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In the context of this thesis, I investigated the molecular causes and functional consequences of genetic instability using a human inherited disease, Fanconi anemia. FA patients display a highly variable clinical phenotype, including congenital abnormalities, progressive bone marrow failure and a high cancer risk. The FA cellular phenotype is characterized by spontaneous and inducible chromosomal instability, and a typical S/G2 phase arrest after exposure to DNA-damaging agents. So far, 13 genes have been identified, whose biallelic (or, in the case of X-linked FANCB, hemizygous) mutations cause this multisystem disorder. The FA proteins interact in a multiprotein network, instrumental and essential in the cellular response to DNA damage. A more comprehensive summary of Fanconi anemia and its myriad clinical, cellular and molecular manifestations is provided in the introduction section of this thesis. The results of my experimental work are presented as published papers and manuscripts ready to be submitted. In the first publication, I investigated the connection between FA genes and bladder tumors. The question I tried to answer was whether a disruption of the FA/BRCA pathway may be a frequent and possibly causal event in bladder cancer, explaining the hypersensitivity of these cells to DNA-crosslinking agents. On the basis of my experimental data I arrived at the conclusion that disruption of the FA/BRCA pathway might be detrimental rather than advantageous for the majority tumor types by rendering them vulnerable towards DNA damaging agents and oxidative stress. The second publication deals with the gene coding for the core complex protein FANCE and tries to answer the question why FANCE is so rarely affected among FA-patients. The conclusion from these studies is that like FANCF, FANCE functions as a probable adaptor protein with a high tolerance towards amino acid substitutions which would explain the relative rareness of FA-E patients. I have also investigated the FANCL gene whose product functions as the catalytic subunit of the E3 ligase. The third publication addresses this issue by providing the first comprehensive description of genetic alterations and phenotypic manifestations in a series of three FA-L patients. The results of my study show that genetic alterations of FANCL are compatible with survival, these alterations may include large deletions such as so far common only in the FANCA gene, FA-L phenotypes can be mild to severe, and FANCL belongs to the group of FA genes that may undergo somatic reversion. The central protein of the FA/BRCA network, FANCD2, is the subject of the fourth publication presented in this thesis. Most importantly, we were able to show that there are no biallelic null mutations in FANCD2. Correspondingly, residual protein of both FANCD2-isotypes (FANCD2-S and FANCD2-L) was present in all available patient cell lines. This suggests that complete abrogation of the FANCD2 protein cannot be tolerated and causes early embryonic lethality. There are at least three FA proteins that are not required for the posttranslational modification of FANCD2. One of these proteins is the 5’-3’ helicase BRIP1 (BRCA1-interacting protein 1), a protein that interacts directly with the breast cancer susceptibility protein BRCA1. I participated in the identification of BRIP1 as the FA protein FANCJ. This discovery is described in the fifth publication of this thesis. The newly discovered protein BRIP1/FANCJ seems to act as one of the mediators of genomic maintenance downstream of FANCD2. Another protein identified downstream of FANCD2 is PALB2. PALB2 was originally discovered as “partner and localizer of BRCA2”. In a candidate gene approach we tested patients with early childhood cancers but without mutations in BRCA2 for mutations in PALB2 (publication 6). PALB2 was identified as a novel FA gene and designated FANCN. FA-N patients are very severely affected. The last publication included in my thesis describes the identification of the FA gene FANCI as the second monoubiquitinated member of the FA/BRCA pathway (publication 7). We identified biallelic mutations in KIAA1794 in four FA patients, thus proving the genuine FA-nature of this candidate sequence. The general discussion provides a synopsis of the results and conclusions of my work with the state of art of FA research.
Oxylipins are important biological active compounds that play essential roles in defense, growth, development, and reproduction of plants and animals. Oxylipins are formed either by enzymatic pathways or radical catalyzed reaction from polyunsaturated fatty acids. Products of oxidation of arachidonic acid (C20:4) in animals by enzymatic and non-enzymatic pathways are prostaglandins and isoprostanes, respectively. In plants, radical catalyzed reaction of -linolenic acid (C18:3) forms phytoprostanes and enzymatic oxidation of this fatty acid produces OPDA and jasmonic acid. Like plants, cyanobacterial membranes contain a high ratio of polyunsaturated fatty acid, about 25% of total fatty acids. Oxylipin biosynthesis and function was studied in two model cyanobacteria, Anabaena PCC 7120 and Synechocystis PCC 6803, for the first time: 1. The filamentous cyanobaterium Anabaena PCC 7120 can naturally produce phytoprostanes type I and II as well as hydroxy fatty acids like in plants but lacks the enzymatic capacity to form jasmonates (12-oxo-phytodienoic acid and jasmonic acid) and prostaglandins. Data obtained provide the first evidence for the occurence of phytoprostanes in cyanobacteria as well as in the baterial kingdom. 2. By GC-MS analysis, the E1- and F1-phytoprostanes in Anabaena PCC 7120 were detected both in free and esterified form. Their levels are comparable with those in plants, in the range of ng/g DW. In one week old cultures, there was no evidence of PPF1 in the medium but its level accumulated up to 142 ng/l in six weeks old cultures. In contrast, PPE1 was stable over time, about 20 ng/g DW. Free cellular PPE1 was found about 4 times higher than that of PPF1, 80.5  23.6 and 24.1  10.9 ng/g DW, respectively. However, there was no significant difference in the total cellular levels of PPF1 and PPE1, ranging from 150 to about 200 ng/g DW. 3. Phytoprostanes are inducible in Anabaena. In the combination of oxidative stress (200 µM H2O2 or 10 µM CuSO4) with high light intensity (330 µE.m-2.s-1) for 8 h, levels of total cellular PPE1 and PPF1 were increased about 2 to 4 times. Interestingly, unlike in higher plants, application of oxidative stress or high light intensity alone showed no phytoprostaneous induction in this cyanobacterium. 4. When Anabaena cells were treated with phytoprostanes, Anabaena cells became remarkably resistant against subsequently applied – otherwise lethal – oxidative stress. All phytoprostanes displayed a high protective effect except for PPE1. The highest protection level was contributed by a mixture of PPA1 type I and II. After preincubation of Anabena cells with 100 µM PPA1–type I/II for 16 h followed by application of 1 mM H2O2 or 50 µM CuSO4 for 5 h, A1-phytoprostane pre-treatment protected 84.2% and 77.5% of the cells from cell death, respectively. Without oxylipins pre-treatment, about 98% of the cells were dead. Surprisingly, preincubation of Anabaena with other oxylipins derived from enzymatic pathway in plants and animals showed also an effect, however, the protection effect was low and ranged from 10 to 30%. In contrast, phytoprostanes did not protect Pseudomonas syringae and Escherichia coli from the toxicity of hydrogen peroxide. However, these bacteria do not synthesize polyunsaturated fatty acids and are therefore devoid of and not exposed to endogenously formed oxidized lipids. 5. Exogenous application of 100 µM PPF1 or 1.5 mM H2O2 for 90 min did not activate the expression of isiA in Anabaena. Oxylipins also displayed no effect on shinorine and tocopherol levels in Anabaena. However, application of 100 µM PPF1 for 6 h altered the protein expression in Anabaena. Most PPF1-modulated proteins are down-regulated and related to photosynthesis. Since oxidative stress only in combination with high light intensity increased lipid peroxidation, down-regulation of photosynthesis after recognition of oxidised lipids (phytoprostanes) may be a survival strategy of Anabaena to avoid damage by peroxidized lipids. 6. Dead plants may be the main source of (exogenous) phytoprostanes in the natural environment of Anabaena. Dry hay releases PPE1 and PPF1 (11 µg/g DW) into an aqueous environment. Anabaena is the typical cyanobacterium in paddy rice fields. After harvesting, most of uneconomical parts of rice plants are abundant on the field, which may release phytoprostanes that in turn might have an impact on cyanobacteria in the rice ecosystems. However, field research is needed to clarify this suspection. 7. A new class of oxylipins, phytoprostanes type III and IV, was identified and quantified in vitro. The two main phytoprostanes, PPE1 and PPF1 (type III and IV), can be obtained by autoxidation of -linolenic acid or Borage oil (containing 25% esterified -linolenic acid). After 12 days of autoxidation and subsequent hydrolysis, 1 g of Borage oil yielded 112.71 ± 1.93 µg of PPF1 and 3.80 ± 0.14 mg of PPE1. PPB1 and PPA1 (type III and IV) were prepared by isomerization and dehydration of PPE1 (type III and IV). The overall yield of PPB1 was 1.71 ± 0.04 mg/g oil (type III) and 2.09 ± 0.12 mg/g oil (type IV). Those of PPA1 were 8.38 ± 0.35 µg/g and 10.18 ± 0.30 µg/oil, respectively. 8. A rapid HPLC-MS/MS method for phytoprostane and phytohormone analysis has been developed. This method was applied to quantify free and esterified E1- and F1-phytoprostanes type III and IV in Synechocystis PCC 6803. The in vivo phytoprostanes type III and IV are present both in free and esterified form. The total cellular level of PPE1 type III and IV in Synechocystis is at least 2 times higher than that of PPF1. Unlike Anabaena, PPE1 and PPF1 were detectable in the medium of one week old Synechocystis cultures. Free levels of PPF1 in the medium (231.8 ± 36.2 ng/l) and in the cells (164.9 ± 15.2 ng/g DW) are lower than those of PPE1 (1003.3 ± 365.2 ng/l and 2331.0 ± 87.7 ng/g DW).
In 2001 the 433 m deep Messel 2001 borehole was drilled in the centre of the Messel Pit, 25 km south of Frankfurt (Germany). Geoscientific results from this drilling clarified the origin of the circular-shaped basin as a maar-diatreme-structure. Recovered deposits consist of lacustrine sediments (0-240 m) and volcaniclastic rocks such as lapilli tuffs (240-373 m) as well as rocks of the underlying diatreme breccia (373 433 m). The lapilli tuffs, as main interest here, show little differentiation on a macro- and microscopic scale and appear as a massive and unsorted volcaniclastic body with dominating juvenile lapilli and accidental clasts mostly in the range of (sub)millimetres to centimetres in diameter. This study presents rock magnetic properties measured on core samples of the volcaniclastic units and explains the origin of downhole magnetic anomalies detected during the drilling project in 2001. Magnetic behaviour of the erupted material is related to fine-grained, Fe-rich (titano)-magnetites, which are dispersed within the juvenile lapilli. Temperature-dependent susceptibility experiments, isothermal remanent magnetisation and hysteresis investigations demonstrate similar ferrimagnetic properties throughout the volcaniclastic material, in terms of composition, coercivity and grain size (pseudo-single-domain particles) of the ferrimagnetic minerals. Thus, during emplacement of the erupted material, the ferrimagnetic minerals had the same remanence acquisition potential. However, demagnetisation experiments show different magnetic stability behaviour of the acquired natural remanent magnetisation (NRM). Heating experiments prove the acquisition of thermal remanent magnetisation (TRM) dominated by temperature effects which could have been occurred during eruption and deposition of volcanic material, forming the Messel maar-diatreme. It is assumed that the upper half of the lapilli tuffs was deposited at relatively low depositional temperatures (<300 °C), whereas the material of the lower half took advantage of higher temperatures (>>300 °C). To understand the rock magnetic character within the Messel maar-diatreme-facies, particle grain sizes, the degree of the relative fraction dominance and the shape of the juvenile fragments have been studied in more detail. Image analytical methods as well as major and trace element analyses on the juvenile fraction support the clear subdivision of the lapilli tuffs. These findings in combination with rockmagnetic data indicate a separation into a relatively hot, geochemically undifferentiated eruption phase and a colder, differentiated phase. A two-condition eruption stage at the end of the Messel volcanic activity is suggested. The juvenile particles account for the temperature evolution and heat conditions during deposition of the Messel tuffs and contribute to the origin of magnetic field anomalies. Based on gravity parameters and the results of magnetisation properties, the potential field 3D-model of the Messel subsurface explains the negative ground anomalies, calculates the mass and volume parameters of the drilled lithozones and shows the asymmetric appearance of the diatreme-structure.
The covalent linkage of the aryloxy-substituents through macrocyclisation was applied for the synthesis of perylene bisimide atropo-enantiomers. The synthesis of macrocyclic perylene bisimides was achieved by using a tetra(3-hydroxyphenoxy)-functionalized perylene bisimide with achiral 2,6-diisopropylphenyl as imide substituent through Williamson´s etherfication which could be realized for four different oligoethylene glycol bridging units. Two regioisomeric macrocycles, namely the diagonally bridged (1,7- and 6,12- linkage) and the laterally bridged (1,12- and 6,7-linkage) isomers, were obtained for each bridging unit. The structural assignment of the isolated regioisomeric macrocycles was unambiguously accomplished by X-ray analysis of two macrocycles and by 1H NMR spectroscopy for all isomers. The conformational influence of the aryloxy-substituents on the functional properties of this class of chromophores could be derived by comparison of the optical and electrochemical properties of all isolated macrocylces with those of an open-chained reference compound. It was shown that the aryloxy-substituents prefer a lateral conformation in solution. Furthermore, solvent dependent fluorescence studies indicated that a photoinduced electron transfer process is of importance for the fluorescence quenching of electron-rich aryloxy-substituted perylene bisimides. The resolution of the atropo-diastereomers of diagonally bridged macrocyclic perylene bisimides with chiral 2-(R)-octylamine as imide substituent and diethylene glycol bridging units could be accomplished by semi-preparative HPLC on a chiral column. The chiroptical properties of the isolated epimerically pure macrocycles were determined by CD spectroscopy. Based on the experimental CD spectra, the stereochemical assignment of the isolated epimers was accomplished by application of the excition chirality method and confirmed by quantum chemical calculation of the CD spectra. The synthetical concept was extended successfully to 1,7-diaryloxy-substituted perylene bisimides. The structure of the diagonally bridged macrocycle was unambiguously confirmed by X-ray analysis and NMR spectroscopy. The atropo-enantiomers of this macrocycle could be resolved by semi-preparative HPLC on a chiral column and the assignment of the absolute configuration was achieved by comparison of the CD spectra of the resolved enantiomers with those of epimerically pure bis(macrocycles) reported before. By comparison of the X-ray structures obtained for the racemic mixture as well as one enantiomer important information could be extracted for the formation of p-dimers of perylene bisimides. The dependence of the interconversion barrier on the bulkiness of the bay-substituents was investigated for four halogen-substituted perylene bisimides. The dynamic properties were investigated by temperature-dependent NMR spectroscopy and kinectic measurements using CD spectroscopy. By applying the concept of the “apparent overlap” a convincing linear relationship between the size of the substituents and the free enthalpy of activation could be derived. Furthermore, the resolution of the atropo-diastereomers or enantiomers of the tetrachloro and tetrabromo-substituted derivates was accomplished, whereupon especially the 1,6,7,12-tetrabromosubstituted perylene bisimide provided at room temperature stable enantiomers. Additionally, the derived structure-property relationship allows the design of conformationally stable perylene bisimide enantiomers by proper choice of the bay substituents. In order to utilize the reversibility of self-assembly for the quantitative formation of macrocyclic perylene bisimides, a tetrazinc porphyrin-functionalized perylene bisimide was synthesized. The self-assembly of the zinc porphyrin perylene bisimide bichromophoric building block and diazabicyclo-[2.2.2]-undecane into the desired 1:2 sandwich complex was investigated by UV/Vis and 1H NMR spectroscopy and the macrocyclic structure was unequivocally proven by diffusion-ordered NMR spectroscopy (DOSY NMR). Furthermore, the controlled deposition of these well-defined macrocycles on highly ordered pyrolitic graphite (HOPG) was demonstrated by atomic force microscopy (AFM) investigations. The alignment of a linear amino functionalised p-conjugated polymers upon addition of the bichromphoric tetrazinc porphyrin-perylene bisimide was investigated by UV/Vis spectroscopy and AFM measurement. The surface analysis by AFM investigations revealed that the bichromophoric system composed of perylene bisimide and zinc porphyrin is able to cross-link the linear p-conjugated polymer over a wide range of the graphite surface which provided a defined arrangement of three different functional p-systems.
B cells play diverse roles in the immunopathogensis of autoimmune diseases several approaches targeting B cell directly or indirectly are in clinical practice in the treatment of autoimmunity. In this regard, temporal B cell depletion by rituximab (anti CD20 antibody) is being appreciated and gaining more importance in recent years. To date, little is known about the regeneration profile of B cells following B cell depletion. We wanted to investigate the early replenishing B cells and examine the dynamic changes in the repertoire. we studied the immunoglobulin receptor (IgR) modulation of Ig-VH4 genes as representative of the heavy chain family. Five patients were included in the study and therapy induced alterations were assessed. Three time points namely before therapy, early regeneration phase (ERP- the early time point during regeneration where just above 1% B cells were found in the peripheral lymphocyte pool) and later regeneration phase (LRP- which commenced 2-3 months following ERP) were chosen. In three patients (A-C), Ig-VH4 genes were amplified from total genomic DNA during the above-mentioned all time points and in another two patients (D and E), Ig genes during ERP were studied by single cell amplification technique. Firstly, B cell regeneration followed the characteristic regeneration pattern as reported by several groups, with a predominant circulation of CD38hi expressing plasma cells and immature B cells in the ERP. During LRP, the proportion of these cells reduced relatively and the levels of naïve B cells rose gradually. On a molecular level, Ig-VH4 variable gene usage prior and post B cell depletion was determined and it was noticed that a diverse set of Ig-VH4 genes were employed in the repertoire before and after therapy. Mini gene segments such as VH4-34 and VH-4-39, which were reported to be connected with autoimmunity, were over expressed in the B cell repertoire before therapy. Profound changes were noticed in the early reemerging repertoire with a relatively increased population of intensely mutated B cells. These B cells acquired >=9 mutations in the Ig genes. Immunophenotyping with specific surface markers revealed that these highly mutated B cells evolve from the isotype-switched memory compartment especially the plasma cells. To support the hypothesis that the highly mutated B cells observed during ERP were plasma cells we carried out single cell amplification of individual plasma cells in another two patients during ERP and compared the mutational load, which remained similar. Actually plasma cells do not express CD20 on their surface and are not eliminated by rituximab therapy. However they were not observed in the peripheral blood following B cell depletion. The earliest time point when plasma cells are found again in peripheral circulation is the early recovery period (ERP). Therefore, it was intriguing to ascertain if the plasma cells were also modulated by rituximab therapy although they were not directly targeted by the therapy. We investigated if there is a therapy mediated mutational modulation of the plasma cells though these are not directly targeted by the therapy. We examined the confinement of mutations to the pre-defined RGYW/WRCY hotspot motifs (R=purine, Y=pyrimidine, W=A/T) in the plasma cells, which provides information on the involvement of T cells in B cell somatic hypermutation (SHM). Plasma cells before rituximab manifested the characteristics of active disease, which was revealed by restricted mutational targeting to the RGYW/WRCY motifs. The reemerging plasma cells during ERP had an increased targeting of the RGYW/WRCY motifs which indicated for a more pronounced T cell mediated B cell mutations which is the scenario observed in the healthy subjects. To further support the hypothesis of rituximab-mediated plasma cell modulation, we delineated the replacement to silent mutations ratio (R/S) in the hypervariable regions (CDRs) of the plasma cell Ig sequences. Within our study, the mean R/S ratio in the plasma cell CDRs of the patient group was relatively low (1.87) before rituximab treatment and interestingly this ratio increased significantly in the recirculating plasma cells to values of 2.67 and 3.60 in ERP and LRP status respectively. The increase in R/S ratios in reemerging plasma cells can be interpreted as a shaping of the Ig-repertoire by positive antigen selection as seen in healthy individuals. To conclude, our study demonstrates temporal B cell depletion by rituximab therapy seems to modulate also the plasma cell compartment, which is not directly targeted by the therapy. Modulation of plasma cells in RA could be also used as a potential biomarker in studying the effective response in RA treatment. This needs to be further explored to gain deeper insights into the underlying processes, which may be influenced by future therapies.
Ferromagnetic semiconductors (FS) promise the integration of magnetic memory functionalities and semiconductor information processing into the same material system. The prototypical FS (Ga,Mn)As has become the focus of semiconductor spintronics research over the past years. The spin-orbit mediated coupling of magnetic and semiconductor properties in this material gives rise to many novel transport-related phenomena which can be harnessed for device applications. In this thesis we address challenges faced in the development of an all-semiconductor memory architecture. A starting point for information storage in FS is the knowledge of their detailed magnetic anisotropy. The first part of this thesis concentrates on the investigation of the magnetization behaviour in compressively strained (Ga,Mn)As by electrical means. The angle between current and magnetization is monitored in magnetoresistance(MR) measurements along many in-plane directions using the Anisotropic MR(AMR) or Planar Hall effect(PHE). It is shown, that a full angular set of such measurements displayed in a color coded resistance polar plot can be used to identify and quantitatively determine the symmetry components of the magnetic anisotropy of (Ga,Mn)As at 4 K. We compile such "anisotropy fingerprints" for many (Ga,Mn)As layers from Wuerzburg and other laboratories and find the presence of three symmetry terms in all layers. The biaxial anisotropy term with easy axes along the [100] and [010] crystal direction dominates the magnetic behaviour. An additional uniaxial term with an anisotropy constant of ~10% of the biaxial one has its easy axis along either of the two <110> directions. A second contribution of uniaxial symmetry with easy axis along one of the biaxial easy axes has a strength of only ~1% of the biaxial anisotropy and is therefore barely visible in standard SQUID measurements. An all-electrical writing scheme would be desirable for commercialization. We report on a current assisted magnetization manipulation experiment in a lateral (Ga,Mn)As nanodevice at 4 K (far below Tc). Reading out the large resistance signal from DW that are confined in nanoconstrictions, we demonstrate the current assisted magnetization switching of a small central island through a hole mediated spin transfer from the adjacent leads. One possible non-perturbative read-out scheme for FS memory devices could be the recently discovered Tunneling Anisotropic MagnetoResistance (TAMR) effect. Here we clarify the origin of the large amplification of the TAMR amplitude in a device with an epitaxial GaAs tunnel barrier at low temperatures. We prove with the help of density of states spectroscopy that a thin (Ga,Mn)As injector layer undergoes a metal insulator transition upon a change of the magnetization direction in the layer plane. The two states can be distinguished by their typical power law behaviour in the measured conductance vs voltage tunneling spectra. While all hereto demonstrated (Ga,Mn)As devices inherited their anisotropic magnetic properties from their parent FS layer, more sophisticated FS architectures will require locally defined FS elements of different magnetic anisotropy on the same wafer. We show that shape anisotropy is not applicable in FS because of their low volume magnetization. We present a method to lithographically engineer the magnetic anisotropy of (Ga,Mn)As by submicron patterning. Anisotropic strain relaxation in submicron bar structures (nanobars) and the related deformation of the crystal lattice introduce a new uniaxial anisotropy term in the energy equation. We demonstrate by both SQUID and transport investigations that this lithographically induced uniaxial anisotropy overwrites the intrinsic biaxial anisotropy at all temperatures up to Tc. The final section of the thesis combines all the above into a novel device scheme. We use anisotropy engineering to fabricate two orthogonal, magnetically uniaxial, nanobars which are electrically connected through a constriction. We find that the constriction resistance depends on the relative orientation of the nanobar magnetizations, which can be written by an in-plane magnetic field. This effect can be explained with the AMR effect in connection with the field line patterns in the respective states. The device offers a novel non-volatile information storage scheme and a corresponding non-perturbative read-out method. The read out signal is shown to increase drastically in samples with partly depleted constriction region. This could be shown to originate in a magnetization direction driven metal insulator transition of the material in the constriction region.
Interleukin-5 (IL-5) is a member of the hematopoietic class I cytokines and is specifically involved in eosinophil activation. IL-5 plays an important role in disease conditions such as allergic asthma and other hypereosinophilias, which are characterized by highly increased levels of eosinophils in peripheral blood and tissues. The IL-5 receptor is a heterodimer consisting of a binding alpha subunit (IL- 5Rα) and a common beta subunit (IL-5Rβ). This IL-5Rβ is shared with the IL-3 and GM-CSF receptors. The IL-5Rα is required for ligand-specific binding, whereas the association of the IL-5Rβ subunit triggers intracellular signal transduction. Previous studies have described the crystallographic structure of human IL-5 (hIL-5), as well as that of the common IL-5Rβ chain (IL-5Rβc) However, no experimental structural data are yet available for the interaction of the high-affinity IL-5 receptor IL-5Rα with its ligand IL-5. Therefore, this thesis had the principle objective to gain new insights into the basis of this important agonist-receptor interaction. In particular, data on the recombinant expression, purification and preparation of the binary complex of hIL-5 bound to the receptor ectodomain of hIL-5Rα are shown, as well as the subsequent crystal structure analysis of the binary ligand-receptor (hIL-5Rα/hIL-5) complex. Both proteins were expressed in an Escherichia coli expression system, purified to homogeneity, and crystallized. However, since the initial analysis of these crystals did not show any X-ray diffraction, each step of the preparation and crystallization procedure had to be stepwise optimized. Several improvements proved to be crucial for obtaining crystals suitable for structure analysis. A free cysteine residue in the N-terminal domain of the hIL-5Rα ectodomain protein was mutated to alanine to remove protein heterogeneity. In addition, hIL-5 affinity chromatography of the receptor protein proved to be absolutely crucial for crystal quality. Additive screening using the initial crystallization condition finally yielded crystals of the binary complex, which diffracted to 2.5Å resolution and were suitable for structure analysis. The preliminary structure data demonstrate a new receptor architecture for the IL-5Rα ligand-binding domain, which has no similarities to other cytokine class I receptor structures known so far. The complex structure demonstrates that the ligand-binding region of human IL-5Rα is dispersed over all three extracellular domains, and adopts a binding topology in which the cytokine recognition motif (CRM) needs the first Fn-III domain of the human IL-5Rα to bind the ligand. In a second project, a prokaryotic expression system for murine IL-5 (mIL-5) was established to allow the production of mIL-5 and mIL-5 antagonist that should facilitate functional studies in mice. Since the expression of mIL-5 in E. coli had never been successful so far, a fusion protein system was generated expressing high yields of mIL-5. Chemical cleavage with cyanogen bromide (CNBr) was used to release mIL-5 monomers, which were subsequently purified and refolded. This technique yielded an active murine IL-5 dimer as confirmed by TF-1 cell proliferation assays. The protein was crystallized and the structure of mIL-5 could be determined at 2.5Å resolution. The molecular structure revealed a symmetrical left-handed four helices bundle dimer similar to human IL-5. Analysis of the structure-/function relationship allowed us to design specific mIL-5 antagonist molecules, which are still under examination. Taken together, these findings provide further insights in the IL-5 and IL-5R interaction which may help to further understand and depict this and other cytokine-receptor interactions of similar architecture, e.g. the IL-13 ligand-receptor system. Ultimately, this may represent another piece of puzzle in the attempts to rationally design and engineer novel IL-5-related pharmacological therapeutics.
Questions: What are the relative contributions of kin selection and individual selection to the evolution of dispersal rates in fragmented landscapes? How do environmental parameters influence the relative contributions of both evolutionary forces? Features of the model: Individual-based simulation model of a metapopulation. Logistic local growth dynamics and density-dependent dispersal. An optional shuffling algorithm allows the continuous destruction of any genetic structure in the metapopulation. Ranges of key variables: Depending on dispersal mortality (0.05-0.4) and the strength of environmental fluctuations, mean dispersal probability varied between 0.05 and 0.5. Conclusions: For local population sizes of 100 individuals, kin selection alone could account for dispersal probabilities of up to 0.1. It may result in a ten-fold increase of optimal dispersal rates compared with those predicted on the basis of individual selection alone. Such a substantial contribution of kin selection to dispersal is restricted to cases where the overall dispersal probabilities are small (textless 0.1). In the latter case, as much as 30% of the total fitness of dispersing individuals could arise from the increased reproduction of kin left in the natal patch.
Abiotic environmental stress, as evoked by short-term exposure of greenhousegrown plants to ambient ultraviolet radiation (UV), induces chemical and morphological adaptations of plants. Responses depend on the strength of stress and differ between species and tissues of variable age. In two Brassicaceae, Sinapis alba and Nasturtium officinale, stress responses towards short-term exposure to ambient radiation including or excluding UV reveal a high phenotypic plasticity, with strong differences their chemical composition compared to plants that remained in the greenhouse. The most pronounced defensive response against UV, the accumulation of flavonoid pigments, was strongest in young UV-exposed leaves, with an increase of the more effectice flavonol quercetin on the expense of less effectice kaempferol. Glucosinolates and myrosinase enzymes showed highly species-specific responses to UV-stress. Feeding behaviour and larval performance of the oligophagous Brassicaceae specialist, Phaedon cochleariae (Chrysomelidae; Coleoptera) were poorly affected by these differently UV-exposed host plants. Effects of plant stress on larval development were restricted to a minor variation in body mass due to variable food conversion of certain larval instars, which were compensated until pupation. Moreover, larval developmental times were unaffected by UV-exposure, but varied between species and leaves of different age. For P. cochleariae, this lack of variation in larval and pupal development towards UV-altered phytochemistry may suggest a strong genetic fixation of life history traits. In combination, the high plasticity towards variable food quality may correspond to the beetles’s specialisation on a narrow range of chemically highly variable host plants. Apart from being involved in plant defence against generalist herbivores, glucosinolates may also act as recognition cues and feeding stimulants for specialist insects. In earlier studies, glucosinolates were assumed to stimulate feeding by P. cochleariae, and they were suggested to be present on outermost leaf surfaces. However, since these findings were based on crude extraction methods, the presence of feeding stimulants in epicuticular waxes of Brassicaceae was re-investigated. In our study, glucosinolates were not detectable in mechanically removed waxes in Brassica napus and N. officinale, whereas substrate concentrations in solvent leaf extracts corresponded to densities and closure of leaf surface stomata. Therefore, glucosinolates that originate from the mesophyll may have been washed out through open stomata. Neither leaf waxes, nor leaf waxes combined with sinigrin or pure sinigrin evoked feeding. Moreover, in choice tests, these leaf beetles clearly preferred to feed on de-waxed surfaces. Finally, the presence of feeding stimulants in epicuticular waxes is highly unlikely considering the physico-chemical properties of the plant cuticle. The lack of stimulants on the outermost surface corresponds to the plant’s perspective, which should avoid easily accessible feeding stimulants. Nevertheless, the role of glucosinolates for feeding stimulation of P. cochleariae remained unclear. Therefore, S. alba leaf extracts of different polarities were tested in bioassays in order to identify which chemical leaf compounds act as stimulants. In bioassay-guided fractionations of methanol extracts by semi-preparative HPLC, two distinct fractions with stimulating activity were detected, whereas other fractions were not effective. Flavonoids were identified as main component in one stimulating fractions, the second fraction mainly contained glucosinolates, including sinalbin. The combination of both fractions was significantly more stimulating than each individual fraction, indicating additive effects of at least one compound of each fraction. However, since the combined fractions were less effective compared to the original extracts, other compounds may additionally be involved in the complex composition of leaf compounds acting as feeding stimulants for P. cochleariae. Finally, fractionated extracts of UV altered plants were used to test whether the strength of feeding responses depend on different ratios of glucosinolates and flavonoids. However, since the feeding behavior of this leaf beetle was not affected, such quantitative variations were concluded to be less important. The initiation of feeding behaviour may solely depend on the presence of stimulating compounds.
A small percentage (1-5%) of the blood lymphocytes expresses alternative T-cell antigen receptor that uses g and d TCR rearranging genes. A subset of them expresses the Vg9Vd2 TCR. Those cells respond to self-nonpeptide and foreign antigens presented by unknown antigen-presenting molecules. Vg9Vd2 T cells also express Toll-like receptors and natural killer receptors that allow them to respond to other nonpeptide microbial components or to alterations in the expression of stress cell surface ligands such as NKG2D ligands. Vg9Vd2 T cells frequently are regulated by the expression of activating and/or inhibitory NKRs (iNKRs) that can fine-tune their activation threshold and the activating NKG2D receptor is one of the most studied until now. NKG2D, a C-type lectin receptor directed against MICA/MICB and UL16-binding protein (ULBP) molecules, have been reported a powerful co-stimulus for Ag-mediated activation of CD8 and Vg9Vd2 T cells. Indeed, NKG2D is recruited within the Vg9Vd2 TCR immunological synapse and enhances recognition by Vg9Vd2 T cells of Mycobacteria-infected DCs and various MICA/MICB or ULBP hemopoietic and non-hemopoietic tumors. The level of NKG2D is upregulated by inflammatory cytokines (e.g. IL-15), and NKG2D ligands are induced after a physical or genotoxic stress and/or along infection by intracellular pathogens. Therefore, NKG2D is a key stress sensor that strongly enhances recognition of altered or infected self by human gd T cells. Recent progress in the field supports the idea that gd T cells fulfill a role in the innate and adaptative immune response in different way of the conventional ab T cells. We demonstrated direct activation of Vg9Vd2 T cells by NKG2D ligation through the association with DAP10 adapter molecules and independently of TCR-Ag recognition, similar to the NKG2D-mediated activation of NK cells. Culture of peripherical blood mononuclear cells with immobilized NKG2D mAb or NKG2D ligand MICA induces up-regulation of CD69 and CD25 in NK and Vg9Vd2 T cells but not in CD8 T cells. Additionally, the ligation of NKG2D induces in Vg9Vd2 T cells the up-regulation of molecules typical for antigenpresenting cells, such as co-stimulator molecules (CD86) antigen presenting molecules (CD1a, HLA-DR), adhesion molecules (CD54), and activation molecules (CD69). Furthermore, NKG2D ligation in Vg9Vd2 T cells induces the production of cytokines such as TNF-a and chemokines such as, MIP-1a, but cannot induce the production of cytokines such as IL-6 or IFN-g and chemokines such as RANTES, MCP-1 and GM-CSF. In addition, NKG2D triggers the activation of the cytolytic machinery as efficient as CD3 stimulation as shown by measurement of the release of granules with esterase activity (BLT assay), perforin and the up-regulation of CD107a on the surface of Vg9Vd2 T cells. This NKG2D dependent cytolysis has been confirmed using purified Vg9Vd2 T cells, which kill MICA-transduced RMA cells but not the control cells. The TCR independence and NKG2D dependence of this killing is supported by mAb inhibition experiment. Finally, DAP 10, which mediates NKG2D signaling of human NK cells, is found in resting and activated Vg9Vd2 T cells. Moreover, data of intracellular signaling studies suggest an important role of Scr kinases in the NKG2D mediated killing and involvement of DAP-10-PI3K and PLCg 1 pathways as mayor proteins implicated in target cell lysis, and shows remarkable difference with the TCR signaling. The identification of these similarities in NKG2D function between NK and Vg9Vd2 T cells may be of interest for development of new strategies for Vg9Vd2 T cell-based immunotherapy in certain types of cancer and help to understand Vg9Vd2 T cell function in general.
The Ras/RAF/MEK/ERK cascade is a central cellular signal transduction pathway involved in cell proliferation, differentiation, and survival where RAF kinases are pivotal kinases implicated in cancer. The development of specific irreversible kinase inhibitors is a rewarding but difficult aim. CI-1033 was developed to irreversibly inhibit erbB receptor tyrosine kinases by reacting to the Cys113 residue (p38alpha MAP kinase numbering) of the kinase domain. In this study we tried a similar approach to target the RAF oncoproteins which posses a similar cysteine at position 108 in the hinge region between the small n-lobe and the large c-lobe of the kinase domain. A novel synthetic approach including a lyophilization step allowed us the synthesis of a diphenyl urea compound with an epoxide moiety (compound 1). Compound 1 possessed inhibitory activity in vitro. However our time kinetics experiments and mass spectroscopic studies clearly indicate that compound 1 does not react covalently with the cysteine residue in the hinge region. Moreover, in cell culture experiments, a strong activation of the RAF signaling pathway was observed, an effect which is known from several other RAF kinase inhibitors and is here reported for the first time for a diphenyl urea compound, to which the clinically used unspecific kinase inhibitor BAY 43-9006 (Sorafinib, Nexavar) belongs. Although activation was apparently independent on B- and C-RAF hetero-oligomerization in vitro, in vivo experiments support such a mechanism as the activation did not occur in starved knockout cells lacking either B-RAF or C-RAF. Furthermore, we developed a mathematical model of the Ras/RAF/MEK/ERK cascade demonstrating how stimuli induce different signal patterns and thereby different cellular responses, depending on cell type and the ratio between B-RAF and C-RAF. Based on biochemical data for activation and dephosphorylation, we set up differential equations for a dynamical model of the Ras/RAF/MEK/ERK cascade. We find a different signaling pattern and response result for B-RAF (strong activation, sustained signal) and C-RAF (steep activation, transient signal). We further support the significance of such differential modulatory signaling by showing different RAF isoform expression in various cell lines and experimental testing of the predicted kinase activities in B-RAF, C-RAF as well as mutated versions. Additionally the effect of the tumor suppressor DiRas3 (also known as Noey2 or ARHI) on RAF signaling was studied. I could show that DiRas3 down-regulates the mitogenic pathway by inhibition of MEK, a basis for a refined model of the Ras/RAF/MEK/ERK cascade.
Maize seedlings contain high amounts of glucosidically bound 2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one (DIMBOA). The effects of DIMBOA on the feeding behaviour and performance of two noctuids, Spodoptera exigua Hübner and S. frugiperda Smith, were compared. The question was raised whether S. frugiperda, preferring maize and other Poaceae, is better adapted to DIMBOA than S. exigua. In addition, the effects of DIMBOA on the mycelial growth of the plant pathogen Setosphaeria turcica Leonard et Suggs (causal agent of northern corn leaf blight) was assessed in vitro. DIMBOA had an antifeedant effect on S. exigua but stimulated feeding in S. frugiperda in dual-choice experiments. In a no-choice setup, larvae of S. exigua gained less biomass and had a prolonged development when feeding on an artificial diet containing DIMBOA. However, pupal weight was not significantly different between treatments. In contrast, larvae of S. frugiperda were not affected by DIMBOA. Strong detrimental effects of DIMBOA were found on the mycelial growth of the pathogen S. turcica.
Artificial light-harvesting (LH) systems have been obtained by self-assembly of naphthalene diimide-functionalized zinc chlorin dyads and triad in nonpolar, aprotic solvents. UV-vis, CD, and steady-state emission spectroscopy as well as atomic force microscopy showed that rod-like structures are formed by excitonic interactions of zinc chlorin units, while the appended naphthalene diimide dyes do not aggregate at the periphery of the cylinders. In all cases, photoexcitation of the enveloping naphthalene diimides at 540 and 620 nm, respectively, was followed by highly efficient energy-transfer processes to the inner zinc chlorin backbone, as revealed by time-resolved fluorescence spectroscopy on the picosecond time-scale. As a consequence, the LH efficiencies of zinc chlorin rod aggregates were increased by up to 63%. The effective utilization of solar energy recommends these biomimetic systems for an application in electronic materials on the nanoscale.
Microtubules are a fascinating component of the cellular scaffold protein network, the cytoskeleton. These hollow tubular structures are assembled of laterally associated proto-filaments containing ab-tubulin heterodimers in a head to tail arrangement. Accordingly microtubules have a defined polarity, which sets the base for the polarity of the cell. The microtubule lattice can be arranged in two conformations: In the more abundant B-lattice conformation, where the protofilaments interact laterally through a- to a- and b- to b-tubulin contacts and in the less stable A-lattice conformation, where a-tubulin interacts laterally with b-tubulin. In cells the microtubules generally contain 13 protofilaments of which usually one pair interacts in the A-lattice conformation, forming the so-called lattice seam. Microtubule dynamics and interactions are strongly regulated by micro-tubule associate proteins (MAPs). Structural investigations on MAPs and microtubule associated motor proteins in complex with microtubules have become possible in combination with modern electron microscopy (EM) and image processing. We have used biochemistry and different advanced EM techniques to study the interaction between microtubules and the MAP Mal3p in vitro. Mal3p is the sole member of the end-binding protein 1 (EB1) protein family in the fission yeast Schizosaccharomyces pombe. Previous in vivo studies have shown that Mal3p promotes microtubule growth. Our studies with high-resolution unidirectional shadowing EM revealed that Mal3p interacts with the microtubule lattice in a novel way, using binding sites on the microtubule that are different from those reported for other MAPs or motor proteins. Full-length Mal3p preferentially binds between two protofilaments on the microtubule lattice, leaving the rest of the lattice free. A case where Mal3p was found in two adjacent protofilament, revealed an A-lattice conformation on the microtubules, surprisingly indicating specific binding of Mal3p to the microtubule seam. With a lattice enhancer, in form of a b-tubulin binding kinesin motor domain, it was demonstrated that Mal3p stabilizes the seam which is thought to be the weakest part of a microtubule. Further, the presence of Mal3p during microtubule polymerization enhances the closure of protofilament sheets into a tubular organization. Cryo-EM and 3-D helical reconstruction on a monomeric microtubule binding domain of Mal3p, confirm the localization in between the protofilament and result in an accurate localization on the microtubule lattice. The results also indicate Mal3p’s capacity to influence the microtubule lattice conformation. Together, studies approached in vitro demonstrate that an EB1-family homolog not only interacts with the microtubule plus end, but also with the microtubule lattice. The structure of Mal3p interacting with microtubules reveals a new mechanism for microtubule stabilization and further insight on how plus end binding proteins are able promote microtubule growth. These findings further suggest that microtubules exhibit two distinct reaction platforms on their surface that can independently interact with selected MAPs or motors.
This thesis presents an experimental study of the thermoelectrical properties of semiconductor quantum dots (QD). The measurements give information about the interplay between first order tunneling and macroscopic quantum tunneling transport effects in the presence of thermal gradients by the direct comparison of the thermoelectric response and the energy spectrum of the QD. The aim of the thesis is to contribute to the understanding of the charge and spin transport in few-electron quantum dots with respect to potential applications in future quantum computing devices. It also gives new insight into the field of low temperature thermoelectricity. The investigated QDs were defined electrostatically in a two dimensional electron gas (2DEG) formed with a GaAs/(Al,Ga)As heterostructure by means of metallic gate electrodes on top of the heterostructure. Negative voltages with respect to the potential of the 2DEG applied to the gate electrodes were used to deplete the electron gas below them and to form an isolated island of electron gas in the 2DEG which contains a few ten electrons. This QD was electrically connected to the 2DEG via two tunneling barriers. A special electron heating technique was used to create a temperature difference between the two connecting reservoirs across the QD. The resulting thermoelectric voltage was used to study the charge and spin transport processes with respect to the discrete energy spectrum and the magnetic properties of the QD. Such a two dimensional island usually exhibits a discrete energy spectrum, which is comparable to that of atoms. At temperatures below a few degrees Kelvin, the electrostatic charging energy of the QDs exceeds the thermal activation energy of the electrons in the leads, and the transport of electrons through the QD is dominated by electron-electron interaction effects. The measurements clarify the overall line shape of thermopower oscillations and the observed fine structure as well as additional spin effects in the thermoelectrical transport. The observations demonstrate that it is possible to control and optimize the strength and direction of the electronic heat flow on the scale of a single impurity and create spin-correlated thermoelectric transport in nanostructures, where the experimenter has a close control of the exact transport conditions. The results support the assumption that the performance of thermoelectric devices can be enhanced by the adjustment of the QD energy levels and by exploiting the properties of the spin-correlated charge transport via localized, spin-degenerate impurity states. Within this context, spin entropy has been identified as a driving force for the thermoelectric transport in the spin-correlated transport regime in addition to the kinetic contributions. Fundamental considerations, which are based on simple model assumptions, suggest that spin entropy plays an important role in the presence of charge valence fluctuations in the QD. The presented model gives an adequate starting point for future quantitative analysis of the thermoelectricity in the spin-correlated transport regime. These future studies might cover the physics in the limit of single electron QDs or the physics of more complex structures such as QD molecules as well as QD chains. In particular, it should be noted that the experimental investigations of the thermopower of few-electron QDs address questions concerning the entropy transport and entropy production with respect to single-bit information processing operations. These questions are of fundamental physical interest due to their close connection to the problem of minimal energy requirements in communication, and thus ultimately to the so called "Maxwell's demon" with respect to the second law of thermodynamics.
CYR61 and WISP3 belong to the family of CCN-proteins. These proteins are characterised by 10% cysteine residues whose positions are strictly conserved. The proteins are extracellular signalling molecules that can be associated with the extracellular matrix. CCN-proteins function in a cell- and tissue specific overlapping yet distinct manner. CCN-proteins are expressed and function in several cells and tissues of the musculoskeletal system. In this study the impact of the angiogenic inducer cysteine-rich protein 61 (CYR61/CCN1) on endothelial progenitor cells (EPCs) and mesenchymal stem cells (MSCs) as well as the wnt1 inducible signalling pathway protein 3 (WISP3/CCN6) on MSCs were elucidated. EPCs are promising cells to induce neovascularisation in ischemic regions as tissue engineered constructs. A major drawback is the small amount of cells that can be obtained from patients; therefore a stimulating factor to induce in vitro propagation of EPCs is urgently needed. In this study, mononuclear cells obtained from peripheral blood were treated with 0.5 µg/ml CYR61, resulting in an up to 7-fold increased cell number within one week compared to untreated control cells. To characterise if EPCs treated with CYR61 display altered or maintained EPC phenotype, the expression of the established markers CD34, CD133 and KDR as well as the uptake of acLDL and concurrent staining for ulex lectin was analysed. Both CYR61 treated and untreated control cells displayed EPCs characteristics, indicating that CYR61 treatment induces EPC number without altering their phenotype. Further studies revealed that the stimulating effect of CYR61 on EPCs is due to enhanced adhesion, rather than improved proliferation. Usage of mutated CYR61-proteins showed that the adhesive effect is mediated, at least partly, by the integrin α6β1, while the integrin αυβ3 has no influence. Endogenous expression of CYR61 was not detectable in EPCs, which indicated that control cells are not influenced by endogenous secretion of CYR61 and also could explain the dose-dependent effect of CYR61 that is measured at a low concentration of 0.05 µg/ml. MSCs were treated with 0.5 µg/ml CYR61, a combination of growth factors including VEGF, both together and compared to untreated control cells. Matrigel angiogenesis assay revealed an induction of angiogenesis, detected by induced sprouting of the cells, after CYR61 treatment of the MSC. Induced sprouting and vessel like structure formation after CYR61 treatment was similar to the results obtained after treatment with growth factors including the established angiogenesis inducer VEGF. This result clearly demonstrates the angiogenic potential of CYR61 on MSCs. Further studies revealed a migrative and proliferative effect of CYR61 on MSCs. Both properties are crucial for the induction of angiogenesis thus further strengthening the view of CYR61 as an angiogenic inducer. MSCs and EPCs are promising cells for tissue engineering applications in bone remodelling and reconstruction. MSCs due to their potential to differentiate into other lineages; EPCs induce neovascularisation within the construct. Both cell types respond to CYR61 treatment. Furthermore EPCs home to sides were CYR61 expression is detectable and both are induced by similar stimulators. Therefore CYR61 is a promising factor for tissue engineered bone reconstruction applications. WISP3 is expressed in cartilage in vivo and in chondrocytes in vitro. Loss of function mutations in the WISP3 gene are associated to the inherited human disease progressive pseudorheumatoid dysplasia (PPD), that is characterised by cartilage loss and bone and joint destruction. Since MSCs also express the protein, the aim of this study was to elucidate if recombinant protein targets MSCs. A migratory effect of WISP3 treatment on MSCs and osteogenic differentiated MSCs has been proven in this study. To elucidate if global gene expression patterns are influenced by WISP3, cells were treated with 0.5 µg/ml WISP3 and compared to untreated control MSCs. Gene expression study by using affymetrix technology revealed an induction of interferon inducible genes including CXCL chemokines and members of the TNFSF family. Reevaluation by RT-PCR on identical RNA and an additional time series confirmed the results. Although no established cartilage associated genes were detected as regulated genes within this 24h treatment, anti-angiogenic and immunosuppressive genes indicate a protective role of WISP3 for the cartilage, which is sensitive to inflammatory processes. Both CCN-proteins CYR61 and WISP3 are valuable for the musculoskeletal system. This and previous studies revealed the role of CYR61 for osteogenesis and angiogenesis of tissue engineered applications. WISP3 is responsible for development, protection and maintenance of cartilage. Therefore further studies with the proteins in the musculoskeletal system are of high relevance.
With ageing, the loss of bone mass correlates with the expansion of adipose tissue in human bone marrow thus facilitating bone-related diseases like osteopenia and osteoporosis. The molecular mechanisms underlying these events are still largely unknown. Reduced osteogenesis and concurrently enhanced adipogenesis might not only occur due to the impairment of conventional osteogenic differentiation originating from mesenchymal stem cells (MSCs). Additionally, transdifferentiation of (pre-)osteoblasts into adipocytes could contribute to the fatty conversion. Therefore, the aim of the present study was to prove the existence of transdifferentiation between the adipogenic and osteogenic lineage and to elucidate molecular mechanisms underlying this phenomenon. At first, a cell culture system of primary human MSCs was established that allowed for differentiation into the adipogenic and osteogenic lineage and proved that the MSC-derived adipocytes and pre-osteoblasts were capable of transdifferentiation (reprogramming) from one into the other lineage. Thereby, lineage-specific markers were completely reversed after reprogramming of pre-osteoblasts into adipocytes. The osteogenic transdifferentiation of adipocytes was slightly less efficient since osteogenic markers were present but the adipogenic ones partly persisted. Hence, plasticity also reached into the differentiation pathways of both lineages and the better performance of adipogenic reprogramming further supported the assumption of its occurrence in vivo. The subsequent examination of gene expression changes by microarray analyses that compared transdifferentiated cells with conventionally differentiated ones revealed high numbers of reproducibly regulated genes shortly after initiation of adipogenic and osteogenic reprogramming. Thereof, many genes were correlated with metabolism, transcription, and signal transduction as FGF, IGF, and Wnt signalling, but only few of the established adipogenesis- and none of the osteogenesis-associated marker genes were detected within 24 h after initiation of transdifferentiation. To find possible key control factors of transdifferentiation amongst the huge amount of regulated genes, a novel bioinformatic scoring scheme was developed that ranked genes due to their potential relevance for reprogramming. Besides the reproducibility and level of their regulation, also the possible reciprocity between the adipogenic and osteogenic transdifferentiation pathway was taken into account. Fibroblast growth factor 1 (FGF1) that ranked as one of the leading candidates to govern reprogramming was proven to inhibit adipogenic differentiation as well as adipogenic transdifferentiation in our cell culture system. Further examination of the FGF signalling pathway and other highly ranked genes could help to better understand the age-related fatty degeneration at the molecular level and therefore provide target molecules for therapeutic modulation of the plasticity of both lineages in order to inhibit adipogenic degeneration and to enhance osteogenesis.
The effective binding of anions like carboxylates and phosphates in aqueous solutions is of particular interest for various reasons. The natural archetypes of effective anion receptors are enzymes that contain often arginine as relevant amino acid in the binding pocket. For this reason, one class of artificial anion receptors that emerged more than two decades ago mimics the anion binding with the guanidinium group present in the amino acid side chain. In 1999, Schmuck and coworkers developed a new class of guanidinium-based oxo anion receptor that binds carboxylates even in aqueous media. The binding modes of the 2-(guanidiniocarbonyl)-1H-pyrroles are based on individually weak non-covalent interaction between artificial host and substrate like ion pairing and multiple hydrogen bonds. The zwitterionic derivative with substitution of a carboxylate group in position 5 of the pyrrole ring system shows a strong self-assembly to discrete dimers (dimer 1) with an estimated association constant of 170 M-1 even in water. In order to further improve the structure motif for an effective oxo anion binding it is therefore of great interest to quantify the different intermolecular interactions between two monomeric units of 1. Against this background several theoretical ab initio studies were conducted in order to elucidate the influences of intrinsic properties as well as solvent effects on the stability of self-assembled dimers. In chapter 4.1 the molecular interactions in dimer 1 were investigated by comparison to various “knock-out” analogues. In these analogues single hydrogen bonds were switched off by substitution of hydrogen donor atoms with either methylene groups or ether bridges. The calculations were done for vacuum and solvation, as represented by a conductor-like polarizable continuum. It could be shown that the application of a simple continuum solvent model fails to predict the absolute energies of the knock-out analogues in strongly polar solvents. However, the calculated trends can explain the relative stabilities. In chapter 4.2 the structural similarity of arginine with structure 1 was used in order to examine the dependence of self-assembly from the flexibility of the molecular structure. In chapter 4.2.1 new global minimum structures of the canonical and zwitterionic arginine in gas phase were found by means of exhaustive force field based conformational searches in conjunction with ab initio structure optimizations of the lowest energy conformers. Most of the newly identified minimum conformers of both the zwitterionic and canonical tautomer revealed geometrical arrangements with hitherto unreported stacked orientations of the terminal groups. Finally a novel global minimum structure was detected that is more than 8 kJ mol-1 lower in energy than the previously published conformers. The same strategy for finding minimum energy conformers of the arginine monomer has also been employed for the arginine dimer structures. While previous theoretical studies favoured directed hydrogen bonds the new global minimum structure MMFF1 is about 60 kJ mol-1 more stable and exhibits a stacked orientation of the guanidinium and carboxylate groups. The importance of rigidity on the dimer stability was proven by calculations of an artificially stiffened arginine dimer system. The high binding affinity dimer 1 results by about 50% from the rigidity of the monomers which prevents any intramolecular stabilization. In chapter 4.3 novel structure motifs with varying ring systems have been examined on a DFT level of theory in order to make proposals for an improved carboxylate binding motif. The direct dependency of the dimerization energy on an increasing dipole moment was demonstrated by various anellated ring structures. The influence of the delocalization in the monomer on the dimerization energy was examined by variation of the electronic structure of electronically decoupled biphenylenes. With the aid of various substituted 7-guanidinioindole-2-carboxylate derivatives we could show that the carbonyl function is mainly responsible for the advantageous preorganisation, whereas the effect on the acidity seems to be only of minor importance. In the last chapter cooperativity effects in supramolecular assemblies have been investigated. This was achieved by NMR shift calculations of adenosine-carboxylic acid complexes as model systems and comparison to experimental low-temperature NMR studies. We could demonstrate that only by applying vibrational averaged NMR shifts the experimental proton shifts obtained at very low temperatures in the hydrogen bond exchange regime could be reproduced.
Bacteriosponges contain large amounts of morphologically and phylogenetically diverse microorganisms in their mesohyl. The association is permanent, stable and highly specific, however, little is known about the establishment and maintenance of this association. The first aim of this Ph.D. thesis was to examine cospeciation between eight Aplysina species from the Mediterranean and Caribbean and their cyanobacterial associates. Host phylogeny was constructed with 18S rDNA and ITS-2 sequences using an alignment based on the secondary structure of the molecular markers and five different algorithms each. The genus Aplysina appeared as monophyletic. Aplysina sponges could be distinguished into a Caribbean and a Mediterranean cluster and a possible Tethyan origin is suggested. Comparison of the host phylogeny to the 16S rDNA phylogeny of the cyanobacterial strains revealed the lack of a congruent pattern. Therefore it is proposed that Aplysina sponges have not cospeciated with their cyanobacterial phylotypes and probably also not with other sponge specific microbes. The second aim of this Ph.D. thesis was to examine vertical transmission of microorganisms through reproductive stages of sponges. A general transmission electron microscopy (TEM) suvey revealed a clear correlation in that bacteriosponges always contained many microorganisms in their reproductive stages whereas non-bacteriosponges were always devoid of microbes in their reproductive stages. The transmission of the microbial community via sponge reproductive stages is concluded. Based on the previous results Ircinia felix was chosen for a detailed documentation of vertical transmission. I. felix larvae contained large amounts of microorganisms extracellularly in the central region whereas the outer region was almost free of microbes as shown by TEM. In I. felix juveniles microorganisms were located between densely packed sponge cells. The microbial profiles of I. felix adult, larvae, and juveniles were compared using denaturing gradient gel electrophoresis (DGGE). Similar microbial community patterns were found in adult and the respective larvae indicating that a large subset of the adult microbial community was vertically transmitted. In contrast, microbial communities of larvae pools released by different adult individuals seemed to be more variable. Juvenile banding patterns were a mixture of sponge specific and seawater microbes due to DNA extraction artefacts but demonstrated that at least half of the adult microbial community is present in the next generation. Finally, a comprehensive phylogenetic analysis was conducted by sequencing excised DGGE bands from adult and offspring of the bacteriosponges Agelas wiedenmayeri, I. felix, and Smenospongia aurea and by taking additional 16S rDNA sequences of Ectyoplasia ferox and Xestospongia muta (unpublished data of the laboratory). The identification of 24 vertical transmission clusters in at least 8 eubacterial phyla demonstrates that a complex and uniform microbial community is transferred via sponge reproductive stages. Vertical transmission is specific in that the microorganisms of bacteriosponges, but not those from seawater, are passed on, but unselective in that there appears to be no differentiation between individual sponge-specific lineages. In conclusion, vertical transmission points to a mutualistic and long-term association of bacteriosponges and complex microbial consortia.
The internal transcribed spacer 2 (ITS2) of the ribosomal gene repeat is an increasingly important phylogenetic marker whose RNA secondary structure is widely conserved across eukaryotic organisms. The ITS2 database aims to be a comprehensive resource on ITS2 sequence and secondary structure, based on direct thermodynamic as well as homology modelled RNA folds. Results: (a) A rebuild of the original ITS2 database generation scripts applied to a current NCBI dataset reveal more than 60,000 ITS2 structures. This more than doubles the contents of the original database and triples it when including partial structures. (b) The end-user interface was rewritten, extended and now features user-defined homology modelling. (c) Other possible RNA structure discovery methods (namely suboptimal and shape folding) prove helpful but are not able to replace homology modelling. (d) A use case of the ITS2 database in conjunction with other tools developed at the department gave insight into molecular phylogenetic analysis with ITS2.
Adaptive Polarization Pulse Shaping and Modeling of Light-Matter Interactions with Neural Networks
(2007)
The technique of ultrafast polarization shaping is applied to a model quantum system, the potassium dimer. The polarization dependence of the multiphoton ionization dynamics in this molecule is first investigated in pump–probe experiments, and it is then more generally addressed and exploited in an adaptive quantum control experiment utilizing near–IR polarization–shaped laser pulses. The extension of these polarization shaping techniques to the UV spectral range is presented, and methods for the generation and characterization of polarization–shaped laser pulses in the UV are introduced. Systematic scans of double–pulse sequences are introduced for the investigation and interpretation of control mechanisms. This concept is first introduced and illustrated for an optical demonstration experiment, and it is then applied for the analysis of the intrapulse dumping mechanism that is observed in the excitation of a large dye molecule in solution with ultrashort laser pulses. Shaped laser pulses are employed as a means for obtaining copious amounts of data on light–matter interactions. Neural networks are introduced as a novel tool for generating computer–based models for these interactions from the accumulated data. The viability of this approach is first tested for second harmonic generation (SHG) and molecular fluorescence processes. Neural networks are then utilized for modeling the far more complex coherent strong–field dynamics of potassium atoms.
A torsion free abelian group of finite rank is called almost completely decomposable if it has a completely decomposable subgroup of finite index. A p-local, p-reduced almost completely decomposable group of type (1,2) is briefly called a (1,2)-group. Almost completely decomposable groups can be represented by matrices over the ring Z/hZ, where h is the exponent of the regulator quotient. This particular choice of representation allows for a better investigation of the decomposability of the group. Arnold and Dugas showed in several of their works that (1,2)-groups with regulator quotient of exponent at least p^7 allow infinitely many isomorphism types of indecomposable groups. It is not known if the exponent 7 is minimal. In this dissertation, this problem is addressed.
This volume brings together several authors from different areas of psychology and the neighbouring social sciences. Each one contributes their own perspective on the growing interest topic of subjective well-being. The aim of the volume is to present these divergent perspectives and to foster communication between the different areas. Split into three parts, this volume initially discusses the general perspectives of subjective well-being and addresses fundamental questions, secondly it discusses the dynamics of subjective well-being and more specific research issues to give a better understanding of the general phenomenon, and thirdly the book emphasizes the social context in which people experience and report their happiness and satisfaction. The book will be of great interest to social and clinical psychologists, students of psychology and sociology and health professionals.
This thesis is devoted to the study of computational complexity theory, a branch of theoretical computer science. Computational complexity theory investigates the inherent difficulty in designing efficient algorithms for computational problems. By doing so, it analyses the scalability of computational problems and algorithms and places practical limits on what computers can actually accomplish. Computational problems are categorised into complexity classes. Among the most important complexity classes are the class NP and the subclass of NP-complete problems, which comprises many important optimisation problems in the field of operations research. Moreover, with the P-NP-problem, the class NP represents the most important unsolved question in computer science. The first part of this thesis is devoted to the study of NP-complete-, and more generally, NP-hard problems. It aims at improving our understanding of this important complexity class by systematically studying how altering NP-hard sets affects their NP-hardness. This research is related to longstanding open questions concerning the complexity of unions of disjoint NP-complete sets, and the existence of sparse NP-hard sets. The second part of the thesis is also dedicated to complexity classes but takes a different perspective: In a sense, after investigating the interior of complexity classes in the first part, the focus shifts to the description of complexity classes and thereby to the exterior in the second part. It deals with the description of complexity classes through leaf languages, a uniform framework which allows us to characterise a great variety of important complexity classes. The known concepts are complemented by a new leaf-language model. To a certain extent, this new approach combines the advantages of the known models. The presented results give evidence that the connection between the theory of formal languages and computational complexity theory might be closer than formerly known.
Brassicaceae and a few related plant families are characterized by possession of the glucosinolate-myrosinase system. Glucosinolates are amino-acid derived allelochemicals which are hydrolysed upon tissue damage by myrosinase enzymes to produce various degradation products which can be toxic for generalist insects. The larvae of the crucifer-specialist Athalia rosae, the turnip sawfly, sequester glucosinolates into their haemolymph. The role of the glucosinolate-myrosinase system for the interaction of the turnip sawfly with Brassicaceae was examined in this study from two different perspectives: variation within individual plants and between plant species. The plant responses to the feeding by herbivores and the short-term effects this induction had on insect behaviour were investigated in white mustard. Furthermore, plants can use multiple defences. Hence correlations of glucosinolates and myrosinase activities with other defences and nutritional quality and their long-term effects on the development of the insects were investigated in seven different plant species.
The RS1 protein, a 67 kDa protein, encoded by an intronless single copy gene that was only detected in mammals, mediates transcriptional and post-transcriptional down-regulation of the sodium-D-glucose co-transporter SGLT1. The short-term post-transcriptional down-regulation of SGTL1 by RS1 has been shown to occur at the trans-Golgi network (TGN). In the present study, two tripeptides from the human RS1 protein (hRS1), GlnCysPro and GlnSerPro, that induce the post-transcriptional down-regulation of SGLT1 at the TGN, were identified. The application of the tripeptides led to 40-50% reduction of the amount of the SGLT1 protein in the plasma membrane, which correlated to the degree of decrease in SGLT1-mediated glucose transport. For the short-term down-regulation of SGLT1 by the tripeptides, the effective intracellular concentrations IC50 values of 2.0 nM (GlnCysPro, QCP) and 0.16 nM (GlnSerPro, QSP) were estimated. The observed down-regulation of SGLT1 by the tripeptides QCP and QSP, similar to hRS1 protein, was attenuated by different intracellular monosaccharides including nonmetabolized methyl-α-D-glucopyranoside and 2-deoxyglucose. On the contrary, the short-term inhibition of the hOCT2 by QCP could only be observed after rising of intracellular concentration of AMG. QCP and QSP are transported by H+-peptide cotransporter PEPT1 that is co-located with SGLT1 in the small intestinal enterocytes and thereafter effectively down-regulate hSGLT1-mediated transport of AMG. The data indicates that orally applied tripeptides QCP or QSP can be used to down-regulate D-glucose absorption in small intestine and used for treatment of obesity and diabetes mellitus.
In radiation accidents biological methods are used in dosimetry, if the radiation dose could not be measured by physical methods. The knowledge of individual dose is a prerequisite for planning a medical treatment and for health risk evaluations. In the present work two biodosimetrical assays were calibrated in young patients who were treated with radioiodine for thyroid cancer. Patients were from Belarus. They suffered from radiation induced thyroid cancer as a consequence of the Chernobyl reactor accident. In radioiodine therapy (RIT) bone marrow and lymphatic organs are exposed to ionizing radiation at doses of 0.1 to 0.75 Sv within about 2 days. Since several RIT have to be applied with interval between each of them from 6 months up to approximately 1 year, total dose can be up to 2 Sv within 2 to 3 years. The dose for thyroid tissue is approximately 1000 times higher. The dose-response relationship was measured by the T-cell receptor test (TCR test) in T4 lymphocytes with and without in vitro incubation or by the micronucleus assay in transferrin receptor positive reticulocytes (MN-Tf-Ret test). In all these assays, the frequency of radiation-induced mutants of blood cells is measured using flow cytometry. The TCR test is a cumulative biodosimeter, which measures the total radiation dose within the last 5 to 10 years, whereas the result of the MN-Tf-Ret test reflects the radiation dose of approximately 24 hours interval. It takes 8 hours and 3 days to perform TCR and MN-Tf-Ret tests respectively. Calibration curves based on radioiodine treated patients can be used for dose estimation in humans, if the radiation conditions correspond to those in RIT. This limits their applicability to low dose-rate β- and γ-irradiation and to doses per session not higher than about 0.5 Sv. If higher doses or dose-rates as well as the other types of ionizing radiation are involved, calibration curves in animals are indispensable. In the case MN-Tf-Ret test mouse models are established and may be used. The TCR assay was performed in 72 thyroid cancer patients aged between 14 and 25. T-cell mutant frequency (Mf) reaches its maximum only after half a year following the RIT. Then it declines exponentially. This decline could be described by the 3 parameter single exponential decay function. Based on this equation, the radiation dose could be calculated when the Mf and the time interval since exposure are known. Furthermore, the experimentally measured Mf value, which significantly exceeds the corresponding calculated Mf value would indicate an individual with higher radiosensitivity. However, among our patients there were none. The reticulocytes micronuclei test (MN-Tf-Ret) was performed in 46 radioiodine treated patients. When measuring the MN frequency (f(MN-Tf-Ret)) the measured cell fraction should be limited only to the youngest cohort of reticulocytes, because all the micronucleated erythrocytes are quickly removed from the peripheral blood by spleen. Thus, the MN test was performed only in CD71 positive (having transferring receptor) reticulocytes. These reticulocytes just entered the peripheral blood flow from red marrow. The MN frequency was measured before the therapy and then every day after the irradiation until day 7. MN frequency curve has typical shape with latent period for days 0 to 3. Then there is a sharp increase in MN frequency which lasts for 24 hours and could start between days 3 and 4. In the following days the MN frequency is dropping to its base level that equals the one before the treatment. The decay of MN frequency is depending on the half-life of radioiodine in the patient organism. If the half-life is low, then the increased f(MN-Tf-Ret) lasts shorter and vice versa. It was shown that the MN frequency curve could be described by the model where all the micronuclei arise only through the last mitosis of erythroblasts in the red marrow and the MN frequency is proportional to the radiation dose in the last cell cycle. The shape of this curve depends on the cell kinetics of erythropoiesis on one side and the exponential decay of radioiodine activity on the other. To the best of our knowledge, the MN-Tf-Ret test was applied in the present study for the first time in biological dosimetry.
Introduction: This study investigates the role of Wolbachia bacteria in the pathogenesis of O. volvulus keratitis in a mouse model. Wolbachia bacteria are essential symbionts of most filarial nematodes of importance for mankind. Methods: Using a mouse model for river blindness in which soluble extracts of filarial nematodes are injected in the corneal stroma, changes in stromal thickness and haze of the cornea are observed by in vivo confocal microscopy, followed by immunohistochemical staining for neutrophils and PECAM-1, as well as ELISA of corneal chemokines. Reactions to filarial extracts containing Wolbachia are compared to those without the endosymbiont. Results: The approach of characterizing Wolbachia’s role in river blindness in this study is threefold. Firstly, Wolbachia-depleted extracts from doxycycline treated onchocerciasis patients led to a diminished inflammatory response in corneas of C57BL/6 mice compared to untreated, i.e. Wolbachia containing antigen. The decreased cell recruitment observed with doxycycline treated extracts involved neutrophils, but not eosinophils. This finding demonstrated that the presence of Wolbachia increases neutrophil recruitment. Secondly, extracts from Wolbachia-containing B. malayi revealed markedly more pathology than endosymbiont-free A. viteae antigen. This again pointed at the role of Wolbachia in development of disease. Thirdly, Toll-like Receptor 4 (TLR4) dependence was shown to exist for the inflammatory response to Wolbachia harboring O. volvulus antigen by looking at the corneal pathology in TLR4-mutant C3H/HeJ mice, compared to the wild-type C3H/HeN strain. Investigating further Wolbachia mediated mechanisms of neutrophil recruitment to the cornea, this study also showed that expression of the adhesion molecule PECAM-1 in limbal vessels, as well as upregulation of the CXC chemokines KC and MIP-2 were dependent on the presence of functional TLR4 and Wolbachia respectively. Conclusions: This study indicates that the innate immune system and Wolbachia endobacteria play an important role in the inflammatory response associated with the pathogenesis of onchocerca keratitis, suggesting a complete alteration in our understanding of the immunopathology of filariasis.
- 77/83 allerdings inaktiv in Kulturen und Embryonen von Medaka. Dieser Unterschied wird durch Daten aus humanen ES-Zellkulturen unterstützt. Letztere sind ebenfalls komplett STAT3 unabhängig. Die BMP-Smad Kaskade wiederum ist in Medaka-Stammzellen aktiv, Antidifferenzierungsgene wie id2, die durch BMP direkt kontrolliert werden, sind dementsprechend exprimiert. Diese Daten stimmen wiederum mit dem Maussystem überein, während humane ES-Zellen diesbezüglich bislang nicht untersucht wurden. Die Interaktion zwischen verschiedenen Signalwegen ist ein bisher noch nicht gut verstandenes Gebiet. Die Integration verschiedener Signale ist aber speziell für Stammzellen, die ihr Differenzierungsschicksal von winzigen Abweichungen in der Signalmixtur abhängig machen, von entscheidender Bedeutung. Im zweiten Teil der hier vorgelegten Arbeit konnte eine Interaktion zwischen dem BMP-Rezeptor 1a und STAT3 nachgewiesen werden. Diese Interaktion ist offenbar Teil eines variablen Komplexes. Zum ersten Mal war es auch möglich, funktionale Konsequenzen für STAT3 nach Stimulierung des BMP-Rezeptors 1a zu dokumentieren. Nach Belegung des BMP-Rezeptors 1a mit dem mutierten BMP2-A34D wird STAT3 trotz Aktivierung durch Phosphorylierung an Tyrosin 705 im Zytoplasma von Maus Stammzellen festgehalten. Zusammengenommen konnte hier gezeigt werden, dass eine Interaktion zwischen den bislang als isoliert betrachteten Signalwegen BMP-Smad und STAT3 besteht. Des Weiteren wurde das Medaka-Stammzellkultursystem benutzt, um zu zeigen, dass STAT3 für die Pluripotenz von Stammzellen nur im Maussystem eine Rolle spielt, wohingegen BMPZielgene wie id2 in bislang allen getesteten ES-Zellkultursystemen aktiv sind.
The live sciences currently undergo a paradigm shift to computer aided discoveries. Discoveries in the live sciences were historically made by either direct observation or as a result of chemical assays. Today we see a growing shift toward computer aided analysis and visualization. This gradual process happens in microscopy. Multidimensional laser scanning microscopy can acquire very complex multichannel data from fixed or live specimen. New probes such as visible fluorescent proteins let us observe the expression of genes and track protein localization. Ion sensitive dyes change intensity with the concentration of ions in the cell. The laser scanning confocal allows us to record these processes in three dimensions over time. This work demonstrates the application of software analysis to multidimensional microscopy data. We introduce methods for volume investigation, ion flux analysis and molecular modeling. The visualization methods are based on a multidimensional data model to accommodate complex datasets. The software uses vector processing and multiple processors to accelerate volume rendering and achieve interactive rendering. The algorithms are based on human visual perception and allow the observer a wide range of mixed render modes. The software was used to reconstruct the pituitary development in zebrafish and observe the degeneration of neurons after injury in a mouse model. Calicum indicator dyes have long been used to study calcium fluxes. We optimized the imaging method to minimize impact on the cell. Live cells were imaged continuously for 45 minutes and subjected to increasing does of a drug. We correlated the amplitude of calcium oscillations to increasing doses of a drug and obtain single cell dose response curves. Because this method is very sensitive and measures single cell responses it has potential in drug discovery and characterization. Microtubules form a dynamic cytoskeleton, which is responsible for cell shape, intracellular transport and has an integral role in mitosis. A hallmark of microtubule organization is lateral interactions. Microtubules are bundles by proteins into dense structures. To estimate the contribution of this bundling process, we created a fractal model of microtubule organization. This model demonstrates that morphology of complex microtubule arrays can be explained by bundling alone. In summary we showed that advances in software for visualization, data analysis and modeling lead to new discoveries.
Integrins are transmembrane receptors transmitting mechanical signals from the extracellular matrix (ECM) to the cytoskeleton (outside-in-signaling). Many molecular defects in the link between cytoskeleton and ECM are known to induce cardiomyopathies. alpha v integrin appears to play a major role in several processes relevant to remodeling, such as binding and activation of matrix metalloproteinases as well as regulation of cell proliferation, migration, and differentiation. We hypothesized that alpha v integrin-mediated signaling is required for the compensatory hypertrophy after aortic banding (AB) and associated with the modulation of ECM protein expression. Mice were treated in vivo with a specific integrin alpha v inhibitor or vehicle via osmotic minipumps starting 1 day prior to aortic banding (AB). At day 2 and day 7 following AB or sham-operation, the mice were examined by echocardiography and hemodynamic analyses were performed. Treatment of alpha v Integrin inhibitor led to a dilated cardiomyopathy and congestive heart failure in AB mice (dilated left ventricle, depressed LV function, and pulmonary congestion), but not to hypertrophy as observed in mice without inhibitor treatment. Investigation of downstream signaling revealed significant activation of the p38 Mitogen-Activated Protein Kinase (MAPK), the Extracellular signal-Regulated Kinases 1 and 2 (Erk 1/2), Focal Adhesion Kinase (FAK) and tyrosine-phosphorylation of c-Src in mice 7 days after AB. This response was blunted in mice treated with integrin alpha v inhibitor. Microarrays probing for a total of 96 cell adhesion and ECM genes identified various genomic targets of integrin alpha v mediated signalling. 7 days after AB 18 ECM genes were up-regulated more than 2-fold (n=6), e.g. collagen (8.11 ± 2.2), fibronectin (2.32 ± 0.94), secreted protein, acidic and rich in cysteine (SPARC, 3.78 ± 0.12), A disintegrin-like and metalloprotease (reprolysin type) with trombospondin type 1 (Adamts-1, 3.51 ± 0.81) and Tissue inhibitor of metalloproteinase 2 (TIMP2, 2.23 ± 0.98), whereas this up-regulation was abolished in mice that were treatd by integrin alpha v inhibitor via mini pumps. We conclude that signaling downstream of integrin alpha v is mediated by the MAPK, FAK and c-Src pathways leading to an up-regulation of extracelluar matrix components necessary for the compensatory response of the heart under a condition of pressure overload.
In this thesis we have investigated the effect of NFAT (Nuclear Factor of Activated T Cell) transcription factors on the expression of Rag-(Recombination Activating Genes) genes in murine thymus. The protein products of Rag genes, RAG1 and RAG2, are critical for the recombination and generation of the TCR (T Cell Receptor) repertoire during thymocyte development, and their expression can be suppressed by the activity of NFAT factors. In thymus, the expression of Rag1 and Rag2 genes is induced at the double-negative (DN, CD4-8-) 3 stage, down-regulated at the DN4 stage, re-induced at the double-positive (DP, CD4+8+) stage, and suppressed again at the single-positive (SP, CD4+8- or CD4-8+) stage. Although it is known that TCR signaling suppresses the expression of Rag1 and Rag2 at the SP stage, the signals that mediate the Rag gene down-reulation remain elusive. Here we report that both the calcineurin-NFAT-signaling and MAPKinase signaling pathways, which are activated by TCR signaling during positive selection, mediate the Rag gene down-regulation in DP thymocytes. The calcineurin-NFAT pathway suppresses both the Rag1 and the Rag2 gene expression. This pathway has a stronger suppressive effect on the Rag1 than the Rag2 gene. A synergistic activity between the two NFAT factors NFATc2 and NFATc3 is essential for calcineurin-NFAT signaling to efficiently suppress the Rag gene expression in DP thymocytes. It is likely that the calcineurin-NFAT signaling down-regulates Rag gene expression by suppressing both the Rag anti-silencer element (ASE) activity and the Rag promoter activity. Similarly, MEK-ERK signaling of MAPK signaling pathway mediates the Rag gene suppression in DP thymocytes although the mechanism through which MEK-ERK mediates the Rag gene down-regulation has to be elucidated. In DN thymocytes, it appears that neither the calcineurin-NFAT signaling nor MAPK signaling is involved in the Rag gene down-regulation. However, a role for these two signaling pathways in the Rag gene up-regulation in DN thymocytes is not excluded. In DN thymocytes, pre-TCR signaling stimulates the expression both Nfatc1 and Nfatc2 genes but has no effect on Nfatc3 gene expression. In DN thymocytes, pre-TCR signaling activates Nfatc1α expression but not Nfatc1ß expression, i.e. the two promoters controling Nfatc1 gene xpression are differently controled by pre-TCR signals. Nfatc1α gene expression in DN thymocytes is mainly regulated by the MAPK signaling pathway because activation of Nfatc1α is mediated by MEK-ERK signaling but opposed by JNK signaling. Calcineuirn-NFAT and p38 signaling pathways are not involved in Nfatc1α promoter regulation in DN thymocytes. In DP thymocytes, TCR signaling up-regulates Nfatc1 and Nfatc2 expression but down-regulates Nfatc3 expression. In DP thymocytes, TCR signaling activates Nfatc1α expression. The activation of Nfatc1α in DP thymocytes is mediated by NFATc1, but not or to a less degree by NFATc2 and NFATc3. MEK-ERK, JNK, and p38 signaling pathways are involved in Nfatc1α gene activation in DP thymocytes, probably by activating NFAT trans-activation activity. All these findings illustrate that in thymocytes the expression of NFAT transcription factors – which are essential for thymic development - is controled at multiple levels.
The basic question which drove our whole work was to find a meaningful noncommutative gauge theory even for the time-like case ($\theta^{0 i} \neq 0$). In order to be able to tackle questions regarding unitarity, it is not sufficient to consider theories which include the noncommutative parameter only up to a finite order. The reason is that in order to investigate tree-level unitarity or the optical theorem in loops one has to know the behavior of the noncommutative theory for center-of-mass energies much greater than the noncommutative scale. Therefore an effective theory, that is by construction only valid up to the noncommutative scale, isn't sufficient for our purpose. Our model is based on two fundamental assumptions. The first assumption is given by the commutation relations \eqref{eq:ncalg}. This led to the Moyal-Weyl star-product \eqref{eq:astproduct2} which replaces all point-like products between two fields. The second assumption is to assume that the model built this way is not only invariant under the noncommutative gauge transformation but also under the commutative one. In order to obtain an action of such a model one has to replace the fields by their appropriate \swms. We chose the gauge fixed action \eqref{eq:actioncgf} as the fundamental action of our model. After having constructed the action of the NCQED including the {\swms} we were confronted with the problem of calculating the {\swms} to all orders in $\tMN$. By means of \cite{bbg} we could calculate the {\swms} order by order in the gauge field, where each order in the gauge field contains all orders in the noncommutative parameter (\cf chapter \ref{chapter:swms}). By comparing the maps with the result we obtained from an alternative ansatz \cite{bcpvz}, we realized that already the simplest {\swm} for the gauge field is not unique. In chapter \ref{chapter:ambiguities} we examined this ambiguity, which we could parametrised by an arbitrary function $\astf$. The next step was to derive the Feynman rules for our NCQED. One finds that the propagators remain unchanged so that the free theory is equal to the commutative QED. The fermion-fermion-photon vertex contains not only a phase factor coming from the Moyal-Weyl star-product but also two additional terms which have their origin in the \swms. Beside the 3-photon vertex which is already present in NCQED without {\swms} and which has also additional terms coming from the \swms, too, one has a contact vertex which couples two fermions with two photons. After having derived all the vertices we calculated the pair annihilation scattering process $e^+ e^- \rightarrow \gamma \gamma$ at Born level. By choosing the parameter $\kggg = 1$ (\cf section \ref{sec:represent}), we found that the amplitude of the pair annihilation process becomes equal to the amplitude of the NCQED without \swms. This means that, at least for this process, the NCQED excluding {\swms} is only a special case of NCQED including \swms. On the basis of the pair annihilation process, we afterwards investigated tree-level unitarity. In order to satisfy the tree-level unitarity we had to constrain the arbitrary function $\astf$. We found that the series expansion of $\astf$ has to start with unity. In addition, the even part of the function must not increase faster than $s^{-1/2} \log(s)$ for $s \rightarrow \infty$, whereas the odd part of the $\astf$-function can't be constrained, at least by the process we considered. By assuming these constrains for the $\astf$-function, we could show that tree-level unitarity is satisfied if one incorporates the uncertainties present in the energy and the momenta of the scattered particles, \ie the uncertainties of the center-of-mass energy and the scattering angles. This uncertainties are not exclusively present due to the finite experimental resolution. A delta-like center-of-mass energy as well as delta-like momenta are in general not possible because the scattered particles are never exact plane waves.