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Schriftenreihe
Sonstige beteiligte Institutionen
- Cologne Game Lab (3)
- DFG Forschungsgruppe 2757 / Lokale Selbstregelungen im Kontext schwacher Staatlichkeit in Antike und Moderne (LoSAM) (2)
- Klinikum Fulda (2)
- Open University of the Netherlands (2)
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- Airbus Defence and Space GmbH (1)
- Akademie der Wissenschaften und der Literatur, Mainz (1)
- Apotheke, Universitätsklinikum Würzburg (1)
- Biomedical Center Munich, Department of Physiological Chemistry, Ludwig-Maximilians-Universität München (1)
- Birmingham City University (1)
Salt formation is a routinely used strategy for poorly water-soluble drugs and traditionally performed with small inorganic counterions. High energy crystal lattices as well as effects on the local pH within the aqueous boundary layer during dissolution drive the increased dissolution rate and apparent solubility. Ionic liquids however, by definition low melting ionic salts with often large organic counterions, combine an increased dissolution rate with solubilization of the drug by the counterion itself. Long lasting supersaturation profiles of increased kinetic solubility were reported for several drugs formulated as ionic liquids increasing their overall bioavailability. Furthermore, aggregation and micellization between highly lipophilic compounds and amphiphilic bile acids was described before, demonstrating the capabilities of the human body itself to utilize solubilization of poorly water-soluble compounds. Development of novel counterions not only tailoring the desired physicochemical properties e.g. dissolution rate of the parent drug but adding – in a best-case scenario synergistic – pharmacological activity has been driven forward in the last years. However, salt formation can only be applied for ionizable i.e. acidic or basic compounds. While co-crystals can be used as a nonionized alternative, their formation is not always successful leading to an urgent need for other formulation strategies. In these lines, development of 2D and 3D printing techniques has been ongoing for the last decades and their pharmaceutical application has been demonstrated. The versatile nature and commercial availability allow a decentralized production further elaborating this technique for a highly flexible and patient-oriented supply with medication.
This thesis focuses on the theoretical background and potential application of salt formation in the pharmaceutical development of a drug candidate. The first section presents the current knowledge and state of the art in preparation of low melting ionic liquids i.e. salts and is translated to the in vitro investigation of molecular interaction between the poorly water-soluble drug imatinib and components of the human intestinal fluid in the second section. Development of novel antibiotic counterions and assessment of their potential use in pharmaceutical formulations with fluoroquinolones is described in the last two sections.
Chapter I describes the application of low melting ionic liquids in pharmaceutical formulation and details their development in the last two decades from versatile organic solvents in chemical synthesis towards amorphous strategies for drug delivery. The chapter gives a general overview on molecular structure and physicochemical properties of several drug containing ionic liquids and details the mechanisms which attribute to a typically fast dissolution, increased aqueous solubility as well as enhanced permeation which was reported in several publications.
Chapter II translates the increased aqueous solubility of drugs by an organic counterion to the human gastrointestinal tract with taurocholate and lecithin as main drivers for the solubilization of highly lipophilic and poorly water-soluble drugs. Investigation of the interaction of imatinib – a poorly water-soluble weak base – with fasted- and fed state simulated intestinal fluids revealed a complex interplay between the components of the intestinal fluid and the drug. Mixed vesicles and micelles were observed in concentration dependent aggregation assays and revealed differences in their size, molecular arrangement as well as composition, depending on the tested drug concentration. Overall, the study outlines the effective interaction of weakly basic drugs with taurocholate and lecithin to minimize recrystallization during intestine passage finally leading to favorable supersaturation profiles.
Chapter III focuses on the development of novel antibiotic counterions which potentially move the evolution of ionic liquids from a pharmaceutical salt with tailored physicochemical properties to a synergistic combination of two active pharmaceutical ingredients. The natural occurring anacardic acid derived from the cashew nut shell inspired a series of antibacterial active acidic compounds with increasing alkyl chain length. Their physicochemical properties, antibacterial activity, bacterial biofilm inhibition and cytotoxicity were detailed and in vivo activity in a Galleria mellonella model was assessed. This group of anacardic acid derivatives is synthetically accessible, easily modifiable and yielded two compounds with favorable activity and physicochemical profile for further drug development.
Chapter IV outlines the potential application of anacardic acid derivatives in pharmaceutical formulations by salt formation with fluoroquinolone antibiotics as well as novel techniques such as 2D/3D printing for preparation of drug imprinted products. Despite anacardic acid derivatives demonstrated promising physicochemical properties, salt formation with fluoroquinolone antibiotics was not feasible. However, 2D/3D printed samples with anacardic acid derivative alone or in combination with ciprofloxacin demonstrated physical compatibility between drug and matrix as well as antibacterial activity against three S. aureus strains in an agar diffusion assay. Conclusively, drug printing can be applied for the herein tested compounds, but further process development is necessary.
In summary, preparation of low melting ionic liquids, salts or co-crystals is an appropriate strategy to increase the aqueous solubility of poorly water-soluble drugs and tailor physicochemical properties. The counterion itself solubilizes the drug and furthermore potentially interferes with the complex micellar environment in the human intestine. However, salt formation as routinely used formulation strategy is not feasible in every case and development of alternative techniques is crucial to hurdle challenges related to unfavorable physicochemical properties. The outlined techniques for 2D/3D drug printing provide versatile production of drug products while extending the design space for novel drug development.
Das Nebenschilddrüsenkarzinom ist eine sehr seltene Erkrankung mit einem hohen krankheitsspezifischen Überleben.
Die vorliegende Studie ist mit 83 Patienten die bisher größte multizentrische Studie zu dieser seltenen Tumorerkrankung in Deutschland.
Aufgrund der Seltenheit der Erkrankung finden sich bislang keine prospektiven Studien zum Nebenschilddrüsenkarzinom, sodass sich die bisherigen Handlungs- und Therapieempfehlungen auf retrospektive Studien, Reviews sowie auf Erfahrungen aus Einzelfallberichten beziehen.
Ziel dieser Arbeit war die Evaluation von diagnostischen Mitteln, Krankheitsverlauf und prognostischen Faktoren sowie die Gegenüberstellung der Erfolgsaussichten verschiedener Therapieverfahren des Nebenschilddrüsenkarzinoms.
Veränderung der Ranvier’schen Schnürringarchitektur bei Patienten mit diabetischer Neuropathie
(2021)
In der Krankheitsentstehung der diabetischen Neuropathie wird die paranodale Demyelinisierung als ein möglicher Pathomechanismus diskutiert, wobei Studien mit Gewebeproben von Patienten aufgrund der Invasivität limitiert sind. In der vorliegenden Studie wurden periphere Nervenfasern in Hautbiopsien von Patienten mit diabetischer Neuropathie und in Patienten mit Diabetes mellitus ohne Neuropathie untersucht. Ziel war es, nodale und paranodale Veränderungen, wie eine Dispersion der paranodalen Proteine Caspr und Neurofascin oder der nodalen Na-Kanäle, zu detektieren und die Proben auf verlängerte Ranvier`sche Schnürringe zu untersuchen.
Es wurde die Hypothese überprüft, dass paranodale Demyelinisierungen bei Patienten mit diabetischer Neuropathie in Hautbiopsien, als minimal-invasive Methode, nachweisbar sind. Hautproben von Patienten mit Diabetes mellitus ohne Neuropathie sollten zudem in einem frühen Krankheitsstadium untersucht werden.
Für die Untersuchung konnten 35 Patienten mit einer diabetischen Neuropathie, 17 Patienten mit Diabetes mellitus und 31 Kontrollen eingeschlossen werden. Immunfluoreszenzfärbungen mit Antikörpern gegen Caspr, Neurofascin und Natrium-Kanälen wurden zur Analyse der Ranvier`schen Schnürringarchitektur durchgeführt und ausgewertet.
Eine erhöhte Anzahl an verlängerten Schnürringen, als Zeichen einer segmentalen Demyelinisierung, konnte in den Patienten mit diabetischer Neuropathie aber auch in Patienten mit Diabetes mellitus nachgewiesen werden. Weiterhin waren vermehrt Veränderungen der paranodalen Proteine, wie eine Dispersion von Caspr und Neurofascin in den Proben des Fingers der Patienten mit diabetischer Neuropathie sowie eine Dispersion von Neurofascin im Unterschenkel in beiden Patientengruppen nachweisbar. Interessanterweise waren einzelne Veränderungen auch in den gesunden Kontrollen auffindbar.
Veränderungen der Schnürringarchitektur lassen sich mithilfe der Hautbiopsie nachweisen und quantifizieren. Nodale und paranodale Veränderungen weisen auf demyelinisierende Prozesse in Patienten mit diabetischer Neuropathie hin und finden sich auch bereits in einem frühen Krankheitsstadium.
Fluids in Gravitational Fields – Well-Balanced Modifications for Astrophysical Finite-Volume Codes
(2021)
Stellar structure can -- in good approximation -- be described as a hydrostatic state, which which arises due to a balance between gravitational force and pressure gradient. Hydrostatic states are static solutions of the full compressible Euler system with gravitational source term, which can be used to model the stellar interior. In order to carry out simulations of dynamical processes occurring in stars, it is vital for the numerical method to accurately maintain the hydrostatic state over a long time period. In this thesis we present different methods to modify astrophysical finite volume codes in order to make them \emph{well-balanced}, preventing them from introducing significant discretization errors close to hydrostatic states. Our well-balanced modifications are constructed so that they can meet the requirements for methods applied in the astrophysical context: They can well-balance arbitrary hydrostatic states with any equation of state that is applied to model thermodynamical relations and they are simple to implement in existing astrophysical finite volume codes. One of our well-balanced modifications follows given solutions exactly and can be applied on any grid geometry. The other methods we introduce, which do no require any a priori knowledge, balance local high order approximations of arbitrary hydrostatic states on a Cartesian grid. All of our modifications allow for high order accuracy of the method. The improved accuracy close to hydrostatic states is verified in various numerical experiments.
Stomata sind kleine Poren in der Blattoberfläche, die Pflanzen eine Anpassung ihres Wasserhaushalts an sich ändernde Umweltbedingungen ermöglichen. Die Öffnungsweite der Stomata wird durch den Turgordruck der Schließzellen bestimmt, der wiederum durch Ionenflüsse über die Membranen der Zelle reguliert wird. Ein Netzwerk von Signaltransduktionswegen sorgt dafür, dass Pflanzen die Stomabewegungen an die Umgebungsbedingungen anpassen können. Viele molekulare Komponenten dieser Signaltransduktionketten in Schließzellen von Angiospermen sind inzwischen bekannt und Calcium spielt darin als Signalmolekül eine wichtige Rolle. Weitgehend unbekannt sind dagegen die Mechanismen, die zur Erzeugung von transienten Erhöhungen der Calciumkonzentration führen. Auch die molekularen Grundlagen der Regulierung der Stomaweite in Nicht-Angiospermen-Arten sind bisher nur wenig verstanden. Um zur Aufklärung dieser Fragestellungen
beizutragen, wurden in dieser Arbeit Mechanismen zur Erhöhungen der cytosolischen Calciumkonzentration sowie elektrophysiologische Eigenschaften von Schließzellen untersucht. Der Fokus lag hierbei insbesondere auf der Visualisierung cytosolischer Calciumsignale in Schließzellen. Im ersten Teil der Arbeit wurde durch die Applikation hyperpolarisierender Spannungspulse mittels TEVC (Two Electrode Voltage Clamp) gezielt eine Erhöhung der cytosolischen Calciumkonzentration in einzelnen Schließzellen von Nicotiana tabacum ausgelöst. Um die Dynamik der cytosolischen Calciumkonzentration dabei zeitlich und räumlich hoch aufgelöst zu visualisieren, wurde simultan zu den elektrophysiologischen Messungen ein
Spinning-Disc-System für konfokale Aufnahmen eingesetzt. Während der Applikation
hyperpolarisierender Spannungspulse wurde eine transiente Vergrößerung des cytosolischen Volumens beobachtet. Diese lässt sich durch einen osmotisch getriebenen Wasserfluss erklären, der durch die Veränderung der Ionenkonzentration im Cytosol verursacht wird. Diese wiederum wird durch die spannungsabhängige Aktivierung einwärtsgleichrichtender Kaliumkanäle in der Plasmamembran der Schließzellen und durch den Kompensationsstrom der eingestochenen Mikroelektrode hervorgerufen. Mit Hilfe des calciumsensitiven Farbstoffs Fura-2 konnte gezeigt werden, dass die Erhöhung der freien cytosolischen Calciumkonzentration während der Applikation hyperpolarisierender Spannungspulse durch zwei Mechanismen verursacht wird. Der erste Mechanismus ist die Aktivierung hyperpolarisationsaktivierter, calciumpermeabler Kanäle (HACCs) in der Plasmamembran, die schon 1998 von Grabov & Blatt beschrieben wurde. Zusätzlich zu diesem Mechanismus der Calciumfreisetzung, konnte ein zweiter bislang unbekannter Mechanismus aufgedeckt werden, bei dem Calcium aus intrazellulären Speichern in das Cytosol freigesetzt wird. Dieser Mechanismus hängt mit der oben beschriebenen Vergrößerung des cytosolischen Volumens zusammen und ist wahrscheinlich durch die Änderungen der mechanischen Spannung der Membran bzw. der Osmolarität innerhalb der Zelle bedingt. Diese könnten zu einer Aktivierung mechanosensitiver, calciumpermeabler Kanäle führen.
Der zweite Teil der Arbeit beschäftigt sich mit den molekularen Grundlagen der Regulierung von Stomata in Nicht-Angiospermen. In Schließzellen von Polypodium vulgare konnten durch die Anwendung der TEVC-Technik ähnliche spannungsabhängige Ströme über die Plasmamembran gemessen werden wie in Angiospermen. Ebenso wurden durch die Applikation hyperpolarisierender Spannungspulse an Schließzellen von Polypodium und Asplenium Erhöhungen der cytosolischen Calciumkonzentration ausgelöst, die auf die Existenz spannungsabhängiger, calciumpermeabler Kanäle in der Plasmamembran
hinweisen. Die Diffusion von Fluoreszenzfarbstoffen in die Nachbarschließzellen nach der iontophoretischen Beladung in Polypodium, Asplenium, Ceratopteris und Selaginella zeigte, dass in diesen Arten eine symplastische Verbindung zwischen benachbarten Schließzellen besteht, die an Schließzellen von Angiospermen bisher nicht beobachtet werden konnte. Anhand elektronenmikroskopischer Aufnahmen von Polypodium glycyrrhiza Schließzellen konnte gezeigt werden, dass diese Verbindung wahrscheinlich durch Plasmodesmata zwischen benachbarten Schließzellen gebildet wird. Durch die Analyse der Calciumdynamik in benachbarten Schließzellen nach hyperpolarisierenden Spannungspulsen stellte sich heraus, dass die Calciumhomöostase trotz symplastischer Verbindung in beiden Schließzellen unabhängig voneinander reguliert zu werden scheint. Im Rahmen der Untersuchungen an Farnschließzellen wurde desweiteren eine Methode zur Applikation von ABA etabliert, die es erlaubt mithilfe von Mikroelektroden das Phytohormon iontophoretisch in den Apoplasten zu laden. Im Gegensatz zu den Schließzellen von Nicotiana tabacum, die auf eine so durchgeführte ABA-Applikation mit dem Stomaschluss reagierten, wurde in Polypodium vulgare auf diese Weise kein Stomaschluss ausgelöst. Da die ABA-Antwort der Farnstomata aber auch von anderen Faktoren wie Wachstumsbedingungen abhängig ist (Hõrak et al., 2017), kann eine ABA-Responsivität in dieser Farnart trotzdem nicht vollkommen ausgeschlossen werden.
Die Freisetzung von Calcium aus intrazellulären Speichern, wie sie in dieser Arbeit gezeigt wurde, könnte eine wichtige Rolle bei der Regulierung der Stomaweite spielen. Zur Aufklärung dieser Fragestellung wäre die Identifizierung der Kanäle, die an der osmotisch/mechanisch induzierten Calciumfreisetzung aus internen Speichern beteiligt sind, von großem Interesse. Weiterführende Studien an Schließzellen von Farnen könnten die physiologische Bedeutung der aus Angiospermen bekannten Ionenkanäle für die Stomabewegungen in evolutionär älteren Landpflanzen aufklären und so maßgeblich zum Verständnis der Evolution der Regulierunsgmechanismen von Stomata beitragen. Außerdem stellt sich die Frage, welche Rolle die hier gezeigte symplastische Verbindung der Nachbarschließzellen durch Plasmodesmata für die Funktion der Stomata spielt.
Bei den primär herzgesunden Tieren wurde durch Frequenz-Überstimulation mit Hilfe eines implantierten biventrikulären Herzschrittmachers eine chronische Herzinsuffizienz induziert. Im Rahmen der Verlaufsbeobachtungen wurde in-vivo die Druckanstiegsgeschwindigkeit dP/dtmax, der enddiastolische sowie endsystolische Druck durch einen implantierten Drucksensor gemessen. Anhand der gemessen dP/dtmax-, EDP- und ESP-Werte konnte der Bowditcheffekt dargestellt werden. Mit Ausprägung einer chronischen Herzinsuffizienz fiel dieser im Verlauf deutlich geringer aus, blieb aber stets nachweisbar.
Hintergrund:
Die zeitgerechte Integration des Entlassmanagements ist ein wesentlicher Bestandteil des umfassenden Therapiekonzepts auf Palliativstation. Speziell zur Entlassung in ein stationäres Hospiz sollte die verbleibende Überlebenszeit gegen den Benefit eines stressbehafteten Versorgungswechsels diskutiert werden.
Ziel der Studie:
Aus der Vielzahl der vorhandenen und international validierten palliativmedizinischen Prognosescores wurden für diese Studie die Palliative Performance Scale (PPS) und der Palliative Prognostic Index (PPI) ausgewählt. Ziel war erstens die Überprüfung ihrer Anwendbarkeit auf eine deutsche Palliativpopulation. Zweitens wurden sie neben Symptomen der Terminalphase auf ihre Fähigkeit zur Kurzzeitprognose getestet, um Patienten mit kurzer Überlebenszeit in der stationären Hospizversorgung nach Entlassung identifizieren zu können.
Methodik:
Am Zentrum für Palliativmedizin des Universitätsklinikums Würzburg wurden retrospektiv PPS, PPI, ausgewählte Symptome der Sterbephase sowie die Überlebensdauer bei 112 Patienten erhoben, die von 2012 bis 2016 in ein Hospiz entlassen worden waren. Mittels ANOVA und Kaplan-Meier-Statistik wurden Überlebensdauer und Höhe der Prognosescores in Beziehung gesetzt und Risikogruppen gebildet. Zur Identifizierung von Risikopatienten mit einer Hospizverweildauer ≤ 7 Tagen wurden diese mit der Gruppe der Langverweiler (> 7 Tage) hinsichtlich Höhe der PPS, des PPI und das Vorhandensein von Terminalsymptomen verglichen.
Ergebnisse:
Mittels ANOVA und Kaplan-Meier-Kurven konnte die signifikante Korrelation zwischen Höhe des Prognosescores und der Überlebenszeit für die untersuchte Kohorte belegt werden. Risikopatienten mit einer Hospizverweildauer ≤ 7 Tagen wiesen einen signifikant niedrigeren PPS (40 % vs. 50 %) respektive einen höheren PPI-Wert (6,5 vs. 4,5 P.) als die Langverweiler auf. Die Terminalsymptome Dysphagie und eine reduzierte orale Nahrungsaufnahme waren unter Risikopatienten häufiger vertreten.
Schlussfolgerung:
Die Prognosefähigkeit der palliativmedizinischen Prognosescores PPS und PPI konnte für die untersuchte Kohorte belegt werden. Eine Kurzzeitprognose erwies sich allerdings aufgrund der geringen Trennschärfe der Cut-Off-Werte als praxisuntauglich. Sie können dennoch in speziellen Fällen als Orientierungshilfe im Entlassmanagement dienen.
In recent years <mi>PI</mi>-conjugated organoboron polymers and BN-doped polycyclic aromatic hydrocarbons have attracted a lot of interest due to their great potential in organic electronics. However, there are only few known examples of conjugated polymers with BN units in their main chain. Within this work silazane cleavage with silicon-boron (Si/B) exchange for the synthesis of a novel class of inorganic-organic hybrid polymers is demonstrated. These polymers consist of alternating NBN and para-phenylene units in the main chain. Photophysical studies and TD-DFT calculations for the polymer and molecular model systems were carried out, revealing a low extent of <mi>PI</mi>-conjugation across the NBN units. The new polymers can be used as macromolecular polyligands by a cross-linking reaction with a ZrIV compound. In the next chapter the synthesis and characterization of the first poly(p-phenylene iminoborane) is presented. This novel inorganic–organic hybrid polymer can be described as a BN analogue of the well-known poly(p-phenylene vinylene) (PPV) and is also accessible using the previously described Si/B exchange as synthetic strategy. Photophysical investigations and TD-DFT calculations on the polymer and corresponding model oligomers provide clear evidence for <mi>PI</mi>-conjugation across the B=N units and extension of the conjugation path with increasing chain length. Furthermore, a possible application of Si/B exchange for the synthesis of polysulfoximines was explored. Herein, diaryl sulfoximines and a p-phenylene bisborane serve as building blocks for new BN- and BO-doped alternating inorganic–organic hybrid copolymers. While the BN-linked polymers were accessible by a facile silicon/boron exchange protocol, the synthesis of polymers with B–O linkages in the main chain is achieved by salt elimination. In the last chapter the concept of Si/B exchange was investigated for the synthesis of BP-linked oligomers. Herein oligomers with sterically less demanding substituents (substituents: 2,4,6-trimethylphenyl or 2,4,6-tri-iso-propylphenyl) at the phosphorus are accessible using Si/B exchange, but the oligomer with Mes* (2,4,6-tri-tert-butylphenyl) as substituent needed a salt elimination pathway to give the desired product. Experimental data and theoretical investigations indicate, that the P-substituent has a high influence on the geometry of the phosphorus center and therefore on the possible conjugation over the BP units.
Das Ziel der vorliegenden Arbeit war die retrospektive Analyse von Patienten mit einer mykobakteriellen Hautinfektion, die sich an der Klinik und Poliklinik für Dermatologie, Venerologie und Allergologie des Universitätsklinikums Würzburg oder in der Fachabteilung für Tropenmedizin der Missioklinik Würzburg in dem Zeitraum zwischen 1998 und 2018 vorgestellt haben. Es wurden verschiedene Aspekte wie die Anamnese, der mutmaßliche Infektionsweg, klinische und diagnostische Daten sowie die durchgeführte Therapie untersucht. Es konnten insgesamt 32 Fälle erfasst werden, die in 4 erregerspezifische Gruppen unterteilt wurden. Die Gruppe der Mycobacterium (M.) marinum-Infektionen war mit 18 Fällen am größten, gefolgt von 9 Infektionen mit weiteren nichttuberkulösen Mykobakterien (NTM; M. chelonae, M. avium, M. fortuitum, M. wolinskyi/ mageritense sowie M. haemophilum), 3 Fällen mit dem Erreger M. leprae sowie 2 kutanen M. tuberculosis-Infektionen. Der Anteil immunsupprimierter Patienten mit einer M. marinum-Infektion lag bei 22 %. In unserer Untersuchung stellte der Umgang mit Zierfischaquarien den größten Risikofaktor für eine Infektion mit M. marinum dar. Wie unsere Studie weiterhin zeigte, sollte auch bei knotigen Hautveränderungen in für kutane Mykobakteriosen untypischen Körperarealen, wie z.B. dem Gesicht, eine solche Infektion differentialdiagnostisch erwogen werden. Der kulturelle Nachweis misslang lediglich bei 2 Patienten mit einer M. marinum-Infektion. Die Diagnose konnte in diesen beiden Fällen anhand einer charakteristischen Anamnese, Klinik und Histopathologie gestellt werden. In der vorliegenden Untersuchung erfolgte die Therapie bei allen Patienten mittels einer Antibiose. In der M. marinum-Gruppe erwies sich insbesondere der Wirkstoff Clarithromycin als effektiv. Unter der Gabe von Doxycyclin kam es dagegen in 80 % der Fälle zu einer Therapieumstellung. In beiden Gruppen nichttuberkulöser Mykobakteriosen konnten die Monotherapien im Durchschnitt früher erfolgreich beendet werden als die Kombinationstherapien. Letztere kamen allerdings zum Einsatz bei einer zugrundeliegenden Immunsuppression bzw. bei einem ausgedehnten Hautbefund.
Bacterial small non-coding RNAs (sRNAs) play fundamental roles in controlling and finetuning gene expression in a wide variety of cellular processes, including stress responses, environmental signaling and virulence in pathogens. Despite the identification of hundreds of sRNA candidates in diverse bacteria by genomics approaches, the mechanisms and regulatory capabilities of these posttranscriptional regulators have most intensively been studied in Gram-negative Gammaproteobacteria such as Escherichia coli and Salmonella. So far, almost nothing is known about sRNA-mediated regulation (riboregulation) in Epsilonproteobacteria, including the major human pathogen Helicobacter pylori. H. pylori was even thought to be deficient for riboregulation as none of the sRNAs known from enterobacteria are conserved in Helicobacter and since it lacks the major RNA chaperone Hfq, which is crucial for sRNA function as well as stability in many bacteria. Nonetheless, more than 60 cis- and trans-acting sRNA candidates were recently identified in H. pylori by a global RNA sequencing approach, indicating that this pathogen, in principle, has the capability to use riboregulation for its gene expression control. However, the functions and underlying mechanisms of H. pylori sRNAs remained unclear.
This thesis focused on the first functional characterization and target gene identification of a trans-acting sRNA, RepG (Regulator of polymeric G-repeats), in H. pylori. Using in-vitro and in-vivo approaches, RepG was shown to directly base-pair with its C/Urich terminator loop to a variable homopolymeric G-repeat in the 5’ untranslated region (UTR) of the tlpB mRNA, thereby regulating expression of the chemotaxis receptor TlpB. While the RepG sRNA is highly conserved, the length of the G-repeat in the tlpB mRNA leader varies among different H. pylori isolates, resulting in a strain-specific tlpB regulation. The modification of the number of guanines within the G-stretch in H. pylori strain 26695 demonstrated that the length of the homopolymeric G-repeat determines the outcome of posttranscriptional control (repression or activation) of tlpB by RepG. This lengthdependent targeting of a simple sequence repeat by a trans-acting sRNA represents a new twist in sRNA-mediated regulation and a novel mechanism of gene expression control, since it uniquely links phase variation by simple sequence repeats to posttranscriptional regulation.
In almost all sequenced H. pylori strains, tlpB is encoded in a two gene operon upstream of HP0102, a gene of previously unknown function. This study provided evidence that HP0102 encodes a glycosyltransferase involved in LPS O-chain and Lewis x antigen production. Accordingly, this glycosyltransferase was shown to be essential for mice colonization by H. pylori. The coordinated posttranscriptional regulation of the tlpB-HP0102 operon by antisense base-pairing of RepG to the phase-variable G-repeat in the 5’ UTR of the tlpB mRNA allows for a gradual, rather than ON/OFF, control of HP0102 expression, thereby affecting LPS biosynthesis in H. pylori. This fine-tuning of O-chain and Lewis x antigen expression modulates H. pylori antibiotics sensitivity and thus, might be advantageous for Helicobacter colonization and persistence.
Whole transcriptome analysis based on microarray and RNA sequencing was used to identify additional RepG target mRNAs and uncover the physiological role of this riboregulator in H. pylori. Altogether, repG deletion affected expression of more than 40 target gene candidates involved various cellular processes, including membrane transport and adhesion, LPS modification, amino acid metabolism, oxidative and nitrosative stress, and nucleic acid modification. The presence of homopolymeric G-repeats/G-rich sequences in almost all target mRNA candidates indicated that RepG hijacks a conserved motif to
recognize and regulate multiple target mRNAs in H. pylori.
Overall, this study demonstrates that H. pylori employs riboregulation in stress response and virulence control. In addition, this thesis has successfully established Helicobacter as a new model organism for investigating general concepts of gene expression control by Hfq-independent sRNAs and sRNAs in bacterial pathogens.