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The transmission of proliferative and developmental signals from activated cell-surface receptors to initiation of cellular responses in the nucleus is synergically controlled by the coordinated action of a diverse set of intracellular signalling proteins. The Ras/Raf/MEK/MAPK signalling pathway has been shown to control the expression of genes which are crucial for the physiological regulation of cell proliferation, differentiation and apoptosis. Within this signalling cascade, the Raf protein family of serine/threonine kinases serves as a central intermediate which connects to many of other signal transduction pathways. To elucidate the signalling functions of the different Raf kinases in motoneurons during development, the expression, distribution and subcellular localization of Rafs in the spinal cord and the facial nucleus in brainstem of mice at various embryonic and postnatal stages were investigated. Moreover, we have investigated the intracellular redistribution of Raf molecules in isolated motoneurons from 13 or 14 day old mouse embryos, after addition or withdrawal of neurotrophic factors to induce Raf kinases activation in vitro. Furthermore, in order to investigate the potential anti-apoptotic function of Raf kinases on motoneurons, we isolated motoneurons from B-raf-/- and c-raf-1-/- mouse embryos and analysed the survival and differentiation effects of neurotrophic factors in motoneurons lacking B-Raf and c-Raf-1. We provide evidence here that all three Raf kinases are expressed in mouse spinal motoneurons. Their expression increases during the period of naturally occurring cell death of motoneurons. In sections of embryonic and postnatal spinal cord, motoneurons express exclusively B-Raf and c-Raf-1, but not A-Raf, and subcellularly Raf kinases are obviously colocalized with mitochondria. In isolated motoneurons, most of the B-Raf or c-Raf-1 immunoreactivity is located in the perinuclear space but also in the nucleus, especially after activation by addition of CNTF and BDNF in vitro. We found that c-Raf-1 translocation from the cytosol into the nucleus of motoneurons after its activation by neurotrophic factors is a distinct event. As a central finding of our study, we observed that the viability of isolated motoneurons from B-raf but not c-raf-1 knockout mice is lost even in the presence of CNTF and other neurotrophic factors. This indicates that B-Raf but not c-Raf-1, which is still present in B-raf deficient motoneurons, plays a crucial role in mediating the survival effect of neurotrophic factors during development. In order to prove that B-Raf is an essential player in this scenario, we have re-expressed B-Raf in mutant sensory and motor neurons by transfection. The motoneurons and the sensory neurons from B-raf knockout mouse which were transfected with exogenous B-raf gene revealed the same viability in the presence of neurotrophic factors as primary neurons from wild-type mice. Our results suggest that Raf kinases have important signalling functions in motoneurons in mouse CNS. In vitro, activation causes redistribution of Raf protein kinases, particularly for c-Raf-1, from motoneuronal cytoplasm into the nucleus. This redistribution of c-Raf-1, however, is not necessary for the survival effect of neurotrophic factors, given that B-raf-/- motor and sensory neurons can not survive despite the presence of c-Raf-1. We hypothesize that c-Raf-1 nuclear translocation may play a direct role in transcriptional regulation as a consequence of neurotrophic factor induced phosphorylation and activation of c-Raf-1 in motoneurons. Moreover, the identification of target genes for nuclear translocated c-Raf-1 and of specific cellular functions initiated by this mechanism awaits its characterization.
Biofilm production is an important step in the pathogenesis of S. epidermidis polymer-associated infections and depends on the expression of the icaADBC operon leading to the synthesis of a polysaccharide intercellular adhesin (PIA). The PIA represents a sugar polymer consisting of ß-1,6 linked N-acetyl glucosaminoglycans and mediates the intercellular adherence of the bacteria to each other and the accumulation of a multilayered biofilm. Epidemiological and experimental studies strongly suggest that PIA-production and subsequently biofilm formation contributes significantly to the virulence of specific S. epidermidis strains. This work aimed on the investigation of external factors regulating the ica expression in S. epidermidis. For this purpose, a reporter gene fusion between the ica promoter and the beta-galactosidase gene lacZ from E. coli was constructed and integrated into the chromosome of an ica positive S. epidermidis clinical isolate. The reporter gene fusion was used to investigate the influence of external factors and of sub-MICs of different antibiotics on the ica expression. It was shown that the S. epidermidis biofilm formation is growth phase dependent with a maximum expression in the late logarithmic and early stationary growth phase. The optimal expression was recorded at 42 °C at a neutral pH ranging from 7.0 to 7.5. The glucose content of the medium was found to be essential for biofilm formation, since concentrations of 1.5 to 2 per cent glucose induced the ica expression. In addition, external stress factors as high osmolarity (mediated by 3 to 5 per cent sodium chloride), and sub-lethal concentrations of detergents, ethanol, hydrogene peroxide, and urea significantly enhanced the biofilm production. Subinhibitory concentrations of tetracyline, the semisynthetic streptogramin quinupristin/dalfopristin and the streptogramin growth promoter virginiamycin were found to enhance the ica expression 8 to 11-fold, respectively, whereas penicillin, oxacillin, gentamicin, clindamycin, vancomycin, teicoplanin, ofloxacin, and chloramphenicol had no effects. A weak induction was recorded for sub-MICs of erythromycin. Both quinupristin/ dalfopristin and tetracyline exhibited a strong postexposure effect on the S. epidermidis ica expression, respectively, even when the substances were immediately removed from the growth medium. The results were confirmed by Northern blot analysis of the ica transcription and quantitative analysis of biofilm formation in a colorimetric assay. Expression of the icaprom::lacZ reporter gene plasmid in Bacillus subtilis and S. epidermidis revealed that the ica induction by sub-MICs of streptogramins and tetracycline might depend on unidentified regulatory elements which are specific for the staphylococcal cell. In contrast, the activation by external stress signals seems to be mediated by factors which are present both in Staphylococci and in Bacillus subtilis. Construction and analysis of an agr-mutant in a biofilm-forming S. epidermidis strain excluded the possibility that the Agr-quorum-sensing system significantly contributes to the ica expression in the stationary growth phase. However, clear evidence was provided that in S. aureus the ica transcription depends on the expression of the alternative transcription factor sigmaB, which represents a global regulator of the stress response in S. aureus as well as in B. subtilis. For this purpose, a sigB knockout mutant had been constructed in a biofilm-forming S. aureus. This mutant showed a markedly decrease of the ica transcription and biofilm-production, whereas a complement strain carrying the sigB gene on an expression vector completely restored the biofilm-forming phenotype of the S. aureus wild type. Southern blot analysis indicated that the the sigB gene is also present in S. epidermidis and Northern analyses of the sigB and the ica transcription revealed that both genes are activated under identical conditions (i. e. in the stationary growth phase and by external stress factors) suggesting a similar regulatory pathway as in S. aureus. However, since neither in S. aureus nor in S. epidermidis the ica promoter has obvious similiarities to known SigB-dependent promotoer sequences it is tempting to speculate that the ica activation is not directely mediated by SigB, but might be indirectely controlled by other SigB-dependent regulatory elements which remain to be elucidated.
Many polymorphisms are linked to alternative reproductive strategies. In animals, this is particularly common in males. Ant queens are an important exception. The case of ant queen size dimorphisms has not been studied in sufficient detail, and thus this thesis aimed at elucidating causes and consequences of the different size of small (microgynous) and large (macrogynous)ant queens using the North American ant species Leptothorax rugatulus as a model system. Employing neutral genetic markers, no evidence for a taxonomically relevant separation of the gene pools of macrogynes and microgynes was found. Queens in polygynous colonies were highly related to each other, supporting the hypothesis that colonies with more than one queen commonly arise by secondary polygyny, i.e. by the adoption of daughter queens into their natal colonies. These results and conclusions are also true for the newly discovered queen size polymorphism in Leptothorax cf. andrei. Several lines of evidence favor the view that macrogynes predominantly found their colonies independently, while microgynes are specialized for dependent colony founding by readoption. Under natural conditions, mother and daughter size are highly correlated and this is also true for laboratory colonies. However, the size of developing queens is influenced by queens present in the colony. Comparing populations across the distribution range, it turns out that queen morphology (head width and ovariole number) is more differentiated among populations than worker morphology (coloration, multivariate size and shape), colony characteristics (queen and worker number per colony) or neutral genetic variation. Northern and southern populations differed consistently which indicates the possibility of two different species. The queen size dimorphism in L. rugatulus did neither influence the sex ratio produced by a colony, nor its ratio of workers to gynes. However, the sex ratio covaried strongly across populations with the average number of queens per colony in accordance with sex ratio theory. At the colony level, sex ratio could not be explained by current theory and a hypothesis at the colony-level was suggested. Furthermore, queen body size has no significant influence on the amount of reproductive skew among queens. Generally, the skew in L. rugatulus is low, and supports incomplete control models, rather than the classic skew models. In eight of fourteen mixed or microgynous colonies, the relative contributions of individual queens to workers, gynes and males were significantly different. This was mainly due to the fact that relative body size was negatively correlated with the ratio of gynes to workers produced. This supports the kin conflict over caste determination hypothesis which views microgyny as a selfish reproductive tactic.
A central objective of many ecophysiological investigations is the establishment of mechanistic explanations for plant distributions in time and space. The important, albeit mostly ignored, question arises as to the nature of the organisms that should be used as representative in pertinent experiments. I suggest that it is essential to use a “demographic approach” in physiological ecology, because physiological parameters such as photosynthetic capacity (PC, determined under non-limiting conditions with the oxygen electrode) may change considerably with plant size. Moreover, as shown for nine epiphyte species covering the most important taxonomic groups, the intraspecific variability in PC was almost always higher than the interspecific variability when comparing only large individuals. In situ studies with the epiphytic bromeliad V. sanguinolenta revealed that besides physiological parameters (such as PC) almost all morphological, anatomical and other physiological leaf parameters studied changed with plant size as well. Likewise, important processes proved to be size-dependent on whole-plant level. For example, long-term water availability was clearly improved in large specimens compared to smaller conspecifics due to the increased efficiency of the tanks to bridge rainless periods. As model calculations on whole-plant level for V. sanguinolenta under natural conditions have shown photosynthetic leaf carbon gain as well as respiratory losses of heterotrophic plant parts scaled with plant size. The resulting area related annual carbon balances were similar for plants of varying size, which corresponded to observations of size-independent (and low) relative growth rates in situ. Under favorable conditions in the greenhouse, however, small V. sanguinolenta exhibited surprisingly high relative growth rates, similar to annuals, which clearly contradicts the prevalent, but barely tested notion of epiphytes as inherently slow growing plants and simultaneously illustrates the profound resource limitations that epiphytes are subjected to in the canopy of a seasonal rain forest. From habitat conditions it seems that size-related differences in water availability are the driving force behind the observed size-dependent ecophysiological changes: the larger an epiphyte grows the more independent it is with regard to precipitation patterns. In conclusion, the results strongly emphasize the need to treat plant size as an important source of intraspecific variability and thus urge researchers to consider plant size in the design of ecophysiological experiments with vascular epiphytes.
In north-western Namibia the fills of the Karoo-Etendeka depositories can be subdivided into (1) a Carboniferous-Permian, (2) a Triassic-Jurassic and (3) a Cretaceous megasequence, each recording extensional periods related to successive rifting phases in the evolving South Atlantic. The tectonic environment of the depositories in north-western Namibia changes successively from the coast towards the continental interior, which is reflected by the facies distribution and the position of time-stratigraphic gaps. Close to the present-day coastline synsedimentary listric faults, trending parallel to the South Atlantic rift (N-S), caused the formation of wedge shaped sediment bodies. Here, the Karoo Supergroup is only represented by the Permian succession in the Huab area. A hiatus within the Permian can be recognised by the correlation with the main Karoo Basin in South Africa and the Brazilian Paraná Basin. This stratal gap correlates with a pre-Beaufort Group unconformity in the main Karoo Basin that might be related to an orogenic pulse in the Cape Fold Belt. The Permian succession itself is unconformably overlain by the Lower Cretaceous Etendeka Group. This hiatus extending from the Upper Permian to the Lower Cretaceous has probably been induced by a combination of rift shoulder uplift and additional crustal doming associated with Etendeka flood volcanism. The enhanced tectonism during the Early Cretaceous controlled accommodation space for the alluvial-fluvial and aeolian deposits of the lower Etendeka Group. Disconformities within those deposits and the overlying lava succession attribute to distinct phases of tectonic and volcanic activity heralding the South Atlantic breakup. Towards the south-east, the Karoo succession becomes successively more complete. In the vicinity of Mt. Brandberg Early Triassic strata (Middle Omingonde Formation) follow disconformably above the Upper Permian/Lowermost Triassic Doros Formation. The sedimentation there was essentially controlled by the SW-NE trending Damaraland Uplift. South of the Damaraland Uplift the SW-NE trending Waterberg-Omaruru Fault zone is interpreted as a sinistral oblique-slip fault that compartmentalised the South Atlantic rift. This fault controlled accommodation space of the entire Triassic Omingonde Formation and the Early Jurassic Etjo Formation in its associated pull-apart and transtension structures. A locally well developed angular unconformity defines a hiatus between the two formations. Correlation with the main Karoo Basin in South Africa confirms that this gap is of a regional extent and not only a local, fault induced feature. Furthermore, it might also correlate with an orogenic pulse of the Cape Fold Belt. In general, the Mesozoic megasequences record the long-lived history of the southern Atlantic rift evolution. Rifting has been controlled by orogenic pulses derived from the Samfrau active margin throughout the Mesozoic. The associated intracratonic E-W extension caused the formation of grabens and conjugated oblique-slip zones. The generation of voluminous flood basalts marks the climax of intracratonic extension that was accompanied by enhanced uplift of the rift shoulders.
A quantitative model of groundwater flows contributing to the Goblenz state water scheme at the north-western fringe of the Kalahari was developed within this study. The investigated area corresponds to the Upper Omatako basin and encompasses an outer mountainous rim and sediments of the Kalahari sand desert in the centre. This study revealed the eminent importance of the mountainous rim for the water balance of the Kalahari, both in terms of surface and ground water. A hydrochemical subdivision of groundwater types in the mountain rim around the Kalahari was derived from cluster analysis of hydrochemical groundwater data. The western and south-western secondary aquifers within rocks of the Damara Sequence, the Otavi Mountain karst aquifers of the Tsumeb and Abenab subgroups as well as the Waterberg Etjo sandstone aquifer represent the major hydrochemical groups. Ca/Mg and Sr/Ca ratios allowed to trace the groundwater flow from the Otavi Mountains towards the Kalahari near Goblenz. The Otavi Mountains and the Waterberg were identified as the main recharge areas showing almost no or only little isotopic enrichment by evaporation. Soil water balance modelling confirmed that direct groundwater recharge in hard-rock environments tends to be much higher than in areas covered with thick Kalahari sediments. According to the water balance model average recharge rates in hard-rock exposures with only thin sand cover are between 0.1 and 2.5 % of mean annual rainfall. Within the Kalahari itself very limited recharge was predicted (< 1 % of mean annual rainfall). In the Upper Omatako basin the highest recharge probability was found in February in the late rainfall season. The water balance model also indicated that surface runoff is produced sporadically, triggering indirect recharge events. Several sinkholes were discovered in the Otavi Foreland to the north of Goblenz forming short-cuts to the groundwater table and preferential recharge zones. Their relevance for the generation of indirect recharge could be demonstrated by stable isotope variations resulting from observed flood events. Within the Kalahari basin several troughs were identified in the pre-Kalahari surface by GIS-based analyses. A map of saturated thickness of Kalahari sediments revealed that these major troughs are partly saturated with groundwater. The main trough, extending from south-west to north-east, is probably connected to the Goblenz state water scheme and represents a major zone of groundwater confluence, receiving groundwater inflows from several recharge areas in the Upper Omatako basin. As a result of the dominance of mountain front recharge the groundwater of the Kalahari carries an isotopic composition of recharge at higher altitudes. The respective percentages of inflow into the Kalahari from different source areas were determined by a mixing-cell approach. According to the mixing model Goblenz receives most of its inflow (70 to 80 %) from a shallow Kalahari aquifer in the Otavi Foreland which is connected to the Otavi Mountains. Another 15 to 10 % of groundwater inflow to the Kalahari at Goblenz derive from the Etjo sandstone aquifer to the south and from inflow of a mixed component. In conclusion, groundwater abstraction at Goblenz will be affected by measures that heavily influence groundwater inflow from the Otavi Mountains, the Waterberg, and the fractured aquifer north of the Waterberg.
Thin, pyroclastic marker beds are preserved in argillaceous units of the Dwyka Group in southern Nambia and South Africa which are the earliest witnesses of volcanism in Karoo-equivalent strata of southern Africa. The aim of this study is to present the field appearance of these marker beds, to characterise their mineralogy, geochemistry and heavy mineral contents and to present new radiometric age data from their juvenile zircons. Carboniferous-Permian Karoo deposits in the Aranos Basin of southern Namibia include the glacially dominated, Carboniferous Dwyka Group and the shelf sediments of the overlying Permian Ecca Group. The Dwyka Group can be subdivided into four upward-fining deglaciation sequences, each capped by relatively fine-grained glaciolacustrine or glaciomarine deposits. The uppermost part of the second deglaciation sequence comprises a thick fossiliferous mudstone unit, referred to as the ”Ganigobis Shale Member”. An abundance of marine macro- and ichnofossils as well as extrabasinally derived ashfall tuff beds characterise the more than 40 m thick mudstones and provide the basis for an integrated high-resolution biostratigraphic and tephrostratigraphic framework. The Ganigobis Shale Member contains remains of paleoniscoid fishes, bivalves, gastropods, scyphozoa, crinoid stalks, sponges and sponge spicules, radiolaria, coprolites and permineralised wood. These mostly marine body and trace fossils record the extent of the first of a series of marine incursions into the disintegrating Gondwanan interior as early as the Carboniferous. Within the Ganigobis Shale Member 21 bentonitic tuff beds displaying a thickness of 0.1 and 2.0 cm were determined which in part can be traced laterally over tens of kilometres indicating an ashfall derivation. Further bentonitic tuff beds of the Dwyka Group were detected in cut banks of the Orange River near Zwartbas in the Karasburg Basin (southern Namibia). The 65 tuff beds vary between 0.1 and 4.0 cm in thickness. Due to a similar fossil content and age of the background deposits, the tuff beds are thought to have originated from the same source area as those from the Aranos Basin. Thin-sections reveal the derivation of the tuff beds as distal fallout ashes produced by explosive volcanic eruptions. The matrix consists of a micro- to cryptocrystalline clay mineral-quartz mixture. Rare fragments of splinter quartz, completely recrystallized ash-sized particles of former volcanic glass and few apatite and zircon grains are the only juvenile components. The tuff beds contain as non-opaque, juvenile heavy minerals mostly zircon, apatite, monazite and sphene but also biotite, garnet, hornblende and tourmaline. Geochemical analyses point to an original, intermediate to acid composition of the tuff samples. LREE enrichment and Eu-anomalies show that the parent magma of the tuff beds was a highly evolved calc-alkaline magma. Tectonomagmatic discrimination diagrams point to a volcanic arc setting. Bedding characteristics and the lack of any Carboniferous-Permian volcanic successions onshore Namibia makes an aeolian transport of the ash particles over larger distances likely. Siliceous ashes could thus have been transported by prevailing south-westerly winds from arc-related vents in South America to southern Africa. A second, more local source area could have been located in an intracontinental rift zone along the western margin of southern Africa which is indicated by north-south directed ice-flow directions in the Late Carboniferous. SHRIMP-based age determinations of juvenile magmatic zircons separated from the tuff beds allow a new time calibration of Dwyka Group deglaciation sequences II - IV and the Dwyka/Ecca boundary. Zircons of the Ganigobis Shale Member yield SHRIMP-ages of 302-300 Ma. This dates the uppermost part of the second deglaciation sequence in southern Namibia to the Late Carboniferous (Gzelian) and provides a minimum age for the onset of Karoo-equivalent marine deposition. The age of the uppermost argillaceous part of the third deglaciation sequence (297 Ma) was determined from zircons of a tuffaceous bed sampled in a roadcut in the Western Cape Province, South Africa. The deposits correlate with the Hardap Shale Member in the Aranos Basin of southern Namibia which are part of much more widespread Eurydesma transgression. The age of the Dwyka/Ecca boundary was determined by SHRIMP-measurements of juvenile zircons from two tuff beds of the basal Prince Albert Formation sampled in the Western Cape Province (South Africa). The zircons revealed ages of 289 - 288 Ma which date the Dwyka/Ecca boundary at about 290 Ma. According to these ages, deglaciation sequences II-IV lasted for 5 Ma on average.
Most natural learning situations are of a complex nature and consist of a tight conjunction of the animal's behavior (B) with the perceived stimuli. According to the behavior of the animal in response to these stimuli, they are classified as being either biologically neutral (conditioned stimuli, CS) or important (unconditioned stimuli, US or reinforcer). A typical learning situation is thus identified by a three term contingency of B, CS and US. A functional characterization of the single associations during conditioning in such a three term contingency has so far hardly been possible. Therefore, the operational distinction between classical conditioning as a behavior-independent learning process (CS-US associations) and operant conditioning as essentially behavior-dependent learning (B-US associations) has proven very valuable. However, most learning experiments described so far have not been successful in fully separating operant from classical conditioning into single-association tasks. The Drosophila flight simulator in which the relevant behavior is a single motor variable (yaw torque), allows for the first time to completely separate the operant (B-US, B-CS) and the classical (CS-US) components of a complex learning situation and to examine their interactions. In this thesis the contributions of the single associations (CS-US, B-US and B-CS) to memory formation are studied. Moreover, for the first time a particularly prominent single association (CS-US) is characterized extensively in a three term contingency. A yoked control shows that classical (CS-US) pattern learning requires more training than operant pattern learning. Additionally, it can be demonstrated that an operantly trained stimulus can be successfully transferred from the behavior used during training to a new behavior in a subsequent test phase. This result shows unambiguously that during operant conditioning classical (CS-US) associations can be formed. In an extension to this insight, it emerges that such a classical association blocks the formation of an operant association, which would have been formed without the operant control of the learned stimuli. Instead the operant component seems to develop less markedly and is probably merged into a complex three-way association. This three-way association could either be implemented as a sequential B-CS-US or as a hierarchical (B-CS)-US association. The comparison of a simple classical (CS-US) with a composite operant (B, CS and US) learning situation and of a simple operant (B-US) with another composite operant (B, CS and US) learning situation, suggests a hierarchy of predictors of reinforcement. Operant behavior occurring during composite operant conditioning is hardly conditioned at all. The associability of classical stimuli that bear no relation to the behavior of the animal is of an intermediate value, as is operant behavior alone. Stimuli that are controlled by operant behavior accrue associative strength most easily. If several stimuli are available as potential predictors, again the question arises which CS-US associations are formed? A number of different studies in vertebrates yielded amazingly congruent results. These results inspired to examine and compare the properties of the CS-US association in a complex learning situation at the flight simulator with these vertebrate results. It is shown for the first time that Drosophila can learn compound stimuli and recall the individual components independently and in similar proportions. The attempt to obtain second-order conditioning with these stimuli, yielded a relatively small effect. In comparison with vertebrate data, blocking and sensory preconditioning experiments produced conforming as well as dissenting results. While no blocking could be found, a sound sensory preconditioning effect was obtained. Possible reasons for the failure to find blocking are discussed and further experiments are suggested. The sensory preconditioning effect found in this study is revealed using simultaneous stimulus presentation and depends on the amount of preconditioning. It is argued that this effect is a case of 'incidental learning', where two stimuli are associated without the need of reinforcement. Finally, the implications of the results obtained in this study for the general understanding of memory formation in complex learning situations are discussed.
The Gram-negative, spiral-shaped, microaerophilic bacterium Helicobacter pylori is the causative agent of various disorders of the upper gastrointestinal tract, such as chronic superficial gastritis, chronic active gastritis, peptic ulceration and adenocarcinoma. Although many of the bacterial factors associated with disease development have been analysed in some detail in the recent years, very few studies have focused so far on the mechanisms that regulate expression of these factors at the molecular level. In an attempt to obtain an overview of the basic mechanisms of virulence gene expression in H. pylori, three important virulence factors of this pathogen, representative of different pathogenic mechanisms and different phases of the infectious process, are investigated in detail in the present thesis regarding their transcriptional regulation. As an essential factor for the early phase of infection, including the colonisation of the gastric mucosa, the flagella are analysed; the chaperones including the putative adhesion factors GroEL and DnaK are investigated as representatives of the phase of adherence to the gastric epithelium and persistence in the mucus layer; and finally the cytotoxin associated antigen CagA is analysed as representative of the cag pathogenicity island, which is supposed to account for the phenomena of chronic inflammation and tissue damage observed in the later phases of infection. RNA analyses and in vitro transcription demonstrate that a single promoter regulates expression of cagA, while two promoters are responsible for expression of the upstream divergently transcribed cagB gene. All three promoters are shown to be recognised by RNA polymerase containing the vegetative sigma factor sigma 80. Promoter deletion analyses establish that full activation of the cagA promoter requires sequences up to -70 and binding of the C-terminal portion of the alpha subunit of RNA polymerase to an UP-like element located between -40 and -60, while full activation of the major cagB promoter requires sequences upstream of -96 which overlap with the cagA promoter. These data suggest that the promoters of the pathogenicity island represent a class of minimum promoters, that ensure a basic level of transcription, while full activation requires regulatory elements or structural DNA binding proteins that provide a suitable DNA context. Regarding flagellar biosynthesis, a master transcriptional factor is identified that regulates expression of a series of flagellar basal body and hook genes in concert with the alternative sigma factor sigma 54. Evidence is provided that this regulator, designated FlgR (for flagellar regulatory protein), is necessary for motility and transcription of five promoters for seven basal body and hook genes. In addition, FlgR is shown to act as a repressor of transcription of the sigma 28-regulated promoter of the flaA gene, while changes in DNA topology are shown to affect transcription of the sigma 54-regulated flaB promoter. These data indicate that the regulatory network that governs flagellar gene expression in H. pylori shows similarities to the systems of both Salmonella spp. and Caulobacter crescentus. In contrast to the flagellar genes which are regulated by three different sigma factors, the three operons encoding the major chaperones of H. pylori are shown to be transcribed by RNA polymerase containing the vegetative sigma factor sigma 80. Expression of these operons is shown to be regulated negatively by the transcriptional repressor HspR, a homologue of a repressor protein of Streptomyces spp., known to be involved in negative regulation of heat shock genes. In vitro studies with purified recombinant HspR establish that the protein represses transcription by binding to large DNA regions centered around the transcription initiation site in the case of one promoter, and around -85 and -120 in the case of the the other two promoters. In contrast to the situation in Streptomyces, where transcription of HspR-regulated genes is induced in response to heat shock, transcription of the HspR-dependent genes in H. pylori is not inducible with thermal stimuli. Transcription of two of the three chaperone encoding operons is induced by osmotic shock, while transcription of the third operon, although HspR-dependent, is not affected by salt treatment. Taken together, the analyses carried out indicate that H. pylori has reduced its repertoire of specific regulatory proteins to a basic level that may ensure coordinate regulation of those factors that are necessary during the initial phase of infection including the passage through the gastric lumen and the colonisation of the gastric mucosa. The importance of DNA topology and/or context for transcription of many virulence gene promoters may on the other hand indicate, that a sophisticated global regulatory network is present in H. pylori, which influences transcription of specific subsets of virulence genes in response to changes in the microenvironment.
Unique functions of DNA topoisomerase IIalpha and IIbeta have been suggested. A human cell line which carries a homozygeous mutation of the nuclear localization sequence of the topoisomerase IIalpha gene expresses the isoform outside the nucleus at the onset of mitosis. At mitosis topoisomerase IIbeta diffused away from the chromatin despite the nuclear lack of the IIalpha-form. Chromosome condensation and disjunction was performed with the aid of cytosolic topoisomerase IIalpha which bound to the mitotic chromatin with low affinity. Consequently an increased rate of nondisjunction is observed in these cells. It is concluded that high affinity chromatin binding of topoisomerase IIalpha is essential for chromosome condensation/disjunction and that topoisomerase IIbeta does not adopt these functions. A centrosomal protein was recognized by topoisomerase IIalpha. This topoisomerase IIalpha-like protein resembles a modified form of topoisomerase IIalpha with an apparent size of 205 kDa compared to 170 kDa. The expression of the protein is constant in all stages of the cell cycle and it appears in proliferating as well as in resting cells. If there is not sufficient topoisomerase IIalpha present at mitosis the centrosomal proteins might adopt the function and a mitotic catastrophe in the cells could therefore be prevented.