Refine
Has Fulltext
- yes (17)
Is part of the Bibliography
- yes (17)
Document Type
- Journal article (16)
- Report (1)
Language
- English (17) (remove)
Keywords
- remote sensing (6)
- movement ecology (4)
- schistosomiasis (3)
- Google Earth Engine (2)
- Landsat (2)
- conservation (2)
- Anas crecca (1)
- Animal Tracking (1)
- BETA-Diversität (1)
- BETA-Multifunktionalität (1)
Institute
Sonstige beteiligte Institutionen
Visualizing movement data is challenging: While traditional spatial data can be sufficiently displayed as two‐dimensional plots or maps, movement trajectories require the representation of time in a third dimension. To address this, we present moveVis, an R package, which provides tools to animate movement trajectories, overlaying simultaneous uni‐ or multi‐temporal raster imagery or vector data.
moveVis automates the processing of movement and environmental data to turn such into an animation. This includes (a) the regularization of movement trajectories enforcing uniform time instances and intervals across all trajectories, (b) the frame‐wise mapping of movement trajectories onto temporally static or dynamic environmental layers, (c) the addition of customizations, for example, map elements or colour scales and (d) the rendering of frames into an animation encoded as GIF or video file.
moveVis is designed to display interactions and concurrencies of animal movement and environmental data. We present examples and use cases, ranging from data exploration to visualizing scientific findings.
Static spatial plots of movement data disregard the temporal dimension that distinguishes movement from other spatial data. In contrast, animations allow to display relocation in both time and space. We deem animations a powerful way to visually explore movement data, frame analytical findings and display potential interactions with spatially continuous and temporally dynamic environmental covariates.
The monitoring of land cover and land use change is critical for assessing the provision of ecosystem services. One of the sources for long-term land cover change quantification is through the classification of historical and/or current maps. Little research has been done on historical maps using Object-Based Image Analysis (OBIA). This study applied an object-based classification using eCognition tool for analyzing the land cover based on historical maps in the Main river catchment, Upper Franconia, Germany. This allowed land use change analysis between the 1850s and 2015, a time span which covers the phase of industrialization of landscapes in central Europe. The results show a strong increase in urban area by 2600%, a severe loss of cropland (−24%), a moderate reduction in meadows (−4%), and a small gain in forests (+4%). The method proved useful for the application on historical maps due to the ability of the software to create semantic objects. The confusion matrix shows an overall accuracy of 82% for the automatic classification compared to manual reclassification considering all 17 sample tiles. The minimum overall accuracy was 65% for historical maps of poor quality and the maximum was 91% for very high-quality ones. Although accuracy is between high and moderate, coarse land cover patterns in the past and trends in land cover change can be analyzed. We conclude that such long-term analysis of land cover is a prerequisite for quantifying long-term changes in ecosystem services.
Most animals live in seasonal environments and experience very different conditions throughout the year. Behavioral strategies like migration, hibernation, and a life cycle adapted to the local seasonality help to cope with fluctuations in environmental conditions. Thus, how an individual utilizes the environment depends both on the current availability of habitat and the behavioral prerequisites of the individual at that time. While the increasing availability and richness of animal movement data has facilitated the development of algorithms that classify behavior by movement geometry, changes in the environmental correlates of animal movement have so far not been exploited for a behavioral annotation. Here, we suggest a method that uses these changes in individual–environment associations to divide animal location data into segments of higher ecological coherence, which we term niche segmentation. We use time series of random forest models to evaluate the transferability of habitat use over time to cluster observational data accordingly. We show that our method is able to identify relevant changes in habitat use corresponding to both changes in the availability of habitat and how it was used using simulated data, and apply our method to a tracking data set of common teal (Anas crecca). The niche segmentation proved to be robust, and segmented habitat suitability outperformed models neglecting the temporal dynamics of habitat use. Overall, we show that it is possible to classify animal trajectories based on changes of habitat use similar to geometric segmentation algorithms. We conclude that such an environmentally informed classification of animal trajectories can provide new insights into an individuals' behavior and enables us to make sensible predictions of how suitable areas might be connected by movement in space and time.
Background:
Schistosomiasis is a water-based disease that affects an estimated 250 million people, mainly in sub-Saharan Africa. The transmission of schistosomiasis is spatially and temporally restricted to freshwater bodies that contain schistosome cercariae released from specific snails that act as intermediate hosts. Our objective was to assess the contribution of remote sensing applications and to identify remaining challenges in its optimal application for schistosomiasis risk profiling in order to support public health authorities to better target control interventions.
Methods:
We reviewed the literature (i) to deepen our understanding of the ecology and the epidemiology of schistosomiasis, placing particular emphasis on remote sensing; and (ii) to fill an identified gap, namely interdisciplinary research that bridges different strands of scientific inquiry to enhance spatially explicit risk profiling. As a first step, we reviewed key factors that govern schistosomiasis risk. Secondly, we examined remote sensing data and variables that have been used for risk profiling of schistosomiasis. Thirdly, the linkage between the ecological consequence of environmental conditions and the respective measure of remote sensing data were synthesised.
Results:
We found that the potential of remote sensing data for spatial risk profiling of schistosomiasis is - in principle - far greater than explored thus far. Importantly though, the application of remote sensing data requires a tailored approach that must be optimised by selecting specific remote sensing variables, considering the appropriate scale of observation and modelling within ecozones. Interestingly, prior studies that linked prevalence of Schistosoma infection to remotely sensed data did not reflect that there is a spatial gap between the parasite and intermediate host snail habitats where disease transmission occurs, and the location (community or school) where prevalence measures are usually derived from.
Conclusions:
Our findings imply that the potential of remote sensing data for risk profiling of schistosomiasis and other neglected tropical diseases has yet to be fully exploited.
Background
Schistosomiasis is the most widespread water-based disease in sub-Saharan Africa. Transmission is governed by the spatial distribution of specific freshwater snails that act as intermediate hosts and human water contact patterns. Remote sensing data have been utilized for spatially explicit risk profiling of schistosomiasis. We investigated the potential of remote sensing to characterize habitat conditions of parasite and intermediate host snails and discuss the relevance for public health.
Methodology
We employed high-resolution remote sensing data, environmental field measurements, and ecological data to model environmental suitability for schistosomiasis-related parasite and snail species. The model was developed for Burkina Faso using a habitat suitability index (HSI). The plausibility of remote sensing habitat variables was validated using field measurements. The established model was transferred to different ecological settings in Côte d’Ivoire and validated against readily available survey data from school-aged children.
Principal Findings
Environmental suitability for schistosomiasis transmission was spatially delineated and quantified by seven habitat variables derived from remote sensing data. The strengths and weaknesses highlighted by the plausibility analysis showed that temporal dynamic water and vegetation measures were particularly useful to model parasite and snail habitat suitability, whereas the measurement of water surface temperature and topographic variables did not perform appropriately. The transferability of the model showed significant relations between the HSI and infection prevalence in study sites of Côte d’Ivoire.
Conclusions/Significance
A predictive map of environmental suitability for schistosomiasis transmission can support measures to gain and sustain control. This is particularly relevant as emphasis is shifting from morbidity control to interrupting transmission. Further validation of our mechanistic model needs to be complemented by field data of parasite- and snail-related fitness. Our model provides a useful tool to monitor the development of new hotspots of potential schistosomiasis transmission based on regularly updated remote sensing data.
Schistosomiasis is a widespread water-based disease that puts close to 800 million people at risk of infection with more than 250 million infected, mainly in sub-Saharan Africa. Transmission is governed by the spatial distribution of specific freshwater snails that act as intermediate hosts and the frequency, duration and extent of human bodies exposed to infested water sources during human water contact. Remote sensing data have been utilized for spatially explicit risk profiling of schistosomiasis. Since schistosomiasis risk profiling based on remote sensing data inherits a conceptual drawback if school-based disease prevalence data are directly related to the remote sensing measurements extracted at the location of the school, because the disease transmission usually does not exactly occur at the school, we took the local environment around the schools into account by explicitly linking ecologically relevant environmental information of potential disease transmission sites to survey measurements of disease prevalence. Our models were validated at two sites with different landscapes in Côte d’Ivoire using high- and moderateresolution remote sensing data based on random forest and partial least squares regression. We found that the ecologically relevant modelling approach explained up to 70% of the variation in Schistosoma infection prevalence and performed better compared to a purely pixelbased modelling approach. Furthermore, our study showed that model performance increased as a function of enlarging the school catchment area, confirming the hypothesis that suitable environments for schistosomiasis transmission rarely occur at the location of survey measurements.
Mapping threatened dry deciduous dipterocarp forest in South-east Asia for conservation management
(2014)
Habitat loss is the primary reason for species extinction, making habitat conservation a critical strategy for maintaining global biodiversity. Major habitat types, such as lowland tropical evergreen forests or mangrove forests, are already well represented in many conservation priorities, while others are underrepresented. This is particularly true for dry deciduous dipterocarp forests (DDF), a key forest type in Asia that extends from the tropical to the subtropical regions in South-east Asia (SE Asia), where high temperatures and pronounced seasonal precipitation patterns are predominant. DDF are a unique forest ecosystem type harboring a wide range of important and endemic species and need to be adequately represented in global biodiversity conservation strategies. One of the greatest challenges in DDF conservation is the lack of detailed and accurate maps of their distribution due to inaccurate open-canopy seasonal forest mapping methods. Conventional land cover maps therefore tend to perform inadequately with DDF. Our study accurately delineates DDF on a continental scale based on remote sensing approaches by integrating the strong, characteristic seasonality of DDF. We also determine the current conservation status of DDF throughout SE Asia. We chose SE Asia for our research because its remaining DDF are extensive in some areas but are currently degrading and under increasing pressure from significant socio-economic changes throughout the region. Phenological indices, derived from MODIS vegetation index time series, served as input variables for a Random Forest classifier and were used to predict the spatial distribution of DDF. The resulting continuous fields maps of DDF had accuracies ranging from R-2 = 0.56 to 0.78. We identified three hotspots in SE Asia with a total area of 156,000 km(2), and found Myanmar to have more remaining DDF than the countries in SE Asia. Our approach proved to be a reliable method for mapping DDF and other seasonally influenced ecosystems on continental and regional scales, and is very valuable for conservation management in this region.