Refine
Year of publication
- 2019 (1006) (remove)
Document Type
- Journal article (449)
- Doctoral Thesis (415)
- Complete part of issue (51)
- Book article / Book chapter (33)
- Preprint (19)
- Book (13)
- Working Paper (8)
- Master Thesis (4)
- Report (3)
- Study Thesis (term paper) (3)
Language
- English (639)
- German (363)
- Multiple languages (2)
- Russian (1)
- Spanish (1)
Keywords
- Universität (47)
- Wuerzburg (47)
- Würzburg (47)
- University (46)
- Wurzburg (46)
- Animal Studies (24)
- Cultural Animal Studies (24)
- Cultural Studies (24)
- Ecocriticism (24)
- Environmental Humanities (24)
Institute
- Theodor-Boveri-Institut für Biowissenschaften (96)
- Graduate School of Life Sciences (69)
- Physikalisches Institut (46)
- Universität - Fakultätsübergreifend (46)
- Institut für deutsche Philologie (39)
- Institut für Anorganische Chemie (38)
- Institut für Organische Chemie (35)
- Medizinische Klinik und Poliklinik II (35)
- Medizinische Klinik und Poliklinik I (34)
- Neuphilologisches Institut - Moderne Fremdsprachen (33)
- Institut für Psychologie (30)
- Neurologische Klinik und Poliklinik (30)
- Kinderklinik und Poliklinik (29)
- Institut für Geographie und Geologie (27)
- Institut für Pharmazie und Lebensmittelchemie (25)
- Klinik und Poliklinik für Psychiatrie, Psychosomatik und Psychotherapie (25)
- Klinik und Poliklinik für Allgemein-, Viszeral-, Gefäß- und Kinderchirurgie (Chirurgische Klinik I) (22)
- Abteilung für Funktionswerkstoffe der Medizin und der Zahnheilkunde (21)
- Lehrstuhl für Tissue Engineering und Regenerative Medizin (21)
- Institut für Hygiene und Mikrobiologie (19)
- Rudolf-Virchow-Zentrum (19)
- Institut für Informatik (18)
- Julius-von-Sachs-Institut für Biowissenschaften (18)
- Institut für Physikalische und Theoretische Chemie (17)
- Institut für Virologie und Immunbiologie (17)
- Institut für Theoretische Physik und Astrophysik (16)
- Lehrstuhl für Orthopädie (16)
- Pathologisches Institut (16)
- Deutsches Zentrum für Herzinsuffizienz (DZHI) (15)
- Klinik und Poliklinik für Nuklearmedizin (14)
- Klinik und Poliklinik für Strahlentherapie (14)
- Betriebswirtschaftliches Institut (13)
- Institut für Klinische Epidemiologie und Biometrie (13)
- Klinik und Poliklinik für Unfall-, Hand-, Plastische und Wiederherstellungschirurgie (Chirurgische Klinik II) (13)
- Institut für Anatomie und Zellbiologie (11)
- Institut für Funktionsmaterialien und Biofabrikation (11)
- Institut für Humangenetik (11)
- Klinik und Poliklinik für Hals-, Nasen- und Ohrenkrankheiten, plastische und ästhetische Operationen (11)
- Institut für Pharmakologie und Toxikologie (10)
- Institut für diagnostische und interventionelle Radiologie (Institut für Röntgendiagnostik) (10)
- Klinik und Poliklinik für Anästhesiologie (ab 2004) (10)
- Klinik und Poliklinik für Dermatologie, Venerologie und Allergologie (10)
- Medizinische Fakultät (10)
- Neurochirurgische Klinik und Poliklinik (10)
- Institut für Klinische Neurobiologie (9)
- Institut für Mathematik (8)
- Institut für Molekulare Infektionsbiologie (8)
- Institut für Politikwissenschaft und Soziologie (8)
- Klinik und Poliklinik für Kinder- und Jugendpsychiatrie, Psychosomatik und Psychotherapie (8)
- Abteilung für Molekulare Innere Medizin (in der Medizinischen Klinik und Poliklinik II) (7)
- Graduate School of Science and Technology (7)
- Institut Mensch - Computer - Medien (7)
- Institut für Experimentelle Biomedizin (7)
- Institut für Geschichte der Medizin (7)
- Klinik und Poliklinik für Mund-, Kiefer- und Plastische Gesichtschirurgie (7)
- Klinik und Poliklinik für Thorax-, Herz- u. Thorakale Gefäßchirurgie (7)
- Institut für diagnostische und interventionelle Neuroradiologie (ehem. Abteilung für Neuroradiologie) (6)
- Fakultät für Biologie (5)
- Institut für Altertumswissenschaften (5)
- Institut für Sportwissenschaft (5)
- Lehrstuhl für Biochemie (5)
- Universität Würzburg (5)
- Augenklinik und Poliklinik (4)
- Fakultät für Humanwissenschaften (Philos., Psycho., Erziehungs- u. Gesell.-Wissensch.) (4)
- Institut für Geschichte (4)
- Philosophische Fakultät (Histor., philolog., Kultur- und geograph. Wissensch.) (4)
- Sportzentrum (4)
- Urologische Klinik und Poliklinik (4)
- Volkswirtschaftliches Institut (4)
- Comprehensive Cancer Center Mainfranken (3)
- Institut für Biblische Theologie (3)
- Institut für Internationales Recht, Europarecht und Europäisches Privatrecht (3)
- Institut für Kulturwissenschaften Ost- und Südasiens (3)
- Institut für Musikforschung (3)
- Institut für Psychotherapie und Medizinische Psychologie (3)
- Physiologisches Institut (3)
- Center for Computational and Theoretical Biology (2)
- Frauenklinik und Poliklinik (2)
- Institut für Klinische Transfusionsmedizin und Hämotherapie (2)
- Institut für Medizinische Strahlenkunde und Zellforschung (2)
- Institut für Pädagogik (2)
- Institut für Sonderpädagogik (2)
- Klinik und Polikliniken für Zahn-, Mund- und Kieferkrankheiten (2)
- Missionsärztliche Klinik (2)
- Poliklinik für Zahnerhaltung und Parodontologie (2)
- Abteilung für Forensische Psychiatrie (1)
- Abteilung für Parodontologie (in der Poliklinik für Zahnerhaltung und Parodontologie) (1)
- Institut für Allgemeinmedizin (1)
- Institut für Archäologie (1)
- Institut für Bürgerliches Recht und Zivilprozessrecht (1)
- Institut für Kunstgeschichte (1)
- Institut für Philosophie (1)
- Institut für Praktische Theologie (1)
- Institut für Slavistik (1)
- Institut für Strafrecht und Kriminologie (1)
- Institut für Systemimmunologie (1)
- Lehrstuhl für Molekulare Psychiatrie (1)
- Martin-von-Wagner-Museum (1)
- Poliklinik für Kieferorthopädie (1)
- Rechenzentrum (1)
- Universitätsbibliothek (1)
Schriftenreihe
Sonstige beteiligte Institutionen
- VolkswagenStiftung (24)
- DFG Forschungsgruppe 2757 / Lokale Selbstregelungen im Kontext schwacher Staatlichkeit in Antike und Moderne (LoSAM) (2)
- Deutsches Archäologisches Institut (2)
- Johns Hopkins School of Medicine (2)
- Universität Bayreuth (2)
- Universität Leipzig (2)
- Akademie der Wissenschaften und der Literatur, Mainz (1)
- Bio-Imaging Center Würzburg (1)
- CAPES - Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - the development agency of the Brazilian Federal Government (1)
- Center for Nanosystems Chemistry (CNC), Universität Würzburg (1)
ResearcherID
- B-4606-2017 (1)
2D electrophysiology is often used to determine the electrical properties of neurons, while in the brain, neurons form extensive 3D networks. Thus, performing electrophysiology in a 3D environment provides a closer situation to the physiological condition and serves as a useful tool for various applications in the field of neuroscience. In this study, we established 3D electrophysiology within a fiber-reinforced matrix to enable fast readouts from transfected cells, which are often used as model systems for 2D electrophysiology. Using melt electrowriting (MEW) of scaffolds to reinforce Matrigel, we performed 3D electrophysiology on a glycine receptor-transfected Ltk-11 mouse fibroblast cell line. The glycine receptor is an inhibitory ion channel associated when mutated with impaired neuromotor behaviour. The average thickness of the MEW scaffold was 141.4 ± 5.7µm, using 9.7 ± 0.2µm diameter fibers, and square pore spacings of 100 µm, 200 µm and 400 µm. We demonstrate, for the first time, the electrophysiological characterization of glycine receptor-transfected cells with respect to agonist efficacy and potency in a 3D matrix. With the MEW scaffold reinforcement not interfering with the electrophysiology measurement, this approach can now be further adapted and developed for different kinds of neuronal cultures to study and understand pathological mechanisms under disease conditions.
We have recently demonstrated CXCR4 overexpression in vestibular schwannomas (VS). This study investigated the feasibility of CXCR4-directed positron emission tomography/computed tomography (PET/CT) imaging of VS using the radiolabeled chemokine ligand [\(^{68}\)Ga]Pentixafor.
Methods: 4 patients with 6 primarily diagnosed or pre-treated/observed VS were enrolled. All subjects underwent [\(^{68}\)Ga]Pentixafor PET/CT prior to surgical resection. Images were analyzed visually and semi-quantitatively for CXCR4 expression including calculation of tumor-to-background ratios (TBR). Immunohistochemistry served as standard of reference in three patients.
Results: [\(^{68}\)Ga]Pentixafor PET/CT was visually positive in all cases. SUV\(_{mean}\) and SUV\(_{max}\) were 3.0 ± 0.3 and 3.8 ± 0.4 and TBR\(_{mean}\) and TBR\(_{max}\) were 4.0 ± 1.4 and 5.0 ± 1.7, respectively. Histological analysis confirmed CXCR4 expression in tumors.
Conclusion: Non-invasive imaging of CXCR4 expression using [\(^{68}\)Ga]Pentixafor PET/CT of VS is feasible and could prove useful for in vivo assessment of CXCR4 expression.
Das Multiple Myelom ist eine hämatologische Erkrankung, die durch die Proliferation von Plasmazellen und die Produktion von Antikörpern oder deren Leichtketten gekennzeichnet ist. Eine frühe Diagnosestellung durch Detektion sowohl intra- als auch extramedullärer Manifestationen ist für die Einleitung einer effektiven Therapie von entscheidender Bedeutung. Ebenso bedeutsam ist ein wirksames Therapiemonitoring. Wichtige diagnostische Modalitäten sind bei beiden Fragestellungen tomografische, bildgebende Verfahren. Hierbei wurde die Effektivität der 18F-FDG-PET/CT im Rahmen der Diagnose, des Stagings und der Prognoseabschätzung bereits nachgewiesen. Dennoch ist ihr klinischer Nutzen durch die geringe Sensitivität bei Detektion von diffusem Knochenmarksbefall und Vorliegen sowohl falsch positiver als auch falsch negativer Befunde limitiert.
Die vorliegende Arbeit hat untersucht, ob der aminosäurebasierte Tracer 11C-MET über spezifische Eigenschaften verfügt, die eine höhere Sensitivität und Spezifität in der Detektion von Myelomzellen ermöglichen und ob der Radioligand dem etablierten Glukoseanalogon 18F-FDG überlegen ist. Hierfür wurden drei etablierte humane Myelomzelllinien, sowohl nativ als auch nach 48-stündiger Therapie mit dem Proteasominhibitor Carfilzomib, mit 18F-FDG und 11C-MET inkubiert und mithilfe eines Gammastrahlungszählers beurteilt. Zudem wurde untersucht, ob die Traceraufnahme mit spezifischen Charakteristika der Tumorbiologie korreliert. So wurde die Oberflächenexpression von CD138 und CXCR4, die intrazelluläre Expression der Leichtketten κ/λ und die Proliferation der Zelllinien mittels Durchflusszytometrie vor und nach Behandlung mit Carfilzomib eruiert.
Die unbehandelten Zellen zeigten, verglichen zu 18F-FDG, bereits nach kürzester Inkubationsdauer eine 3-3,5-fach höhere 11C-MET Retention. Weiterhin zeigte sich die 11C-MET-Aufnahme nach Behandlung aller Zellreihen insgesamt marginal höher als die 18F-FDG-Aufnahme, während die Reduktion der 11C-MET-Anreicherung im prä- zu posttherapeutischen Vergleich für alle drei Zelllinien signifikant war.
Eine mögliche Erklärung für diese Beobachtungen liefert die Myelombiologie: eine erhöhte Aufnahme der radioaktiv markierten Aminosäure durch MM-Zellen könnte durch eine Zunahme der Zellproliferation und insbesondere durch eine Steigerung der Proteinsynthese im Rahmen der überschießenden Produktion von M-Protein bedingt sein. In Zusammenschau könnte 11C-MET mit höherer Sensitivität Myelommanifestationen detektieren, wodurch ggf. Läsionen mit geringem Metabolismus dargestellt und eine bessere Beurteilung des Krankheitspogresses erfolgen könnte. Zudem bietet für den klinischen Einsatz die – verglichen zu 18F-FDG – größere Differenz der 11C-MET-Retention zwischen prä- und posttherapeutischer Messung die Möglichkeit einer besseren Beurteilbarkeit des Therapieansprechens. 11C-MET birgt ggf. das Potential auch minimale aktive Restherde zu detektieren und damit Patienten einem individualisierten Therapiekonzept zuzuführen.
Ein Zusammenhang zwischen den untersuchten Biomarkern und der 11C-MET Retention bzw. deren Abnahme nach Behandlung konnte nicht gezeigt werden. Somit sollten für 11C-MET andere Biomarker herangezogen werden, um diese mit der Bildgebung zu korrelieren und zu bewerten.
Neben der Chemotherapie ist heutzutage auch die Hyperthermie-Behandlung eine wichtige Säule der antitumorösen Therapie. Während der sogenannten HIPEC Therapie (Hypertherme intraperitoneale Chemoperfusion) werden die beiden Arten der Therapieformen kombiniert und in der klinischen Praxis erfolgreich angewendet. Genauere Kenntnisse über die zu Grunde liegenden toxikologischen in-vitro Mechanismen könnten zu neuen Möglichkeiten in der klinischen Anwendung führen. In unserer Arbeit untersuchten wir verschiedenen Tumorzelllinien (HT29,CaCo-2,HCT116,HaCaT) in Kombination mit Cisplatin und Hyperthermie mit verschiedenen Methoden, wie zum Beispiel Mikrokerntest, Comet-Assay, Durchflusszytometrie, Vitalitätstest und mikroskopischen Analysen. Unsere Ergebnisse führten uns zu der Hypothese, dass Hyperthermie alleine zu einer sogenannte mitotic catastrophe führt und zum Absterben der Tumorzellen. Im Gegensatz dazu zeigten Tumorzellen, welche mit Cisplatin alleine oder auch in Kombination mit Hyperthermie nicht in die Mitose eintreten und daher nicht durch Apoptose in den Zelltod gehen.
Honeybees (Apis mellifera) are threatened by numerous pathogens and parasites. To prevent infections they apply cooperative behavioral defenses, such as allo-grooming and hygiene, or they use antimicrobial plant resin. Resin is a chemically complex and highly variable mixture of many bioactive compounds. Bees collect the sticky material from different plant species and use it for nest construction and protection. Despite its importance for colony health, comparatively little is known about the precise origins and variability in resin spectra collected by honeybees. To identify the botanical resin sources of A. mellifera in Western Europe we chemically compared resin loads of individual foragers and tree resins. We further examined the resin intake of 25 colonies from five different apiaries to assess the effect of location on variation in the spectra of collected resin. Across all colonies and apiaries, seven distinct resin types were categorized according to their color and chemical composition. Matches between bee-collected resin and tree resin indicated that bees used poplar (Populus balsamifera, P. x canadensis), birch (Betula alba), horse chestnut (Aesculus hippocastanum) and coniferous trees (either Picea abies or Pinus sylvestris) as resin sources. Our data reveal that honeybees collect a comparatively broad and variable spectrum of resin sources, thus assuring protection against a variety of antagonists sensitive to different resins and/or compounds. We further unravel distinct preferences for specific resins and resin chemotypes, indicating that honeybees selectively search for bioactive resin compounds.
Background
The oral mucosa has an important role in maintaining barrier integrity at the gateway to the gastrointestinal and respiratory tracts. Smoking is a strong environmental risk factor for the common oral inflammatory disease periodontitis and oral cancer. Cigarette smoke affects gene methylation and expression in various tissues. This is the first epigenome-wide association study (EWAS) that aimed to identify biologically active methylation marks of the oral masticatory mucosa that are associated with smoking.
Results
Ex vivo biopsies of 18 current smokers and 21 never smokers were analysed with the Infinium Methylation EPICBeadChip and combined with whole transcriptome RNA sequencing (RNA-Seq; 16 mio reads per sample) of the same samples. We analysed the associations of CpG methylation values with cigarette smoking and smoke pack year (SPY) levels in an analysis of covariance (ANCOVA). Nine CpGs were significantly associated with smoking status, with three CpGs mapping to the genetic region of CYP1B1 (cytochrome P450 family 1 subfamily B member 1;best p=5.5x10(-8)) and two mapping to AHRR (aryl-hydrocarbon receptor repressor; best p=5.9x10(-9)). In the SPY analysis, 61 CpG sites at 52 loci showed significant associations of the quantity of smoking with changes in methylation values. Here, the most significant association located to the gene CYP1B1, with p=4.0x10(-10). RNA-Seq data showed significantly increased expression of CYP1B1 in smokers compared to non-smokers (p=2.2x10(-14)), together with 13 significantly upregulated transcripts. Six transcripts were significantly downregulated. No differential expression was observed for AHRR. In vitro studies with gingival fibroblasts showed that cigarette smoke extract directly upregulated the expression of CYP1B1.
Conclusion
This study validated the established role of CYP1B1 and AHRR in xenobiotic metabolism of tobacco smoke and highlights the importance of epigenetic regulation for these genes. For the first time, we give evidence of this role for the oral masticatory mucosa.
Chronic alcohol use leads to specific neurobiological alterations in the dopaminergic brain reward system, which probably are leading to a reward deficiency syndrome in alcohol dependence. The purpose of our study was to examine the effects of such hypothesized neurobiological alterations on the behavioral level, and more precisely on the implicit and explicit reward learning. Alcohol users were classified as dependent drinkers (using the DSM-IV criteria), binge drinkers (using criteria of the USA National Institute on Alcohol Abuse and Alcoholism) or low-risk drinkers (following recommendations of the Scientific board of trustees of the German Health Ministry). The final sample (n = 94) consisted of 36 low-risk alcohol users, 37 binge drinkers and 21 abstinent alcohol dependent patients. Participants were administered a probabilistic implicit reward learning task and an explicit reward- and punishment-based trial-and-error-learning task. Alcohol dependent patients showed a lower performance in implicit and explicit reward learning than low risk drinkers. Binge drinkers learned less than low-risk drinkers in the implicit learning task. The results support the assumption that binge drinking and alcohol dependence are related to a chronic reward deficit. Binge drinking accompanied by implicit reward learning deficits could increase the risk for the development of an alcohol dependence.
Biofabrication aims to fabricate biologically functional products through bioprinting or bioassembly (Groll et al 2016 Biofabrication 8 013001). In biofabrication processes, cells are positioned at defined coordinates in three-dimensional space using automated and computer controlled techniques (Moroni et al 2018 Trends Biotechnol. 36 384–402), usually with the aid of biomaterials that are either (i) directly processed with the cells as suspensions/dispersions, (ii) deposited simultaneously in a separate printing process, or (iii) used as a transient support material. Materials that are suited for biofabrication are often referred to as bioinks and have become an important area of research within the field. In view of this special issue on bioinks, we aim herein to briefly summarize the historic evolution of this term within the field of biofabrication. Furthermore, we propose a simple but general definition of bioinks, and clarify its distinction from biomaterial inks.
Animals must slow or halt locomotion to integrate sensory inputs or to change direction. In Caenorhabditis elegans, the GABAergic and peptidergic neuron RIS mediates developmentally timed quiescence. Here, we show RIS functions additionally as a locomotion stop neuron. RIS optogenetic stimulation caused acute and persistent inhibition of locomotion and pharyngeal pumping, phenotypes requiring FLP-11 neuropeptides and GABA. RIS photoactivation allows the animal to maintain its body posture by sustaining muscle tone, yet inactivating motor neuron oscillatory activity. During locomotion, RIS axonal Ca2+ signals revealed functional compartmentalization: Activity in the nerve ring process correlated with locomotion stop, while activity in a branch correlated with induced reversals. GABA was required to induce, and FLP-11 neuropeptides were required to sustain locomotion stop. RIS attenuates neuronal activity and inhibits movement, possibly enabling sensory integration and decision making, and exemplifies dual use of one cell across development in a compact nervous system.
Major depressive disorder and the anxiety disorders are highly prevalent, disabling and moderately heritable. Depression and anxiety are also highly comorbid and have a strong genetic correlation (r(g) approximate to 1). Cognitive behavioural therapy is a leading evidence-based treatment but has variable outcomes. Currently, there are no strong predictors of outcome. Therapygenetics research aims to identify genetic predictors of prognosis following therapy. We performed genome-wide association meta-analyses of symptoms following cognitive behavioural therapy in adults with anxiety disorders (n = 972), adults with major depressive disorder (n = 832) and children with anxiety disorders (n = 920; meta-analysis n = 2724). We (h(SNP)(2)) and polygenic scoring was used to examine genetic associations between therapy outcomes and psychopathology, personality and estimated the variance in therapy outcomes that could be explained by common genetic variants learning. No single nucleotide polymorphisms were strongly associated with treatment outcomes. No significant estimate of h(SNP)(2) could be obtained, suggesting the heritability of therapy outcome is smaller than our analysis was powered to detect. Polygenic scoring failed to detect genetic overlap between therapy outcome and psychopathology, personality or learning. This study is the largest therapygenetics study to date. Results are consistent with previous, similarly powered genome-wide association studies of complex traits.
A new strategy is demonstrated for the synthesis of warped, negatively curved, all‐sp\(^2\)‐carbon π‐scaffolds. Multifold C−C coupling reactions are used to transform a polyaromatic borinic acid into a saddle‐shaped polyaromatic hydrocarbon (2 ) bearing two heptagonal rings. Notably, this Schwarzite substructure is synthesized in only two steps from an unfunctionalized alkene. A highly warped structure of 2 was revealed by X‐ray crystallographic studies and pronounced flexibility of this π‐scaffold was ascertained by experimental and computational studies. Compound 2 exhibits excellent solubility, visible range absorption and fluorescence, and readily undergoes two reversible one‐electron oxidations at mild potentials.
Although usually asymptomatically colonizing the human nasopharynx, the Gram-negative bacterium Neisseria meningitidis (meningococcus) can spread to the blood stream and cause invasive disease. For survival in blood, N. meningitidis evades the complement system by expression of a polysaccharide capsule and surface proteins sequestering the complement regulator factor H (fH). Meningococcal strains belonging to the sequence type (ST-) 41/44 clonal complex (cc41/44) cause a major proportion of serogroup B meningococcal disease worldwide, but they are also common in asymptomatic carriers. Proteome analysis comparing cc41/44 isolates from invasive disease versus carriage revealed differential expression levels of the outer membrane protein NspA, which binds fH. Deletion of nspA reduced serum resistance and NspA expression correlated with fH sequestration. Expression levels of NspA depended on the length of a homopolymeric tract in the nspA promoter: A 5-adenosine tract dictated low NspA expression, whereas a 6-adenosine motif guided high NspA expression. Screening German cc41/44 strain collections revealed the 6-adenosine motif in 39% of disease isolates, but only in 3.4% of carriage isolates. Thus, high NspA expression is associated with disease, but not strictly required. The 6-adenosine nspA promoter is most common to the cc41/44, but is also found in other hypervirulent clonal complexes.
In this work models for molecular networks consisting of ordinary differential equations are extended by terms that include the interaction of the corresponding molecular network with the environment that the molecular network is embedded in. These terms model the effects of the external stimuli on the molecular network. The usability of this extension is demonstrated with a model of a circadian clock that is extended with certain terms and reproduces data from several experiments at the same time.
Once the model including external stimuli is set up, a framework is developed in order to calculate external stimuli that have a predefined desired effect on the molecular network. For this purpose the task of finding appropriate external stimuli is formulated as a mathematical optimal control problem for which in order to solve it a lot of mathematical methods are available. Several methods are discussed and worked out in order to calculate a solution for the corresponding optimal control problem. The application of the framework to find pharmacological intervention points or effective drug combinations is pointed out and discussed. Furthermore the framework is related to existing network analysis tools and their combination for network analysis in order to find dedicated external stimuli is discussed.
The total framework is verified with biological examples by comparing the calculated results with data from literature. For this purpose platelet aggregation is investigated based on a corresponding gene regulatory network and associated receptors are detected. Furthermore a transition from one to another type of T-helper cell is analyzed in a tumor setting where missing agents are calculated to induce the corresponding switch in vitro. Next a gene regulatory network of a myocardiocyte is investigated where it is shown how the presented framework can be used to compare different treatment strategies with respect to their beneficial effects and side effects quantitatively. Moreover a constitutively activated signaling pathway, which thus causes maleficent effects, is modeled and intervention points with corresponding treatment strategies are determined that steer the gene regulatory network from a pathological expression pattern to physiological one again.
Background
High-intensity interval training (HIIT) is frequently employed to improve the endurance of various types of athletes. To determine whether youth soccer players may benefit from the intermittent load and time efficiency of HIIT, we performed a meta-analysis of the relevant scientific literature.
Objectives
Our primary objective was to compare changes in various physiological parameters related to the performance of youth soccer players in response to running-based HIIT to the effects of other common training protocols (i.e., small-sided games, technical training and soccer-specific training, or high-volume endurance training). A secondary objective was to compare specifically running-based HIIT to a soccer-specific form of HIIT known as small-sided games (SSG) in this same respect, since this latter type of training is being discussed extensively by coaches.
Method
A systematic search of the PubMed, SPORTDiscus, and Web of Science databases was performed in August of 2017 and updated during the review process in December of 2018. The criteria for inclusion of articles for analysis were as follows: (1) comparison of HIIT to SSG or some other training protocol employing a pre-post design, (2) involvement of healthy young athletes (≤ 18 years old), and (3) assessment of variables related to endurance or soccer performance. Hedges’ g effect size (dppc2) and associated 95% confidence intervals for the comparison of the responses to HIIT and other interventions were calculated.
Results
Nine studies, involving 232 young soccer players (mean age 16.2 ± 1.6 years), were examined. Endurance training in the form of HIIT or SSG produced similar positive effects on most parameters assessed, including peak oxygen uptake and maximal running performance during incremental running (expressed as Vmax or maximal aerobic speed (MAS)), shuttle runs (expressed as the distance covered or time to exhaustion), and time-trials, as well as submaximal variables such as running economy and running velocity at the lactate threshold. HIIT induced a moderate improvement in soccer-related tests involving technical exercises with the soccer ball and other game-specific parameters (i.e., total distance covered, number of sprints, and number of involvements with the ball). Neuromuscular parameters were largely unaffected by HIIT or SSG.
Conclusion
The present meta-analysis indicates that HIIT and SSG have equally beneficial impacts on variables related to the endurance and soccer-specific performance of youth soccer players, but little influence on neuromuscular performance.
Adrenocortical carcinoma (ACC) is a rare tumor and prognosis is overall poor but heterogeneous. Mitotane (MT) has been used for treatment of ACC for decades, either alone or in combination with cytotoxic chemotherapy. Even at doses up to 6 g per day, more than half of the patients do not achieve targeted plasma concentration (14–20 mg L\(^{-1}\)) even after many months of treatment due to low water solubility, bioavailability, and unfavorable pharmacokinetic profile. Here a novel MT nanoformulation with very high MT concentrations in physiological aqueous media is reported. The MT‐loaded nanoformulations are characterized by Fourier transform infrared spectroscopy, differential scanning calorimetry, and powder X‐ray diffraction which confirms the amorphous nature of the drug. The polymer itself does not show any cytotoxicity in adrenal and liver cell lines. By using the ACC model cell line NCI‐H295 both in monolayers and tumor cell spheroids, micellar MT is demonstrated to exhibit comparable efficacy to its ethanol solution. It is postulated that this formulation will be suitable for i.v. application and rapid attainment of therapeutic plasma concentrations. In conclusion, the micellar formulation is considered a promising tool to alleviate major drawbacks of current MT treatment while retaining bioactivity toward ACC in vitro.
Due to the complexityof research objects, theoretical concepts, and stimuli in media research, researchers in psychology and communications presumably need sophisticated measures beyond self-report scales to answer research questions on media use processes. The present study evaluates stimulus-dependent structure in spontaneous eye-blink behavior as an objective, corroborative measure for the media use phenomenon of spatial presence. To this end, a mixed methods approach is used in an experimental setting to collect, combine, analyze, and interpret data from standardized participant self-report, observation of participant behavior, and content analysis of the media stimulus. T-pattern detection is used to analyze stimulus-dependent blinking behavior, and this structural data is then contrasted with self-report data. The combined results show that behavioral indicators yield the predicted results, while self-report data shows unpredicted results that are not predicted by the underlying theory. The use of a mixed methods approach offered insights that support further theory development and theory testing beyond a traditional, mono-method experimental approach.
Background
Germinal center-derived B cell lymphomas are tumors of the lymphoid tissues representing one of the most heterogeneous malignancies. Here we characterize the variety of transcriptomic phenotypes of this disease based on 873 biopsy specimens collected in the German Cancer Aid MMML (Molecular Mechanisms in Malignant Lymphoma) consortium. They include diffuse large B cell lymphoma (DLBCL), follicular lymphoma (FL), Burkitt’s lymphoma, mixed FL/DLBCL lymphomas, primary mediastinal large B cell lymphoma, multiple myeloma, IRF4-rearranged large cell lymphoma, MYC-negative Burkitt-like lymphoma with chr. 11q aberration and mantle cell lymphoma.
Methods
We apply self-organizing map (SOM) machine learning to microarray-derived expression data to generate a holistic view on the transcriptome landscape of lymphomas, to describe the multidimensional nature of gene regulation and to pursue a modular view on co-expression. Expression data were complemented by pathological, genetic and clinical characteristics.
Results
We present a transcriptome map of B cell lymphomas that allows visual comparison between the SOM portraits of different lymphoma strata and individual cases. It decomposes into one dozen modules of co-expressed genes related to different functional categories, to genetic defects and to the pathogenesis of lymphomas. On a molecular level, this disease rather forms a continuum of expression states than clearly separated phenotypes. We introduced the concept of combinatorial pattern types (PATs) that stratifies the lymphomas into nine PAT groups and, on a coarser level, into five prominent cancer hallmark types with proliferation, inflammation and stroma signatures. Inflammation signatures in combination with healthy B cell and tonsil characteristics associate with better overall survival rates, while proliferation in combination with inflammation and plasma cell characteristics worsens it. A phenotypic similarity tree is presented that reveals possible progression paths along the transcriptional dimensions. Our analysis provided a novel look on the transition range between FL and DLBCL, on DLBCL with poor prognosis showing expression patterns resembling that of Burkitt’s lymphoma and particularly on ‘double-hit’ MYC and BCL2 transformed lymphomas.
Conclusions
The transcriptome map provides a tool that aggregates, refines and visualizes the data collected in the MMML study and interprets them in the light of previous knowledge to provide orientation and support in current and future studies on lymphomas and on other cancer entities.
The culture of human induced pluripotent stem cells (hiPSCs) at large-scale becomes feasible with the aid of scalable suspension setups in continuously stirred tank reactors (CSTRs). Suspension cul- tures of hiPSCs are characterized by the self-aggregation of single cells into macroscopic cell aggre- gates that increase in size over time. The development of these free-floating aggregates is dependent on the culture vessel and thus represents a novel process parameter that is of particular interest for hiPSC suspension culture scaling. Further, aggregates surpassing a critical size are prone to spon- taneous differentiation or cell viability loss. In this regard, and, for the first time, a hiPSC-specific suspension culture unit was developed that utilizes in situ microscope imaging to monitor and to characterize hiPSC aggregation in one specific CSTR setup to a statistically significant degree while omitting the need for error-prone and time-intensive sampling. For this purpose, a small-scale CSTR system was designed and fabricated by fused deposition modeling (FDM) using an in-house 3D- printer. To provide a suitable cell culture environment for the CSTR system and in situ microscope, a custom-built incubator was constructed to accommodate all culture vessels and process control devices. Prior to manufacture, the CSTR design was characterized in silico for standard engineering parameters such as the specific power input, mixing time, and shear stress using computational fluid dynamics (CFD) simulations. The established computational model was successfully validated by comparing CFD-derived mixing time data to manual measurements. Proof for system functionality was provided in the context of long-term expansion (4 passages) of hiPSCs. Thereby, hiPSC aggregate size development was successfully tracked by in situ imaging of CSTR suspensions and subsequent automated image processing. Further, the suitability of the developed hiPSC culture unit was proven by demonstrating the preservation of CSTR-cultured hiPSC pluripotency on RNA level by qRT-PCR and PluriTest, and on protein level by flow cytometry.
The measurement of the mass of the $W$ boson is currently one of the most promising precision analyses of the Standard Model, that could ultimately reveal a hint for new physics.
The mass of the $W$ boson is determined by comparing the $W$ boson, which cannot be reconstructed directly, to the $Z$ boson, where the full decay signature is available. With the help of Monte Carlo simulations one can extrapolate from the $Z$ boson to the $W$ boson.
Technically speaking, the measurement of the $W$ boson mass is performed by comparing data taken by the ATLAS experiment to a set of calibrated Monte Carlo simulations, which reflect different mass hypotheses.\
A dedicated calibration of the reconstructed objects in the simulations is crucial for a high precision of the measured value.
The comparison of simulated $Z$ boson events to reconstructed $Z$ boson candidates in data allows to derive event weights and scale factors for the calibration.
This thesis presents a new approach to reweight the hadronic recoil in the simulations. The focus of the calibration is on the average hadronic activity visible in the mean of the scalar sum of the hadronic recoil $\Sigma E_T$ as a function of pileup. In contrast to the standard method, which directly reweights the scalar sum, the dependency to the transverse boson momentum is less strongly affected here.
The $\Sigma E_T$ distribution is modeled first by means of its pileup dependency. Then, the remaining differences in the resolution of the vector sum of the hadronic recoil are scaled. This is done separately for the parallel and the pterpendicular component of the hadronic recoil with respect to the reconstructed boson.
This calibration was developed for the dataset taken by the ATLAS experiment at a center of mass energy of $8\,\textrm{TeV}$ in 2012. In addition, the same reweighting procedure is applied to the recent dataset with a low pileup contribution, the \textit{lowMu} runs at $5\,\textrm{TeV}$ and at $13\,\textrm{TeV}$, taken by ATLAS in November 2017. The dedicated aspects of the reweighting procedure are presented in this thesis. It can be shown that this reweighting approach improves the agreement between data and the simulations effectively for all datasets.
The uncertainties of this reweighting approach as well as the statistical errors are evaluated for a $W$ mass measurement by a template fit to pseudodata for the \textit{lowMu} dataset. A first estimate of these uncertainties is given here. For the pfoEM algorithm a statistical uncertainty of $17\,\text{MeV}$ for the $5\,\textrm{TeV}$ dataset and of $18\,\text{MeV}$ for the $13\,\textrm{TeV}$ are found for the $W \rightarrow \mu \nu$ analysis. The systematic uncertainty introduced by the resolution scaling has the largest effect, a value of $15\,\text{MeV}$ is estimated for the $13\,\textrm{TeV}$ dataset in the muon channel.
Regardless of political boundaries, river basins are a functional unit of the Earth’s land surface and provide an abundance of resources for the environment and humans. They supply livelihoods supported by the typical characteristics of large river basins, such as the provision of freshwater, irrigation water, and transport opportunities. At the same time, they are impacted i.e., by human-induced environmental changes, boundary conflicts, and upstream–downstream inequalities. In the framework of water resource management, monitoring of river basins is therefore of high importance, in particular for researchers, stake-holders and decision-makers. However, land surface and surface water properties of many major river basins remain largely unmonitored at basin scale. Several inventories exist, yet consistent spatial databases describing the status of major river basins at global scale are lacking. Here, Earth observation (EO) is a potential source of spatial information providing large-scale data on the status of land surface properties. This review provides a comprehensive overview of existing research articles analyzing major river basins primarily using EO. Furthermore, this review proposes to exploit EO data together with relevant open global-scale geodata to establish a database and to enable consistent spatial analyses and evaluate past and current states of major river basins.
This thesis deals with a new so-called sequential quadratic Hamiltonian (SQH) iterative scheme to solve optimal control problems with differential models and cost functionals ranging from smooth to discontinuous and non-convex. This scheme is based on the Pontryagin maximum principle (PMP) that provides necessary optimality conditions for an optimal solution. In this framework, a Hamiltonian function is defined that attains its minimum pointwise at the optimal solution of the corresponding optimal control problem. In the SQH scheme, this Hamiltonian function is augmented by a quadratic penalty term consisting of the current control function and the control function from the previous iteration. The heart of the SQH scheme is to minimize this augmented Hamiltonian function pointwise in order to determine a control update. Since the PMP does not require any differ- entiability with respect to the control argument, the SQH scheme can be used to solve optimal control problems with both smooth and non-convex or even discontinuous cost functionals. The main achievement of the thesis is the formulation of a robust and efficient SQH scheme and a framework in which the convergence analysis of the SQH scheme can be carried out. In this framework, convergence of the scheme means that the calculated solution fulfills the PMP condition. The governing differential models of the considered optimal control problems are ordinary differential equations (ODEs) and partial differential equations (PDEs). In the PDE case, elliptic and parabolic equations as well as the Fokker-Planck (FP) equation are considered. For both the ODE and the PDE cases, assumptions are formulated for which it can be proved that a solution to an optimal control problem has to fulfill the PMP. The obtained results are essential for the discussion of the convergence analysis of the SQH scheme. This analysis has two parts. The first one is the well-posedness of the scheme which means that all steps of the scheme can be carried out and provide a result in finite time. The second part part is the PMP consistency of the solution. This means that the solution of the SQH scheme fulfills the PMP conditions. In the ODE case, the following results are obtained that state well-posedness of the SQH scheme and the PMP consistency of the corresponding solution. Lemma 7 states the existence of a pointwise minimum of the augmented Hamiltonian. Lemma 11 proves the existence of a weight of the quadratic penalty term such that the minimization of the corresponding augmented Hamiltonian results in a control updated that reduces the value of the cost functional. Lemma 12 states that the SQH scheme stops if an iterate is PMP optimal. Theorem 13 proves the cost functional reducing properties of the SQH control updates. The main result is given in Theorem 14, which states the pointwise convergence of the SQH scheme towards a PMP consistent solution. In this ODE framework, the SQH method is applied to two optimal control problems. The first one is an optimal quantum control problem where it is shown that the SQH method converges much faster to an optimal solution than a globalized Newton method. The second optimal control problem is an optimal tumor treatment problem with a system of coupled highly non-linear state equations that describe the tumor growth. It is shown that the framework in which the convergence of the SQH scheme is proved is applicable for this highly non-linear case. Next, the case of PDE control problems is considered. First a general framework is discussed in which a solution to the corresponding optimal control problem fulfills the PMP conditions. In this case, many theoretical estimates are presented in Theorem 59 and Theorem 64 to prove in particular the essential boundedness of the state and adjoint variables. The steps for the convergence analysis of the SQH scheme are analogous to that of the ODE case and result in Theorem 27 that states the PMP consistency of the solution obtained with the SQH scheme. This framework is applied to different elliptic and parabolic optimal control problems, including linear and bilinear control mechanisms, as well as non-linear state equations. Moreover, the SQH method is discussed for solving a state-constrained optimal control problem in an augmented formulation. In this case, it is shown in Theorem 30 that for increasing the weight of the augmentation term, which penalizes the violation of the state constraint, the measure of this state constraint violation by the corresponding solution converges to zero. Furthermore, an optimal control problem with a non-smooth L\(^1\)-tracking term and a non-smooth state equation is investigated. For this purpose, an adjoint equation is defined and the SQH method is used to solve the corresponding optimal control problem. The final part of this thesis is devoted to a class of FP models related to specific stochastic processes. The discussion starts with a focus on random walks where also jumps are included. This framework allows a derivation of a discrete FP model corresponding to a continuous FP model with jumps and boundary conditions ranging from absorbing to totally reflecting. This discussion allows the consideration of the drift-control resulting from an anisotropic probability of the steps of the random walk. Thereafter, in the PMP framework, two drift-diffusion processes and the corresponding FP models with two different control strategies for an optimal control problem with an expectation functional are considered. In the first strategy, the controls depend on time and in the second one, the controls depend on space and time. In both cases a solution to the corresponding optimal control problem is characterized with the PMP conditions, stated in Theorem 48 and Theorem 49. The well-posedness of the SQH scheme is shown in both cases and further conditions are discussed that ensure the convergence of the SQH scheme to a PMP consistent solution. The case of a space and time dependent control strategy results in a special structure of the corresponding PMP conditions that is exploited in another solution method, the so-called direct Hamiltonian (DH) method.
The identification of biomarker signatures is important for cancer diagnosis and prognosis. However, the detection of clinical reliable signatures is influenced by limited data availability, which may restrict statistical power. Moreover, methods for integration of large sample cohorts and signature identification are limited. We present a step-by-step computational protocol for functional gene expression analysis and the identification of diagnostic and prognostic signatures by combining meta-analysis with machine learning and survival analysis. The novelty of the toolbox lies in its all-in-one functionality, generic design, and modularity. It is exemplified for lung cancer, including a comprehensive evaluation using different validation strategies. However, the protocol is not restricted to specific disease types and can therefore be used by a broad community. The accompanying R package vignette runs in ~1 h and describes the workflow in detail for use by researchers with limited bioinformatics training.
Background
Current standard of treatment for newly diagnosed patients with glioblastoma (GBM) is surgical resection with adjuvant normofractionated radiotherapy (NFRT) combined with temozolomide (TMZ) chemotherapy. Hyperfractionated accelerated radiotherapy (HFRT) which was known as an option from randomized controlled trials before the temozolomide era has not been compared to the standard therapy in a randomized setting combined with TMZ.
Methods
Data of 152 patients with newly diagnosed GBM treated from 10/2004 until 7/2018 at a single tertiary care institution were extracted from a clinical database and retrospectively analyzed. Thirty-eight patients treated with NFRT of 60 Gy in 30 fractions (34 with simultaneous and 2 with sequential TMZ) were compared to 114 patients treated with HFRT of 54.0 Gy in 30 fraction of 1.8 Gy twice daily (109 with simultaneous and 3 with sequential TMZ). The association between treatment protocol and other variables with overall survival (OS) was assessed using univariable and multivariable Cox regression analysis; the latter was performed using variables selected by the LASSO method.
Results
Median overall survival (OS) was 20.3 month for the entire cohort. For patients treated with NFRT median OS was 24.4 months compared to 18.5 months in patients treated with HFRT (p = 0.131). In univariable regression analysis the use of dexamethasone during radiotherapy had a significant negative impact on OS in both patient groups, HR 2.21 (95% CI 1.47–3.31, p = 0.0001). In multivariable analysis adjusted for O6-methylguanine-DNA methyl-transferase (MGMT) promotor methylation status, salvage treatment and secondary GBM, the use of dexamethasone was still a negative prognostic factor, HR 1.95 (95% CI 1.21–3.13, p = 0.006). Positive MGMT-methylation status and salvage treatment were highly significant positive prognostic factors. There was no strong association between treatment protocol and OS (p = 0.504).
Conclusions
Our retrospective analysis supports the hypothesis of equivalence between HFRT and the standard protocol of treatment for GBM. For those patients who are willing to obtain the benefit of shortening the course of radiochemotherapy, HFRT may be an alternative with comparable efficacy although it was not yet tested in a large prospective randomized study against the current standard. The positive influence of salvage therapy and negative impact of concomitant use of corticosteroids should be addressed in future prospective trials. To confirm our results, we plan to perform a pooled analysis with other tertiary clinics in order to achieve better statistical reliability.
This work deals with the development and application of novel quantum Monte Carlo methods to simulate fermion-boson models. Our developments are based on the path-integral formalism, where the bosonic degrees of freedom are integrated out exactly to obtain a retarded fermionic interaction. We give an overview of three methods that can be used to simulate retarded interactions. In particular, we develop a novel quantum Monte Carlo method with global directed-loop updates that solves the autocorrelation problem of previous approaches and scales linearly with system size. We demonstrate its efficiency for the Peierls transition in the Holstein model and discuss extensions to other fermion-boson models as well as spin-boson models. Furthermore, we show how with the help of generating functionals bosonic observables can be recovered directly from the Monte Carlo configurations. This includes estimators for the boson propagator, the fidelity susceptibility, and the specific heat of the Holstein model. The algorithmic developments of this work allow us to study the specific heat of the spinless Holstein model covering its entire parameter range. Its key features are explained from the single-particle spectral functions of electrons and phonons. In the adiabatic limit, the spectral properties are calculated exactly as a function of temperature using a classical Monte Carlo method and compared to results for the Su-Schrieffer-Heeger model.
The importance of Clinical Data Warehouses (CDW) has increased significantly in recent years as they support or enable many applications such as clinical trials, data mining, and decision making.
CDWs integrate Electronic Health Records which still contain a large amount of text data, such as discharge letters or reports on diagnostic findings in addition to structured and coded data like ICD-codes of diagnoses.
Existing CDWs hardly support features to gain information covered in texts.
Information extraction methods offer a solution for this problem but they have a high and long development effort, which can only be carried out by computer scientists.
Moreover, such systems only exist for a few medical domains.
This paper presents a method empowering clinicians to extract information from texts on their own. Medical concepts can be extracted ad hoc from e.g. discharge letters, thus physicians can work promptly and autonomously. The proposed system achieves these improvements by efficient data storage, preprocessing, and with powerful query features. Negations in texts are recognized and automatically excluded, as well as the context of information is determined and undesired facts are filtered, such as historical events or references to other persons (family history).
Context-sensitive queries ensure the semantic integrity of the concepts to be extracted.
A new feature not available in other CDWs is to query numerical concepts in texts and even filter them (e.g. BMI > 25).
The retrieved values can be extracted and exported for further analysis.
This technique is implemented within the efficient architecture of the PaDaWaN CDW and evaluated with comprehensive and complex tests.
The results outperform similar approaches reported in the literature.
Ad hoc IE determines the results in a few (milli-) seconds and a user friendly GUI enables interactive working, allowing flexible adaptation of the extraction.
In addition, the applicability of this system is demonstrated in three real-world applications at the Würzburg University Hospital (UKW).
Several drug trend studies are replicated: Findings of five studies on high blood pressure, atrial fibrillation and chronic renal failure can be partially or completely confirmed in the UKW. Another case study evaluates the prevalence of heart failure in inpatient hospitals using an algorithm that extracts information with ad hoc IE from discharge letters and echocardiogram report (e.g. LVEF < 45 ) and other sources of the hospital information system.
This study reveals that the use of ICD codes leads to a significant underestimation (31%) of the true prevalence of heart failure.
The third case study evaluates the consistency of diagnoses by comparing structured ICD-10-coded diagnoses with the diagnoses described in the diagnostic section of the discharge letter.
These diagnoses are extracted from texts with ad hoc IE, using synonyms generated with a novel method.
The developed approach can extract diagnoses from the discharge letter with a high accuracy and furthermore it can prove the degree of consistency between the coded and reported diagnoses.
Insulin-like growth factor-I (IGF-I) is a 70-amino acid polypeptide with a molecular weight of approximately 7.6 kDa acting as an anabolic effector. It is essential for tissue growth and remodeling. Clinically, it is used for the treatment of growth disorders and has been proposed for various other applications including musculoskeletal diseases. Unlike insulin, IGF-I is complexed to at least six high-affinity binding proteins (IGFBPs) exerting homeostatic effects by modulating IGF-I availability to its receptor (IGF-IR) on most cells in the body as well as changing the distribution of the growth factor within the organism.1-3 Short half-lived IGF-I have been the driving forces for the design of localized IGF-I depot systems or protein modification with enhanced pharmacokinetic properties. In this thesis, we endeavor to present a versatile biologic into which galenical properties were engineered through chemical synthesis, e.g., by site-specific coupling of biomaterials or complex composites to IGF-I. For that, we redesigned the therapeutic via genetic codon expansion resulting in an alkyne introduced IGF-I, thereby becoming a substrate for biorthogonal click chemistries yielding a site-specific decoration.
In this approach, an orthogonal pyrrolysine tRNA synthetase (PylRS)/tRNAPyl CUA pair was employed to direct the co-translational incorporation of an unnatural amino acid—¬propargyl-L-lysine (plk)—bearing a clickable alkyne functional handle into IGF-I in response to the amber stop codon (UAG) introduced into the defined position in the gene of interest. We summarized the systematic optimization of upstream and downstream process alike with the ultimate goal to increase the yield of plk modified IGF-I therapeutic, from the construction of gene fusions resulting in (i) Trx-plk-IGF-I fusion variants, (ii) naturally occurring pro-IGF-I protein (IGF-I + Ea peptide) (plk-IGF-I Ea), over the subsequent bacterial cultivation and protein extraction to the final chromatographic purification. The opportunities and hurdles of all of the above strategies were discussed. Evidence was provided that the wild-type IGF-I yields were pure by exploiting the advantages of the pHisTrx expression vector system in concert with a thrombin enzyme with its highly specific proteolytic digestion site and multiple-chromatography steps. The alkyne functionality was successfully introduced into IGF-I by amber codon suppression. The proper folding of plk-IGF-I Ea was assessed by WST-1 proliferation assay and the detection of phosphorylated AKT in MG-63 cell lysate. The purity of plk-IGF-I Ea was monitored with RP-HPLC and SDS-PAGE analysis. This work also showed site-specific coupling an alkyne in plk-IGF-I Ea by copper (I)-catalyzed azide-alkyne cycloaddition (CuAAC) with potent activities in vitro. The site-specific immobilization of plk-IGF-I Ea to the model carrier (i.e., agarose beads) resulted in enhanced cell proliferation and adhesion surrounding the IGF-I-presenting particles. Cell proliferation and differentiation were enhanced in the accessibility of IGF-I decorated beads, reflecting the multivalence on cellular performance.
Next, we aimed at effectively showing the disease environment by co-delivery of fibroblast growth factor 2 (FGF2) and IGF-I, deploying localized matrix metalloproteinases (MMPs) upregulation as a surrogate marker driving the response of the drug delivery system. For this purpose, we genetically engineered FGF2 variant containing an (S)-2-amino-6-(((2-azidoethoxy)carbonyl)amino)hexanoic acid incorporated at its N-terminus, followed by an MMPs-cleavable linker (PCL) and FGF2 sequence, thereby allowing site-directed, specific decoration of the resultant azide-PCL-FGF2 with the previously mentioned plk-IGF-I Ea to generate defined protein-protein conjugates with a PCL in between. The click reaction between plk-IGF-I Ea and azide-PCL-FGF2 was systematically optimized to increase the yield of IGF-FGF conjugates, including reaction temperature, incubation duration, the addition of anionic detergent, and different ratios of the participating biopharmaceutics. The challenge here was that CuAAC reaction components or conditions might oxidize free cysteines of azide-PCL-FGF2 and future work needs to present the extent of activity retention after conjugation. Furthermore, our study provides potential options for dual-labeling of IGF-I either by the introduction of unnatural amino acids within two distinct positions of the protein of interest for parallel “double-click” labeling of the resultant plk-IGF-I Ea-plk or by using a combination of enzymatic-catalyzed and CuAAC bioorthogonal coupling strategies for sequentially dual-labeling of plk-IGF-I Ea.
In conclusion, genetic code expansion in combination with click-chemistry provides the fundament for novel IGF-I analogs allowing unprecedented site specificity for decoration. Considerable progress towards IGF-I based therapies with enhanced pharmacological properties was made by demonstrating the feasibility of the expression of plk incorporated IGF-I using E. coli and retained activity of unconjugated and conjugated IGF-I variant. Dual-labeling of IGF-I provides further insights into the functional requirements of IGF-I. Still, further investigation warrants to develop precise IGF-I therapy through unmatched temporal and spatial regulation of the pleiotropic IGF-I.
Nach der Präparation von gewaschenen Thrombozyten, einem wichtigen Ausgangsmaterial für die experimentelle Forschung oder für die Transfusionsmedizin, tritt bekannterweise ein zunehmender Verlust der ADP-vermittelten Aggregationsfähigkeit ein. Die verminderte Funktionsfähigkeit von Thromboyzten nach dem Waschvorgang kann somit auch experimentelle Ergebnisse beeinflussten.
Allerdings sind die dafür verantwortlichen molekularen Mechanismen bisher nicht aufgeklärt, sodass in dieser Dissertationsarbeit molekulare sowie auch funktionelle Vorgänge untersucht wurden, die zum bekannten Phänomen des raschen Verlustes der ADP-vermittelten Aggregationsfähigkeit gewaschener Thrombozyten führen.
Die Wirkung von ADP wird über die drei purinergen Rezeptoren P2Y1, P2X1 und P2Y12 vermittelt wird. Daher wurde zunächst die ADP-induzierte Aggregationsfähigkeit alleine bzw. unter Kostimulation mit Epinephrin oder Serotonin - zwei Induktoren, deren Rezeptoren mit analogen Signalwegen wie die ADP-Rezeptoren P2Y1 bzw. P2Y12 gekoppelt sind - bestimmt. Um Hinweise zu erhalten, wie die Abnahme der ADP-vermittelten Reaktivität von gewaschenen Thrombozyten mit der purinergen Rezeptorexpression und -distribution sowie mit der nachgeschalteten Signalweiterleitung im Zusammenhang steht, wurde zudem die Expression purinerger Rezeptoren auf der Thrombozytenoberfläche bzw. die Konzentration von purinergen Rezeptoren im Zytosol gewaschener Thrombozyten mittels Durchflusszytometrie bzw. ELISA gemessen.
Es zeigte sich, dass die Funktion der den purinergen Rezeptoren nachgeschalteten Signalwege während der Lagerungszeit zunehmend beeinträchtigt wird, aber zumindest teilweise erhalten bleibt, wie anhand von Effekten durch Kostimulation mit den Induktoren Epinephrin und Serotonin gezeigt werden konnte. Die Distribution der Rezeptoren zwischen der Thrombozytenoberfläche und den intrazellulären Kompartimenten unterliegt komplexen Prozessen, die induktorabhängig reguliert sind. Eine initiale Zunahme der Expression von ADP-Rezeptoren während der Lagerung von gewaschenen Thrombozyten geht dabei nicht einher mit der Aufrechterhaltung der ADP-induzierten Aggregation.
In der Schlussfolgerung ist die fortschreitende Degeneration der ADP-vermittelten Aggregation - neben einem Rückgang der Rezeptorexpression nach mehr als einer Stunde Lagerungszeit - vor allem auf einen funktionellen Verlust der purinergen Rezeptoren zurückzuführen.
Previous magnetic resonance imaging (MRI) studies revealed structural-functional brain reorganization 12 months after gastric-bypass surgery, encompassing cortical and subcortical regions of all brain lobes as well as the cerebellum. Changes in the mean of cluster-wise gray/white matter density (GMD/WMD) were correlated with the individual loss of body mass index (BMI), rendering the BMI a potential marker of widespread surgery-induced brain plasticity. Here, we investigated voxel-by-voxel associations between surgery-induced changes in adiposity, metabolism and inflammation and markers of functional and structural neural plasticity. We re-visited the data of patients who underwent functional and structural MRI, 6 months (n = 27) and 12 months after surgery (n = 22), and computed voxel-wise regression analyses. Only the surgery-induced weight loss was significantly associated with brain plasticity, and this only for GMD changes. After 6 months, weight loss overlapped with altered GMD in the hypothalamus, the brain's homeostatic control site, the lateral orbitofrontal cortex, assumed to host reward and gustatory processes, as well as abdominal representations in somatosensory cortex. After 12 months, weight loss scaled with GMD changes in right cerebellar lobule VII, involved in language-related/cognitive processes, and, by trend, with the striatum, assumed to underpin (food) reward. These findings suggest time-dependent and weight-loss related gray matter plasticity in brain regions involved in the control of eating, sensory processing and cognitive functioning.
Advanced Analytics in Operations Management and Information Systems: Methods and Applications
(2019)
The digital transformation of business and society presents enormous potentials for companies across all sectors. Fueled by massive advances in data generation, computing power, and connectivity, modern organizations have access to gigantic amounts of data. Companies seek to establish data-driven decision cultures to leverage competitive advantages in terms of efficiency and effectiveness. While most companies focus on descriptive tools such as reporting, dashboards, and advanced visualization, only a small fraction already leverages advanced analytics (i.e., predictive and prescriptive analytics) to foster data-driven decision-making today. Therefore, this thesis set out to investigate potential opportunities to leverage prescriptive analytics in four different independent parts.
As predictive models are an essential prerequisite for prescriptive analytics, the first two parts of this work focus on predictive analytics. Building on state-of-the-art machine learning techniques, we showcase the development of a predictive model in the context of capacity planning and staffing at an IT consulting company. Subsequently, we focus on predictive analytics applications in the manufacturing sector. More specifically, we present a data science toolbox providing guidelines and best practices for modeling, feature engineering, and model interpretation to manufacturing decision-makers. We showcase the application of this toolbox on a large data-set from a German manufacturing company.
Merely using the improved forecasts provided by powerful predictive models enables decision-makers to generate additional business value in some situations. However, many complex tasks require elaborate operational planning procedures. Here, transforming additional information into valuable actions requires new planning algorithms. Therefore, the latter two parts of this thesis focus on prescriptive analytics. To this end, we analyze how prescriptive analytics can be utilized to determine policies for an optimal searcher path problem based on predictive models. While rapid advances in artificial intelligence research boost the predictive power of machine learning models, a model uncertainty remains in most settings. The last part of this work proposes a prescriptive approach that accounts for the fact that predictions are imperfect and that the arising uncertainty needs to be considered. More specifically, it presents a data-driven approach to sales-force scheduling. Based on a large data set, a model to predictive the benefit of additional sales effort is trained. Subsequently, the predictions, as well as the prediction quality, are embedded into the underlying team orienteering problem to determine optimized schedules.
Since its first experimental implementation in 2005, single-molecule localization microscopy (SMLM) emerged as a versatile and powerful imaging tool for biological structures with nanometer resolution. By now, SMLM has compiled an extensive track-record of novel insights in sub- and inter- cellular organization.\\
Moreover, since all SMLM techniques rely on the analysis of emission patterns from isolated fluorophores, they inherently allocate molecular information $per$ $definitionem$.\\
Consequently, SMLM transitioned from its origin as pure high-resolution imaging instrument towards quantitative microscopy, where the key information medium is no longer the highly resolved image itself, but the raw localization data set.\\
The work presented in this thesis is part of the ongoing effort to translate those $per$ $se$ molecular information gained by SMLM imaging to insights into the structural organization of the targeted protein or even beyond. Although largely consistent in their objectives, the general distinction between global or segmentation clustering approaches on one side and particle averaging or meta-analyses techniques on the other is usually made.\\
During the course of my thesis, I designed, implemented and employed numerous quantitative approaches with varying degrees of complexity and fields of application.\\ \\
In my first major project, I analyzed the localization distribution of the integral protein gp210 of the nuclear pore complex (NPC) with an iterative \textit{k}-means algorithm. Relating the distinct localization statistics of separated gp210 domains to isolated fluorescent signals led, among others, to the conclusion that the anchoring ring of the NPC consists of 8 homo-dimers of gp210.\\
This is of particular significance, both because it answered a decades long standing question about the nature of the gp210 ring and it showcased the possibility to gain structural information well beyond the resolution capabilities of SMLM by crafty quantification approaches.\\ \\
The second major project reported comprises an extensive study of the synaptonemal complex (SNC) and linked cohesin complexes. Here, I employed a multi-level meta-analysis of the localization sets of various SNC proteins to facilitate the compilation of a novel model of the molecular organization of the major SNC components with so far unmatched extend and detail with isotropic three-dimensional resolution.\\
In a second venture, the two murine cohesin components SMC3 and STAG3 connected to the SNC were analyzed. Applying an adapted algorithm, considering the disperse nature of cohesins, led to the realization that there is an apparent polarization of those cohesin complexes in the SNC, as well as a possible sub-structure of STAG3 beyond the resolution capabilities of SMLM.\\ \\
Other minor projects connected to localization quantification included the study of plasma membrane glycans regarding their overall localization distribution and particular homogeneity as well as the investigation of two flotillin proteins in the membrane of bacteria, forming clusters of distinct shapes and sizes.\\ \\
Finally, a novel approach to three-dimensional SMLM is presented, employing the precise quantification of single molecule emitter intensities. This method, named TRABI, relies on the principles of aperture photometry which were improved for SMLM.\\
With TRABI it was shown, that widely used Gaussian fitting based localization software underestimates photon counts significantly. This mismatch was utilized as a $z$-dependent parameter, enabling the conversion of 2D SMLM data to a virtual 3D space. Furthermore it was demonstrated, that TRABI can be combined beneficially with a multi-plane detection scheme, resulting in superior performance regarding axial localization precision and resolution.\\
Additionally, TRABI has been subsequently employed to photometrically characterize a novel dye for SMLM, revealing superior photo-physical properties at the single-molecule level.\\
Following the conclusion of this thesis, the TRABI method and its applications remains subject of diverse ongoing research.
Background
Chronic neuropathic pain is often associated with anxiety, depressive symptoms, and cognitive impairment with relevant impact on patients` health related quality of life. To investigate the influence of a pro-inflammatory phenotype on affective and cognitive behavior under neuropathic pain conditions, we assessed mice deficient of the B7 homolog 1 (B7-H1), a major inhibitor of inflammatory response.
Results
Adult B7-H1 ko mice and wildtype littermates (WT) received a chronic constriction injury (CCI) of the sciatic nerve, and we assessed mechanical and thermal sensitivity at selected time points. Both genotypes developed mechanical (p < 0.001) and heat hypersensitivity (p < 0.01) 7, 14, and 20 days after surgery. We performed three tests for anxiety-like behavior: the light–dark box, the elevated plus maze, and the open field. As supported by the results of these tests for anxiety-like behavior, no relevant differences were found between genotypes after CCI. Depression-like behavior was assessed using the forced swim test. Also, CCI had no effect on depression like behavior. For cognitive behavior, we applied the Morris water maze for spatial learning and memory and the novel object recognition test for object recognition, long-, and short-term memory. Learning and memory did not differ in B7-H1 ko and WT mice after CCI.
Conclusions
Our study reveals that the impact of B7-H1 on affective-, depression-like- and learning-behavior, and memory performance might play a subordinate role in mice after nerve lesion.
Aging is an independent risk factor for cardiovascular diseases and therefore of particular interest for the prevention of cardiovascular events. However, the mechanisms underlying vascular aging are not well understood. Since carcinoembryonic antigen‐related cell adhesion molecule 1 (CEACAM1) is crucially involved in vascular homeostasis, we sought to identify the role of CEACAM1 in vascular aging. Using human internal thoracic artery and murine aorta, we show that CEACAM1 is upregulated in the course of vascular aging. Further analyses demonstrated that TNF‐α is CEACAM1‐dependently upregulated in the aging vasculature. Vice versa, TNF‐α induces CEACAM1 expression. This results in a feed‐forward loop in the aging vasculature that maintains a chronic pro‐inflammatory milieu. Furthermore, we demonstrate that age‐associated vascular alterations, that is, increased oxidative stress and vascular fibrosis, due to increased medial collagen deposition crucially depend on the presence of CEACAM1. Additionally, age‐dependent upregulation of vascular CEACAM1 expression contributes to endothelial barrier impairment, putatively via increased VEGF/VEGFR‐2 signaling. Consequently, aging‐related upregulation of vascular CEACAM1 expression results in endothelial dysfunction that may promote atherosclerotic plaque formation in the presence of additional risk factors. Our data suggest that CEACAM1 might represent an attractive target in order to delay physiological aging and therefore the transition to vascular disorders such as atherosclerosis.
In Science-Fiction-Literatur und -Filmen begegnen sie uns ständig: Mond- und Marsbasen, menschliche Außenposten im All, die die Fortschrittlichkeit und den Erkenntnisgewinn der Menschheit signalisieren und Reisen in die Tiefen des Alls ermöglichen. Blockbuster wie Der Marsianer (2015) oder Kultserien wie Star Trek werden millionenfach gesehen. Die Menschen scheinen gerne von extraterrestrischen Abenteuern in anderen Zeiten und anderen Welten zu träumen. Aber wie sieht es aus, wenn die Ideen der Leinwände ins Hier und Jetzt geholt werden?
SpaceX, ein privates, amerikanisches Raumfahrtunternehmen und sein Gründer, Elon Musk, haben es sich zum Ziel gesetzt, dem Menschen ein (Über-)Leben auf anderen Planeten zu ermöglichen – nicht erst in Jahrzehnten oder gar Jahrhunderten, sondern in ein paar Jahren. Auf dem International Astronautical Congress 2016 stelle Elon Musk zum ersten Mal konkrete Pläne für eine Kolonisierung des Mars vor, von technischen Vorbereitungen bis zum ersten Eintreffen von Menschen auf dem Roten Planeten im Jahr 2025.
Angesichts des regen Interesses an der fiktionalen Seite des Themas, stellt sich die Frage, wie eine – zumindest angekündigte – Verschiebung in die Realität aufgenommen wird. Anhand einer Analyse der Diskurslage in zwei deutschen Leitmedien (Bild.de und Focus Online) untersucht diese Arbeit die Bewertung des Vorhabens, Einschätzungen zu dessen Machbarkeit und zur Glaubwürdigkeit von SpaceX und Elon Musk und kommt dabei zu gänzlich unerwarteten Ergebnissen.
Einführung
Der laterale Zugang nach Bauer ist weiterhin einer der etabliertesten Standardzugänge für die Hüftendoprothetik in Deutschland und weltweit. Im Zuge der Entwicklung in Richtung „Fast-Track“ Endoprothetik gewinnt die frühe postoperative Phase zunehmend an Bedeutung.
Material und Methoden:
Die vorliegende Arbeit untersucht die Ergebnisse des lateralen OP-Zugangs bis sechs Wochen postoperativ, die in einer übergeordneten prospektiv randomisierten Studie zum Vergleich des lateralen mit dem anterioren MIS-Zugangs erhoben wurden. Diese Studie wurde bereits international publiziert. In der vorliegenden Arbeit sollte ermittelt werden, welche Änderungen sich in den Outcome-Kriterien Aktivität, Funktion und Lebensqualität durch den lateralen Zugang bis sechs Wochen postoperativ ergeben. Hierfür wurden neben den etablierten Scores HHS, AP, SF-36 und PHQ-D der Aktivitätsscore TWB sowie der Funktionsscore XSMFA-D erstmalig in der frühen postoperativen Phase eingesetzt.
Ergebnisse:
Maßgeblich für die Bewertung der Ergebnisqualität sind neben den Ergebnissen der Scores auch die intra- und postoperativen Komplikationen, welche auf einem vergleichsweise niedrigen Niveau waren. 7,5 % der Patienten mit lateralem Zugang zeigten Hinweise für eine Schwächung der Hüftabduktoren, die häufig mit dem transglutealen Zugangsweg in Verbindung gebracht wird. Der laterale Zugang konnte bis sechs Wochen postoperativ und auch im Gesamtkontext der Studie nicht mit einem erhöhten peri- und postoperativen Komplikationsrisiko in Zusammenhang gebracht werden.
Das Outcome in Aktivität, Funktion und Lebensqualität zeigte im prä- und postoperativen W6-Vergleich signifikante Zunahmen in den Scores HHS, XSMFA-D, SF-36 und AP mit hohen Korrelationen untereinander und jeweils anhand der Score-Outcome-Kriterien und im Literaturvergleich guten bis sehr guten Ergebnissen. Dies trifft ebenfalls auf den Einsatz des StepWatch™ präoperativ und im weiteren Verlauf der Studie zu. Im Gesamtkontext der bereits publizierten übergeordneten Studie konnten jedoch für den MIS-Zugang in einzelnen Scores bessere Ergebnisse in den Outcome-Kategorien erzielt werde.
Schlussfolgerungen:
Die Ergebnisse des erstmalig früh postoperativ eingesetzten TWB lassen die Eignung des Scores zur validen Datenerhebung unter diesen Bedingungen fraglich erscheinen. Eine evtl. Revalidierung des TWB sollte deshalb, bei Bestätigung der vorliegenden Beobachtungen im weiteren klinischen Gebrauch in Betracht gezogen werden. Auch der PHQ-D konnte seine in der Literatur beschriebene Eignung zur postoperativen Datenerhebung von psychischen Komorbitäten bei chirurgischen Patienten bis W6 nicht unterstreichen.
Im Gegensatz zu TWB und PHQ-D hat sich der erstmalige Einsatz des XSMFA-D im frühen Nachuntersuchungsintervall bewährt. Es konnten Verbesserungen für Funktion und Beeinträchtigung sechs Wochen postoperativ bereits auf vergleichbarem Niveau wie zu den späteren Nachuntersuchungen ermittelt werden.
Schlussfolgern lässt sich, dass die frühe postoperative Phase eine in der klinischen Bedeutung und postoperativen Ergebnisbeurteilung zunehmend wichtige Zwischenstation darstellt, bei der die bis dort in den Outcome-Kriterien Aktivität, Funktion und Lebensqualität auftretenden signifikanten Verbesserungen auch Rückschlüsse auf die weitere Prognose und Outcome-Entwicklung zulassen. Der in der vorliegenden Arbeit speziell untersuchte laterale OP-Zugang konnte im Gesamtkontext der übergeordneten prospektiven randomisierten Studie die Ergebnisqualität des MIS-Verfahrens sechs Wochen postoperativ nicht erreichen. Die Ergebnisqualität des lateralen Zugangs zur Behandlung der Coxarthrose ist aber anhand der Score-Outcome-Kriterien und den verglichenen Literaturergebnissen bis sechs Wochen postoperativ dennoch als gut zu bewerten. Vorteilhaft und von Bedeutung sind diese Erkenntnisse insbesondere für diejenigen Patienten, welche nicht für das MIS-Verfahren, sondern den lateralen OP-Zugang in Frage kommen.
Nationalparks sind das älteste und bekannteste flächenbezogene Naturschutzinstrument weltweit. Für den Erhalt einer nachhaltigen Lebensgrundlage und die Entwicklung der Biodiversität sowie für mehr Naturdynamik in der Landschaft haben sie eine sehr große Bedeutung, auch in unseren Breiten. Dennoch ist die Einstellung zu Nationalparks von Seiten der unmittelbaren Anwohner nicht immer unproblematisch. Entsprechend versucht die vorliegende wissenschaftliche Analyse neue Erkenntnisse bezüglich der Akzeptanz der Nationalparks Bayerischer Wald und Berchtesgaden, den ältesten Deutschlands, aufzuzeigen. Empirische Grundlagen für diese Studie sind eine bayernweite Online-Befragung, qualitative Experteninterviews und aufwändige repräsentative schriftliche Befragungen in den Nationalpark-Landkreisen Regen und Freyung-Grafenau bzw. Berchtesgadener Land im Jahr 2018. Auch die zeitliche Entwicklung der Akzeptanz wird auf Basis der Ergebnisse von Vorgängerstudien, soweit möglich, berücksichtigt. Dabei sind es ökonomische, emotionale, interpersonelle, soziokulturelle und nicht zuletzt für Geographen besonders interessante raumzeitliche Prädiktoren der Akzeptanz beider Nationalparks, die im Fokus der Untersuchungen stehen.
Patienten mit erhöhten Aldosteronspiegeln zeigen eine gesteigerte Inzidenz für Malignome, insbesondere von Nierenzellkarzinomen. Das Ziel dieser Arbeit war es, die Aldosteron-vermittelte oxidative Nierenschädigung näher zu analysieren sowie die auf Zellebene gezeigte Beeinflussung der antioxidativen Schutzmechanismen im lebenden Organismus nachzuweisen und mögliche therapeutische Ansatzpunkte zu identifizieren. Dazu wurde ein Interventions-versuch über 28 Tage durchgeführt. Neben einer Aldosterongabe wurden folgende Interventionen verwendet: Spironolacton zur Blockade des Mineralkortikoid-Rezeptors (MR), Apocynin als Hemmstoff der NADPH-Oxidasen (Nox), L-NAME zur Blockade der NO-Synthasen (NOS), PDTC, einen Hemmstoff des Transkriptionsfaktors NF-kB sowie Sulforaphan, ein natürlicher Nrf2-Induktor. Eine weitere Gruppe erhielt Sulforaphan ohne additive Aldosterongabe. Die Nierenschäden wurden mittels histopathologischer Schädigungsscores und der Anzahl an DNA-Doppelstrangbrüche analysiert. Die Beeinflussung der antioxidativen Abwehr wurde durch die Aktivierung des Transkriptionsfaktors Nrf2 und durch die Quantifizierung antioxidativer Enzyme bestimmt.
Im Nierengewebe führte Aldosteron zu einer Zunahme von oxidativem Stress. Histologisch zeigte sich ein Anstieg von glomerulären Schäden. Auch kam es zu einer deutlichen Zunahme von Doppelstrangbrüchen der DNA. Des Weiteren konnten wir zeigen, dass Aldosteron auch in vivo zu einer Zunahme der Nrf2-Aktivität führte, wobei sich dies auf Proteinebene nicht in einer (dauerhaften) Synthesesteigerung von antioxidativen Enzymen wiederspiegelte und keinen ausreichenden Schutz des Nierengewebes bot. Für die Interventionsgruppen konnte keine signifikante Auswirkung auf das Vorliegen von oxidativem Stress gezeigt werden. Dies könnte an der Versuchsdauer bzw. an der gewählten Nachweismethode gelegen haben. Nichtsdestotrotz zeigte die Blockade der Nox durch Apocynin bzw. der NOS durch L-NAME eine effektive Reduktion der histologischen und genomischen Schäden. Die L-NAME-Gruppe wies dabei die höchsten Blutdruckwerte auf, diese waren auch zur Aldosterongruppe signifikant gesteigert. Die beobachteten Effekte waren folglich nicht durch den in der Aldosterongruppe erfolgten Blutdruckanstieg, sondern vielmehr durch den Anstieg von oxidativem Stress zu erklären. Ebenfalls blieb die Nrf2-Aktivität bei der Gabe von Apocynin und L-NAME weitgehend auf Kontrollniveau, was dafürspricht, dass der in der Aldosterongruppe messbare Nrf2-Anstieg am ehesten als Reaktion auf chronisch erhöhten oxidativen Stress erfolgte, welcher durch die Interventionen ausblieb. Die Blockade von NF-κB mittels PDTC führte zu vergleichbaren Effekten wie Apocynin und L-NAME. Das deutet darauf hin, dass Aldosteron über die Aktivierung von NF-κB die vermehrte Synthese von pro-oxidativen Enzymen wie Nox und NOS anregt. Die Gabe von Spironolacton hatte den stärksten protektiven Effekt, sowohl auf histologische Veränderungen als auch auf das Entstehen von DNA-Doppelstrangbrüchen, wobei die Nrf2-Aktivität in dieser Gruppe ebenfalls auf Kontrollniveau blieb. Die Aldosteroneffekte wurden folglich über den MR vermittelt. Eine additive Nrf2-Induktion mittels Sulforaphan konnte auch keinen (dauerhaften) Effekt auf die Synthese antioxidativer Enzyme zeigen. Dennoch zeigte diese Gruppe einen ähnlich effektiven Schutz vor den oxidativen Nierenschäden wie die Gabe von Spironolacton. Vieles spricht dafür, dass die Wirkung von Sulforaphan dabei über seine Wirkung als direktes Antioxidans bzw. Radikalfänger und nicht über den Nrf2-Weg zu erklären ist.
Aldosteron führt in der Niere über oxidativen Stress zu glomerulärer Fibrose und DNA-Schäden. Das könnte eine Erklärung für die gesteigerte Inzidenz von Nierenzellkarzinomen in Patienten mit erhöhten Aldosteronspiegeln darstellen. Unsere Ergebnisse sprechen dafür, dass Aldosteron über eine Signalkaskade über den MR zu einer Aktivierung von Nox und NOS führt. Der Aktivierung des Transkriptionsfaktors NF-κB scheint dabei durch die Synthese pro-oxidativer Enzyme eine Art Verstärker-Effekt zuzukommen. Als Reaktion auf den durch Aldosteron gesteigerten oxidativen Stress kommt es zu einer Aktivierung des antioxidativen Transkriptionsfaktors Nrf2, jedoch ohne dass dies zu einem ausreichenden Schutz des Nierengewebes führt. Mögliche therapeutische Ansatzpunkte für einen Schutz vor den durch Aldosteron vermittelten oxidativen Nierenschäden scheinen eher innerhalb der Aldosteronsignalkaskade, insbesondere in der Blockade des MR, als in der antioxidativen Abwehr zu liegen.
Allopolyploid plants are long known to be subject to a homoeolog expression bias of varying degree. The same phenomenon was only much later suspected to occur also in animals based on studies of single selected genes in an allopolyploid vertebrate, the Iberian fish Squalius alburnoides. Consequently, this species became a good model for understanding the evolution of gene expression regulation in polyploid vertebrates. Here, we analyzed for the first time genome-wide allele-specific expression data from diploid and triploid hybrids of S. alburnoides and compared homoeolog expression profiles of adult livers and of juveniles. Co-expression of alleles from both parental genomic types was observed for the majority of genes, but with marked homoeolog expression bias, suggesting homoeolog specific reshaping of expression level patterns in hybrids. Complete silencing of one allele was also observed irrespective of ploidy level, but not transcriptome wide as previously speculated. Instead, it was found only in a restricted number of genes, particularly ones with functions related to mitochondria and ribosomes. This leads us to hypothesize that allelic silencing may be a way to overcome intergenomic gene expression interaction conflicts, and that homoeolog expression bias may be an important mechanism in the achievement of sustainable genomic interactions, mandatory to the success of allopolyploid systems, as in S. alburnoides.
Graft-versus-host disease (GVHD) is a major cause of transplant-related mortality (TRM) after allogeneic haematopoietic stem cell transplantation (HSCT) and presents a challenge in haploidentical HSCT. GVHD may be prevented by ex vivo graft T-cell depletion or in vivo depletion of proliferating lymphocytes. However, both approaches pose significant risks, particularly infections and relapse, compromising survival. A photodepletion strategy to eliminate alloreactive T cells from mismatched donor lymphocyte infusions (enabling administration without immunosuppression), was used to develop ATIR101, an adjunctive therapy for use after haploidentical HSCT. In this phase I dose-finding study, 19 adults (median age: 54 years) with high-risk haematological malignancies were treated with T-cell-depleted human leucocyte antigen-haploidentical myeloablative HSCT followed by ATIR101 at doses of 1 x 10(4)-5 x 10(6) CD3(+) cells/kg (median 31 days post-transplant). No patient received post-transplant immunosuppression or developed grade III/IV acute GVHD, demonstrating the feasibility of ATIR101 infusion for evaluation in two subsequent phase 2 studies. Additionally, we report long-term follow -up of patients treated with ATIR101 in this study. At 1 year, all 9 patients receiving doses of 0 center dot 3-2 x 10(6) CD3(+) cells/kg ATIR101 remained free of serious infections and after more than 8 years, TRM was 0%, relapse-related mortality was 33% and overall survival was 67% in these patients.
We report on 499 patients with severe aplastic anemia aged >= 50 years who underwent hematopoietic cell transplantation (HCT) from HLA-matched sibling (n = 275, 55%) or HLA-matched (8/8) unrelated donors (n =187, 37%) between 2005 and 2016. The median age at HCT was 57.8 years; 16% of patients were 65 to 77 years old. Multivariable analysis confirmed higher mortality risks for patients with performance score less than 90% (hazard ratio HR], 1.41; 95% confidence interval [CI], 1.03 to 1.92; P= .03) and after unrelated donor transplantation (HR, 1.47; 95% CI,1 to 2.16; P = .05). The 3-year probabilities of survival for patients with performance scores of 90 to 100 and less than 90 after HLA-matched sibling transplant were 66% (range, 57% to 75%) and 57% (range, 47% to 76%), respectively. The corresponding probabilities after HLA-matched unrelated donor transplantation were 57% (range, 48% to 67%) and 48% (range, 36% to 59%). Age at transplantation was not associated with survival, but grades II to IV acute graft-versus-host disease (GVHD) risks were higher for patients aged 65 years or older (subdistribution HR [sHR], 1.7; 95% confidence interval, 1.07 to 2.72; P= .026). Chronic GVHD was lower with the GVHD prophylaxis regimens calcineurin inhibitor (CNI) + methotrexate (sHR, .52; 95% CI, .33 to .81; P= .004) and CNI alone or with other agents (sHR, .27; 95% CI, .14 to .53; P < .001) compared with CNI + mycophenolate. Although donor availability is modifiable only to a limited extent, choice of GVHD prophylaxis and selection of patients with good performance scores are key for improved outcomes. (C) 2018 American Society for Blood and Marrow Transplantation. Published by Elsevier Inc. All rights reserved.
Synapse-associated protein 1 (Syap1) is the mammalian homologue of synapse-associated protein of 47 kDa (Sap47) in Drosophila. Genetic deletion of Sap47 leads to deficiencies in short-term plasticity and associative memory processing in flies. In mice, Syap1 is prominently expressed in the nervous system, but its function is still unclear. We have generated Syap1 knockout mice and tested motor behaviour and memory. These mice are viable and fertile but display distinct deficiencies in motor behaviour. Locomotor activity specifically appears to be reduced in early phases when voluntary movement is initiated. On the rotarod, a more demanding motor test involving control by sensory feedback, Syap1-deficient mice dramatically fail to adapt to accelerated speed or to a change in rotation direction. Syap1 is highly expressed in cerebellar Purkinje cells and cerebellar nuclei. Thus, this distinct motor phenotype could be due to a so-far unknown function of Syap1 in cerebellar sensorimotor control. The observed motor defects are highly specific since other tests in the modified SHIRPA exam, as well as cognitive tasks like novel object recognition, Pavlovian fear conditioning, anxiety-like behaviour in open field dark-light transition and elevated plus maze do not appear to be affected in Syap1 knockout mice.
The membrane protein EsaA is a conserved component of the type VIIb secretion system. Limited proteolysis of purified EsaA from Staphylococcus aureus USA300 identified a stable 48 kDa fragment, which was mapped by fingerprint mass spectrometry to an uncharacterized extracellular segment of EsaA. Analysis by circular dichroism spectroscopy showed that this fragment folds into a single stable domain made of mostly α‐helices with a melting point of 34.5°C. Size‐exclusion chromatography combined with multi‐angle light scattering indicated the formation of a dimer of the purified extracellular domain. Octahedral crystals were grown in 0.2 M ammonium citrate tribasic pH 7.0, 16% PEG 3350 using the hanging‐drop vapor‐diffusion method. Diffraction data were analyzed to 4.0 Å resolution, showing that the crystals belonged to the enantiomorphic tetragonal space groups P41212 or P43212, with unit‐cell parameters a = 197.5, b = 197.5, c = 368.3 Å, α = β = γ = 90°.
Background:
Employees insured in pension insurance, who are incapable of working due to ill health, are entitled to a disability pension. To assess whether an individual meets the medical requirements to be considered as disabled, a work capacity evaluation is conducted. However, there are no official guidelines on how to perform an external quality assurance for this evaluation process. Furthermore, the quality of medical reports in the field of insurance medicine can vary substantially, and systematic evaluations are scarce. Reliability studies using peer review have repeatedly shown insufficient ability to distinguish between high, moderate and low quality. Considering literature recommendations, we developed an instrument to examine the quality of medical experts’reports.
Methods:
The peer review manual developed contains six quality domains (formal structure, clarity, transparency, completeness, medical-scientific principles, and efficiency) comprising 22 items. In addition, a superordinate criterion (survey confirmability) rank the overall quality and usefulness of a report. This criterion evaluates problems of innerlogic and reasoning. Development of the manual was assisted by experienced physicians in a pre-test. We examined the observable variance in peer judgements and reliability as the most important outcome criteria. To evaluate inter-rater reliability, 20 anonymous experts’ reports detailing the work capacity evaluation were reviewed by 19 trained raters (peers). Percentage agreement and Kendall’s W, a reliability measure of concordance between two or more peers, were calculated. A total of 325 reviews were conducted.
Results:
Agreement of peer judgements with respect to the superordinate criterion ranged from 29.2 to 87.5%. Kendall’s W for the quality domain items varied greatly, ranging from 0.09 to 0.88. With respect to the superordinate criterion, Kendall’s W was 0.39, which indicates fair agreement. The results of the percentage agreement revealed systemic peer preferences for certain deficit scale categories.
Conclusion:
The superordinate criterion was not sufficiently reliable. However, in comparison to other reliability studies, this criterion showed an equivalent reliability value. This report aims to encourage further efforts to improve evaluation instruments. To reduce disagreement between peer judgments, we propose the revision of the peer review instrumentand the development and implementation of a standardized rater training to improve reliability.
The heterotrimeric protein kinase SNF1 plays a key role in the metabolic adaptation of the pathogenic yeast Candida albicans. It consists of the essential catalytic α-subunit Snf1, the γ-subunit Snf4, and one of the two β-subunits Kis1 and Kis2. Snf4 is required to release the N-terminal catalytic domain of Snf1 from autoinhibition by the C-terminal regulatory domain, and snf4Δ mutants cannot grow on carbon sources other than glucose. In a screen for suppressor mutations that restore growth of a snf4Δ mutant on alternative carbon sources, we isolated a mutant in which six amino acids between the N-terminal kinase domain and the C-terminal regulatory domain of Snf1 were deleted. The deletion was caused by an intragenic recombination event between two 8-bp direct repeats flanking six intervening codons. In contrast to truncated forms of Snf1 that contain only the kinase domain, the Snf4-independent Snf1\(^{Δ311 − 316}\) was fully functional and could replace wild-type Snf1 for normal growth, because it retained the ability to interact with the Kis1 and Kis2 β-subunits via its C-terminal domain. Indeed, the Snf4-independent Snf1\(^{Δ311 − 316}\) still required the β-subunits of the SNF1 complex to perform its functions and did not rescue the growth defects of kis1Δ mutants. Our results demonstrate that a preprogrammed in-frame deletion event within the SNF1 coding region can generate a mutated form of this essential kinase which abolishes autoinhibition and thereby overcomes growth deficiencies caused by a defect in the γ-subunit Snf4.
Maps are the main tool to represent geographical information. Users often zoom in and out to access maps at different scales. Continuous map generalization tries to make the changes between different scales smooth, which is essential to provide users with comfortable zooming experience.
In order to achieve continuous map generalization with high quality, we optimize some important aspects of maps. In this book, we have used optimization in the generalization of land-cover areas, administrative boundaries, buildings, and coastlines. According to our experiments, continuous map generalization indeed benefits from optimization.
A series of seven unusual dimeric naphthylisoquinoline alkaloids was isolated from the leaves of the tropical liana Ancistrocladus ealaensis J. Léonard, named cyclombandakamine A (1), 1-epi-cyclombandakamine A (2), and cyclombandakamines A3–7 (3–7). These alkaloids have a chemically thrilling structural array consisting of a twisted dihydrofuran-cyclohexenone-isochromene system. The 1′″-epimer of 4, cyclombandakamine A1 (8), had previously been discovered in an unidentified Ancistrocladus species related to A. ealaensis. Both lianas produce the potential parent precursor, mbandakamine A (9), but only A. ealaensis synthesizes the corresponding cyclized form, along with a broad series of slightly modified analogs. The challenging isolation required, besides multi-dimensional chromatography, the use of a pentafluorophenyl stationary phase. Featuring up to six stereocenters and two types of chiral axes, their structures were elucidated by means of 1D and 2D NMR, HRESIMS, in combination with oxidative chemical degradation experiments as well as chiroptical (electronic circular dichroism spectroscopy) and quantum chemical calculations. Compared to the ‘open-chain’ parent compound 9, these dimers displayed rather moderate antiplasmodial activities.
Background:
Interferon (IFN) beta drugs have been approved for the treatment of relapsing forms of multiple sclerosis (RMS) for more than 20years and are considered to offer a favourable benefit-risk profile. In July 2014, subcutaneous (SC) peginterferon beta-1a 125g dosed every 2weeks, a pegylated form of interferon beta-1a, was approved by the EMA for the treatment of adult patients with RRMS and in August 2014 by the FDA for RMS. Peginterferon beta-1a shows a prolonged half-life and increased systemic drug exposure resulting in a reduced dosing frequency compared to other available interferon-based products in MS. In the Phase 3 ADVANCE trial peginterferon beta-1a demonstrated significant positive effects on clinical and MRI outcome measures versus placebo after one year. Furthermore, in the ATTAIN extension study, sustained efficacy with long-term treatment for nearly 6years was shown.
Main text
In July 2016, an interdisciplinary panel of German and Austrian experts convened to discuss the management of side effects associated with peginterferon beta-1a and other interferon beta-based treatments in MS in daily practice. The panel was composed of experts from university hospitals and private clinics comprised of neurologists, dermatologists, and an MS nurse. In this paper we report recommendations regarding best practices for adverse event management, focussing on peginterferon beta-1a. Injection site reactions (ISRs) and influenza-like illness are the most common adverse effects of interferon beta therapies and can present a burden for MS patients leading to non-adherence and discontinuation of therapy. Peginterferon beta-1a shows improved pharmacological properties. In clinical trials, the adverse event (AE) profile of peginterferon beta-1a was similar to other interferon beta formulations. The most common AEs were mild to moderate ISRs, influenza-like illness, pyrexia, and headache. Current information on the underlying cause of skin reactions associated with SC interferon treatment, and the management strategies for these AEs are limited. In pivotal trials, ISRs were mainly characterized and classified by neurologists, while dermatologists were only rarely consulted.
Conclusions
This report addresses expert recommendations on the management of most relevant adverse effects related to peginterferon beta-1a and other interferon betas, based on literature and interdisciplinary experience.
Es wurde die Expression der osteogenen Markerproteine Alkalische Phosphatase, Bone Sialoprotein, Kollagen Typ I und Osteopontin von humanen mesenchymalen Stromazellen nach Kultur auf elektrogesponnenen Scaffolds analysiert. Die Scaffolds wurden mittels der Melt electrospinning writing Methode erstellt und unterschieden sich in ihrer Maschenweite. Anhand weiterer Kontrollversuche auf Monolayern wurde ein möglicher Einfluss der Geometrie auf die Proteinexpression untersucht.