex formation between a chelated dimer of FPIX and dioncophylline Cand of peaks corresponding to a double protonated tetramer of FPIX – consisting of two chelated -oxo dimers of FPIX – in complex formation with two molecules of chloroquine. • Two phase 1 metabolism products of dioncophylline A were identified. Coelution in combination with HPLC-MS/MS, NMR, and CD investigations assigned the major metabolic product as 5'-O-demethyldioncophylline A. The minor metabolic product was only present in small amounts, which disabled an unambiguous structural characterization of the compound. However, as deduced from the mass spectrometry analyses and exclusion of a possible metabolic oxidation product by coelution with authentic reference material, the metabolite should possess a 4-hydroxylated isoquinoline portion and is assumed to be represented by structure. Dioncophylline C and dioncopeltine A were found to be stable to phase 1 metabolism reactions caused by rat liver microsomes.
The Transforming Growth Factor (TGF) superfamily of cytokines and their serine/threonine kinase receptors play an important role in the regulation of cell division, differentiation, adhesion, migration, organization, and death. Smad proteins are the major intracellular signal transducers for the TGF receptor superfamily that mediate the signal from the membrane into the nucleus. Bone Morphogenetic Protein-4 (BMP-4) is a representative of the TGF superfamily, which regulates the formation of teeth, limbs and bone, and also plays a role in fracture repair. Binding of BMP-4 to its receptor stimulates phosphorylation of Smad1, which subsequently recruits Smad4. A hetero-oligomeric complex consisting of Smad1 and Smad4 then translocates into the nucleus and regulates transcription of target genes by interacting with transcription factors. Although the individual steps of the signaling cascade from the receptor to the nucleus have been identified, the exact kinetics and the rate limiting step(s) have remained elusive. Standard biochemical techniques are not suitable for resolving these issues, as they do not offer sufficiently high sensitivity and temporal resolution. In this study, advanced optical techniques were used for direct visualization of Smad signaling in live mammalian cells. Novel fluorescent biosensors were developed by fusing cyan and yellow fluorescent proteins to the signaling molecules Smad1 and Smad4. By measuring Fluorescence Resonance Energy Transfer (FRET) between the two fluorescent proteins, the kinetics of BMP/Smad signaling was unraveled. A rate-limiting delay of 2 - 5 minutes occurred between BMP receptor stimulation and Smad1 activation. A similar delay was observed in the complex formation between Smad1 and Smad4. Further experimentation indicated that the delay is dependent on the Mad homology 1 (MH1) domain of Smad1. These results give new insights into the dynamics of the BMP receptor – Smad1/4 signaling process and provide a new tool for studying Smads and for testing inhibitory drugs.
During the last few years an increasing number of physiological processes in plants have been shown to be regulated by NO. NO plays important roles in growth and development, plant disease resistance, abiotic stress, and in above and underground plant organs. In recent years several enzymatic pathways and few non-enzymatic pathways were proposed for nitric oxide production in plants. The major goal of this work was to quantify NO production by plants and especially by roots, and to identify the enzymes responsible for NO production. As a major method, NO production by roots was followed through on-line measurement of NO emission into the gas phase by chemiluminescence (= direct chemiluminescence), and also by indirect chemiluminescence where trace amounts of oxidized products like NO2- and NO3- can be easily measured. Plants used were tobacco wild-type (N. tabacum cv Xanthi or cv Gatersleben), NR-free mutants grown on ammonium in order to prevent NR induction, plants grown on tungstate to inhibit synthesis of functional MoCo-enzymes, and a NO-overproducing nitrite reductase (NiR)-deficient transformant as well as barley, rice and pea. Induction of a hypersensitive response (HR) in tobacco leaves was achieved by using avirulent Pseudomonas syringae pv phaseolicola. At oxygen concentrations of <1%, even completely nitrate reductase (NR)-free root tissues reduced added nitrite to NO, indicating that in roots, NR was not the only source for nitrite-dependent NO formation. By contrast, NR-free leaf slices were not able to reduce nitrite to NO. Root NO formation was blocked by inhibitors of mitochondrial electron transport (Myxothiazol and SHAM), whereas NO formation by NR containing leaf slices was insensitive to the inhibitors. Consistent with that, mitochondria purified from roots, but not those from leaves, reduced nitrite to NO at the expense of NADH. The inhibitor studies suggest that, in root mitochondria, both terminal oxidases participate in NO formation, and they also suggest that even in NR-containing roots, a large part of the reduction of nitrite to NO was catalysed by mitochondria, and less by NR. The differential capacity of root and leaf mitochondria to reduce nitrite to NO appears to be common among higher plants, since it was observed with Arabidopsis, barley, pea, and tobacco. Nitrite and NADH consumption by mitochondria were also measured. Anaerobic, nitrite-dependent NO emission was exclusively associated with the membrane fraction, without participation of matrix components. It was also examined whether root mitochondria and mitochondrial membranes produce nitric oxide (NO) exclusively by reduction of nitrite or also via a nitric oxide synthase (NOS),- and to what extent direct NO measurements could be falsified by NO oxidation. In addition to chemiluminescence, Diaminofluoresceins (DAF) were used as an NO indicators for comparison. In air, mitochondria apparently produced no nitrite-dependent NO, and no NOS activity was detected by direct or indirect chemiluminescence. In contrast, with DAF-2 and DAR-4M an L-arginine-dependent fluorescence increase took place. However, the response of this apparent NOS activity to inhibitors, substrates and cofactors was untypical when compared with commercial iNOS and is considered an artefact. With iNOS, about 2/3 of the NO were oxidized to (nitrite + nitrate). Mitochondria also appear to consume NO without increasing oxidation to (nitrite+ nitrate). We therefore assume formation of NO to a volatile intermediate (eventually N2O3). It was recently shown that the hypersensitive response (HR) of tobacco triggered by the fungal elicitor cryptogein occurred independent of the presence or absence of nitrate reductase (NR). One conclusion was that NR-dependent NO formation played no role in the HR. Here we present evidence that the described scenario may be specific for cryptogein. Pseudomonas syringae pv. phaseolicola was infiltrated into tobacco leaves from WT plant and from the NiR-deficient NO-overproducing clone 271, grown either on nitrate or ammonium. Lesion development as well as bacterial growth and sugar concentrations in leaves and in the leaf apoplast was monitored. Lesion development was positively and bacterial growth was negatively correlated with nitrate nutrition and eventually with NO formation. Bacterial growth was positively correlated with ammonium nutrition and apoplastic sugar concentrations. Total (free and conjugated) SA content were always drastically increased by bacterial infection, but there was no clear correlation with NO production. In the presence of cryptogein, Pseudomonas growth was drastically reduced. This shows that the assumed interdependence of bacterial growth, NO production and the HR is complex and not unifactorial.
Inhibition of Nuclear Import of Calcineurin Prevents the Development of Myocardial Hypertrophy
(2007)
The Calcineurin/NFAT signaling cascade is a crucial transducer of cellular function. It has recently been emerged that in addition to the transcription factor NFAT, the phosphatase Calcineurin is also translocated to the nucleus. Our traditional understanding of Calcineurin activation via sustained high Ca2+-levels was also advanced by recent findings from this working group (AG Ritter), which showed that Calcineurin is activated by proteolysis of the C-terminal autoinhibitory domain. This leads to the constitutive activation and nuclear translocation of Calcineurin. Therefore, Calcineurin is not only responsible for dephosphorylating of NFAT in the cytosol thus enabling its nuclear import, its presence in the nucleus is also significant in ensuring the full transcriptional activity of NFAT. Formation of complexes between transcription factors and DNA regulates the transcriptional process. Therefore, the time that transcription factors remain nuclear is a major determinant of transcriptional activity. The movement of proteins over ~40 kDa into and out of the nucleus is governed by the nuclear pore complex (NPC). Transcription factors and enzymes that regulate the activity of these proteins are shuttled across the nuclear envelope by proteins that recognize nuclear localization signals (NLS) and nuclear export signals (NES) within the amino acid sequence of these transcription factors. In this study, the precise mechanisms of Calcineurin nuclear import and export were identified. Additionally to the nuclear localization sequence (NLS) and the nuclear export sequence (NES) within the sequence of Calcineurin, the respective nuclear cargo proteins, responsible for nuclear import, Importinβ1, and for nuclear export, CRM1, were identified. Inhibition of the Calcineurin/importin interaction by a competitive peptide, called Import Blocking Peptide (IBP), which mimicked the Calcineurin NLS, prevented nuclear entry of Calcineurin. A non-inhibitory control peptide showed no effect. Using this approach, it was able to prevent the development of myocardial hypertrophy. In Angiotensin II stimulated cardiomyocytes, both the transcriptional and the translational level was suppressed. Additionally, cell size and expression of Brain natriuretic peptide (as molecular marker for hypertrophy) were significantly reduced compared untreated controls. IBP worked dose-dependent, but did not affect the Calcineurin phosphatase activity. In conclusion, Calcineurin is not only capable of dephosphorylating NFAT, thus enabling its nuclear import, its presence in the nucleus is also important for full NFAT transcriptional activity. Using IBP to prevent the nuclear import of Calcineurin is a completely new approach to prevent the development of myocardial hypertrophy.
Spinal muscular atrophy with respiratory distress type 1 (SMARD1) is an autosomal recessive neuronal disorder in infants. The disease is marked by early onset of respiratory distress and predominantly distal muscle weakness, as consequences of diaphragmatic paralysis and progressive degeneration of  motor neurons in the spinal cord, respectively. Genetically, SMARD1 is caused by mutations in the single gene encoding Immunoglobulin µ-Binding Protein 2 (IGHMBP2). Despite the tissue specific degeneration observed in SMARD1 patients, the disease gene product IGHMBP2 is ubiquitously expressed in human and mouse tissues. Therefore, SMARD1 appears to be a motor neuron disease caused by the malfunction of a “housekeeping” protein, rather than a neuron specific factor. IGHMBP2 harbors an N-terminal DEXDc-type helicase/ATPase domain and has been classified as a member of the Superfamily 1 (SF1) of helicases. This protein has been assigned to various cellular activities such as DNA replication, pre-mRNA splicing and transcription. However its precise function in either process has remained elusive. The study presented here aimed at the enzymatic characterization of IGHMBP2, the identification of a specific cellular process to which IGHMBP2 is connected and the role of this factor in the pathophysiology of SMARD1. As a first step toward this end, a two-step purification strategy was established, which enabled the large-scale purification of properly folded and enzymatically active IGHMBP2. In vitro enzymatic studies using this recombinant protein defined IGHMBP2 as an ATP-dependent helicase that catalyzes unwinding of duplices composed of either DNA or RNA in a 5’→3’ direction. In contrast to previous reports, indirect immunofluorescence studies revealed a predominantly cytoplasmic localization of IGHMBP2. Size-fractionation studies and affinity-purification experiments further showed that IGHMBP2 is part of an RNase-sensitive macromolecular complex, which was identified as the ribosome. Interestingly, IGHMBP2 was abundantly detected in both subunits as well as to 80S ribosomes but only in small amounts in actively translating polysomes. These data strongly point to a role of IGHMBP2 in ribosomes-associated gene regulation control, such as in mRNA stabilization or mRNA translation. However, its precise function in those pathways remains to be identified. The biochemical and enzymatic characterization of IGHMBP2 allowed for the first time insights into the pathomechanism of SMARD1. SMARD1-causing pathogenic IGHMBP2 variants were investigated for their enzymatic activities and interaction with ribosomal subunits. Interestingly, among all missense mutations that have been tested thus far, none obstructs association with ribosomal subunits. However, these mutants exhibit specific defects in either the ATPase or RNA helicase activity or both. The data suggest that defects in the enzymatic activity of IGHMBP2 directly correlate with the pathogenesis of SMARD1. Furthermore, these data also raise the possibility that the disease SMARD1 is caused by alterations in the cellular translation machinery.
The importance of olfactory versus contact cues for host plant recognition was investigated in the tortoise beetle Cassida canaliculata Laich. (Coleoptera: Chrysomelidae), which is strictly monophagous on meadow sage. The reaction of adult beetles to olfactory and contact host cues was tested using three bioassays (locomotion compensator, six-chamber-olfactometer, stem arena') to account for different behavioral contexts. Bioassay-guided fractionation of plant extracts was elaborated to characterize the nature of contact stimuli. The beetles were only slightly attracted to odors from small amounts of leaf material. However, when contact cues were provided additionally, the beetles showed strong preferences for samples of their host plant over controls. Bioassay-guided fractionation led to isolation of at least two non-polar contact stimuli acting in concert that are sufficient for host plant identification in C. canaliculata.
1. Host plant finding in walking herbivorous beetles is still poorly understood. Analysis of small-scale movement patterns under semi-natural conditions can be a useful tool to detect behavioural responses towards host plant cues. 2. In this study, the small-scale movement behaviour of the monophagous leaf beetle Cassida canaliculata Laich. (Coleoptera: Chrysomelidae) was studied in a semi-natural arena (r = 1 m). In three different settings, a host (Salvia pratensis L., Lamiales: Lamiaceae), a non-host (Rumex conglomeratus Murr., Caryophyllales: Polygonaceae), or no plant was presented in the centre of the arena. 3. The beetles showed no differences in the absolute movement variables, straightness and mean walking speed, between the three settings. However, the relative movement variables, mean distance to the centre and mean angular deviation from walking straight to the centre, were significantly smaller when a host plant was offered. Likewise, the angular deviation from walking straight to the centre tended to decline with decreasing distance from the centre. Finally, significantly more beetles were found on the host than on the non-host at the end of all the trials. 4. It is concluded that C. canaliculata is able to recognise its host plant from a distance. Whether olfactory or visual cues (or a combination of both) are used to find the host plant remains to be elucidated by further studies.
Pathogenic relevance of autoantibodies to type XVII collagen from pemphigoid gestationis patients
(2007)
Pemphigoid gestationis (PG) and bullous pemphigoid (BP) are subepidermal autoimmune blistering diseases characterized by self-reactive T and B cells specific for the transmembrane hemidesmosomal protein type XVII collagen/BP180. Major T and B cell epitopes are located within the immunodominant 16th non-collagenous domain A (NC16A) of type XVII collagen. It has been suggested that pathogenically relevant autoantibodies also bind to this immunodominant region. The aim of this study was to map the epitopes targeted by blister-inducing human autoantibodies. For this purpose, we used an in vitro model of autoantibody-induced leucocyte-dependent dermal-epidermal separation. In contrast to the majority of patients with BP (7 of 10), preadsorption against a recombinant form of the NC16A region abolished the blister-inducing potential of autoantibodies from all PG patients tested (n=5). Using overlapping synthetic peptides, we demonstrate that PG autoantibodies bind to 2 defined epitopes within the NC16A region (aa 500-514 and aa 511-523). Preadsorption using an affinity matrix containing these two epitopes completely abolished dermal-epidermal separation induced by PG autoantibodies (in 8 of 9 patients). These findings provide new insights into the pathogenesis of pemphigoid diseases and should prove helpful for the development of an antigen-specific immunoadsorption therapy in PG.
The present work deals with the synthesis and the investigation of the photophysical properties of covalently constructed calix[4]arene–perylene bisimide dye arrays containing various PBI units. The obtained conjugates are characterized with respect towards their application in a new, zigzag-type architecture of artificial light-harvesting systems. For this purpose, orange (core-unsubstituted), red (6,7,11,12-tert-butylphenoxy-functionalized) and green (1,7-pyrrolidino-substituted) perylene bisimide building blocks have been attached to the calix[4]arene scaffold. First, the monochromophoric reference systems have been studied, and second, the photophysical properties of a comprehensive series of newly synthesized, multichromophoric calix[4]arene–perylene bisimide conjugates showing efficient energy transfer processes between the individual dye subunits have been investigated. Furthermore, a series of bichromophoric compounds containing identical chromophoric units has been obtained. Towards this goal, a variety of spectroscopic techniques such as UV/vis absorption, steady state and time-resolved fluorescence emission, and femtosecond transient absorption spectroscopy as well as a spectrotemporal analysis of the obtained data has been applied. This work presents a new concept for an artificial light-harvesting system positioning the dye units by means of calix[4]arene spacers along a zigzag chain. The investigations start with the syntheses and optical properties of the monochromophoric building blocks and result in an elaborate study on the energy and electron transfer processes occurring after photoexcitation in a comprehensive series of multichromophoric calix[4]arene–perylene bisimide conjugates. Finally, the photophysical properties of a series of compounds containing each two identical PBI units are discussed.
In the first part of this work a new approach to measure transient absorption spectra of fluorescent compounds by means of laser flash photolysis technique was presented. Generally, the recorded transient absorption signal consists of transient absorption, fluorescence and ground state bleaching. Thus, for fluorescent chromophores a fluorescence correction is indispensable in order to obtain undisturbed absorption decay curves as well as accurate transient absorption spectra. Due to time response characteristics of the PMT detector the fluorescence contribution cannot be corrected by recording the fluorescence separately. Measuring two transient absorption signals with probe light differing in intensity, compounds with quantum yields up to ~ 35 % can be investigated. This is a major improvement because transient absorption spectroscopy is a powerful method to gain insight into the kinetics and the energy of excited states and information in the time domain of fluorescence are no longer lost. In the second part the synthesis and the photophysical characterisation of redox cascades were reported. These cascades consist of an acridine acceptor and up to three triarylamine donor subunits. The redox potentials of the triarylamines were tuned by adequate substituents in the para-position of the phenyl ring to ensure a directed redox gradient. Upon photoexcitation a locally excited state or a CT state is populated which then injects a hole onto the adjacent donor and consequently results in a CS state. Fluorescence and transient absorption measurements revealed that HT depends strongly on donor strength and solvent polarity. Formation of a CS state was only observed in case of strong terminal donors or polar solvents. A low lying localised triplet state acts as an energy trap and quenches all CS states even in case of the cascade with the strongest terminal donor in very polar solvents. Furthermore, population of a CS state catalyses the formation of this triplet states which results in a shorter lifetime of the CS state compared to the lifetime of the CT state of the corresponding reference compound. Compared to redox cascades already reported in literature, the electronic coupling between the redox centres was decreased by sterical as well as electronic effects. To prolong the lifetime of the CS state saturated spacers on the one hand and a perpendicular orientation of the acceptor and the adjacent donor on the other hand were selected. The twisting of the subunits forming the CT state results in a higher degree of charge separation but its contribution to increase the lifetimes of the CS states is of minor importance. The longer lifetime of the CS states can be ascribed to the saturated spacers. Experimental data in combination with calculated values indicate that charge recombination takes place in the Marcus normal region by a superexchange mechanisms. Although charge recombination of the known cascades is located in the Marcus inverted region, these CS states decay faster than the CS states of the compounds investigated in this work.
Caterpillars of the butterfly Maculinea rebeli develop as parasites inside ant colonies. In intensively studied French populations, about 25% of caterpillars mature within 1 year (fast-developing larvae [FDL]) and the others after 2 years (slow-developing larvae [SDL]); all available evidence indicates that this ratio is under the control of egg-laying females. We present an analytical model to predict the evolutionarily stable fraction of FDL (pESS). The model accounts for added winter mortality of SDL, general and kin competition among caterpillars, a competitive advantage of SDL over newly entering FDL (priority effect), and the avoidance of renewed infection of ant nests by butterflies in the coming season (segregation). We come to the following conclusions: (1) all factors listed above can promote the evolution of delayed development; (2) kin competition and segregation stabilize pESS near 0.5; and (3) a priority effect is the only mechanism potentially selecting for. However, given the empirical data, pESS is predicted to fall closer to 0.5 than to the 0.25 that has been observed. In this particular system, bet hedging cannot explain why more than 50% of larvae postpone growth. Presumably, other fitness benefits for SDL, for example, higher fertility or longevity, also contribute to the evolution of delayed development. The model presented here may be of general applicability for systems where maturing individuals compete in small subgroups.
Aggression is a strikingly multi-faceted phenomenon occurring in vertebrates as well as in invertebrates. Despite its omnipresence, the neuronal basis of aggressive behaviours is yet barely understood. Many studies however, imply a role for biogenic amines in aggression. This PhD project aimed at contributing to the understanding of the neuronal correlates of aggression, with a main focus on the biogenic amine octopamine, using Drosophila melanogaster as the model system. In Drosophila, agonistic encounters of males and females are composed of a variety of both offensive and defensive components, some of which are displayed more often in one sex than in the other. To simplify analysis and to standardize evaluation, I chose to focus on a single indicator of aggression: the lunge, a striking feature unique to Drosophila male aggression. By evaluating the lunge I developed in cooperation with Andreas Eckart for the first time an automated, video-based analysis of Drosophila male aggression. The present software program gives the number of lunges for each fly in a certain time interval. In addition, it provides information such as the distance the fly walked and his size among others. In combination with a second software program that we developed, aggressive interactions between two male Drosophila melanogaster of a genotype of choice can now be registered either completely automatically or if preferred semi-automatically. Using these softwares, I demonstrate that (1) body size differences of 8% and higher influence the outcome of a fight in favour of the larger male; (2) walking activity alters lunge frequency with more lunges performed by more active pairs of males; (3) flies mutant for the white gene, one member of the ABC transporter family in Drosophila, are profoundly impaired in aggression, an effect that is partially due to reduced visual performance. (4) Either knocking-down white in various brain regions or chemically ablating the mushroom body located in the central brain by deleting its neuroblast precursors diminishes aggression, indicating that integrity of various neural circuits/brain regions is required for wild-type aggression to occur. Furthermore, I show that (5) flies lacking octopamine signalling but having altered tyramine signalling display hardly any lunge. A quantitative high-speed analysis revealed that lunge execution is almost indistinguishable from wild-type males. The results from the experiments in which octopamine levels and/or tyramine levels were restored suggest that an elaborate pattern of octopamine levels in time and space is required to enable flies to express wild-type aggressive behaviour.
In the present study numerical methods are employed within the framework of multiscale modeling. Quantum mechanics and finite element method simulations have been used in order to calculate thermoelastic properties of ceramics. At the atomic scale, elastic constants of ten different ceramics (Al2O3, alpha- and beta-SiC, TiO2-rutile and anatase, AlN, BN, CaF2, TiB2, ZrO2) were calculated from the first principles (ab-initio) using the density functional theory with the general gradient approximation. The simulated elastic moduli were compared with measured values. These results have shown that the ab-initio computations can be used independently from experiment to predict elastic behavior and can provide a basis for the modeling of structural and elastic properties of more complex composite ceramics. In order to simulate macroscopic material properties of composite ceramics from the material properties of the constituting phases, 3D finite element models were used. The influence of microstructural features such as pores and grain boundaries on the effective thermoelastic properties is studied through a diversity of geometries like truncated spheres in cubic and random arrangement, modified Voronoi polyhedra, etc. A 3D model is used for modeling the microstructure of the ceramic samples. The measured parameters, like volume fractions of the two phases, grain size ratios and grain boundary areas are calculated for each structure. The theoretical model is then varied to fit the geometrical data derived from experimental samples. The model considerations are illustrated on two types of bi-continuous materials, a porous ceramic, alumina (Al2O3) and a dense ceramic, zirconia-alumina composite (ZA). For the present study, alumina samples partially sintered at temperatures between 800 and 1320 C, with fractional densities between 58.4% and 97% have been used. For ZA ceramic the zirconia powder was partially stabilized and the ratio between alumina and zirconia was varied. For these two examples of ceramics, Young’s modulus and thermal conductivity were calculated and compared to experimental data of samples of the respective microstructure. Comparing the experimental and simulated values of Young’s modulus for Al2O3 ceramic a good agreement was obtained. For the thermal conductivity the consideration of thermal boundary resistance (TBR) was necessary. It was shown that for different values of TBR the experimental data lie within the simulated thermal conductivities. In the case of ZA ceramic also a good agreement between simulated and experimental values was observed. For smaller ZrO2 fractions, a larger Young’s modulus and thermal conductivity was observed in the experimental samples. The discrepancies have been discussed by taking into account the effect of pressure. Considering the dependence of the thermoelastic properties on the pressure, it has been shown that the thermal stresses resulting from the cooling process were insufficient to explain the discrepancies between experimental and simulated thermoelastic properties.
Cardiovascular disease is the major cause of mortality morbidity in both men and women in industrialized countries. The incidence of cardiovascular diseases in pre-menopausal women is lower compared to age-matched men but the risk of heart diseases increases dramatically after the onset of menopause.Therefore, it has been postulated that female sex hormones play an important role in cardiovascular health in pre-menopausal women. In contrast to clinical data, which failed to show positive estrogen effects on cardiovascular system of post- menopausal women, extensive experimental studies indicated cardioprotective effects of estrogens in laboratory animals. The majority of experimental estrogen substitution studies were performed with young individuals, thus the effects of ageing remain neglected and are poorly understood. The present project is the first attempt to study the cardiac effects of each estrogen receptor isoform (estrogen receptor alpha (ERa) and estrogen receptor beta (ERb)) in adult (“menopausal”) and senescent (“post- menopausal”) hypertensive rats. The female senescent spontaneously hypertensive rats (SHR) served as a model system for age- associated hypertension in females whereas young individuals were used for control experiments. Young and senescent SHR rats were treated with 17b- estradiol as well as new estrogen receptor isoform selective ligands 16a-LE2 (ERa agonist) and 8b-VE2 (ERb agonist). The results showed different functions of both estrogen receptor isoforms in cardiovascular system: ERa attenuated cardiac hypertrophy but not hypertension whereas ERb could significantly reduce both, blood pressure and cardiac hypertrophy. Surprisingly, both agonists and 17b- estradiol were effective in young animals but not in senescent SHR rats. These findings match with the clinical data and could be related to altered estrogen metabolism in senescent rats, since estrogen plasma levels did not increase to measurable extent in senescent animals receiving estrogen. Estrogen is metabolized by several 17b- hydroxysteroid dehydrogenase isoforms. In the current study, 17b- hydroxysteroid dehydrogenase type 10 (17b- HSD10) was identified as a novel protein- protein interaction partner of estrogen receptor alpha ligand binding domain (ERaLBD) in human heart. Cellular localization experiments of ERa in the cardiac myocytes showed nuclear and cytosolic localization pattern which overlapped partially with that of cardiac mitochondria. 17b-HSD10 is localized only in mitochondria. Direct interaction of both proteins was confirmed by pull- down experiments where 17b-HSD10 could be co-precipitated with ERa. Interestingly, protein interaction could be detected only under estrogen- free conditions whereas the presence of estrogen in the system blocked this interaction. Enzymatic assay which was developed in our laboratory, helped to define functional relevance of this interaction. The data obtained from enzymatic assays and protein- protein interaction studies strongly suggest that estrogen receptor could play an important role in the control of intracellular (or mitochondrial) estogen metabolism. The second potential ERa interaction partner in the heart- bladder cancer associated protein 10 (BLCAP10) - was initially identified in non- invasive bladder cancer cell lines. BLCAP10 protein expression in the heart as well as its localization pattern in cardiac myocytes is shown in the last part of the theses. Due to perinuclear localization similarity with ERb, we conclude that BLCAP10 could interact with ERb rather than with ERa. Poor BLCAP10 protein overexpression and toxicity in both, bacteria and eukaryotic cells, suggested that BLCAP10 could be involved in cell- cycle and/ or protein expression control. In summary, the results showed that isoform selective activation of estrogen receptors exert divergent effects in the cardiovascular system both by upregulation of aMHC expression or by lowering blood pressure. Hormones were effective in young animals but had only minor effects in senescent rats. The new ERa protein- protein interaction partners identified during the project provide new information about estrogen receptor function in the heart and its possible role in the regulation of estrogen homeostasis.
Since the fruit fly Drosophila melanogaster entered the laboratories as a model organism, new genetic, physiological, molecular and behavioral techniques for the functional analysis of the brain rapidly accumulated. Nowadays this concerted assault obtains its main thrust form Gal4 expression patterns that can be visualized and provide the means for manipulating -in unrestrained animals- groups of neurons of the brain. To take advantage of these patterns one needs to know their anatomy. This thesis describes the Virtual Insect Brain (VIB) protocol, a software package for the quantitative assessment, comparison, and presentation of neuroanatomical data. It is based on the 3D-reconstruction and visualization software Amira (Mercury Inc.). Its main part is a standardization procedure which aligns individual 3D images (series of virtual sections obtained by confocal microscopy) to a common coordinate system and computes average intensities for each voxel (volume pixel). The VIB protocol facilitates direct comparison of gene expression patterns and describes their interindividual variability. It provides volumetry of brain regions and helps to characterize the phenotypes of brain structure mutants. Using the VIB protocol does not require any programming skills since all operations are carried out at a (near to) self-explanatory graphical user interface. Although the VIB protocol has been developed for the standardization of Drosophila neuroanatomy, the program structure can be used for the standardization of other 3D structures as well. Standardizing brains and gene expression patterns is a new approach to biological shape and its variability. Using the VIB protocol consequently may help to integrate knowledge on the correlation of form and function of the insect brain. The VIB protocol provides a first set of tools supporting this endeavor in Drosophila. The software is freely available at http://www.neurofly.de.
In physiological conditions platelets have a major role in maintaining haemostasis. Platelets prevent bleeding from wounds by distinguishing normal endothelial cells in vasculature from areas with lesions to which they adhere. Interaction of platelet agonists and their receptors is controlled by intracellular signaling molecules that regulate the activation state of platelets. Very important intracellular signaling molecules are cyclic nucleotides (cGMP and cAMP), both involved in inhibition of platelet activation. Formation of cGMP and cAMP in platelets is stimulated by endothelial-derived NO and prostacyclin (PGI2), which then mediate inhibition of platelets by activating protein kinase G (PKG) and protein kinase A (PKA). Recently, it has been suggested that reactive oxygen species (ROS) represent new modulators of cell signaling within different cell types. The work summarized here describes the involvement of platelet ROS production in platelet activation, the relation of NO/cGMP/PKG I pathway to ROS and to mitogen-activated protein kinases (MAP kinase) signaling, and the involvement of cyclic nucleotides in megakaryocyte and platelet development. Platelets activated with different agonists produce intracellular but not extracellular ROS by activation of NAD(P)H oxidase. In addition, ROS produced in platelets significantly affects αIIbβ3 integrin activation but not alpha/dense granule secretion and platelet shape change. Thrombin induced integrin αIIbβ3 activation is significantly decreased after pretreatment of platelets with NAD(P)H oxidase inhibitors and superoxide scavengers. These inhibitors also reduce platelet aggregation and thrombus formation on collagen under high shear and achieve their effects independently of the NO/cGMP pathway. ADP secreted from platelet dense granules with subsequent activation of P2Y12 receptors as well as thromboxane A2 release are found to be important upstream mediators of p38 MAP kinase activation by thrombin. However, p38 MAP kinase activation does not significantly contribute to calcium mobilization, P-selectin expression, αIIbβ3 integrin activation and aggregation of human platelets in response to thrombin. Finally, PKG activation does not stimulate, but rather inhibit, p38 and ERK MAP kinases in human platelets. Further study revealed that cyclic nucleotides not only inhibit platelet activation, but are also involved, albeit differentially, in megakaryocyte and platelet development. cAMP is engaged in haematopoietic stem cell differentiation to megakaryocytes, and cGMP has no impact on this process. While PKA is already present in stem cells, expression of proteins involved in cGMP signaling (soluble guanylyl cyclase, sGC; PKG) increases with maturation of megakaryocytes. In the final step of megakaryocyte maturation that includes release of platelets, cGMP and cAMP have mild but opposing effects: cGMP increases platelet production while cAMP decreases it indicating a finely regulated process that could depend on stimulus coming from adjacent endothelial cells of sinusoids in bone marrow. The results of this thesis contribute to a better understanding of platelet regulation and of the possible molecular mechanisms involved in megakaryocyte maturation in bone marrow vascular microenvironment.
Calculations of multi-particle processes at the one-loop level: precise predictions for the LHC
(2007)
The Standard Model (SM) of elementary particle physics provides a uniform framework for the description of three fundamental forces, the electromagnetic and weak forces, describing interactions between quarks and leptons, and the strong force, describing a much stronger interaction between the coloured quarks. Numerous experimental tests have been performed in the last thirty years, showing a spectacular agreement with the theoretical predictions of the Standard Model, even at the per mille level, therefore validating the model at the quantum level. An important cornerstone of the Standard Model is the Higgs mechanism, which provides a possible explanation of electroweak symmetry breaking, responsible for the masses of elementary fermions and the W and Z bosons, the carriers of the weak force. This mechanism predicts a scalar boson, the Higgs boson, which has escaped its discovery so far. If the Higgs mechanism is indeed realised in nature, the upcoming Large Hadron Collider (LHC) at CERN will be able to find the associated Higgs boson. The discovery of a Higgs boson by itself is not sufficient to establish the Higgs mechanism, the basic ingredient being the Higgs potential which predicts trilinear and quartic couplings. These have to be confirmed experimentally by the study of multi-Higgs production. We therefore present a calculation of the loop-induced processes gg to HH and gg to HHH, and investigate the observability of multi-Higgs boson production at the LHC in the Standard Model and beyond. While the SM cross sections are too small to allow observation at the LHC, we demonstrate that physics beyond the SM can lead to amplified, observable cross sections. Furthermore, the applicability of the heavy top quark approximation in two- and three-Higgs boson production is investigated. We conclude that multi-Higgs boson production at the SuperLHC is an interesting probe of Higgs sectors beyond the SM and warrants further study. Despite the great success of the SM, it is widely believed that this model cannot be valid for arbitrarily high energies. The LHC will probe the TeV scale and theoretical arguments indicate the appearance of physics beyond the SM at this scale. The search for new physics requires a precise understanding of the SM. Precise theoretical predictions are needed which match the accuracy of the experiments. For the LHC, most analyses require next-to-leading order (NLO) precision. Only then will we be able to reliably verify or falsify different models. At the LHC, many interesting signatures involve more than two particles in the final state. Precise theoretical predictions for such multi-leg processes are a highly nontrivial task and new efficient methods have to be applied. The calculation of the process PP to VV+jet at NLO is an important background process to Higgs production in association with a jet at the LHC. We compute the virtual corrections to this process which form the "bottleneck" for obtaining a complete NLO prediction. The resulting analytic expressions are generated with highly automated computer routines and translated into a flexible Fortran code, which can be employed in the computation of differential cross sections of phenomenological interest. The obtained results for the virtual corrections indicate that the QCD corrections are sizable and should be taken into account in experimental studies for the LHC.
Henri J.M. Nouwen (1932-1996), a renowned pastoral theologian, has written more than 40 books among which several are about pastoral care and the spirituality of pastoral care. It was interesting for me to notice the parallel between his life and the contents of his books. He has undergone a tremendous personal development and spiritual maturity. His books invite all the christians and pastors to grow in the spiritual life. The spirituality is the underlying principle of creative ministry. Nouwen moves away from the traditional approach and concepts and develops his own concept of spiritual growth and pastoral care. Rooted in tradition and trained as a pastoral psychologist Nouwen is very appealing to the modern generation. This dissertation takes the reader through the life and writings of Nouwen to come to his original and new understanding of the spirituality of the pastoral care.
Cutaneous leishmaniasis is an infectious disease that is endemic especially in tropical and desert regions with an incidence of 1.5 million cases per year and a prevalence of 12 million people infected worldwide. The infection can be caused by the intracellular parasite Leishmania major. The disease has been studied extensively in the murine model. It has become apparent that the induction of a class of interferon (IFN)--producing CD4+ T helper cells (TH1 cells) that activate macrophages to kill the parasites they harbor is desicive for the establishment of immunity. The redirection of the host’s immune response towards a protective TH1 phenotype will also be the key to an effective vaccine. Dendritic cells (DC) loaded with leishmanial antigens ex vivo were lately described as vaccines against L. major infections. One single recombinant Leishmania antigen, LeIF (Leishmania homologue of eukaryotic ribosomal initiation factor 4a), which was identified as a protein that stimulates DC to secrete interleukin (IL)-12 and discussed as a pattern-associated molecular pattern (PAMP), was found to mediate a protective TH1-dependent effect when used for pulsing of DC. The application of recombinant proteins is tied to many disadvantages, which is why other methods of antigen administration have been developed. RNA electroporation of DC has recently emerged from tumor research as a safe and versatile method of antigen delivery, by which a large number of RNA molecules encoding a specific antigen gains access to the cytosol of DC by an electrical impulse. The present study describes, for the first time, transfection of DC with RNA encoding a molecularly defined parasite antigen. Initially, a standardized protocol for RNA transfection was established, using the enhanced green fluorescent protein (EGFP) as reporter antigen. EGFP-RNA was well translatable in an in vitro translation system, and both a DC cell line (fetal skin-derived DC; FSDC) and murine primary bone marrow-derived DC (BMDC) could be transfected efficiently, with a yield of up to 90% and 75%, respectively. In both cell types, maximal transfection efficiency was attained with 20 µg RNA and could not be further increased with larger amounts of RNA. The level of antigen expression, measured as the mean fluorescence intensity (MFI) by flow cytometry, was directly proportional to the amount of RNA used for transfection. In FSDC, transfection efficiency and MFI were generally higher than in BMDC when the same amounts of RNA were used. Furthermore, the kinetics was shown to be sensitive to treatment with lipopolysaccharide (LPS): the expression peak was higher and was reached sooner, followed by a more rapid decline. In transfection experiments with LeIF, two variants of LeIF-RNA were used: LeIF(fl)-RNA, encoding the complete LeIF sequence, and LeIF(226)-RNA, encoding only the aminoterminal half of the LeIF sequence (226 amino acids), the immunogenic part of LeIF. Only LeIF(fl) was detectable by Western Blot in whole cell lysates of BMDC after LeIF(fl)-RNA transfection, whereas LeIF(226) could never be detected in LeIF(226)-transfected BMDC. However, as both constructs were well translatable in a cell-free system, the failure to detect LeIF(226) in BMDC lysates did not represent a failure in RNA translation, but rather a rapid antigen degradation. It was therefore expected that LeIF(226)-transfected BMDC should nevertheless be able to present LeIF(226)-derived antigenic peptides to T cells from BALB/c mice primed with recombinant LeIF (rLeIF). This hypothesis was confirmed by measuring IFN- production in BMDC-T cell co-incubation assays, showing that rLeIF-pulsed, LeIF(226)- and LeIF(fl)-transfected day 7 BMDC did indeed activate T cells from LeIF-immunized mice in an antigen-specific manner. In contrast, IL-4 was not produced, which was consistent with the fact that T cells found in lymph nodes from LeIF-primed mice are primarily of the TH1 type. In the supernatants of LeIF-transfected BMDC cultures, in contrast to rLeIF-pulsed BMDC, the proinflammatory cytokines IL-1β, IL-6, IL-10 and IL-12 were not detected. This effect was not due to the electroporation procedure, as cytokine production by BMDC electroporated with rLeIF was only partially impaired. Also, the expression levels of CD86 were lower upon LeIF transfection than after pulsing with rLeIF. Thus, LeIF transfection did not induce maturation of DC. In conclusion, LeIF-transfected BMDC may have acted as semi-mature antigen-specific tolerance inducers, with regulatory T cells as responders. The effect of LeIF transfection on the immunostimulatory capacity of BMDC was not significantly increased when day 8 or 9 BMDC were used. However, day 8, and even more day 9 BMDC pulsed with rLeIF mounted a vigorous T cell response. Day 9 BMDC were able to activate naïve T cells. In conclusion, before a strong T cell response against LeIF can be induced, DC need to – besides presenting antigen and expressing co-stimulatory molecules – exhibit a susceptibility to the innate signaling molecule LeIF which is linked to their maturation age. This third signal is provided by extracellular rLeIF, but it is not conveyed – or is suppressed – by intracellular LeIF after LeIF-RNA transfection. Furthermore, electroporation of rLeIF abrogated IL-12 production by BMDC completely, the production of IL-1 was reduced with higher antigen doses, and the production of IL-10 was partially increased. The IL-6 production was unaffected. This altered cytokine profile suggests that LeIF as a PAMP might have a bipartite nature: besides exhibiting the capacity to stimulate IL-12 production upon extracellular presence, thereby enhancing host resistance against L. major, LeIF could also contribute to parasitic host evasion mechanisms from intracellular compartments of DC, possibly by interfering with mitogen-activated protein (MAP) kinase signaling pathways. Thus, the adjuvant properties of LeIF depend both on its mode of delivery (transfection with RNA vs. pulsing with the recombinant protein) and the targeted compartment (extra- vs. intracellular). From this work, it can be summarized that BMDC are well transfectable with a parasite antigen. The antigen is processed and presented, but it is not recognized as a PAMP by DC. Hence, transfection with antigen-encoding mRNA by itself does not convey all necessary signals for the elicitation of a potent immune response.
The process of sex-determination can be better understood through examinations of developing organs and cells, which are involved in the formation of undifferentiated gonad. This mechanisms show in fish a broad variety, ranging from hermaphroditism to gonochorism and environmental to genetic sex determination. Hormones and abiotic factors such as temperature and pH can influence teleost development and reproductive traits. These factors are vulnerable to pollutants and climate changes. Therefore, it is important to examine gonad development and sex-determination/differentiation in teleost fish. Teleost fish are the largest known group of vertebrates with approximately 25,000 species and are used for such kind of examinations as model organisms. Recently, in Oryzias latipes (medaka), dmrt1bY (or dmy), a member of the Dmrt gene family, has been described as testis-determining gene. However, this gene is not the universal master sex-determining gene in teleost fish. Although dmrt1bY is present in the most closely related species of the genus, namely Oryzias curvinotous, it is absent from other Oryzias species, like Oryzias celebensis, and other fish. During my thesis, I studied gonad development in medaka and in the closely related species Oryzias celebensis. Germ cell specification in medaka seems to be dependent on maternally provided cytoplasmatic determinants, so called germ plasm. Nanos and vasa are such germ cell specific genes. In zebrafish they are asymmetrically localized in the early embryo. I have shown that nanos mRNA is evenly distributed in the early embryo of medaka. A similar pattern has been already described for the medaka vasa homolog, olvas. This suggests differences in PGC specification in zebrafish and medaka. Further, the vasa homolog was isolated and the expression pattern examined in O. celebensis. The results show that it can be used as a germ cell specific marker. Additionally, the primordial germ cell migration in O. celebensis was followed, which is similar to medaka PGC migration. Primordial germ cell migration in vertebrates is dependent on the chemokine stromal cell-derived factor 1 (Sdf-1). Medaka has two different sdf-1 genes, sdf-1a and sdf-1b. Both genes are expressed in the lateral plate mesoderm (LPM). During late embryonic development, I could show that sdf-1a is expressed in newly formed somites and not longer in the LPM. Sdf-1b expression persisted in the posterior part of the lateral plate mesoderm in the developing gonad. In terms of early and late functions, this suggests subfunctionalization of sdf-1a and sdf-1b. In “higher” vertebrates, genes that are involved in the process of gonad development have been studied in detail, e.g. Wt1, Sox9, and Amh. I have analyzed the expression pattern of wt1 and sox9 co-orthologs and amh. In both, the medaka and O. celebensis, wt1a transcripts were localized in the LPM and its expression was similar to sdf-1a gene expression in medaka. Wt1b expression was restricted to the developing pronephric region. During later embryonic development, wt1a is specifically expressed in the somatic cells of the gonad primordium in both sexes. This is the first time that in fish wt1 gene expression in developing gonads has been described. Therefore, this result suggests that wt1a is involved in the formation of the bipotential gonad. Furthermore, I have analyzed the gonad specific function of the wt1 co-orthologs in medaka. I could show that a conditional co-regulation mechanism between Wt1a and Wt1b ensures PGC maintenance and/or survival. The expression of sox9 genes in medaka and sox9b in O. celebensis were detected in the somatic cells of the gonad primordium of both sexes. Additionally, I have shown that amh and amhrII in medaka are expressed in somatic cells of the gonad primordium of both sexes. This suggests that sox9b, amh and amhrII are involved in gonad development and have specific functions in the adult gonad. In O. celebensis I could detect an expression of dmrt1 already six days after fertilization in half of the embryos, which is similar to the dmrt1bY expression in medaka. Whether the expression of dmrt1 is male specific in O. celebensis is currently under investigation. Altogether, the obtained results provide new insights into gene expression patterns during the processes of gonad development. Furthermore, no differences in the expression pattern of wt1a and sox9b during gonad development between the medaka and O. celebensis could be detected. This might indicate that the genetic mechanisms during gonad development are similar in both species.
Clonidine is an agonist at alpha2-adrenergic receptors that mediate a wide variety of the physiological responses to epinephrine and norepinephrine, such as inhibition of neurotransmitter release as well as sedation and analgesia. As with other therapeutically used alpha2-agonists such as moxonidine and rilmenidine, clonidine possesses an imidazoline structure and is believed to lower blood pressure not only via central and peripheral alpha2-receptors, but perhaps even more so by acting on central “imidazoline I1 receptors” in the brain stem. The molecular structure of these hypothetical “imidazoline I1 receptors” has not yet been identified. In order to test whether ligands with an imidazoline structure elicit pharmacological effects via alpha2-adrenergic receptors or via “imidazoline receptors”, mice were generated with a targeted deletion of all three alpha2-adrenergic receptor subtypes (alpha2ABC-KO). These alpha2ABC-KO mice were an ideal model in which to examine the pharmacological effects of the centrally acting antihypertensives clonidine, moxonidine and rilmenidine in the absence of alpha2-adrenergic receptors. As expected, sedative and analgesic actions of clonidine were completely absent in alpha2ABC-KO mice, confirming the sole role of alpha2-receptors in these properties of clonidine. Clonidine significantly lowered heart rate in anesthetized alpha2ABC-KO and wild-type mice by up to 150 beats/min. A similar bradycardic effect of clonidine was observed in isolated spontaneously beating right atria from alpha2ABC-KO mice. After treatment with the specific If inhibitor ZD 7288, clonidine was no longer able to lower spontaneous beating frequency, suggesting a common site of action. Furthermore, in HEK293 cells stably transfected with HCN2 and HCN4, it could be shown that clonidine inhibits the If current via blockade of pacemaker channels with similar affinity as in isolated alpha2ABC-KO and wild-type atria. This inhibition was demonstrated again in isolated sinoatrial node (SAN) cells from alpha2ABC-KO mice and was identical in potency and efficacy to clonidine inhibition observed in isolated wild-type SAN cells, confirming that inhibition of atrial HCN channels constitutes the alpha2-independent bradycardic action of clonidine. Direct inhibition of cardiac HCN pacemaker channels contributes to the bradycardic effects of clonidine in gene-targeted mice. Thus clonidine-like drugs represent novel structures for future HCN channel inhibitors.
The insulin receptor ortholog EmIR of the fox-tapeworm Echinococcus multilocularis displays significant structural homology to the human insulin receptor (HIR) and has been suggested to be involved in insulin sensing mechanisms of the parasite’s metacestode larval stage. In the present work, the effects of host insulin on Echinococcus metacestode vesicles and the proposed interaction between EmIR and mammalian insulin have been studied using biochemical and cell-biological approaches. Human insulin, exogenously added to in vitro cultivated parasite larvae, (i) significantly stimulated parasite survival and growth, (ii) induced DNA de novo synthesis in Echinococcus, (iii) affected overall protein phosphorylation in the parasite, and (iv) specifically induced the phosphorylation of the parasite’s Erk-like MAP kinase orthologue EmMPK1. These results clearly indicated that Echinococcus metacestode vesicles are able to sense exogenous host insulin which induces a mitogenic response. To investigate whether EmIR mediates these effects, anti-EmIR antibodies were produced and utilized in biochemical assays and immunohistochemical analyses. EmIR was shown to be expressed in the germinal layer of the parasite both on the surface of glycogen storing cells and undifferentiated germinal cells. Upon addition of exogenous insulin to metacestode vesicles, the phosphorylation of EmIR was significantly induced, an effect which was suppressed in the presence of specific inhibitors of insulin receptor-like tyrosine kinases. Furthermore, upon expression of EmIR/HIR receptor chimera containing the extracellular ligand binding domain of EmIR in HEK 293 cells, a specific autophosphorylation of the chimera could be induced through the addition of exogenous insulin. These results indicated the capability of EmIR to sense and to transmit host insulin signals to the Echinococcus signaling machinery. The importance of insulin signaling mechanisms for parasite survival and growth were underscored by in vitro cultivation experiments in which the addition of an inhibitor of insulin receptor tyrosine kinases led to vesicle degradation and death. Based on the above outlined molecular data on the interaction between EmIR and mammalian insulin, the parasite’s insulin receptor orthologue most probably mediates the insulin effects on parasite growth and is, therefore, a potential candidate factor for host-parasite communication via evolutionary conserved pathways. In a final set of experiments, signaling mechanisms that act downstream of EmIR have been analyzed. These studies revealed significant differences between insulin signaling in Echinococcus and the related cestode parasite Taenia solium. These differences could be associated with differences in the organo-tropism of both species.
Frustration has been investigated since the early beginnings of psychological research. Yet, it is still unclear how frustration influences the two main parameters of motivation, i.e., orientation (approach-avoidance) and intensity. Some theories propose that controllable frustration increases approach motivation, thereby maintaining motivational intensity. In contrast, other theories propose that the perception of obstacles immediately elicits an avoidance orientation because of the negative valence of the perceptual input. Yet, the latter theories can not explain how motivational intensity is maintained upon encountering obstacles. The aim of the present thesis is to integrate previous contradicting assumptions by describing the influence of frustration on motivational orientation and motivational intensity on the basis of a two-system model of behavior. The definition of frustration as an unexpected obstacle blocking the attainment of an anticipated gratification implies that the obstacle is immediately perceived, whereas the goal is only represented in working memory. According to two-system models, these two types of representations influence different levels of behavior regulation. Whereas spontaneous approach-avoidance tendencies are mainly determined by the valence of the perceptual input, decisions to engage effort to reach the goal are based on knowledge about goals and appraisals of controllability of obstacles. Supporting this theorizing, six experiments demonstrated that frustration immediately activates avoidance tendencies. This was true for frustration of approach goals as well as for frustration of avoidance goals. Furthermore, this effect did not depend on the type of frustration feedback, and was found when approach-avoidance tendencies were measured after completion of goal pursuit as well as while overcoming frustration. In addition, approaching obstacles impaired performance in a subsequent task, suggesting that approaching obstacles consumed cognitive resources. This further supports the assumption that obstacles immediately activate avoidance tendencies. Furthermore, dispositional action-state orientation, which has been previously shown to moderate automatic affective reactions, influenced approach-avoidance tendencies, indicating that affect mediates the impact of frustration on behavioral tendencies. Finally, manipulations of controllability of frustration did not influence spontaneous approach-avoidance tendencies, but measures of motivational intensity such as decisions to engage more effort as well as activation of goal-relevant behavioral schemata. In sum, these findings support the assumptions that immediately elicited motivational orientations are mainly a function of the valence of perceptual input, whereas behavior to reach the goal (i.e. motivational intensity) is regulated by working memory representations such as appraisals of goal expectancy. Motivational orientations may serve to prepare organisms for quick reactions to sudden, unexpected occurrences, whereas behavior regulation based on goal appraisals may provide stability and flexibility in long-term goal pursuit.
Within the scope of this thesis, spin related transport phenomena have been investigated in HgTe/HgCdTe quantum well structures. This material exhibits peculiar band structure properties, which result in a strong spin-orbit interaction of the Rashba type. An inverted band structure, i.e., a reversed ordering of the energy states in comparison to common semiconductors, is obtained for quantum well layers above a critical thickness. Furthermore, the band structure properties can be controlled in the experiments by moderate gate voltages. Most prominently, the type of carriers in HgTe quantum wells can be changed from n to p due to the narrow energy gap. Along with the inverted band structure, this unique transition is the basis for the demonstration of the Quantum Spin Hall state, which is characterized by the existence of two one-dimensional spin-polarized edge states propagating in opposite directions, while the Fermi level in the bulk is in the energy gap. Since elastic scattering is suppressed by time reversal symmetry, a quantized conductance for charge and spin transport is predicted. Our experiments provide the first experimental demonstration of the QSH state. For samples with characteristic dimensions below the inelastic mean free path, charge conductance close to the expected value of 2e^2/h has been observed. Strong indication for the edge state transport was found in the experiments as well. For large samples, potential fluctuations lead to the appearance of local n-conducting regions which are considered to be the dominant source of backscattering. When time reversal symmetry is broken in a magnetic field, elastic scattering becomes possible and conductance is significantly suppressed. The suppression relies on a dominant orbital effect in a perpendicular field and a smaller Zeeman-like effect present for any field direction. For large perpendicular fields, a re-entrant quantum Hall state appears. This unique property is directly related to the non-trivial QSH insulator state. While clear evidence for the properties of charge transport was provided, the spin properties could not be addressed. This might be the goal of future experiments. In another set of experiments, the intrinsic spin Hall effect was studied. Its investigation was motivated by the possibility to create and to detect pure spin currents and spin accumulation. A non-local charging attributed to the SHE has been observed in a p-type H-shaped structure with large SO interaction, providing the first purely electrical demonstration of the SHE in a semiconductor system. A possibly more direct way to study the spin Hall effects opens up when the spin properties of the QSH edge states are taken into account. Then, the QSH edge states can be used either as an injector or a detector of spin polarization, depending on the actual configuration of the device. The experimental results indicate the existence of both intrinsic SHE and the inverse SHE independently of each other. If a spin-polarized current is injected from the QSH states into a region with Rashba SO interaction, the precession of the spin can been observed via the SHE. Both the spin injection and precession might be used for the realization of a spin-FET similar to the one proposed by Datta and Das. Another approach for the realization of a spin-based FET relies on a spin-interference device, in which the transmission is controlled via the Aharonov-Casher phase and the Berry phase, both due to the SO interaction. In the presented experiments, ring structures with tuneable SO coupling were studied. A complex interference pattern is observed as a function of external magnetic field and gate voltage. The dependence on the Rashba splitting is attributed to the Aharonov-Casher phase, whereas effects due to the Berry phase remain unresolved. This interpretation is confirmed by theoretical calculations, where multi-channel transport through the device has been assumed in agreement with the experimental results. Thus, our experiments provide the first direct observation of the AC effect in semiconductor structures. In conclusion, HgTe quantum well structures have proven to be an excellent template for studying spin-related transport phenomena: The QSHE relies on the peculiar band structure of the material and the existence of both the SHE and the AC effect is a consequence of the substantial spin-orbit interaction. While convincing results have been obtained for the various effects, several questions can not be fully answered yet. Some of them may be addressed by more extensive studies on devices already available. Other issues, however, ask, e.g., for further advances in sample fabrication or new approaches by different measurements techniques. Thus, future experiments may provide new, compelling insights for both the effects discussed in this thesis and, more generally, other spin-orbit related transport properties.
This work studies the convergence of trajectories of gradient-like systems. In the first part of this work continuous-time gradient-like systems are examined. Results on the convergence of integral curves of gradient systems to single points of Lojasiewicz and Kurdyka are extended to a class of gradient-like vector fields and gradient-like differential inclusions. In the second part of this work discrete-time gradient-like optimization methods on manifolds are studied. Methods for smooth and for nonsmooth optimization problems are considered. For these methods some convergence results are proven. Additionally the optimization methods for nonsmooth cost functions are applied to sphere packing problems on adjoint orbits.
Neural crest cells and sensory neurons are two prominent cell populations which are induced at the border between neural and non-neural ectoderm during early vertebrate development. The neural crest cells are multipotent and highly migratory precursors that give rise to face cartilage, peripheral neurons, glia cells, pigment cells and many other cell types unique to vertebrates. Sensory neurons are located dorsally in the neural tube and are essential for sensing and converting environmental stimuli into electrical motor reflexes. In my PhD thesis, I obtained novel insights into the complex processes of cell induction at the neural plate border by investigating the regulation and function of mdkb in zebrafish. First, it was possible to demonstrate that mdkb expression is spatiotemporally correlated with the induction of neural crest cells and primary sensory neurons at the neural plate border. Second, it became evident that the expression of mdkb is activated by known neural crest cell inducing signals, like Wnts, FGFs and RA, but that it is independent of Delta-Notch signals essential for lateral inhibition. Knockdown experiments showed that mdkb function is necessary for induction of neural crest cells and sensory neurons at the neural plate border, probably through determination of a common pool of progenitor cells during gastrulation. The present study also used the advantages of the zebrafish model system to investigate the in vivo function of all midkine gene family members during early brain development. In contrast to the situation in mouse, all three zebrafish genes show distinct expression patterns throughout CNS development. mdka, mdkb and ptn expression is detected in mostly non-overlapping patterns during embryonic brain development in the telencephalon, the mid-hindbrain boundary and the rhombencephalon. The possibility of simultaneously knocking down two or even three mRNAs by injection of morpholino mixtures allowed the investigation of functional redundancy of midkine factors during brain formation. Knockdown of Midkine proteins revealed characteristic defects in brain patterning indicating their association with the establishment of prominent signaling centers such as the mid-hindbrain boundary and rhombomere 4. Interestingly, combined knockdown of mdka, mdkb and ptn or single knockdown of ptn alone prevented correct formation of somites, either by interfering with the shifting of the somite maturation front or interferance with cell adhesion in the PSM. Thus, Ptn was identified as a novel secreted regulator of segmentation in zebrafish.
The steroid hormones corticosterone/cortisol and aldosterone are synthesized and secreted by the adrenal gland in response to stress or an altered salt-water balance. This is controlled by a negative feedback mechanism referred to as the HPA axis and the RAAS. Actions of these steroid hormones are mediated by the glucocorticoid receptor (GR) and the mineralocorticoid receptor (MR), which reside in the cytoplasm in a complex with heat-shock proteins. Both, the GR and the MR belong to the nuclear receptor superfamily and share a common protein structure consisting of three separate domains. However, they have different affinities for various ligands, their actions depend on hormone concentration, they are modulated by pre-receptor mechanisms such as the 11β-HSD2 and they are differently distributed in several tissues. Aldosterone acts via the MR in epithelial and in non-epithelial cells and regulates sodium-water homeostasis, cardiovascular function, neuronal excitability and adipocyte differentiation. So far the analysis of gene inactivation in vivo was limited to mice, but disease models in rats sometimes more closely reflect the situation encountered in humans. Since embryonic stem cells and thus gene targeting in rats is not available, we generated MR knock-down transgenic rats by lentiviral delivery of a shRNA. The F1 progeny of the founder rats showed a wide range of reduced MR mRNA and protein levels in kidney and hippocampus, the two major sites of MR expression. In contrast, expression of the highly homologous GR was unaltered, indicating specificity of gene inactivation. The two MR target genes, Sgk1 and ENaC, were up-regulated while the mRNA levels of other genes such as IK1 and SCD2 was reduced. Similar to the knock-out mice and human patients, the knock-down rats displayed typical signs of pseudohypoaldosteronism type I such as increased serum levels of aldosterone and renin as well as growth retardation. Importantly, we found a linear relationship between MR mRNA expression in kidney, serum aldosterone levels and body weight. Thus, our MR knock-down rats are amongst the first examples of RNAi in vivo and confirm that this technique allows to accomplish graded levels of gene inactivation that mimick human genetic diseases. Secondly, we investigated the role of the GR and the MR for the immunomodulatory activities of glucocorticoids (GCs) in peritoneal macrophages. GCs are involved in the modulation of macrophage function and thereby control the host’s immune responses to pathogens. Therefore, GCs are widely used for the treatment of inflammation and autoimmune diseases. However, concerning these GC activities neither the role of hormone concentration nor the differential contribution of the GR and the MR are known. At first we confirmed that both receptors but not 11β-HSD2 are expressed in peritoneal macrophages. Next, we showed that low levels of corticosterone enhance NO production as well as mRNA expression of pro-inflammatory cytokines, chemokines and enzymes required for mediator synthesis. In contrast, at high corticosterone concentrations macrophage function was strongly repressed. Importantly, inactivation of the GR by lentiviral delivery of siRNAs abrogated both the immunostimulatory and the immunosuppressive GC actions whereas inactivation of the MR had no effect. Furthermore, removal of endogenous GCs by adrenalectomy in vivo induced a pre-activated state in macrophages that could be modulated by corticosterone. We conclude that GCs exert distinct effects on macrophage function dependent on their concentration, and that they act through the GR despite concomitant expression of the MR. In summary, our results confirm that lentiviral delivery of shRNAs is an efficient means to down-regulation gene expression in primary cells and transgenic rats and thereby allows to perform functional studies on gene function that were previously limited to mice.
The Nuclear Factors of Activated T cells (NFATs) are critical transcription factors that direct gene expression in immune and non-immune cells. Interaction of T cells with Ag-presenting cells results in the clustering of T-cell antigen receptor (TCR), co-receptors and integrins. Subsequent signal transduction resulting in NFAT activation leads to cytokine gene expression. Among the NFATs expressed in T cells, NFATc1 shows a unique induction property, which is essential for T cell differentiation and activation. It was revealed before that 3 major isoforms of NFATc1 are generated in activated T cells – the inducible short NFATc1/A, and the longer isoforms NFATc1/B and C. However, due to alternative splicing events and the existence of two different promoters and two alternative polyadenylation, we show here that 6 isoforms are synthesized in T cells which differ in their N-terminal and C-terminal peptides. In these experiments, we have identified these 6 isoforms by semi-quantitative long distance RT-PCR in several T cells subsets, and the inducible properties of 6 isoforms were investigated in those cells. The short NFATc1/A which is under control of the P1 promoter and the proximal pA1 polyadenylation site was the most prominent and inducible isoform in T effector cells. The transcription of the longer NFATc1/B and C isoforms is constitutive and even reduced in activated T lymphocytes. In addition to NFATc1 autoregulation, we tried to understand the NFATc1 gene regulation under the control of PKC pathways by microarray analysis. Compared to treatment of T cells with ionomycin alone (which enhances Ca++ flux), treatment of cells with the phorbolester TPA (leading to PKC activation) enhanced the induction of NFATc1. Microarray analysis revealed that PKC activation increased the transcription of NF-B1, Fos and JunB, which are important transcription factors binding to the regulatory regions of the NFATc1 gene. Besides the promoting effect of these transcription factors, we provided evidence that p53 and its targeting gene, Gadd45, exerted a negative effect on NFATc1 gene transcription. Summarizing all these results, we drew novel conclusions on NFATc1 expression, which provide a more detailed view on the regulatory mechanisms of NFATc1 transcription. Considering the high transcription and strong expression of NFATc1 in various human lymphomas, we propose that similar to NF-B, NFATc1/A plays a pivotal role in lymphomagenesis.
Albeit of high technological import, epitaxial self-assembly of CdSe/ZnSe QDs is non-trivial and still not clearly understood. The origin and attributes of these QDs are significantly different from those of their III-V and group-IV counterparts. For III-V and group-IV heterosystems, QD-formation is assigned to the Stranski Krastanow (SK) transition, wherein elastic relaxation of misfit strain leads to the formation of coherent three-dimensional (3D) islands, from a supercritically strained two-dimensional (2D) epilayer. Unfortunately, this phenomenon is inconspicuous for the CdSe/ZnSe heterosystem. Well-defined 3D islands are not readily formed in conventional molecular beam epitaxial (MBE) growth of CdSe on ZnSe. Consequently, several alternative approaches have been adopted to induce/enhance formation of QDs. This thesis systematically investigates three such alternative approaches, along with conventional MBE, with emphasis on the formation-mechanism of QDs, and optimization of their morphological and optical attributes. It is shown here that no distinct 3D islands are formed in MBE growth of CdSe on ZnSe. The surface of the CdSe layer represents a rough 2D layer, characterized by a dense array of shallow (<1nm) abutting mounds. In capped samples, the CdSe deposit forms an inhomogeneous CdZnSe quantum well (QW)-like structure. This ternary QW consists of local Cd-rich inclusions, which confine excitons three-dimensionally, and act as QDs. The density of such QDs is very high (~ 1012 cm-2). The QDs defined by the composition inhomogeneities of the CdZnSe QW presumably originate from the shallow mounds of the uncapped CdSe surface. By a technique wherein a CdSe layer is grown at a low temperature (TG = 230 °C) and subsequently annealed at a significantly higher temperature (TA =310 °C), tiny but distinct 3D islands are formed. In this work, the mechanism underlying the formation of these islands is reported. While the CdSe deposit forms a quasi-two-dimensional (quasi-2D) layer at TG = 230 °C, subsequent annealing at TA = 310 °C results in a thermally activated “up-climb” of adatoms onto two-dimensional clusters (or precursors) and concomitant nucleation of 3D islands. The areal density of QDs, achieved by this technique, is at least a decade lower than that typical for conventional MBE growth. It is demonstrated that further reduction is possible by delaying the temperature ramp-up to TA. In the second technique, formation of distinct islands is demonstrated by deposition of amorphous selenium (a-Se) onto a 2D CdSe epilayer at room temperature and its subsequent desorption at a higher temperature (TD = 230 °C). Albeit the self-assembled islands are large, they are severely truncated during subsequent capping with ZnSe, presumably due to segregation of Cd and Zn-alloying of the islands. The segregation phenomenon is analyzed in this work and correlated to the optical properties of the QDs. Additionally, very distinct vertical correlation of QDs in QD-superlattices, wherein the first QD-layer is grown by this technique and the subsequent ones by migration enhanced epitaxy (MEE), is reported. The process steps of the third variant technique, developed in course of this work, are very similar to those of the previous one-the only alteration being the substitution of selenium with tellurium as the cap-forming-material. This leads not only to large alteration of the morphological and optical attributes of the QDs, but also to formation of unique self-assembled island-patterns. Oriented dashes, straight and buckled chains of islands, and aligned island-pairs are formed, depending on the thickness of the Te-cap layer. The islands are partially alloyed with Te and emit luminescence at very low energies (down to 1.7 eV at room temperature). The Te cap layer undergoes (poly)crystallization during temperature ramp-up (from room temperature to TD) for desorption. Here, it is shown that the self-assembled patterns of the island-ensembles are determined by the pattern of the grain boundaries of the polycrystalline Te layer. Based on an understanding of the mechanism of pattern formation, a simple and “clean” method for controlled positioning of individual QDs and QD-based extended nanostructures, is proposed in this work. The studies carried out in the framework of this thesis provide not only a deeper insight into the microscopic processes governing the heteroepitaxial self-assembly of CdSe/ZnSe(001) QDs, but also concrete approaches to achieve, optimize, and control several technologically-important features of QD-ensembles. Reduction and control of QD-areal-density, pronounced vertical correlation of distinctly-defined QDs in QD-superlattices, and self-assembly of QD-based extended structures, as demonstrated in this work, might turn out to be beneficial for envisioned applications in information-, and communication-technologies.
In this work, the laser control of molecules was investigated theoretically. In doing so, emphasis was layed on entering vectorial properties and in particular the orientation in the laboratory frame. Therefore, the rotational degree of freedom had to be included in the quantum mechanical description. The coupled vibrational and rotational dynamics was examined, which is usually not done in coherent control theory. Local control theory was applied, where the field is determined from the dynamics of a system, which reacts with an instantaneous response to the perturbation and, in turn, determines the field again. Thus, the field is entangled with the quantum mechanical motion and the presented examples document, that this leads to an intuitive interpretation of the fields in terms of the underlying molecular dynamics. The limiting case of a classical treatment was shown to give similar results and hence, eases to understand the complicated structure of the control fields. In a different approach, the phase- and amplitude shaping of laser fields was systematically studied in the context of controlling population transfer in molecules.
Performance Evaluation of Efficient Resource Management Concepts for Next Generation IP Networks
(2007)
Next generation networks (NGNs) must integrate the services of current circuit-switched telephone networks and packet-switched data networks. This convergence towards a unified communication infrastructure necessitates from the high capital expenditures (CAPEX) and operational expenditures (OPEX) due to the coexistence of separate networks for voice and data. In the end, NGNs must offer the same services as these legacy networks and, therefore, they must provide a low-cost packet-switched solution with real-time transport capabilities for telephony and multimedia applications. In addition, NGNs must be fault-tolerant to guarantee user satisfaction and to support business-critical processes also in case of network failures. A key technology for the operation of NGNs is the Internet Protocol (IP) which evolved to a common and well accepted standard for networking in the Internet during the last 25 years. There are two basically different approaches to achieve QoS in IP networks. With capacity overprovisioning (CO), an IP network is equipped with sufficient bandwidth such that network congestion becomes very unlikely and QoS is maintained most of the time. The second option to achieve QoS in IP networks is admission control (AC). AC represents a network-inherent intelligence that admits real-time traffic flows to a single link or an entire network only if enough resources are available such that the requirements on packet loss and delay can be met. Otherwise, the request of a new flow is blocked. This work focuses on resource management and control mechanisms for NGNs, in particular on AC and associated bandwidth allocation methods. The first contribution consists of a new link-oriented AC method called experience-based admission control (EBAC) which is a hybrid approach dealing with the problems inherent to conventional AC mechanisms like parameter-based or measurement-based AC (PBAC/MBAC). PBAC provides good QoS but suffers from poor resource utilization and, vice versa, MBAC uses resources efficiently but is susceptible to QoS violations. Hence, EBAC aims at increasing the resource efficiency while maintaining the QoS which increases the revenues of ISPs and postpones their CAPEX for infrastructure upgrades. To show the advantages of EBAC, we first review today’s AC approaches and then develop the concept of EBAC. EBAC is a simple mechanism that safely overbooks the capacity of a single link to increase its resource utilization. We evaluate the performance of EBAC by its simulation under various traffic conditions. The second contribution concerns dynamic resource allocation in transport networks which implement a specific network admission control (NAC) architecture. In general, the performance of different NAC systems may be evaluated by conventional methods such as call blocking analysis which has often been applied in the context of multi-service asynchronous transfer mode (ATM) networks. However, to yield more practical results than abstract blocking probabilities, we propose a new method to compare different AC approaches by their respective bandwidth requirements. To present our new method for comparing different AC systems, we first give an overview of network resource management (NRM) in general. Then we present the concept of adaptive bandwidth allocation (ABA) in capacity tunnels and illustrate the analytical performance evaluation framework to compare different AC systems by their capacity requirements. Different network characteristics influence the performance of ABA. Therefore, the impact of various traffic demand models and tunnel implementations, and the influence of resilience requirements is investigated. In conclusion, the resources in NGNs must be exclusively dedicated to admitted traffic to guarantee QoS. For that purpose, robust and efficient concepts for NRM are required to control the requested bandwidth with regard to the available transmission capacity. Sophisticated AC will be a key function for NRM in NGNs and, therefore, efficient resource management concepts like experience-based admission control and adaptive bandwidth allocation for admission-controlled capacity tunnels, as presented in this work are appealing for NGN solutions.
NO has been described as an important component involved in the development of the hypersensitive reaction (Delledonne et.al., 1998). Furthermore, NO induces expression of a set of defence gene, such as PR-1, PAL1 and chalcone synthase (CHS), and accumulation of SA (Durner et al., 1998). In this study, transgenic plants with altered NO levels were used to study the role of NO in plant defence. Arabidopsis plants which, due to expression of a bacterial NO dioxygenase, exhibit lower levels of NO than wild-type plants, show several weakened defence response, including the oxidative burst and expression of phenylpropanoid pathway genes. By contrast, constitutive expression of a bacterial NO synthase in Arabisopsis results in increased levels of endogenous NO. However, these plants do not show constitutively activated defence responses, but suffer from increased susceptibility to various strains of P. syringae. This might indicate that a gradient in NO production rather than constitutive elevation of NO is necessary to trigger plant defence responses. Nevertheless, NO seems to be important for regulation of the oxidative state in plant cells. This function of NO is important during leaf senescence. The data of the present work indicate that NO acts as senescence-delaying factor during plant development. The molecular action of NO in plants and signalling cascades in which NO is involved as second messenger are still poorly understood. Experiments addressing the selective quantification of NO in intact plant tissue, the identification of NO-target proteins as well as the function of NO-modified biomolecules might help to understand the role of NO in plants. Non-host resistance consists of several layers of defence that include preformed compounds existing in plants before pathogen infection and induced defences which the plant activates after recognition of a pathogen. The role of inducible defences in preventing multiplication of non-adapted bacteria is not clear. Our experiments suggest that to restrict non-adapted bacterial growth, pre-formed antimicrobial compounds and an early inducible cell wall-based defence might play an important role in Arabidopsis leaves. Upon inoculation with non-adapted bacteria, we have observed early, TTSS-independent up-regulation of PAL1 and BCB, two lignin biosynthesis genes which might be involved in papilla formation or other kinds of cell wall fortification. Moreover, Arabidopsis pal1 knockout lines permit significantly higher survival of non-adapted bacteria in leaves than wild-type plants, suggesting a functional importance of PAL1 up-regulation. Although non-host bacteria, like host bacteria, induce accumulation of SA and PR gene expression in a TTSS-dependent manner, SA-dependent or JA/ET-dependent defences do not directly contribute to non-host resistance. Moreover, non-adapted bacteria activate similar defence signalling pathways as do host bacteria. However, because of varieties in effector protein composition between different non-adapted bacterial strains, the activated signalling pathways might also include different compounds. The Arabidopsis ecotype Ler 0 is more susceptible to a non-adapted strain of P. syringae than ecotype Col-0. Although differences in glucosinolate content and composition between those ecotypes exist, they are probably not a major reason for the observed difference in non-host resistance. To further understand the mechanisms underlying non-host resistance, the generation of double or triple mutants with deficits in both cell wall-based defences and SA-dependent signal cascades is necessary. Moreover, the study of genome polymorphism and composition of secondary metabolites between Ler-0 and Col-0 can shed new light into the mechanisms of non-host resistance against bacterial pathogens. Additionally, experiments addressing papilla formation and callose biosynthesis in Ler-0 and Col-0 could help to further elucidate bacterial non-host resistance. Our data indicate that localized contact of Arabidopsis leaves with non-adapted bacteria, type III secretion-defective P. syringae strains and bacterial pathogen-associated molecular patterns (PAMPs) induce systemic acquired resistance (SAR) at the whole plant level. This finding contrasts the general belief that an HR or other leaf necroses are required for SAR induction. The observed symptomless systemic response was abolished in all SAR-deficient mutants tested in this study, but was intact in the jar1 mutant, which is compromised in induction of ISR, indicating that non-host bacteria and PAMPs induce SAR in a mechanistically similar way than host bacteria. In addition, our data show that the extent of SA accumulation or PR gene expression induced at sites of virulent or avirulent P. syringae inoculation rather than the amount of tissue necroses or jasmonate accumulation determine the magnitude of SAR. The fact that systemic responses were also triggered after local treatment with type III secretion-defective P. syringae strains and bacterial PAMPs indicate that induction of SAR is TTSS-independent. Instead, recognition of general elicitors like flagellin and LPS play an important role in activation of the SAR process. To broaden the concept of PAMP-based SAR initiation, further general elicitors from bacteria and fungal pathogens should be tested for their capability to induce SAR. Screens for mutants with deficiency in SAR activation by individual PAMPs can help to identify new components involved in the SAR signalling cascade. Possible functions of PAMPs as mobile systemic signals should be tested in future experiments. By selection of candidate genes whose expression is up-regulated in Arabidopsis leaves infected with avirulent and virulent P. syringae and pathophysiological analyses of corresponding T-DNA knockout lines, FLAVIN-DEPENDENT MONOOXYGENASE1 (FMO1) was identified as a key SAR regulator. SAR triggered by P. syringae is completely abolished in fmo1 mutant plants, and pathogen-induced expression of FMO1 in systemic leaves is closely correlated with the capability of different Arabidopsis lines to develop SAR. According to our findings, we have proposed that the FMO1 acts in signal amplification in non-inoculated, systemic leaves to trigger SAR. Experimental verification of the postulated potential amplification cycle underlying SAR should be tested in future experiments. The generation of transgenic lines expressing FMO1::GFP will provide useful information about the cellular localization of the FMO1 protein. Moreover, a comparative metabolomic analysis using SAR-induced wild-type, fmo1 knockout and FMO1 overexpressing lines can be used to identify substrates and reaction products of the FMO1 monooxygenase. As the single yeast FMO (yFMO) provides oxidizing equivalents at the ER for correct protein folding, expression of FMO1 in yfmo mutant yeast combined with protein activity assays might indicate whether FMO1 exhibits functional similarities with yeast FMO, e.g. in assuring proper folding of ER-targeted proteins essential for SAR establishment. Identification of further genes involved in activation of systemic resistance and biochemical characterization of the corresponding proteins can help to understand the SAR process in more detail.
Background: According to the classical model of Macevicz and Oster, annual eusocial insects should show a clear dichotomous "bang-bang" strategy of resource allocation; colony fitness is maximised when a period of pure colony growth (exclusive production of workers) is followed by a single reproductive period characterised by the exclusive production of sexuals. However, in several species graded investment strategies with a simultaneous production of workers and sexuals have been observed. Such deviations from the "bang-bang" strategy are usually interpreted as an adaptive (bet-hedging) response to environmental fluctuations such as variation in season length or food availability. To generate predictions about the optimal investment pattern of insect colonies in fluctuating environments, we slightly modified Macevicz and Oster's classical model of annual colony dynamics and used a dynamic programming approach nested into a recurrence procedure for the solution of the stochastic optimal control problem. Results: 1) The optimal switching time between pure colony growth and the exclusive production of sexuals decreases with increasing environmental variance. 2) Yet, for reasonable levels of environmental fluctuations no deviation from the typical bang-bang strategy is predicted. 3) Model calculations for the halictid bee Lasioglossum malachurum reveal that bet-hedging is not likely to be the reason for the graded allocation into sexuals versus workers observed in this species. 4) When environmental variance reaches a critical level our model predicts an abrupt change from dichotomous behaviour to graded allocation strategies, but the transition between colony growth and production of sexuals is not necessarily monotonic. Both, the critical level of environmental variance as well as the characteristic pattern of resource allocation strongly depend on the type of function used to describe environmental fluctuations. Conclusion: Up to now bet-hedging as an evolutionary response to variation in season length has been the main argument to explain field observations of graded resource allocation in annual eusocial insect species. However, our model shows that the effect of moderate fluctuations of environmental conditions does not select for deviation from the classical bang-bang strategy and that the evolution of graded allocation strategies can be triggered only by extreme fluctuations. Detailed quantitative observations on resource allocation in eusocial insects are needed to analyse the relevance of alternative explanations, e.g. logistic colony growth or reproductive conflict between queen and workers, for the evolution of graded allocation strategies.
Sumoylation of transcription factors modulate their activity (either upregulating or downregulating) by altering protein-protein interactions as well as subcelluar/subnuclear localization. The transcription factor family of NFAT (Nuclear Factor of Activated T cells) plays an important role in cytokine gene regulation in T cells. Due to alternative usage of two promoters (P1 & P2), two polyadenylation sites (pA1 and pA2) and alternative splicing events, NFATc1 is expressed in six isoforms which are NFATc1/alphaA, betaA, alphaB, betaB, alphaC and betaC, where alpha and beta refer to two different 1st exons and A, B, C to the differentially spliced and extended C-termini. The short isoforms of NFATc1 (NF-ATc1/A) contain a relatively short C terminus whereas, the longer isoforms, B and C, span the extra C-terminal peptides of 128 and 246 aa, respectively. To analyze the specific biological effects of NFATc1 isoform, a yeast two hybrid screening of a human spleen cDNA library with extra C-terminal peptide of NFATc1 as a bait, was performed. At the end of the assay, the proteins involved in the sumoylation pathway such as Ubc9, PIAS1 were detected with highest frequencies and subsequently were were able to demonstrate that NFATc1 is sumoylated. The extent of sumoylation is isoform specific. While NFATc1/A, harboring only one sumoylation site, shows very weak sumoylation, the two additional sites within NFATc1/C lead to efficient sumoylation. This modification directs NFATc1/C into SUMO-1 bodies, which in turn colocalize with PML-nbs. Furthermore, sumoylated NFATc1/C recruits the transcriptional co-repressors HDAC (both class I as well as class II HDACs) which results in a significant decrease of the level of histone acetylation on the IL-2 promoter, an important NFATc1 target gene. As a consequence of this, a decrease of IL-2 production was observed, while NFATc1/C, which can no longer be sumoylated due to mutating the target lysines, exhibited dramatic elevated transcriptional potential on the IL2 promoter. This supports our finding from IL-2 promoter-driven reporter gene assay, which shows downregulation of NFATc1/C transactivation upon sumoylation. Hence, sumoylation exerts a negative effect on NFATc1 transcriptioanl activity. Immunofluorescence studies showed SUMO modification to relocate NFATc1/C also into transcriptionally inactive heterochromatin regions, demonstrated by H3K9 m3 (tri-methylated histone lysine 9) colocalization studies. Interestingly, in the absence of sumoylation, NFATc1 was partially colocalized with transcriptional hotspots in the nucleus, which might contribute to the higher transcription potentiality of the non-sumoylated NFATc1. It is important to note that, the transcriptional activity of other NFATc1 target genes (IL-13, IFN-gamma etc.) was positively upregulated upon sumoylation of NFATc1, suggesting a non-universal effect of sumoylation on NFATc1/C function. In conclusion, sumoylation directs NFATc1 into nuclear bodies where it interacts with transcriptional co-repressors and relocalize itself with heterochromatin, leading to repression of NFATc1/C-mediated transcription. Most importantly, the effect of NFATc1/C sumoylation is promoter specific. Taken together, SUMO modification alters the function of NFATc1 from an activator to a site-specific transcriptional repressor. This study unraveled a novel regulatory mechanism, which controls isoform specific NFATc1 function.