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Institute
- Graduate School of Life Sciences (103)
- Theodor-Boveri-Institut für Biowissenschaften (82)
- Institut für Informatik (46)
- Institut für Psychologie (43)
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Schriftenreihe
Sonstige beteiligte Institutionen
- Helmholtz Institute for RNA-based Infection Research (HIRI) (2)
- Interdisziplinäres Zentrum für Klinische Forschung (IZKF) (2)
- Klinische Studienzentrale (Universitätsklinikum) (2)
- Rudolf Virchow Center for Integrative and Translational Bioimaging, University of Würzburg (2)
- Anthropology Department University of Tennessee, Knoxville (1)
- CIBSS Centre for Integrative Biological Signalling Studies, University of Freiburg (1)
- Carl-Ludwig-Institut für Physiologie, Universität Leipzig (1)
- Chair of Experimental Biomedicine I (1)
- Charles University, Faculty of Mathematics and Physics, Ke Karlovu 5, 121 16 Prague, Czech Republic (1)
- DATE Lab, KITE Research Insititute, University Health Network, Toronto, Canada (1)
The development of ligands capable of effectively stabilizing highly reactive main‐group species has led to the experimental realization of a variety of systems with fascinating properties. In this work, we computationally investigate the electronic, structural, energetic, and bonding features of proximity‐enforced group 13–15 homodimers stabilized by a rigid expanded pincer ligand based on the 1,8‐naphthyridine (napy) core. We show that the redox‐active naphthyridine diimine (NDI) ligand enables a wide variety of structural motifs and element‐element interaction modes, the latter ranging from isolated, element‐centered lone pairs (e.g., E = Si, Ge) to cases where through‐space π bonds (E = Pb), element‐element multiple bonds (E = P, As) and biradical ground states (E = N) are observed. Our results hint at the feasibility of NDI‐E2 species as viable synthetic targets, highlighting the versatility and potential applications of napy‐based ligands in main‐group chemistry.
Influence of Carbon Additives on the Electrochemical Performance of Modern Lead-Acid Batteries
(2023)
In the first part of this thesis, a validation of both short-term and long-term DCA tests on 2 V laboratory cells is focussed. The aim is to improve the laboratory cell level measurement technology for dynamic charge acceptance regarding the investigation of carbon additives. To address this issue, it is crucial to apply carbon additives generating a remarkable difference in charge acceptance. For this purpose, five different carbon additives providing a variation in the specific external surface were included as additives in the negative plates of 2 V lead-acid cells. Both short-term (charge acceptance test 2 from SBA and DCA from EN) and long-term (Run-in DCA from Ford) DCA tests were executed on the lead-acid cells. Further understanding of the mechanism was studied by applying electrochemical methods like cyclic voltammetry and electrochemical impedance spectroscopy.
The second part of this thesis aims to understand the impact of carbon surface functional groups on the electrochemical activity of the negative electrodes as well as the DCA of 2 V lead-acid cells. In order to address this topic, commercially available activated carbon was modified by different chemical treatments to incorporate specific surface functional groups in the carbon structure. A series of activated carbons having a broad range of pH was prepared, which were used as additives in the negative electrodes. The corresponding lead-acid cells were subjected to cyclic voltammetry and DCA test according to EN. Further, the physical and chemical properties of the functionalized carbon additives were intensively analyzed to establish a structure-property relationship with a focus on DCA.
A plethora of novel material concepts are currently being investigated in the condensed matter research community. Some of them hold promise to shape our everyday world in a way that silicon-based semiconductor materials and the related development of semiconductor devices have done in the past. In this regard, the last decades have witnessed an explosion of studies concerned with so called ‘’quantum materials’’ with emerging novel functionalities. These could eventually lead to new generations of electronic and/or spintronic devices. One particular material class, the so called topological materials, play a central role. As far as their technological applicability is concerned, however, they are still facing outstanding challenges to date.
Predicted for the first time in 2005 and experimentally verified in 2007, two-dimensional topological insulators (2D TIs) (a.k.a. quantum spin Hall insulators) exhibit the outstanding property of hosting spin-polarized metallic states along the boundaries of the insulating 2D bulk material, which are protected from elastic single-particle backscattering and give rise to the quantum spin Hall effect (QSHE). Owing to these peculiar properties the QSHE holds promise for dissipationless charge and/or spin transport. However, also in today’s best 2D TIs the observation of the QSHE is still limited to cryogenic temperatures of maximum 100 K. Here, the discovery of bismuthene on SiC(0001) has marked a milestone towards a possible realization of the QSHE at or beyond room-temperature owing to the massively increased electronic bulk energy gap on the order of 1 eV. This thesis is devoted to and motivated by the goal of advancing its synthesis and to build a deeper understanding of its one-particle and two-particle electronic properties that goes beyond prior work.
Regarding the aspect of material synthesis, an improved growth procedure for bismuthene is elaborated that increases the domain size of the material considerably (by a factor of ≈ 3.2 - 6.5 compared to prior work). The improved film quality is an important step towards any future device application of bismuthene, but also facilitates all further basic studies of this material.
Moreover, the deposition of magnetic transition metals (Mn and Co) on bismuthene is investigated. Thereby, the formation of ordered magnetic Bi-Mn/Co alloys is realized, their structure is resolved with scanning tunneling microscopy (STM), and their pristine electronic properties are resolved with scanning tunneling spectroscopy (STS) and photoemission spectroscopy (PES). It is proposed that these ordered magnetic Bi-Mn/Co-alloys offer the potential to study the interplay between magnetism and topology in bismuthene in the future.
In this thesis, a wide variety of spectroscopic techniques are employed that aim to build an understanding of the single-particle, as well as two-particle level of description of bismuthene's electronic structure. The techniques involve STS and angle-resolved PES (ARPES) on the one hand, but also optical spectroscopy and time-resolved ARPES (trARPES), on the other hand. Moreover, these experiments are accompanied by advanced numerical modelling in form of GW and Bethe-Salpeter equation calculations provided by our theoretical colleagues. Notably, by merging many experimental and theoretical techniques, this work sets a benchmark for electronic structure investigations of 2D materials in general.
Based on the STS studies, electronic quasi-particle interferences in quasi-1D line defects in bismuthene that are reminiscent of Fabry-Pérot states are discovered. It is shown that they point to a hybridization of two pairs of helical boundary modes across the line defect, which is accompanied by a (partial) lifting of their topological protection against elastic single-particle backscattering.
Optical spectroscopy is used to reveal bismuthene's two-particle elecronic structure. Despite its monolayer thickness, a strong optical (two-particle) response due to enhanced electron-hole Coulomb interactions is observed. The presented combined experimental and theoretical approach (including GW and Bethe-Salpeter equation calculations) allows to conclude that two prominent optical transitions can be associated with excitonic transitions derived from the Rashba-split valence bands of bismuthene. On a broader scope this discovery might promote further experiments to elucidate links of excitonic and topological physics.
Finally, the excited conduction band states of bismuthene are mapped in energy and momentum space employing trARPES on bismuthene for the first time. The direct and indirect band gaps are succesfully extracted and the effect of excited charge carrier induced gap-renormalization is observed. In addition, an exceptionally fast excited charge carrier relaxation is identified which is explained by the presence of a quasi-metallic density of states from coupled topological boundary states of domain boundaries.
Cellular growth and proliferation are among the most important processes for cells and
organisms. One of the major determinants of these processes is the amount of proteins
and consequently also the amount of ribosomes. Their synthesis involves several hundred
proteins and four different ribosomal RNA species, is highly coordinated and very
energy-demanding. However, the molecular mechanims of transcriptional regulation of
the protein-coding genes involved, is only poorly understood in mammals.
In this thesis, unbiased genome-wide knockout reporter screens were performed, aiming
to identify previously unknown transcriptional regulators of ribosome biogenesis
factors (RiBis), which are important for the assembly and maturation of ribosomes,
and ribosomal proteins (RPs), which are ribosomal components themself. With that
approach and follow-up (validation) experiments, ALDOA and RBM8A among others,
could be identified as regulators of ribosome biogenesis.
Depletion of the glycolytic enzyme ALDOA led to a downregulation of RiBi- and RPpromoter
driven reporters on protein and transcript level, as well as to a downregulation
of ribosome biogenesis gene transcripts and of mRNAs of other genes important for
proliferation.
Reducing the amount of the exon junction complex protein RBM8A, led to a more prominent
downregulation of one of the fluorescent reporters, but this regulation was independent
of the promoter driving the expression of the reporter. However, acute protein
depletion experiments in combination with nascent RNA sequencing (4sU-Seq)
revealed, that mainly cytosolic ribosomal proteins (CRPs) were downregulated upon
acute RBM8A withdrawal. ChIP experiments showed RBM8A binding to promoters of
RP genes, but also to other chromatin regions. Total POL II or elongating and initiating
POL II levels were not altered upon acute RBM8A depletion.
These data provide a starting point for further research on the mechanisms of transcriptional
regulation of RP and RiBi genes in mammals.
Despite sometimes strong codependencies of insect herbivores and plants, the responses of individual taxa to accelerating climate change are typically studied in isolation. For this reason, biotic interactions that potentially limit species in tracking their preferred climatic niches are ignored. Here, we chose butterflies as a prominent representative of herbivorous insects to investigate the impacts of temperature changes and their larval host plant distributions along a 1.4‐km elevational gradient in the German Alps. Following a sampling protocol of 2009, we revisited 33 grassland plots in 2019 over an entire growing season. We quantified changes in butterfly abundance and richness by repeated transect walks on each plot and disentangled the direct and indirect effects of locally assessed temperature, site management, and larval and adult food resource availability on these patterns. Additionally, we determined elevational range shifts of butterflies and host plants at both the community and species level. Comparing the two sampled years (2009 and 2019), we found a severe decline in butterfly abundance and a clear upward shift of butterflies along the elevational gradient. We detected shifts in the peak of species richness, community composition, and at the species level, whereby mountainous species shifted particularly strongly. In contrast, host plants showed barely any change, neither in connection with species richness nor individual species shifts. Further, temperature and host plant richness were the main drivers of butterfly richness, with change in temperature best explaining the change in richness over time. We concluded that host plants were not yet hindering butterfly species and communities from shifting upwards. However, the mismatch between butterfly and host plant shifts might become a problem for this very close plant–herbivore relationship, especially toward higher elevations, if butterflies fail to adapt to new host plants. Further, our results support the value of conserving traditional extensive pasture use as a promoter of host plant and, hence, butterfly richness.
This work in the field of digital literary stylistics and computational literary studies is concerned with theoretical concerns of literary genre, with the design of a corpus of nineteenth-century Spanish-American novels, and with its empirical analysis in terms of subgenres of the novel. The digital text corpus consists of 256 Argentine, Cuban, and Mexican novels from the period between 1830 and 1910. It has been created with the goal to analyze thematic subgenres and literary currents that were represented in numerous novels in the nineteenth century by means of computational text categorization methods. The texts have been gathered from different sources, encoded in the standard of the Text Encoding Initiative (TEI), and enriched with detailed bibliographic and subgenre-related metadata, as well as with structural information.
To categorize the texts, statistical classification and a family resemblance analysis relying on network analysis are used with the aim to examine how the subgenres, which are understood as communicative, conventional phenomena, can be captured on the stylistic, textual level of the novels that participate in them. The result is that both thematic subgenres and literary currents are textually coherent to degrees of 70–90 %, depending on the individual subgenre constellation, meaning that the communicatively established subgenre classifications can be accurately captured to this extent in terms of textually defined classes.
Besides the empirical focus, the dissertation also aims to relate literary theoretical genre concepts to the ones used in digital genre stylistics and computational literary studies as subfields of digital humanities. It is argued that literary text types, conventional literary genres, and textual literary genres should be distinguished on a theoretical level to improve the conceptualization of genre for digital text analysis.
Depressive disorders represent one of the main sources for the loss of healthy years of life. One of the reasons for this circumstance is the recurrent course of these disorders, which can be interrupted by current therapeutic approaches, especially in the shortterm, but seem to be maintained at least in part in the long-term. Subsequently, on one hand, this thesis deals with methodological measurement issues in the longitudinal prediction of depressive courses. On the other hand, it addresses two currently discussed neuroscience-based treatment approaches, which are investigated experimentally in a basic-psychological manner and reviewed in the light of their potential to translate results to the application in patient care. These two approaches each address potential mechanisms that may negatively impact long-term disease trajectories: First, stable endophenotypes for vulnerability factors that could regain control over the organism and reactivate maladaptive experiences, or behaviors with increasing temporal distance from therapeutic methods are focused on. In the studies presented, these were influenced by a recently rediscovered method of neuromodulation (transcranial low-intensity focused ultrasound) which is discussed in light of its unique capability to address even deepest, subcortical regions at a high spatial resolution. Lastly, as a second approach, an experimental design for the use of reconsolidation interference is presented, which could provide a first insight into the applicability of corresponding protocols in the field of depressive disorders and thus contribute to the modification, instead of inhibition, of already mentioned endophenotypes. In sum, methodological considerations for monitoring and predicting long-term courses of depression are deducted before two approaches are discussed that could potentially exert positive influences on the recurrent nature of depressive symptoms on their own, in combination with each other, or as augmentation for existing therapeutic procedures.
Ubiquitylation is a protein post translational modification, in which ubiquitin is covalently attached to target protein substrates resulting in diverse cellular outcomes. Besides ubiquitin, various ubiquitin-like proteins including FAT10 exist, which are also conjugated to target proteins. The underlying modification mechanisms are conserved. In the initial step, ubiquitin or a ubiquitin-like protein is thioester-linked to a catalytic cysteine in the E1activating enzyme in an ATP-dependent manner. The respective protein modifier is then transferred to an E2 conjugating enzyme in a transthioesterification reaction. Finally, an E3 ubiquitin ligase E3 catalyzes the covalent attachment of the protein modifier to a substrate. In the case of ubiquitin, multiple ubiquitin molecules can be attached to a substrate in the form of either linear or branched polyubiquitin chains but also as single ubiquitin modifications. Depending on the nature of the ubiquitin chain, the substrates are destined to various cellular processes such as their targeted destruction by the proteasome but also non-degradative outcomes may occur.
As stated above FAT10 is a ubiquitin-like protein modifier which typically targets proteins for proteasomal degradation. It consists of two ubiquitin-like domains and is mainly expressed in cells of the human immune system. The reported involvement of FAT10 modifications in cancers and other diseases has caught the attention of the scientific community as an inhibition of the FAT10ylation process may provide avenues for novel therapeutic approaches. UBA6 is the E1 activating enzyme that resides at the apex of the FAT10 proteasomal degradation pathway. UBA6 not only recognizes FAT10 but can also activate ubiquitin as efficiently as the ubiquitin specific E1 UBA1. The dual specificity of UBA6 may complicate the inhibition FAT10ylation since targeting the active site of UBA6 will also inhibit the UBA6-catalyzed ubiquitin activation. Therefore, it is important to understand the underlying principles for the dual specificity of UBA6 prior to the development of compounds interfering with FAT10ylation.
In this thesis important novel insights into the structure and function of UBA6 were derived by X-ray crystallography and biochemical methods. The first crystal structure of UBA6 reveals the multidomain architecture of this enzyme in atomic detail. The enzyme is composed of a rigid core including its active and inactive adenylation domains as well as a 4 helix bundle. Overall, the molecule adopts a “Y” shape architecture with the core at the base and the first and second catalytic half domains forming one arm of the “Y” and the ubiquitin fold domain constituting the other arm. While UBA6 shares the same domain architecture as UBA1, substantial differences were revealed by the crystal structure. In particular, the first catalytic half domain undergoes a significant shift to a position more distal from the core. This rigid body movement is assumed to generate room to accommodate the second ubiquitin-like domain of FAT10. Differences are also observed in a hydrophobic platform between the core and the first catalytic half domain and the adenylation active site in the core, which together from the binding sites for ubiquitin and FAT10. Site directed mutagenesis of key residues in these areas altered the UBA6-catalyzed activation of ubiquitin and FAT10. UBA6 variants were generated with the goal of trying to block the activation of FAT10 while still maintaining that of ubiquitin activation, in order to fully explain the dual specificity of UBA6. However, none of these mutations could block the activation of FAT10, while some of these UBA6 variants blocked ubiquitin activation. Preliminary inhibition assays with a group of E1 inhibitors belonging to the adenosyl sulfamate family demonstrated potent inhibition of FAT10ylation for two compounds. The dual specificity of UBA6 hence needs to be further examined by biochemical and structural methods. In particular, the structure of a complex between UBA6 and ubiquitin or FAT10 would provide key insights for further biochemical studies, ultimately allowing the targeted inhibition of the FAT10ylation machinery.
A cyclic alkyl(amino)carbene (CAAC)‐stabilized dicoordinate aminoborylene is synthesized by the twofold reduction of a [(CAAC)BCl\(_{2}\)(TMP)] (TMP=2,6‐tetramethylpiperidyl) precursor. NMR‐spectroscopic, X‐ray crystallographic and computational analyses confirm the cumulenic nature of the central C=B=N moiety. Irradiation of [(CAAC)B(TMP)] (2) resulted in an intramolecular C−C bond activation, leading to a doubly‐fused C\(_{10}\)BN heterocycle, while the reaction with acetonitrile resulted in an aryl migration from the CAAC to the acetonitrile nitrogen atom, concomitant with tautomerization of the latter to a boron‐bound allylamino ligand. One‐electron oxidation of 2 with CuX (X=Cl, Br) afforded the corresponding amino(halo)boryl radicals, which were characterized by EPR spectroscopy and DFT calculations. Placing 2 under an atmosphere of CO afforded the tricoordinate (CAAC,CO)‐stabilized aminoborylene. Finally, the twofold oxidation of 2 with chalcogens led, in the case of N\(_{2}\)O and sulfur, to the splitting of the B−C\(_{CAAC}\) bond and formation of the 2,4‐diamino‐1,3,2,4‐dichalcogenadiboretanes and CAAC‐chalcogen adducts, whereas with selenium a monomeric boraselenone was isolated, which showed some degree of B−Se multiple bonding.