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- Theodor-Boveri-Institut für Biowissenschaften (124)
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Schriftenreihe
Sonstige beteiligte Institutionen
- Clinical Trial Center (CTC) / Zentrale für Klinische Studien Würzburg (ZKSW) (3)
- Röntgen Center for Complex Material Systems (RCCM), Am Hubland, 97074 W¨urzburg, Germany (2)
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ResearcherID
- I-5818-2014 (1)
The composition of stable-isotope labelled isotopologues/isotopomers in metabolic products can be measured by mass spectrometry and supports the analysis of pathways and fluxes. As a prerequisite, the original mass spectra have to be processed, managed and stored to rapidly calculate, analyse and compare isotopomer enrichments to study, for instance, bacterial metabolism in infection. For such applications, we provide here the database application ‘Isotopo’. This software package includes (i) a database to store and process isotopomer data, (ii) a parser to upload and translate different data formats for such data and (iii) an improved application to process and convert signal intensities from mass spectra of \(^{13}C\)-labelled metabolites such as tertbutyldimethylsilyl-derivatives of amino acids. Relative mass intensities and isotopomer distributions are calculated applying a partial least square method with iterative refinement for high precision data. The data output includes formats such as graphs for overall enrichments in amino acids. The package is user-friendly for easy and robust data management of multiple experiments.
A novel magnetic ground state is reported for the Hubbard Hamiltonian in strained graphene. When the chemical potential lies close to the Dirac point, the ground state exhibits locally both the Neel and ferromagnetic orders, even for weak Hubbard interaction. Whereas the Neel order parameter remains of the same sign in the entire system, the magnetization at the boundary takes the opposite sign from the bulk. The total magnetization vanishes this way, and the magnetic ground state is globally only an antiferromagnet. This peculiar ordering stems from the nature of the strain-induced single-particle zero-energy states, which have support on one sublattice of the honeycomb lattice in the bulk, and on the other sublattice near the boundary of a finite system. We support our claim with the self-consistent numerical calculation of the order parameters, as well as by the Monte Carlo simulations of the Hubbard model in both uniformly and nonuniformly strained honeycomb lattice. The present result is contrasted with the magnetic ground state of the same Hubbard model in the presence of a true magnetic field (and for vanishing Zeeman coupling), which is exclusively Neel ordered, with zero local magnetization everywhere in the system.
Mutations in the oncogenic PIK3CA gene are found in 10-20% of colorectal cancers (CRCs) and are associated with poor prognosis. Tumor necrosis factor-related apoptosis-inducing ligand (TRAIL) and agonistic TRAIL death receptor antibodies emerged as promising anti-neoplastic therapeutics, but to date failed to prove their capability in the clinical setting as especially primary tumors exhibit high rates of TRAIL resistance. In our study, we investigated the molecular mechanisms underlying TRAIL resistance in CRC cells with a mutant PIK3CA (PIK3CA-mut) gene. We show that inhibition of the constitutively active phosphatidylinositol-3 kinase (PI3K)/Akt signaling pathway only partially overcame TRAIL resistance in PIK3CA-mut-protected HCT116 cells, although synergistic effects of TRAIL plus PI3K, Akt or cyclin-dependent kinase (CDK) inhibitors could be noted. In sharp contrast, TRAIL triggered full-blown cell death induction in HCT116 PIK3CA-mut cells treated with proteasome inhibitors such as bortezomib and MG132. At the molecular level, resistance of HCT116 PIK3CA-mut cells against TRAIL was reflected by impaired caspase-3 activation and we provide evidence for a crucial involvement of the E3-ligase X-linked inhibitor of apoptosis protein (XIAP) therein. Drugs interfering with the activity and/or the expression of XIAP, such as the second mitochondria-derived activator of caspase mimetic BV6 and mithramycin-A, completely restored TRAIL sensitivity in PIK3CA-mut-protected HCT116 cells independent of a functional mitochondrial cell death pathway. Importantly, proteasome inhibitors and XIAP-targeting agents also sensitized other CRC cell lines with mutated PIK3CA for TRAIL-induced cell death. Together, our data suggest that proteasome-or XIAP-targeting drugs offer a novel therapeutic approach to overcome TRAIL resistance in PIK3CA-mutated CRC.
Einen Satz syntaktisch zu analysieren heißt, ein Satzverstehen nach bestimmten Kriterien offenzulegen. Jeder Satzanalyse geht ein grundsätzliches, voranalytisch verborgenes Verstehen ebenso voraus, wie der Prozess der Analyse ein solches Verstehen konkretisiert und ausdrücklich festzurrt: Ohne Verstehen keine Analyse. Für Analysen, die ein Satzverstehen syntaktisch explizieren sollen, benötigt man einen theoretischen Hintergrund, der die Analysewerkzeuge bereitstellt: Ohne Beschreibungsmittel keine Analyse. Schließlich braucht jede Analyse auch noch eine Darstellungsmethode: Ohne Festhalten der Ergebnisse kein Zugriff auf die Analyse.
Der vorliegende Band versteht sich als eine Explikation von Satzverstehen anhand eines konkreten, valenzorientierten Beschreibungsinventars. Im Vordergrund stehen dabei die Visualisierungen der Analyse-Ergebnisse durch Baumgraphen. Über 100 Bäumchen sind hier zu einem Wald versammelt. Damit ist insbesondere (aber nicht nur) für Studierende, die nach dieser Methode Sätze analysieren, eine Möglichkeit gegeben, einen valenz- und dependenzgrammatischen Zugriff auf verschiedene syntaktisch beschreibbare Phänomene authentischen Sprachvorkommens zu erproben. Darüber hinaus stellt der „Würzburger Wald“ unter Beweis, dass die in diesem Band intensiv angewandte Analysemethode ein stabiles Instrument für adäquate syntaktische Analysen sprachlicher Einheiten aus der freien Wildbahn journalistischer Textproduktion ist.
Words are built from smaller meaning bearing parts, called morphemes. As one word can contain multiple morphemes, one morpheme can be present in different words. The number of distinct words a morpheme can be found in is its family size. Here we used Birth-Death-Innovation Models (BDIMs) to analyze the distribution of morpheme family sizes in English and German vocabulary over the last 200 years. Rather than just fitting to a probability distribution, these mechanistic models allow for the direct interpretation of identified parameters. Despite the complexity of language change, we indeed found that a specific variant of this pure stochastic model, the second order linear balanced BDIM, significantly fitted the observed distributions. In this model, birth and death rates are increased for smaller morpheme families. This finding indicates an influence of morpheme family sizes on vocabulary changes. This could be an effect of word formation, perception or both. On a more general level, we give an example on how mechanistic models can enable the identification of statistical trends in language change usually hidden by cultural influences.
This thesis explores the influence of social and environmental cues on the nest building behavior of leaf-cutting ants. Especially, the investigations are aimed at evaluating the mechanisms of nest building and how the nest environment can spatially guide building responses that lead to an adaptive nest architecture. The emergence of nest chambers in the nest of the leaf-cutting ant Acromyrmex lundi were evaluated. Rather than excavating nest chambers in advance, at places where workers encounter suitable environmental conditions for brood and fungus rearing, these items have to be present at a site. When presented in the laboratory with a choice between two otherwise identical digging sites, offering suitable environmental conditions, but one containing brood, the workers displayed a higher excavation activity at the site where they encountered the putative content of a chamber. The shape of the excavated cavity was also more round and chamber-like. It is concluded that leaf-cutting ants respond to social cues during nest building. Excavation is a costly process and colonies have to spend a part of their energy stores on nest building, so that regulatory responses for the control of nest excavation are expected to occur. Worker density at the beginning of the digging process influenced digging activity while the presence of in-nest stores did not. Stored brood and fungus did however influence the architecture of the excavated nest, leading to the excavation of larger chambers and smaller tunnels. While self-organized mechanisms appear to be involved in the nest building process, the social cues of the ants’ environment during building clearly influence the nest architecture and lead to an adjustment of the nest size to the current space needs of the colony. Workers secondarily regulated nest size by the opportunistic refilling of unused space with excavated soil pellets. As the ants should provide suitable conditions for brood and fungus rearing, they should show a behavioral response to CO2 concentrations, as the gas is known to hinder fungus respiration. Workers of A. lundi did indeed avoid high CO2-levels for fungus rearing but actually preferred CO2-values in the range encountered close to the soil surface, where this species excavates their nests. However, different CO2-levels did not affect their excavation behavior. While fungus chambers make up part of a leaf-cutting ant nest, most leaf-cutting ants of the genus Atta also spent part of the colony’s energy on excavating large, voluminous chambers for waste disposal, rather than scattering the material aboveground. It is expected that leaf-cutting ants also show environmental preferences for waste management. In experiments Atta laevigata workers preferred deposition in a warm and dry environment and showed no preference for specific CO2-levels. The continued accumulation of waste particles in a waste chamber seems to be based on the use of volatiles. These originate from the waste itself, and seem to be used as an orientation cue by workers relocating the material. The ensuing large accumulation of waste at one site should result in the emergence of more voluminous chambers for waste disposal.
In den vergangenen Jahren wurden vermehrt sogenannte Alginatersatzmaterialien für Indikationsbereiche entwickelt, für die bislang hauptsächlich Alginate verwendet wurden. In dieser in-vitro Studie wurden acht Alginatersatzmaterialien auf Basis von additionsvernetzenden Silikonen und vier Alginate auf ausgewählte mechanische Werkstoffeigenschaften hin untersucht, um beide Materialarten zu vergleichen und daraus Anwendungsempfehlungen ableiten zu können. Die getesteten Alginate waren Alginoplast Regular Set, Blueprint XCreme, Jeltrate Regular Set und Xantalgin select Fast Set. Die getesteten A-Silikone waren AlgiNot FS Cartridge und Volume, AlginX Ultra Cartridge, Position Penta, Silginat, Status Blue, Xantasil Cartridge und Dynamix fast set. Dabei wurden folgenden Materialeigenschaften untersucht: Verformung unter Druck, Rückstellung nach Verformung, Detailwiedergabegenauigkeit, Dimensionsstabilität, Reißfestigkeit, -dehnung, -energie, Toughness, E-Modul und Homogenität. Die Messverfahren, die verwendet wurden, sind in den Normen DIN EN ISO 4823, DIN EN 21563 und DIN 53504 beschrieben. Zur Messung der Dimensionsstabilität wurde ein neues Verfahren angewendet. Der Vergleich der Homogenität richtete sich nach rein optischen Kriterien der abgebundenen Abformmaterialien.
Die Ergebnisse zeigen, dass die getesteten Alginatsubstitute gegenüber den Alginaten vorteilhafte Eigenschaften besitzen. Alginate sind gegenüber äußeren Kräften nicht annähernd so widerstandsfähig wie Silikone und lassen sich bei gleicher Krafteinwirkung stärker komprimieren (Verformung unter Druck). Alginate sind leichter, aber weniger weit dehnbar (Reißdehnung). Die Alginate reißen bei deutlich geringerer Zugbelastung (Reißfestigkeit), vor allem in Bereichen, in denen das Abformmaterial nur dünn ausgelaufen ist (Toughness). Die elastische Rückstellungsrate der Alginate und von AlgiNot nach Druckbelastung liegt zwar noch im Normbereich, ist jedoch deutlich geringer als bei den anderen Silikonen, welche eine nahezu vollständige Rückstellung aufweisen. Sowohl Silikone als auch Alginate sind prinzipiell in der Lage, auch feinste Strukturen von 20µm Breite gut abzuformen (Detailwiedergabegenauigkeit). Der Versuch zur Messung der Dimensionsänderung zeigt, dass Alginatabformungen selbst unter optimalen Lagerungsbedingungen bereits nach weniger als 24 Stunden so stark geschrumpft sind, dass es ratsam ist die Abformung zu wiederholen. Die Silikone können mit Ausnahme von Silginat mindesten 14 Tage gelagert werden. Für Silginatabformungen wird eine Lagerungsdauer von maximal sieben Tagen empfohlen. Die Beobachtungen zur Homogenität der angemischten Materialien lassen schließen, dass Silikone bei Verwendung von Automischmaschinen besser und gleichmäßiger vermischt werden.
Aufgrund der besseren Materialeigenschaften eignen sich Alginatsubstitute vor allem für Abformungen, die über längere Zeit gelagert werden müssen, bevor ein Gipsmodell hergestellt werden kann und haben den Vorteil, dass aus einer Abformung mehrere Modelle hergestellt werden können. Für die meisten Indikationen genügen die Eigenschaften der Alginate zur Herstellung hinreichend genauer Modelle. Alginate haben außerdem den Vorteil, dass Abformungen mit deutlich geringerer Kraft aus dem Mund entnommen werden können.
Objective: The aim of this longitudinal study was to identify predictors of instantaneous well-being in patients with amyotrophic lateral sclerosis (ALS). Based on flow theory well-being was expected to be highest when perceived demands and perceived control were in balance, and that thinking about the past would be a risk factor for rumination which would in turn reduce well-being.
Methods: Using the experience sampling method, data on current activities, associated aspects of perceived demands, control, and well-being were collected from 10 patients with ALS three times a day for two weeks.
Results: Results show that perceived control was uniformly and positively associated with well-being, but that demands were only positively associated with well-being when they were perceived as controllable. Mediation analysis confirmed thinking about the past, but not thinking about the future, to be a risk factor for rumination and reduced well-being.
Discussion: Findings extend our knowledge of factors contributing to well-being in ALS as not only perceived control but also perceived demands can contribute to well-being. They further show that a focus on present experiences might contribute to increased well-being.
Despite improved survival in the Rituximab (R) era, a considerable number of patients with diffuse large B-cell lymphoma (DLBCL) ultimately die from the disease. Functional imaging using [18F]fluorodeoxyglucose-PET is suggested for assessment of residual viable tumor very early during treatment but is compromised by non-specific tracer retention in inflammatory lesions. The PET tracer [18F]fluorodeoxythymidine (FLT) as surrogate marker of tumor proliferation may overcome this limitation. We present results of a prospective clinical study testing FLT-PET as superior and early predictor of response to chemotherapy and outcome in DLBCL. 54 patients underwent FLT-PET prior to and one week after the start of R-CHOP chemotherapy. Repetitive FLT-PET imaging was readily implemented into the diagnostic work-up. Our data demonstrate that the reduction of FLT standard uptake valuemean (SUVmean) and SUVmax one week after chemotherapy was significantly higher in patients achieving complete response (CR, n=48; non-CR, n=6; p<0.006). Martingale-residual and Cox proportional hazard analyses showed a significant monotonous decrease of mortality risk with increasing change in SUV. Consistent with these results, early FLT-PET response showed relevant discriminative ability in predicting CR. In conclusion, very early FLT-PET in the course of R-CHOP chemotherapy is feasible and enables identification of patients at risk for treatment failure.
In dieser Dissertation wurden zwei Aspekte der Wechselwirkung von Laserpulsen mit Molekülen betrachtet: Erstens wurden numerische Algorithmen, die auf der zeitabhängigen Störungstheorie basieren, zur Berechnung von quantenmechanischen Wellenfunktionen analysiert. Zweitens wurden Effekte der absoluten Phase (Carrier envelope phase = CEP) von Laserpulsen bei der Laseranregung molekularer Systeme analysiert. In den Analysen zum ersten Aspekt wurden zwei verschiedene Algorithmen - in dieser Arbeit als simple und improved algorithm bezeichnet - verwendet, und die Normabweichung von mit diesen Algorithmen berechneten Wellenfunktionen untersucht. Es konnte gezeigt werden, dass diese Normabweichung für beide Algorithmen in zwei unterschiedliche Beiträge zerlegt werden kann. Der erste Normabweichungsbeitrag tritt aufgrund der numerischen Diskretisierung der Zeit auf und verschwindet, wenn der Zeitschritt, der die Dauer der Intervalle für diese Diskretisierung angibt, gegen Null geht. Man kann den ersten Normabweichungsbeitrag mit exzellenter Genauigkeit berechnen und seine Eigenschaften, die sich für die beiden Algorithmen erheblich unterschieden, eingehend analysieren. Der zweite Normabweichungsbeitrag tritt dadurch auf, dass die zeitabhängige Störungstheorie nicht normerhaltend ist, und geht daher gegen Null, wenn die Störungsordnung gegen unendlich geht. Dieser zweite Beitrag ist außerdem in guter Näherung unabhängig vom Zeitschritt und für beide Algorithmen näherungsweise gleich. Des Weiteren kann man das Verhalten des zweiten Normabweichungsbeitrags im Gegensatz zum ersten Beitrag nur qualitativ beschreiben. Für die Analyse zum zweiten Themengebiet dieser Arbeit, den CEP-Effekten, wurde betrachtet, ob CEP-Effekte auch für Laserpulse beliebiger Länge auftreten können. Über eine analytische Betrachtung erkennt man, dass dies für ein Zweiniveausystem nur dann der Fall ist, wenn beide Zustände vor Beginn der Wechselwirkung des Systems mit dem Laserpuls besetzt sind. Man kann aus diesem Ergebnis folgern, dass für einen Laserpuls, der zwei elektronische Zustände eines Moleküls über Einphotonenübergänge koppelt, in der Regel kein CEP-Effekt für beliebige Längen dieses Pulses auftritt. Der Grund dafür ist, dass vor der Wechselwirkung eines molekularen Systems mit einem Laserpuls für dieses üblicherweise nur der elektronische Grundzustand besetzt ist. In dieser Arbeit wird gezeigt, dass dieses Problem durch ein spezielles Zweipulsschema für die Anregung eines molekularen Systems gelöst werden kann. Für dieses Pulsschema wird ein erster Puls verwendet, der zeitlich so kurz ist, dass Wellenpakete in mehreren elektronischen Zuständen angeregt werden. Der nachfolgende zweite Laserpuls ist spektral schmal, und seine zeitliche Länge kann beliebig groß gewählt werden. Man erhält für dieses Pulsschema Observablen, die von der CEP des zweiten Pulses, aber nicht von der CEP des ersten Pulses abhängen; somit ist ein CEP-Effekt nachweisbar. Derartige Observablen sind geometrische Asymmetrien für Zerfallsprodukte von Photodissoziationsreaktionen. Insbesondere unterscheidet sich das hier vorgestellte Pulsschema von anderen Zweipulsschemata, für welche Observablen von der Differenz der CEPs beider Pulse abhängen, aber nicht von der CEP einer der beiden Pulse allein.