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Institute
- Theodor-Boveri-Institut für Biowissenschaften (23)
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Egg distribution in herbivorous beetles can be affected by bottom-up (host plant), and by top-down factors (parasitoids and predators), as well as by other habitat parameters. The importance of bottom-up and top-down effects may change with spatial scale. In this study, we investigated the influence of host plant factors and habitat structure on egg distribution in the leaf beetle Cassida canaliculata Laich. (Coleoptera: Chrysomelidae), a monophagous herbivore on Salvia pratensis L. (Lamiales: Lamiaceae), on four spatial scales: individual host plant, microhabitat, macrohabitat, and landscape. At the individual host plant scale we studied the correlation between egg clutch incidence and plant size and quality. On all other scales we analyzed the relationship between the egg clutch incidence of C. canaliculata and host plant percentage cover, host plant density, and the surrounding vegetation structure. Vegetation structure was examined as herbivores might escape egg parasitism by depositing their eggs on sites with vegetation factors unfavorable for host searching parasitoids. The probability that egg clutches of C. canaliculata were present increased with an increasing size, percentage cover, and density of the host plant on three of the four spatial scales: individual host plant, microhabitat, and macrohabitat. There was no correlation between vegetation structure and egg clutch occurrence or parasitism on any spatial scale. A high percentage of egg clutches (38–56%) was parasitized by Foersterella reptans Nees (Hymenoptera: Tetracampidae), the only egg parasitoid, but there was no relationship between egg parasitism and the spatial distribution of egg clutches of C. canaliculata on any of the spatial scales investigated. However, we also discuss results from a further study, which revealed top-down effects on the larval stage.
This thesis extends the classical theoretical work of Macevicz and Oster (1976, expanded by Oster and Wilson, 1978) on adaptive life history strategies in social insects. It focuses on the evolution of dynamic behavioural patterns (reproduction and activity) as a consequence of optimal allocation of energy and time resources. Mathematical modelling is based on detailed empirical observations in the model species Lasioglossum malachurum (Halictidae; Hymenoptera). The main topics are field observations, optimisation models for eusocial life histories, temporal variation in life history decisions, and annual colony cycles of eusocial insects.
Platelets are crucial to inhibit extensive blood loss at sites of vascular injury. However, under pathological conditions such as rupture of an atherosclerotic plaque, activated platelets form aggregates that may occlude the vessel. This can lead to heart attack and stroke. Various and complex signaling pathways in the cell are involved in the steps of platelet adhesion, activation and aggregation. Single aspects of these processes were studied in three different subprojects in this work. The Glycoprotein (GP) Ib-V-IX complex is responsible for the first contact of platelets with the vessel wall. Subsequently, GPVI can bind to collagen of the subendothelium, which initiates a signaling cascade leading to platelet activation, aggregation, characterized by integrin activation and granule secretion and platelet procoagulant activity. The latter is characterized by exposed phosphatidylserine (PS) on the platelet surface, which enhances thrombin generation and thereby the coagulation cascade. A controlled regulation of GP receptors on the platelet surface is vital for an intact response of the cell to platelet agonists. In the first subproject described here the regulation of GPV and GPVI on mouse platelets was investigated and it was found that both receptors are shed from the platelet surface in a metalloproteinase dependent manner. However, GPVI is shed upon mitochondrial injury, while GPV cleavage could be observed upon platelet stimulation. The metalloproteinase responsible for GPVI shedding remains unknown whereas the metallproteinase that sheds GPV was identified in this work as being ADAM17. This shows that the expression of both receptors underlies a controlled mechanism regulated through distinct metalloproteinases. In the second subproject the role of protein kinase C (PKC) in platelet activation and procoagulant response was investigated using PKC specific inhibitors. It was found that PKC blockage reduced platelet activation but enhanced platelet procoagulant activity. This is the first time that a dual role in platelet activation and procoagulant activity is defined for PKC. In the third project the role of the small GTPase Rac1 in platelet signaling was studied using conditional Rac1 knock out mice. It is reported here that Rac1 lies downstream of GPVI and is involved in integrin activation and cytsolic Ca2+ changes in vitro and platelet adhesion and thrombus formation in vivo. This is the first time that Rac1 is demonstrated to have a pivotal role in GPVI signaling and furthermore points to a novel, unknown pathway downstream of GPVI.
High-harmonic generation provides a powerful source of ultrashort coherent radiation in the XUV and soft-x-ray range, which also allows for the production of attosecond light pulses. Based on the unique properties of this new radiation it is now possible to perform time-resolved spectroscopy at high excitation energies, from which a wide field of seminal discoveries can be expected. Since the exploration and observation of the corresponding processes in turn are accompanied by the desire to control them, this work deals with new ways to manipulate and characterize the properties of these high-harmonic-based soft-x-ray pulses. After introductory remarks this work first presents a comprehensive overview over recent developments and achievements on the field of the control of high-harmonic radiation in order to classify the experimental results obtained in this work. These results include the control of high-harmonic radiation both by temporally shaping and by manipulating the spatial properties of the fundamental laser pulses. In addition, the influence of the conversion medium and of the setup geometry (gas jet, gas-filled hollow fiber) was investigated. Using adaptive temporal pulse shaping of the driving laser pulse by a deformable mirror, this work demonstrates the complete control over the XUV spectrum of high harmonics. Based on a closed-loop optimization setup incorporating an evolutionary algorithm, it is possible to generate arbitrarily shaped spectra of coherent soft-x-ray radiation in a gas-filled hollow fiber. Both the enhancement and suppression of narrowband high-harmonic emission in a selected wavelength region as well as the enhancement of coherent soft-x-ray radiation over a selectable extended range of harmonics (multiple harmonics) can be achieved. Since simulations that do not take into account spatial properties such as propagation effects inside a hollow fiber cannot reproduce the experimentally observed high contrast ratios between adjacent harmonics, a feedback-controlled adaptive two-dimensional spatial pulse shaper was set up to examine selective fiber mode excitation and the optimization of high-harmonic radiation in such a geometry. It is demonstrated that different fiber modes contribute to harmonic generation and make the high extent of control possible. These results resolve the long-standing issue about the controllability of high-harmonic generation in free-focusing geometries such as gas jets as compared to geometries where the laser is guided. Temporal pulse shaping alone is not sufficient. It was possible to extend the cutoff position of harmonics generated in a gas jet, however, selectivity cannot be achieved. The modifications of the high-harmonic spectrum have direct implications for the time structure of the harmonic radiation, including the possibility for temporal pulse shaping on an attosecond time scale. To this end, known methods for the temporal characterization of optical pulses and high-harmonic pulses (determination of the harmonic chirp on femtosecond and attosecond time scales) were introduced. The experimental progress in this work comprises the demonstration of different setups that are in principle suitable to determine the time structure of shaped harmonic pulses based on two-photon two-color ionization cross-correlation techniques. Photoelectron spectra of different noble gases generated by photoionization with high-harmonic radiation reproduce the spin-orbit splitting of the valence electrons and prove the satisfactory resolution of our electron time-of-flight spectrometer for the temporal characterization of high harmonics. Unfortunately no positive results for this part could be achieved so far, which can probably be attributed mainly to the lack of the focusability of the high harmonics and to the low available power of our laser system. However, we have shown that shaping the high-harmonic radiation in the spectral domain must result in modifications of the time structure on an attosecond time scale. Therefore this constitutes the first steps towards building an attosecond pulse shaper in the soft-x-ray domain. Together with the ultrashort time resolution, high harmonics open great possibilities in the field of time-resolved soft-x-ray spectroscopy, for example of inner-shell transitions. Tailored high-harmonic spectra as generated in this work and shaped attosecond pulses will represent a multifunctional toolbox for this kind of research.
Oviposition site selection in insects is essential in terms of low egg mortality, high offspring survival and therefore a high reproductive output. Although oviposition height could be a crucial factor for the fitness of overwintering eggs, it has rarely been investigated. In this study the oviposition height of a polyphagous leaf beetle, Galeruca tanaceti Linnaeus in different habitats and at different times of the season was examined and its effect on egg clutch mortality was recorded. The leaf beetle occurs as an occasional pest on several agricultural plants. It deposits its eggs within herbaceous vegetation in autumn. Eggs are exposed to numerous biotic and abiotic mortality factors summarized as egg parasitism and winter mortality. Oviposition height of the leaf beetle was not uniform, but changed significantly with the structure of the habitat and during the season. Mean oviposition height per site (70.2±4.9 cm) was significantly higher than mean vegetation height (28.4±2.4 cm). Height of plants with egg clutches attached and oviposition height were significantly positively correlated. The results suggest that females try to oviposit as high as possible in the vegetation and on the plants selected. In accordance with this, the probability of egg parasitism and of winter egg clutch mortality significantly declined with increasing oviposition height. A preference of G. tanaceti for oviposition sites high up in the vegetation might therefore have evolved due to selection pressures by parasitoids and winter mortality.
The optimal probability and distance of dispersal largely depend on the risk to end up in unsuitable habitat. This risk is highest close to the habitat’s edge and consequently, optimal dispersal probability and distance should decline towards the habitat’s border. This selection should lead to the emergence of spatial gradients in dispersal strategies. However, gene flow caused by dispersal itself is counteracting local adaptation. Using an individual based model we investigate the evolution of local adaptations of dispersal probability and distance within a single, circular, habitat patch. We compare evolved dispersal probabilities and distances for six different dispersal kernels (two negative exponential kernels, two skewed kernels, nearest neighbour dispersal and global dispersal) in patches of different size. For all kernels a positive correlation between patch size and dispersal probability emerges. However, a minimum patch size is necessary to allow for local adaptation of dispersal strategies within patches. Beyond this minimum patch area the difference in mean dispersal distance between center and edge increases linearly with patch radius, but the intensity of local adaptation depends on the dispersal kernel. Except for global and nearest neighbour dispersal, the evolved spatial pattern are qualitatively similar for both, mean dispersal probability and distance. We conclude, that inspite of the gene-flow originating from dispersal local adaptation of dispersal strategies is possible if a habitat is of sufficient size. This presumably holds for any realistic type of dispersal kernel.
Abstract: Background Social insects show considerable variability not only in social organisation but also in the temporal pattern of nest cycles. In annual eusocial sweat bees, nest cycles typically consist of a sequence of distinct phases of activity (queen or workers collect food, construct, and provision brood cells) and inactivity (nest is closed). Since the flight season is limited to the time of the year with sufficiently high temperatures and resource availability, every break reduces the potential for foraging and, thus, the productivity of a colony. This apparent waste of time has not gained much attention. Results We present a model that explains the evolution of activity breaks by assuming differential mortality during active and inactive phases and a limited rate of development of larvae, both reasonable assumptions. The model predicts a systematic temporal structure of breaks at certain times in the season which increase the fitness of a colony. The predicted pattern of these breaks is in excellent accordance with field data on the nest cycle of the halictid Lasioglossum malachurum. Conclusion Activity breaks are a counter-intuitive outcome of varying mortality rates that maximise the reproductive output of primitively eusocial nests.
The complexity of membership problems for finite recurrent systems and minimal triangulations
(2006)
The dissertation thesis studies the complexity of membership problems. Generally, membership problems consider the question whether a given object belongs to a set. Object and set are part of the input. The thesis studies the complexity of membership problems for two special kinds of sets. The first problem class asks whether a given natural number belongs to a set of natural numbers. The set of natural numbers is defined via finite recurrent systems: sets are built by iterative application of operations, like union, intersection, complementation and arithmetical operations, to already defined sets. This general problem implies further problems by restricting the set of used operations. The thesis contains completeness results for well-known complexity classes as well as undecidability results for these problems. The second problem class asks whether a given graph is a minimal triangulation of another graph. A graph is a triangulation of another graph, if it is a chordal spanning supergraph of the second graph. If no proper supergraph of the first graph is a triangulation of the second graph, the first graph is a minimal triangulation of the second graph. The complexity of the membership problem for minimal triangulations of several graph classes is investigated. Restricted variants are solved by linear-time algorithms. These algorithms rely on appropriate characterisations of minimal triangulations.
A hitherto unresolved problem is how workers are prevented from reproducing in large insect societies. The queen informs about her fertility and health which ensures sufficient indirect fitness benefits for workers. In the ant Camponotus floridanus, I found such a signal located on eggs of highly fertile queens. Groups of workers were regularly provided with different sets of brood. Only in groups with queen eggs workers refrain from reproducing. Thus, the eggs seem to inform the workers about queen presence. The signal on queen eggs is presumably the same that enables workers to distinguish between queen and worker-laid eggs, latter are destroyed by workers. Queen and worker-laid eggs differ in their surface hydrocarbons in a similar way as fertile queens differ from workers in the composition of their cuticular hydrocarbons. When I transferred hydrocarbons from the queen cuticle to worker eggs the eggs were no longer destroyed, indicating that they now carry the signal. These hydrocarbons thus represent a queen signal that regulates worker reproduction in this species. But the signal is not present in all fertile queens. Founding queens with low egg-laying rates differ in the composition of cuticular hydrocarbons from queens with high productivity. Similar differences in the composition of surface hydrocarbons were present on their eggs. The queen signal develops along with an increasing fertility and age of the queen, and this is perceived by the workers. Eggs from founding queens were destroyed like worker eggs. This result shows that founding queens lack the appropriate signal. In these little colony foundations chemical communication of queen status may not be necessary to prevent workers from reproducing, since workers may benefit more from investing in colony growth and increased productivity of large colonies rather than from producing male eggs in incipient colonies. If the queen is missing or the productivity of the queen decreases, workers start laying eggs. There is some evidence from correlative studies that, under queenless conditions, worker police each other because of differences in individual odors as a sign of social status. It can be expressed as either aggressive inhibition of ovarian activity, workers with developed ovaries are attacked by nest-mates, or destruction by worker-laid eggs. I found that in C. floridanus workers, in contrast to known studies, police only by egg eating since they are able to discriminate queen- and worker-laid eggs. Workers with developed ovaries will never attacked by nest-mates. This is further supported by qualitative and quantitative differences in the cuticular hydrocarbon profile of queens and workers, whereas profiles of workers with and without developed ovaries show a high similarity. I conclude that workers discriminate worker eggs on the basis of their hydrocarbon profile, but they are not able to recognize egg-laying nest-mates. Improving our knowledge of the proximate mechanisms of the reproductive division of labor in evolutionary derived species like C. floridanus will help to understand the evolution of extreme reproductive altruism involving sterility as a characteristic feature of advanced eusocial systems.
In this thesis affine-scaling-methods for two different types of mathematical problems are considered. The first type of problems are nonlinear optimization problems subject to bound constraints. A class of new affine-scaling Newton-type methods is introduced. The methods are shown to be locally quadratically convergent without assuming strict complementarity of the solution. The new methods differ from previous ones mainly in the choice of the scaling matrix. The second type of problems are semismooth system of equations with bound constraints. A new affine-scaling trust-region method for these problems is developed. The method is shown to have strong global and local convergence properties under suitable assumptions. Numerical results are presented for a number of problems arising from different areas.
Localization of BMP receptors in distinct plasma membrane domains and its impact on BMP signaling
(2006)
Endocytosis of growth factor receptors plays an important role in the activation and propagation as well as the attenuation of signaling pathways. Its malfunctioning can cause several pathologies, e.g. by controlling the level of receptors at the cell surface. BMPs are members of the TGF-ß superfamily and are involved in the regulation of proliferation, differentiation, chemotaxis and apoptosis. BMP signaling is initiated at two types of transmembrane serine/threonine kinases, BRI and BRII. BMP receptor activation occurs upon ligand binding to preformed complexes (PFCs) or BMP2-induced signaling complexes (BISCs) composed of BRI and BRII. Binding of BMP2 to PFCs results in activation of the Smad pathway, whereas BISCs initiate the activation of Smad-independent pathways via p38 resulting in the induction of Alkaline phosphatase (ALP). BMP receptor endocytosis has not been extensively studied and the potential role of localization to different regions of the plasma membrane in determining the signaling pathways activated by PFCs and BISCs was not explored so far. In the present work, the localization of BMP receptors in distinct membrane domains and the consequential impact on BMP signaling were investigated. By separating detergent-resistant membranes (DRMs) from cell lysates and subsequent gradient ultracentrifugation, it could be demonstrated that BRI and BRII cofractionate with cav-1, the marker protein of caveolae. Moreover, both receptor types interacted with cav-1 and showed a partially colocalization with cav-1 at the plasma membrane. Although these results point to a caveolar localization, BMP receptors cofractionated also with DRMs in cells exhibiting no caveolae, suggesting an additional non-caveolar raft localization. Beyond that, BRII could also be localized to clathrin-coated pits (CCPs) by means of immuno-electronmicroscopy studies. The second part of this thesis demonstrated that both membrane regions influence BMP signaling in distinct ways. Smad1/5 was shown to be phosphorylated independently of endocytic events at the cell surface. On the one hand, disruption of DRM regions by cholesterol depletion inhibited specifically BMP2-mediated ALP production, while Smad signaling was unaffected. On the other hand, inhibition of clathrin-mediated endocytosis by specific inhibitors affected BMP2-induced Smad signaling as well as the induction of ALP, suggesting that both Smad-dependent and Smad-independent signaling pathways are required for BMP2 induced ALP production. These findings propose an important regulatory impact of different endocytic routes and membrane regions on BMP signaling as well as that a distinct membrane localization of BMP receptors account for specific signaling properties initiated at PFCs or BISCs.
In this thesis two genes involved in causing neurodegenerative phenotypes in Drosophila are described. olk (omb-like), a futsch allele, is a micotubule associated protein (MAP) which is homologous to MAP1B and sws (swiss cheese) a serine esterase of yet unknown function within the nervous system. The lack of either one of these genes causes progressive neurodegeneration in two different ways. The sws mutant is characterized by general degeneration of the adult nervous system, glial hyperwrapping and neuronal apoptosis. Deletion of NTE (neuropathy target esterase), the SWS homolog in vertebrates, has been shown to cause a similar pattern of progressive neural degeneration in mice. NTE reacts with organophosphates causing axonal degeneration in humans. Inhibition of vertebrate NTE is insufficient to induce paralyzing axonal degeneration, a reaction called "aging reaction" is necessary for the disease to set in. It is hypothesized that a second "non-esterase" function of NTE is responsible for this phenomenon. The biological function of SWS within the nervous system is still unknown. To characterize the function of this protein several transgenic fly lines expressing different mutated forms of SWS were established. The controlled expression of altered SWS protein with the GAL4/UAS system allowed the analysis of isolated parts of the protein that were altered in the respective constructs. The characterization of a possible non-esterase function was of particular interest in these experiments. One previously described aberrant SWS construct lacking the first 80 amino acids (SWSΔ1-80) showed a deleterious, dominant effect when overexpressed and was used as a model for organophosphate (OP) intoxication. This construct retains part of its detrimental effect even without catalytically active serine esterase function. This strongly suggests that there is another characteristic to SWS that is not defined solely by its serine esterase activity. Experiments analyzing the lipid contents of sws mutant, wildtype (wt) and SWS overexpressing flies gave valuable insights into a possible biological function of SWS. Phosphatidylcholine, a major component of cell membranes, accumulates in sws mutants whereas it is depleted in SWS overexpressing flies. This suggests that SWS is involved in phosphatidylcholine regulation. The produced α-SWS antibody made it possible to study the intracellular localization of SWS. Images of double stainings with ER (endoplasmic reticulum) markers show that SWS is in great part localized to the ER. This is consistent with findings of SWS/ NTE localization in yeast and mouse cells. The olk mutant also shows progressive neurodegeneration but it is more localized to the olfactory system and mushroom bodies. Regarding specific cell types it seemed that specifically the projection neurons (PNs) are affected. A behavioral phenotype consisting of poor olfactory memory compared to wt is also observed even before histologically visible neurodegeneration sets in. Considering that the projection neurons connect the antennal lobes to the mushroom bodies, widely regarded as the "learning center", this impairment was expected. Three mutants where identified (olk1-3) by complementation analysis with the previously known futschN94 allele and sequencing of the coding sequence of olk1 revealed a nonsense mutation early in the protein. Consistent with the predicted function of Futsch as a microtubule associated protein (MAP), abnormalities are most likely due to a defective microtubule network and defects in axonal transport. In histological sections a modified cytoskeletal network is observed and western blots confirm a difference in the amount of tubulin present in the olk1 mutant versus the wt. The elaboration of neuronal axons and dendrites is dependent on a functional cytoskeleton. Observation of transport processes in primary neural cultures derived from olk1 mutant flies also showed a reduction of mitochondrial transport. Interaction with the fragile X mental retardation gene (dfmr1) was observed with the olk mutant. A dfmr1/ olk1 double mutant shows an ameliorated phenotype compared to the olk1 single mutant. tau, another MAP gene, was also shown to be able to partially rescue the olk1 mutant.
The investigation of multivariate generalized Pareto distributions (GPDs) in the framework of extreme value theory has begun only lately. Recent results show that they can, as in the univariate case, be used in Peaks over Threshold approaches. In this manuscript we investigate the definition of GPDs from Section 5.1 of Falk et al. (2004), which does not differ in the area of interest from those of other authors. We first show some theoretical properties and introduce important examples of GPDs. For the further investigation of these distributions simulation methods are an important part. We describe several methods of simulating GPDs, beginning with an efficient method for the logistic GPD. This algorithm is based on the Shi transformation, which was introduced by Shi (1995) and was used in Stephenson (2003) for the simulation of multivariate extreme value distributions of logistic type. We also present nonparametric and parametric estimation methods in GPD models. We estimate the angular density nonparametrically in arbitrary dimension, where the bivariate case turns out to be a special case. The asymptotic normality of the corresponding estimators is shown. Also in the parametric estimations, which are mainly based on maximum likelihood methods, the asymptotic normality of the estimators is shown under certain regularity conditions. Finally the methods are applied to a real hydrological data set containing water discharges of the rivers Altmühl and Danube in southern Bavaria.
Summary Timber harvesting is currently the most common commercial utilisation activity in tropical forests. Assessing the effects of logging on different aspects of biodiversity and general ecosystem properties is hence of prime importance if the few remaining areas of intact tropical forest are to be protected effectively and efficiently. Tropical amphibian communities are an appropriate model system for studies on the impacts of human-induced environmental changes on the dynamics of complex biological systems. This thesis elaborates on patterns of diversity changes in tropical forest amphibian communities facing habitat alterations associated with selective logging in two globally important eco-regions (Côte d’Ivoire, Upper Guinea, West Africa and Guyana, the Guiana Shield, northern South America). The thesis is organised along two main themes. After a general introduction, a section on general methodology and an introduction to the model systems studied, the first theme moves from general patterns to underlying processes. A second theme running through both chapters carries from undisturbed systems to disturbed systems. A final section integrates findings and addresses implications for conservation management of anthropogenically altered tropical forests. Several case studies at the species- population and community level are being presented and data on the direct and indirect impacts of anthropogenic habitat alteration on respective organizational levels are provided. A key statement that is stressed on throughout the studies is the fact that common measures of diversity, such as species richness and species-diversity only inadequately reflect processes of diversity change following anthropogenic disturbance. They also fail to describe actual impacts on the dynamics of complex biological systems. It is argued that commonly used measures produce an incoherent and insufficient picture of diversity patterns and the underlying processes that shape these patterns. Thus, an understanding of higher levels of diversity, such as β-diversity and functional diversity (and hence compositional patterns) appears to be the key to effectively mitigating the impacts of human-induced disturbance on amphibian communities. It is shown that the predictability of amphibian community composition depends on the respective level of anthropogenic disturbance imposed on a particular habitat. Hence, human activities that lead to changes in the structure of a forest, such as logging, not only alter simple system descriptors, such as the number of species in a given community, but rather alter the dynamics of the entire system. In this context, functional diversity is shown to be an important aspect underlying the actual mechanism that leads to the observed change of predictability patterns. Functional differences between species, rather than number of species per se appear to be the decisive factor in sustaining desirable ecosystem states and thus in maintaining important ecosystem services. Because biological diversity appears to play a substantial role in ecosystem resilience required to safeguard essential ecosystem functions in the face of environmental change, the thesis calls for a critical revision of common diversity assessments approaches. The studies advocate the reconsideration of the uncritical use of widespread measures and descriptors of biodiversity on grounds of inconsistent patterns found throughout numerous studies, including those presented herein.
With the progress in sequencing of the honey bee genome new data become available which allows the search and identification of genes coding for homologous proteins found in other organism. Two genes coding for c-type lysozymes were identified in the genome of A. mellifera through an online-based BLAST search. Expression of both intron-less genes seems not to be under the regulatory control of either of the two pathways involved in humoral insect immunity, i.e. Toll and Imd, since no NF-κB transcription factor binding sites are found upstream of the genes. The encoded Lys-1 and Lys-2 are 157 and 143 amino acid long, respectively, and share a sequence similarity of 90%. Further in silico analysis revealed a signal peptidase cleavage site at the N-terminus of each amino acid sequence, strongly suggesting a secretion of the enzymes into the surrounding environment of the producing cells. Sequence alignments of both amino acid sequences with other c-type lysozymes identified the highly conserved active site glutamic acid (Glu32) as well as eight highly conserved cysteine residues. However, an important aspartic acid (Asp50) in the active site that helps to stabilize a substrate intermediate during catalysis is replaced by a serine residue in the lysozymes of A. mellifera. The replacement of the active site aspartic acid in the honey bee lysozymes suggests a different catalytic mechanism and/or a different substrate-specificity in respect to other c-type lysozymes. Furthermore, 3D-models of Lys-1 and Lys-2 were generated based on the sequence similarity of A. mellifera lysozymes with other c-type lysozymes. The published 3D structure of the lysozyme from the silkmoth Bombyx mori, which shares the highest sequence similarity of all available structures with A. mellifera lysozymes, was used as template for the construction of the 3D-models. The models of Lys-1 and Lys-2 suggest that both enzymes resemble, in large part, the structure of B. mori lysozyme. In order to identify the set of AMPs in the hemolymph of A. mellifera, hemolymph of immunized bees was analyzed. Applying SDS-polyacrylamide gel electrophoresis and mass spectrometry on hemolymph from immunized bees, three out of the four peptides were identified, i.e. abaecin, defensin 1 and hymenoptaecin. Furthermore, Lys-2 was identified in the hemolymph by mass spectrometry, conclusively demonstrating the presence of a lysozyme in the hemolymph of A. mellifera for the first time. However, the protein levels of Lys-2 were not affected by bacterial injection, suggesting that the gene expression of the putative antibacterial protein is not under the regulatory control of the Imd and/or Toll pathway. Besides the abovementioned antimicrobial peptides, the 76 kDa large transferrin was also identified. Transferrin is an iron-binding protein that has been implicated in innate immunity in the honey bee. Furthermore, the effect of pathogenic dose, the timeline of peptide induction and the age-related accumulation of the aforementioned AMPs were studied. The intensity of expression of the antimicrobial peptides, abaecin, defensin 1, and hymenoptaecin as well as transferrin increased proportionally with the amount of bacteria injected into the hemocoel. No such effect was observed for the protein levels of Lys-2. Furthermore, up-regulation of the three antibacterial peptides and transferrin was observed within the first 24 h following infection with E. coli (gram-). Infection with the gram+ bacterium Micrococcus flavus resulted in high and moderate protein levels for transferrin and abaecin, respectively, whereas hardly any accumulation of hymenoptaecin was observed, indicating that the gene expression of abaecin and transferrin is somehow positively correlated, and would suggest a shared regulatory pathway that differs from that of hymenoptaecin. Although bacterial infections didn’t seem to stimulate the production of Lys-2, different concentrations in the hemolymph were observed in bees of different ages, suggesting a correlation between the expression of Lys-2 and the age-related division of labor of adult worker honey bees, also known as age polyethism. The results further allow a proposed causal connection between the age-dependent accumulation of Lys-2 and the hemolymph titer of the gonotrophic hormone juvenile hormone, which is the “behavioral pacemaker” in adult honey bees.
The RAF family of protein kinases consists of three members, A-RAF, B-RAF and C-RAF. Unlike the other isotypes, B-RAF has been found to have an important function for normal development of the central nervous system (CNS), because newly generated embryonic neurons lacking B-RAF cannot respond to survival factors and undergo cell death in vitro. A second cell lineage affected by the absence of B-RAF are endothelial cells and their death leads to internal bleedings and lethality of B-RAF-/- mice between embryonic day 10.5 (E10.5) and E12.5 precluding an opportunity to further analyze neural B-RAF function at a later stage. In contrast to B-RAF-/- mice, B-RAFKIN/KIN mice, which are B-RAF deficient but express a chimeric protein consisting of the unique N terminus of B-RAF and all the domains of A-RAF in the B-RAF gene locus, survive after midgestation because their endothelial cells are protected from apoptosis. More importantly, overall prevention of abnormal neural apoptosis in the forebrain allows us to study proliferation- or differentiation-oriented function of B-RAF other than its survival effects in CNS development. The detailed investigation of B-RAFKIN/KIN animals was concentrated on cortical development. There were apparent cortical defects in B-RAFKIN/KIN forebrain: Loss of B-RAF led to severe reduction of Brn-2 expressing pyramidal projection neurons accompanied by a disruption of dendrite formation in the upper layers. In further analysis, BrdU labelling experiments showed that from E14.5 to E16.5 cell proliferation in the ventricular zone of the mutant mice was reduced and that the late-born cortical neurons failed to migrate properly. While the proliferation defect of cortical progenitors was associated with reduced ERK activation, the mechanism causing impaired neuronal migration remains to be determined. Our hypothesis is that the subcellular localization of phospho-ERK may be altered in migrating cortical neurons in B-RAFKIN/KIN mice. To confirm in vivo function of B-RAF and further study unknown roles in embryonic neurogenesis as well as other morphogenesis, conditional B-RAF knockouts would be the ideal models, which can efficiently avoid embryonic lethality, prevent unwanted pleiotropic side effects and exclude accumulative compensatory developmental changes from the earliest developmental stage on, through the deletion of genetic material/gene function in selected cells at a specific time. The use of site-specific recombinases such as Cre and the successful development of the reversible tetracycline-based switch have provided powerful venues for creating conditional loss-of-function mouse models. Generation of tetracycline-regulated B-RAF and floxed B-RAF mouse embryonic stem (ES) cell lines was performed. Up to now, high-grade chimeric mice were obtained after blastocyst injection of the modified ES cell clones. The germline transmission from these chimeric mice is currently under investigation. When either of conditional mouse lines is ready, detailed examination in their CNS development would be done to reveal how B-RAF plays a real role for normal development of the nervous system.
The hydrophosphination reaction offers an important synthesis method for the building of primary, secondary and tertiary phosphines. In this work we report the syntheses of different primary phosphine complexes of iron and ruthenium. Also their reactivity in hydrophosphination reaction and the influence of diverse ligands, for example bidentate phosphine ligand and hemilablie ligand, were studied.
This work deals with channel-tunnel dependent multidrug efflux pumps and type I secretion systems, more concrete with the improved classification of the adaptor protein family, the characterization of the TolC-homologue protein HI1462 of Haemophilus influenzae, and the molecular characterization of the interaction between TolC and AcrA of Escherichia coli.
This thesis is concerned with numerical methods for solving nonlinear and mixed complementarity problems. Such problems arise from a variety of applications such as equilibria models of economics, contact and structural mechanics problems, obstacle problems, discrete-time optimal control problems etc. In this thesis we present a new formulation of nonlinear and mixed complementarity problems based on the Fischer-Burmeister function approach. Unlike traditional reformulations, our approach leads to an over-determined system of nonlinear equations. This has the advantage that certain drawbacks of the Fischer-Burmeister approach are avoided. Among other favorable properties of the new formulation, the natural merit function turns out to be differentiable. To solve the arising over-determined system we use a nonsmooth damped Levenberg-Marquardt-type method and investigate its convergence properties. Under mild assumptions, it can be shown that the global and local fast convergence results are similar to some of the better equation-based method. Moreover, the new method turns out to be significantly more robust than the corresponding equation-based method. For the case of large complementarity problems, however, the performance of this method suffers from the need for solving the arising linear least squares problem exactly at each iteration. Therefore, we suggest a modified version which allows inexact solutions of the least squares problems by using an appropriate iterative solver. Under certain assumptions, the favorable convergence properties of the original method are preserved. As an alternative method for mixed complementarity problems, we consider a box constrained least squares formulation along with a projected Levenberg-Marquardt-type method. To globalize this method, trust region strategies are proposed. Several ingredients are used to improve this approach: affine scaling matrices and multi-dimensional filter techniques. Global convergence results as well as local superlinear/quadratic convergence are shown under appropriate assumptions. Combining the advantages of the new methods, a new software for solving mixed complementarity problems is presented.
Herbivorous insects are the major link between primary producers and a multitude of animals at higher trophic levels. Elucidating the causes and consequences of their distribution patterns in the "green world" is thus essential for our understanding of numerous ecological processes on multiple spatial scales. We can ask where and why a certain herbivore can be found in the landscape, within the habitat, on which plant within the habitat and finally, where on that plant. Depending on spatial scale the distribution of herbivores is shaped by different processes (fitness considerations, physiological abilities, population dynamics, dispersal behavior, history of the landscape etc.). Scaling down from fragmented landscapes to individual host plants this thesis analyzes the distribution patterns of the strictly monophagous herbivore Cassida canaliculata Laich. (Coleoptera: Chrysomelidae), which feeds and oviposits exclusively on meadow sage, Salvia pratensis L. (Lamiales: Lamiaceae), and compares it to those of the polyphagous tansy leaf beetle Galeruca tanaceti L. (Coleoptera: Chrysomelidae), which does not oviposit on its host plants, but on dry non-host structures. The specialist Cassida canaliculata depended on all spatial scales (fragmented landscape, microhabitat and host plant individual) mainly on the distribution and quality of its single host plant species Salvia pratensis, whereas enemy-free-space - i.e. avoidance of parasitism and predation of egg clutches, larvae, and pupae - seemed to influence oviposition site choice only on the scale of the host plant individual. On this spatial scale, offspring of Cassida canaliculata had a higher chance of survival on large host plant individuals, which were also preferred for oviposition by the females. In contrast, the distribution patterns of the generalist Galeruca tanaceti was shaped by the interaction with its parasitoid regarding both microhabitat choice and egg distribution within individual host plants. On the microhabitat scale, beetles could escape from their parasitoids by ovipositing into high and dense vegetation. Regarding oviposition site choice within a host plant individual, females oviposited as high as possible in the vegetation and could thus reduce both the risk of parasitism and the probability of winter mortality. The results of my thesis show that the degree of specificity of a herbivore is of central importance for the resulting egg distribution pattern on all spatial scales.
Quantum chemical modeling of electron paramagnetic resonance (EPR) parameters, in combination with data from the modern high-field/high-frequency EPR (HF-EPR) techniques, constitutes an invaluable analytical tool for gaining insight into radical-protein interactions, which determine the specificity and directionality of the radical-mediated biochemical processes. This thesis reports a series of density functional (DFT) studies on EPR parameters of several biologically relevant radicals and a series of molecular devices inspired by radical-protein interaction in photosystem I (PS-I). We demonstrate our methodology’s accuracy and capacity to provide insight into the in vivo environment and reactivity of bioradicals. Our DFT approach for the calculation of electronic g-tensors has been applied to semiquinone radical anions in the different protein environments of photosynthetic reaction centers. Supermolecular models have been constructed, based on combined crystallographic and quantum chemical structure data, for the QA and QB active sites of bacterial reaction centers, for the A1 site of PS-I, as well as for ubisemiquinone in frozen 2-propanol. After scaling of the computed gx components by 0.92, both gx and gy components computed at gradient-corrected DFT level with accurate spin-orbit operators agree with HF-EPR reference data essentially to within experimental accuracy in all four systems studied. The influence of the various semiquinone-protein non-covalent interactions has been studied by successive removal of individual residues from the models. The effects of hydrogen bonding to the two carbonyl oxygen atoms of the semiquinones was found to be nonadditive, due to compensating spin-polarization effects. The effects of tryptophan-semiquinone -stacking are different for QA and A1 sites. This may be traced back to a different alignment of the interacting fragments and to differential spin polarization. In the next part of this work our DFT methodology has been applied to the semiquinone in the environment of the “high-affinity” binding site of quinol oxidase (QH site). Recent multi-frequency EPR studies of the QH binding site of quinol oxidase have suggested a very asymmetric hydrogen-bonding environment for the semiquinone radical anion state. Single-sided hydrogen bonding to the O1 carbonyl position was one of the proposals, which contrasts with some previous experimental indications. The density functional calculations of the EPR parameters (g-tensors, 13C, 1H, and 17O hyperfine tensors) for a wide variety of supermolecular model complexes have been used to provide insight into the detailed relations between structure, environment and EPR parameters of ubisemiquinone radical anions. A single-sided binding model is not able to account for the experimentally observed low gx component of the g-tensor nor for the observed magnitude of the asymmetry of the 13C carbonyl hyperfine coupling (HFC) tensors. Based on the detailed comparison between computation and experiment, a model with two hydrogen bonds to O1 and one hydrogen bond to O4 was suggested for the QH site, but a model with one more hydrogen bond on each side could not be excluded. Additionally, several general conclusions on the interrelations between EPR parameters and hydrogen bond patterns of ubisemiquinones in proteins were provided. The computational studies related to the mechanism of electron transfer in PS-I gave an impetus to the theoretical design, based on quantum-chemical calculations, of relatively small rotational molecular motors made up from intramolecularly connected dyads consisting of a quinone unit and a pyrrole or indole moiety. It was shown computationally for several systems, depending on the length and attachment points of the interconnecting chains, that a reduction of the quinone to the semiquinone radical anion or quinolate dianion states leads to a reversible intramolecular reorientation from a -stacked to a T-stacked arrangement. In the rearranged structures, a hydrogen bond from the pyrrole or indole N-H function to the semiquinone or quinolate -system is created upon reduction. In some systems, hydrogen bonds to the semiquinone or quinolate oxygen atoms are partly feasible and will be preferred over T-stacking. It was shown that the intramolecular interactions modify the quinone redox potentials. The electronic g-tensors computed for the semiquinone states reflected characteristically the presence and nature of hydrogen bonds to the semiquinone and were suggested as suitable EPR spectroscopic probes for the preferred structures. Intramolecular proton transfer was observed to be possible in the dianionic state. In contrast to semiquinones, which represent paramagnetic states of enzyme cofactors, glycyl radicals are genuine protein radicals. As a step towards an in-depth understanding of the EPR parameters of glycyl radicals in proteins, the hyperfine- tensors and, particularly, the g-tensor of N-acetylglcyl in the environment of a single crystal of N-acetylglycine have been studied by systematic state-of-the-art quantum chemical calculations on various suitable model systems. The quantitative computation of the g-tensors for such glycyl-derived radicals is a veritable challenge, mainly due to the very small g-anisotropy combined with a non-symmetrical, delocalized spin-density distribution and several atoms with comparable spin-orbit contributions to the g-tensors. The choice of gauge origin of the magnetic vector potential, and of approximate spin-orbit operators, both turn out to be more critical than found in previous studies of g-tensors for organic radicals. Environmental effects, included by supermolecular hydrogen-bonded models, were found to be moderate, due to a partial compensation between the influences from intramolecular and intermolecular hydrogen bonds. The largest effects on the g-tensor are caused by the conformation of the radical. The DFT methods employed systematically overestimate both the gx and gy components of the g-tensor. This is important for investigations on the protein-glycyl radicals (see next paragraph). The 1H and 13C hyperfine couplings depend only slightly on the supermolecular model chosen and appear less sensitive probes of detailed structure and environment. The number of enzymes that require a glycyl-based radical for their function is growing. Here we provide systematic quantum-chemical studies of spin-density distributions, electronic g-tensors, and hyperfine couplings of various models of protein-bound glycyl radicals. Similarly to what was found for N-acetylglycyl (see previous paragraph), the small g-anisotropy for this delocalized, unsymmetrical system presents appreciable challenges to state-of-the-art computational methodology. This pertains to the quality of structure optimization, as well as to the choice of spin-orbit Hamiltonian and gauge origin of the magnetic vector potential. Environmental effects due to hydrogen bonding are complicated and depend in a subtle fashion on the different intramolecular hydrogen bonding for different conformations of the radical. Indeed, the conformation has the largest overall effect on the computed g-tensors (less so on the hyperfine-tensors). We discuss this in the context of different g-tensors obtained by recent HF-EPR measurements for three different enzymes. Based on results of calibration study for N-acetylglycyl, we support that the glycyl radical observed for E.coli anaerobic ribonucleotide reductase (ARNR) has a fully extended conformation, which differs from those of the corresponding radicals in pyruvate formate-lyase (PFL) or benzylsuccinate synthase (BSS).
In this work we have developed the method of back-transfoprmation within the Douglas-Kroll-Hess (DKH) framework, which has simplified the picture-change consistent transformation of first-order property operators in the DKH approach, making the implementation feasible. This has enabled us to implement the first all-electron scalar relativistic calculations of hyperfine coupling tensors at DKH2 level. Furthemore we have presented a general, relativistic two-component DFT approach for the unrestricted calculations of electronic g-tensors, based on DKH Hamiltonian. Additionally we have derived the expressions for the evaluation of hyperfine structurs and two-component unrestricted treatment of g-tensor within the Resolution of Identity Dirac Kohn Sham method developed by Stanoslav Komorovsky and Michal Repisky in collaboration with other members of the group of V. G. Malkin. All these approaches have been extensively validated.
The analysis of real data by means of statistical methods with the aid of a software package common in industry and administration usually is not an integral part of mathematics studies, but it will certainly be part of a future professional work. The present book links up elements from time series analysis with a selection of statistical procedures used in general practice including the statistical software package SAS Statistical Analysis System). Consequently this book addresses students of statistics as well as students of other branches such as economics, demography and engineering, where lectures on statistics belong to their academic training. But it is also intended for the practician who, beyond the use of statistical tools, is interested in their mathematical background. Numerous problems illustrate the applicability of the presented statistical procedures, where SAS gives the solutions. The programs used are explicitly listed and explained. No previous experience is expected neither in SAS nor in a special computer system so that a short training period is guaranteed. This book is meant for a two semester course (lecture, seminar or practical training) where the first two chapters can be dealt with in the first semester. They provide the principal components of the analysis of a time series in the time domain. Chapters 3, 4 and 5 deal with its analysis in the frequency domain and can be worked through in the second term. In order to understand the mathematical background some terms are useful such as convergence in distribution, stochastic convergence, maximum likelihood estimator as well as a basic knowledge of the test theory, so that work on the book can start after an introductory lecture on stochastics. Each chapter includes exercises. An exhaustive treatment is recommended. This book is consecutively subdivided in a statistical part and an SAS-specific part. For better clearness the SAS-specific part, including the diagrams generated with SAS, always starts with a computer symbol, representing the beginning of a session at the computer, and ends with a printer symbol for the end of this session. This book is an open source project under the GNU Free Documentation License.
In this study pore forming proteins of the gram-negative bacteria B. burgdorferi, B. duttonii and E.coli were investigated. Therefore the study is subdivided into three parts. In the first part outer membrane preparation of three relapsing fever Borrelia were investigated. In the second part the putative TolC homologue BB0124 of B. burgdorferi, the Lyme borreliosis agent, was studied. In the last part the influence of point mutants within the greasy slide of the maltose specific porin (LamB) of E. coli were shown. In the first part of this study outer membrane preparations of three Borrelia relapsing fever strains have been studied for pore-forming activity in the black lipid bilayer assay. Histograms of conductance fluctuations were obtained from single-channel experiments with outer membrane preparations of B. hermsii, B. recurentis and B. duttonii. All strains had a different conductance fluctuation pattern with a broad range of single-channel conductance values varying from 0.5 nS – 11 nS. Common for all three strains was a high pore-forming activity at around 0.5 nS. Furthermore the proteins of the outer membrane of B. duttonii were separated by chromatographic methods. Some eluate fractions contained a channel-forming protein, which was forming stable channels with a single-channel conductance of 80 pS in 1 M KCl. Characterization of this channel showed that it is slightly anionic selective and voltage independent. The small single-channel conductance suggests that it is a specific pore. However, a substrate specificity could not be determined. In the second part, for the B. burgdorferi HB19 and p66 knock out strain HB19/K02, their outer membrane preparations were characterized in the black lipid bilayer assay. Comparing the histograms of single-channel conductions fluctuations of both strains showed no single-channel activity at 11.5 nS for the p66 knock out strain. This verifies earlier studies that P66 is a pore-forming protein in B. burgdorferi. Furthermore, one fraction obtained by anion exchange chromatography of the p66 knock out outer membrane protein preparation showed a uniform channel-forming activity with a single channel conductance of 300 pS. The electrophysically characterization of the 300 pS channel showed that it is not ionselective or voltage dependent. By mass spectrometry using peptide mass finger prints, BB0142 could be identified as the sole channel forming candidate in the active fraction. A BLAST search and a conserved domain search showed that BB0142 is a putative TolC homologue in B. burgdorferi. Furthermore the location of the bb0142 gene within the chromosome is in an operon encoding a multidrug efflux pump. In this study the expression of an outer membrane component of a putative drug efflux system of B. burgdorferi was shown for the first time. In the third part functional studies of the maltooligosaccharide-specific LamB channel were performed. The 3D-structure of LamB suggests that a number of aromatic residues (Y6, Y41, W74, F229, W358 and W420) within the channel lumen is involved in carbohydrate and ion transport. All aromatic residues were replaced by alanine (A) scanning mutagenesis. Furthermore, LamB mutants were created in which one, two, three, four and five aromatic residues were replaced to study their effects on ion and maltopentaose transport through LamB. The purified mutant proteins were reconstituted into lipid bilayer membranes and the single-channel conductance was studied. The results suggest that all aromatic residues provide some steric hindrance for ion transport through LamB. Highest impact is provided by Y6 and Y41, which are localized opposite to Y118, which forms the central constriction of the LamB channel. Stability constants for binding of maltopentaose to the mutant channels were measured using titration experiments with the carbohydrate. The mutation of one or several aromatic amino acids led to a substantial decrease of the stability constant of binding. The highest effect was observed when all aromatic amino acids were replaced by alanine because no binding of maltopentaose could be detected in this case. However, binding was again possible when Y118 was replaced by tryptophane (W). The carbohydrate-induced block of the channel function could also be used for the study of current noise through the different mutant LamB-channels. The analysis of the power density spectra of some of the mutants allowed the evaluation of the on- and off-rate constants (k1 and k-1) of carbohydrate binding to the binding-site inside the channels. The results suggest that both on- and off-rate constants were affected by the mutations. For most mutants k1 decreased and k-1 increased.
The prevention of restenosis after percutaneous coronary intervention is a major task for researchers and clinicians in cardiovascular pharmacology. Nearly 1.5 million PTCA are performed every year worldwide and, due to the implantation of stents, most of the cases can be treated successfully. 60% of those patients develop restenosis within 6 months. SMC migration and ECM deposition are known to be responsible for neointima formation. Among many processes, integrin initiated signalling events play a central role in SMC migration. Many integrins recognize a specific RGD sequence which is present in several ECM proteins and cell surface immunoglobulin super family molecules. Until now, there are various integrin antagonists such as antibodies, cyclic peptides, peptidomimetics, and non-peptides have been shown to interfere with such pathological situations indicating the importance of integrin initiated signalling pathways in SMC migration. Therefore, in this study SMC migration induced by ECM proteins was inhibited either using pharmacological inhibitor or by overexpressing the endogenous inhibitor of FAK by AAV vector system. In the first part of the thesis, the effect of integrin-ligand stimulation on hCASMCs was studied. The tyrosine phosphorylation of many cellular proteins was observed from serum starved hCASMCs replated on VN but not on PL coated plates. The major tyrosine phosphorylated protein was identified as FAK by immunoprecipitation and also phosphorylation was found at Tyr 397, the autophosphorylation site of FAK. Further, VN induced the dose dependent migration of hCASMCs in haptotaxis assay. The integrin v inhibitor was used to block those ECM stimulated integrin signalling pathways and cell migration. It inhibited the ECM stimulated tyrosine phosphorylation in a dose dependent manner. Interestingly, specific potent antagonism of integrin v abrogated both ECM induced haptotaxis and growth factor induced chemotaxis. The inhibition of migration is consistent with the replating assay results that show interference with integrin induced signalling pathways particularly the FAK tyrosine phosphorylation. The integrin v inhibitor also is able to interfere with hCASMC invasion through matrigel by reducing MMP-2 secretion. Importantly, integrin v inhibitor did not induce the apoptosis in hCASMCs. FAK is a key player in many cellular events and its involvement in cell migration was extensively studied in various cell types. The present study explored the function of FAK in hCASMC migration by overexpression of FRNK, the C-terminal domain of FAK. Overexpression of FRNK inhibited the in vitro SMC migration as well as the neointima formation in a porcine restenosis model in vivo. The last part of this thesis focused on the identification of putative binding partners for the N-terminal domain of FAK by bacterial two-hybrid screen. One of the interesting binding partners was a putative protein of 17.9 kDa. Its human homolog is AGS4, which acts as a GTPase activator. The preliminary results revealed that it is able to interact with N-FAK domain and its expression is high in haematopoietic cells. Taken together the above results suggest that integrin v and FAK are promising targets for inhibition of SMC migration. Disruption of FAK-mediated signalling pathways by a pharmacological inhibitor or by overexpression of FRNK, which acts as dominant-negative regulator, resulted in decreased migration of SMCs and thus can lead to reduction of neointima formation.
The massive remodeling of the heart tissue, as observed in response to pressure overload or myocardial infarction, is considered to play a causative role in the development of heart failure. Alterations in the heart architecture clearly affect the mechanical properties of the heart muscle, but they are rooted in changes at the cellular level including modulation of gene expression. Together with integrins, the transmembrane receptors linking the extracellular environment to the cytoskeleton, extracellular matrix (ECM) proteins and matricellular proteins are key components of the remodeling process in the heart. Therefore, this thesis was aimed at analysing the role of integrins in the regulation of gene expression and heart muscle performance during cardiac wound repair induced by pressure overload or myocardial infarction (MI). To investigate the contribution of integrin Beta 1, we characterised the response of mice with a conditional, cardiac-specific deletion of the integrin Beta 1 gene in an experimental model of pressure overload by aortic banding (AB). In particular, we measured physiological alterations and gene expression events in the stressed heart in the presence or absence of integrin Beta 1. Interestingly, mice containing a knock-out allele and the ventricular myocyte-specific conditional allele of the integrin Beta 1 gene were born and grew up to adulthood. Though these animals still exhibited minor amounts of integrin Beta1 in the heart (expressed by non-myocytes), these mice displayed abnormal cardiac function and were highly sensitive to AB. Whereas a compensatory hypertrophic response to pressure overload was observed in wildtype mice, the integrin Beta 1-deficient mice were not able to undergo heart tissue remodeling. Furthermore, ECM gene expression was altered and, in particular, the increased expression of the matricellular protein SPARC after AB was abolished in integrin Beta 1–deficient mice. Interestingly, we also found a transient upregulation of SPARC mRNA during heart remodeling after MI using cDNA macroarrays. Indeed, increased SPARC protein levels were observed starting at day 2 (2.55±0.21fold, p<0.01), day 7 (3.72±0.28 fold, p<0.01) and 1 month (1.9±0.16 fold, p<0.01) after MI, which could be abolished by using an integrin alpha v inhibitor in vivo. Immunofluorescence analysis of heart tissue demonstrated that the increased SPARC expression was confined to the infarcted area and occurred together with the influx of fibroblasts into the heart. In vitro, either TGF-Beta 1 or PDGF-BB stimulated SPARC expression by fibroblasts. Inhibition of integrin alpha v did not interfere with TGF-Beta1 or PDGF induced SPARC secretion as determined by ELISA assays or Western blot. However, secretion of TGF-Beta1 and PDGF-BB by cardiomyocytes was induced by vitronectin, a ligand of integrin alpha v, and this response was blocked by the integrin alpga v inhibitor. Functionally, SPARC modulated the migratory response of fibroblasts towards ECM proteins suggesting that the local deposition of SPARC following MI contributes to scar formation. Taken together, our combined in vivo and in vitro data demonstrate that several integrin subunits play critical roles during tissue remodeling in the injured heart. Integrin-dependent gene expression events such as the upregulation of SPARC following MI are critical to orchestrate the healing response. These processes appear to involve complex cross-talk between different cell types such as cardiomyocytes and fibroblasts to allow for locally confined scar formation. The elucidation of the sophisticated interplay between integrins, matricellular proteins such as SPARC, and growth factors will undoubtedly provide us with a better and clinically useful understanding of the molecular mechanisms governing heart remodeling.
Glucocorticoids (GCs) are small lipophilic compounds that mediate a plethora of biological effects by binding to the intracellular glucocorticoid receptor (GR) which, in turn, translocates to the nucleus and directly or indirectly regulates gene transcription. GCs remain the cornerstone in the treatment for a number of hematological malignancies, including leukemia, lymphoma and myeloma. Extensive literature suggests that the efficacy of GCs stems from their ability to mediate apoptosis. Despite the enormous strides made in our understanding of regulated cell death, the exact mechanism by which GCs cause apoptosis is still unknown. The data obtained so far provide strong evidence that gene transactivation by the GR underlies the initiation phase of GC-induced thymocyte apoptosis. Furthermore, the multicatalytic proteasome, several members of the Bcl-2 family, changes in calcium flux as well as caspases have been identified as important players in the execution phase of GC-mediated cell death. However, the exact sequence of events in this process still remains elusive. A major problem of the current discussion arises from the fact that different cell types, such as thymocytes, peripheral T cells and lymphoma cells are compared without acknowledging their different characteristics and gene expression profiles. Although it is generally assumed that GCs induce apoptosis via a conserved mechanism, this is not supported by any data. In other words, it is possible that thymocytes, peripheral T cells and lymphoma cells may undergo cell death along different pathways. We therefore wondered whether a unique signal transduction pathway is engaged by GCs to initiate and execute cell death in all types of T lymphocytes or whether distinct pathways exist. Therefore, we compared the role of the proteasome, various caspases, the lysosomal compartment and other factors in GC-induced apoptosis of murine thymocytes and peripheral T cells as well as T-ALL lymphoma cells. Our findings show that the initiation phase of GC-induced apoptosis is similar irrespective of the differentiation state of the cell. Apoptosis in both thymocytes and peripheral T cells is mediated by the GR and depends on gene transcription. In contrast, the execution phase significantly differs between thymocyte and peripheral T cells in its requirement for a number of signal transduction components. Whilst in thymocytes, the proteasome, caspases 3, 8 and 9 as well as cathepsin B play an important role in GC-induced apoptosis, these factors are dispensable for the induction of cell death in peripheral T cells. In contrast, changes in the expression and intracellular location of Bcl-2 family members do not appear to contribute to GC-induced apoptosis in either cell type. Importantly, our observation that GC treatment of thymocytes leads to an activation of the lysosomal protease cathepsin B and that this is an essential step in the induction of cell death by GCs, is the first indication that a lysosomal amplification loop is involved in this process. Analysis of GC-induced apoptosis in several T-ALL cell lines further indicates that the signaling pathway induced by GCs in thymocytes but not in peripheral T cells is shared by all lymphoma cell-types analyzed. Given the therapeutic importance of high-dose GC-therapy for the treatment of hematological malignancies, this finding could potentially form a basis for new anti-cancer strategies in the future, which specifically target tumor cells whilst leaving peripheral T cells of patients untouched.
Amphibian communities of the dry forest of Western Madagascar : taxonomy, ecology and conservation
(2006)
The amphibian fauna of the Kirindy dry forest in western Madagascar Abstracts of chapter 5 and 6 Living apart together – patterns of tadpole communities in a western Madagascan dry forest Whether communities are established in a deterministic or in a stochastic manner depends to a large degree on the spatial scale considered. In this study we use a tadpole community in the dry forest of western Madagascar to show that when within-site habitat diversity is considered, communities may also differ in two community parameters (species composition and species richness) within one geographic scale. Forest ponds and riverbed ponds are two types of breeding habitat that are both used by anurans but that differ generally in their temporal availability, predation pressure, and environmental characteristics. In forest ponds, tadpole communities were very predictable by the physical properties of the ponds and by their vegetation characteristics. In contrast, the riverbed communities were not predictable. We offer two hypotheses to explain this phenomenon. This study clearly demonstrates differing patterns in community organization in two natural habitats within one site, and therefore, highlights the importance of considering local conditions and within-site habitat diversity in community studies. Modeling the habitat use of an endangered dry-forest frog from Western Madagascar A crucial factor for the successful reproduction and thus conservation of an amphibian species is the availability of suitable waters as breeding sites. In this chapter, we examine the use of breeding sites of an endangered, local endemic frog of Western Madagascar, Aglyptodactylus laticeps, over a three year period. Logistic regression was used to model the relationship between the species’ breeding habitat use and environmental variables. This model was aimed to be predictive, rather than explanatory, and only environmental variables were included that are assessable in a time and cost effective manner, and that can therefore be used as an easy-to-use management tool in applied conservation. On the local scale of the Kirindy concession, A. laticeps is restricted to forest with a relatively low degree of disturbance and closed canopy cover. The model identified three environmental variables that suffice to satisfactorily predict the use of respective breeding sites, namely leaf litter, vegetation coverage and surface water plants. Based on these results, we present recommendations for the conservation management of this frog. Furthermore, the presence or absence of this species within its natural range indicates the relative degree of environmental integrity of its habitat, and we therefore consider this species as a suitable indicator species of temporary aquatic habitats within the dry forest that are characterized by a low water permanency and high leaf litter coverage. This study demonstrates that models constructed from basic ecological knowledge of relevant species may serve as valuable management tools in applied conservation.
Study of Omp85 Family Proteins YaeT and YtfM and Multidrug Export Machineries in Escherichia coli
(2006)
In this study the Omp85 family proteins YaeT and YtfM of Escherichia coli were investigated by using biochemical and electrophysiological methods as well as bioinformatical and structural analysis. In addition, knock-out strains were constructed to further study the relevance of these proteins in vivo. The prediction that Omp85 proteins are composed of two domains, a periplasmic amino-terminal POTRA (polypeptide translocation associated) domain and a carboxy-terminal domain anchoring these proteins in the outer membrane, was confirmed by the construction of mutants. It could be shown that the carboxy-terminal part of the proteins is able to insert into the outer bacterial membrane, even if the POTRA domain is removed. Furthermore, pore-forming activity in the black-lipid bilayer was observed for both full-length proteins as well as their carboxy-terminal membrane located parts. The channels formed by both proteins in the black lipid bilayer showed variable single channel conductance states rather than a defined value for conductance. In 1M KCl, e.g. YaeT forms pores with a channel conductance of 100 to 600 pS containing a most abundant value at 400 pS. This variability is at least reasonable for YaeT due to a prerequisite flexibility of its channel for OMP insertion. YaeT was identified to form a cation selective, YtfM an anion selective channel, which is less pH dependent than YaeT. Another feature of the YaeT channel is that its selectivity and conductance is influenced by charged detergent molecules indicating an accumulation of these molecules in hydrophobic pockets inside the compact channel. YaeT revealed heat-modifiable mobility in SDS-PAGE which is characteristic for β-barrel OMPs, whereas YtfM did not show this behaviour. This result could be explained by sequence alignment and structural comparison of YaeT and YtfM via CD and FTIR spectra displaying much higher β-strand content for the carboxy-terminal part of YaeT compared to YtfM. Since the carboxy-terminal parts were shown to have pore forming ability and are inserted in the OM in vivo, the substitution of the essential protein YaeT by its carboxy-terminal mutant was attempted in a yaeT knock-out strain. The carboxy-terminal half of YaeT was not sufficient to compensate depletion of the full-length protein indicating an important role of the amino-terminus for cell viability. In contrary, YtfM is shown to be a non-essential protein and lack of YtfM had no effects on the composition and integrity of the OM. However, chromosomal deletion of ytfM remarkably reduced the growth rate of cells. This study provides the first detailed investigation of the structure of YaeT and describes its electrophysiological behaviour, which could be a basis for further studies of YaeT and its substrate proteins. Furthermore, YtfM was characterised and its in vivo function was investigated revealing YtfM as the second Omp85 family protein of importance in E. coli. In a second part of this study assembly and function of multidrug efflux pumps were investigated. Drug efflux pumps are tripartite export machineries in the cell envelope of Gram-negative bacteria conferring multidrug resistance and therefore causing severe problems for medical treatment of diseases. Protein structures of all three efflux pump components are solved, but the exact interaction sites are still unknown. Assembly of a hybrid exporter system composed of the Pseudomonas aeruginosa channel tunnel OprM, the E. coli adaptor protein AcrA and its associated transporter AcrB could be shown by chemical cross-linking, even though this efflux pump is not functional. Exchange of the hairpin domain of AcrA by the corresponding hairpin from the adaptor protein MexA of P. aeruginosa restored functionality tested by antibiotic sensitivity assays. This shows the importance of the MexA hairpin domain for functional interaction with the OprM channel tunnel. Interestingly, the hybrid protein was also able to assemble with TolC as outer membrane component to form a functional efflux pump indicating a higher flexibility of TolC compared to OprM concerning interaction partners. Based on these results, an interaction model of the hairpin domain and the channel tunnel on molecular level for AcrA and TolC as well as MexA and OprM, respectively, is presented. This model provides a basis for directed mutagenesis to reveal the exact contact sites of the hairpin of the adapter protein and the outer membrane component
In this work heterostructures based on the half-Heusler alloy NiMnSb have been fabricated and characterized. NiMnSb is a member of the half-metallic ferromagnets, which exhibit an electron spin-polarization of 100% at the Fermi-level. For fabrication of these structures InP substrates with surface orientations of (001),(111)A and (111)B have been used. The small lattice mismatch of NiMnSb to InP allows for pseudomorphic layers, the (111) orientation additionally makes the formation of a half-metallic interface possible. For the growth on InP(001), procedures for the substrate preparation, growth of the lattice matched (In,Ga)As buffer layer and of the NiMnSb layer have been developed. The effect of flux-ratios and substrate temperatures on the MBE growth of the buffer as well as of the NiMnSb layer have been investigated and the optimum conditions have been pointed out. NiMnSb grows in the layer-by-layer Frank-van der Merwe growth mode, which can be seen by the intensity oscillations of the RHEED specular spot during growth. RHEED and LEED measurements show a flat surface and a well-defined surface reconstruction. High resolution x-ray measurements support this statement, additionally they show a high crystalline quality. Measurements of the lateral and the vertical lattice constant of NiMnSb films on (001) oriented substrates show that layers above a thickness of 20nm exhibit a pseudomorphic as well as a relaxed part in the same layer. Whereas layers around 40nm show partly relaxed partitions, these partitions are totally relaxed for layers above 100nm. However, even these layers still have a pseudomorphic part. Depth-dependent x-ray diffraction experiments prove that the relaxed part of the samples is always on top of the pseudomorphic part. The formation and propagation of defects in these layers has been investigated by TEM. The defects nucleate early during growth and spread until they form a defect network at a thickness of about 40nm. These defects are not typical misfit dislocations but rather antiphase boundaries which evolve in the Mn/Sb sublattice of the NiMnSb system. Dependent on the thickness of the NiMnSb films different magnetic anisotropies can be found. For layers up to 15nm and above 25nm a clear uniaxial anisotropy can be determined, while the layers with thicknesses in between show a fourfold anisotropy. Notably the easy axis for the thin layers is perpendicular to the easy axis observed for the thick layers. Thin NiMnSb layers show a very good magnetic homogeneity, as can be seen by the very small FMR linewidth of 20Oe at 24GHz. However, the increase of the linewidth with increasing thickness shows that the extrinsic damping gets larger for thicker samples which is a clear indication for magnetic inhomogeneities introduced by crystalline defects. Also, the magnetic moment of thick NiMnSb is reduced compared to the theoretically expected value. If a antiferromagnetic material is deposited on top of the NiMnSb, a clear exchange biasing of the NiMnSb layer can be observed. In a further step the epitaxial layers of the semiconductor ZnTe have been grown on these NiMnSb layers, which enables the fabrication of NiMnSb/ZnTe/NiMnSb TMR structures. These heterostructures are single crystalline and exhibit a low surface and interface roughness as measured by x-ray reflectivity. Magnetic measurements of the hysteresis curves prove that both NiMnSb layers in these heterostructures can switch separately, which is a necessary requirement for TMR applications. If a NiMn antiferromagnet is deposited on top of this structure, the upper NiMnSb layer is exchange biased by the antiferromagnet, while the lower one is left unaffected. Furthermore the growth of NiMnSb on (111) oriented substrates has been investigated. For these experiments, InP substrates with a surface orientation of (111)A and (111)B were used, which were miscut by 1 to 2° from the exact orientation to allow for smoother surfaces during growth. Both the (In, Ga)As buffer as well as the NiMnSb layer show well defined surface reconstructions during growth. X-ray diffraction experiments prove the single crystalline structure of the samples. However, neither for the growth on (111)A nor on (111)B a perfectly smooth surface could be obtained during growth, which can be attributed to the formation of pyramid-like facets evolving as a result of the atomic configuration at the surface. A similar relaxation behavior as NiMnSb layers on (001) oriented InP could not be observed. RHEED and x-ray diffraction measurements show that above a thickness of about 10nm the NiMnSb layer begins to relax, but remnants of pseudomorphic parts could not be found. Magnetic measurements show that the misorientation of the substrate crystal has a strong influence on the magnetic anisotropies of NiMnSb(111) samples. In all cases a uniaxial anisotropy could be observed. The easy axis is always aligned parallel to the direction of the miscut of the substrate.
Sugar reward learning in Drosophila : neuronal circuits in Drosophila associative olfactory learning
(2006)
Genetic intervention in the fly Drosophila melanogaster has provided strong evidence that the mushroom bodies of the insect brain act as the seat of memory traces for aversive and appetitive olfactory learning (reviewed in Heisenberg, 2003). In flies, electroshock is mainly used as negative reinforcer. Unfortunately this fact complicates a comparative consideration with other inscets as most studies use sugar as positive reinforcer. For example, several lines of evidence from honeybee and moth have suggested another site, the antennal lobe, to house neuronal plasticity underlying appetitive olfactory memory (reviewed in Menzel, 2001; Daly et al., 2004). Because of this I focused my work mainly on appetitive olfactory learning. In the first part of my thesis, I used a novel genetic tool, the TARGET system (McGuire et al., 2003), which allows the temporally controlled expression of a given effector gene in a defined set of cells. Comparing effector genes which either block neurotransmission or ablate cells showed important differences, revealing that selection of the appropriate effector gene is critical for evaluating the function of neural circuits. In the second part, a new engram of olfactory memory in the Drosophila projection neurons is described by restoring Rutabaga adenlylate cyclase (rut-AC) activity specifically in these cells. Expression of wild-type rutabaga in the projection neurons fully rescued the defect in sugar reward memory, but not in aversive electric shock memory. No difference was found in the stability of the appetitive memories rescued either in projection neurons or Kenyon cells. In the third part of the thesis I tried to understand how the reinforcing signals for sugar reward are internally represented. In the bee Hammer (1993) described a single octopaminergic neuron – called VUMmx1 – that mediates the sugar stimulus in associative olfactory reward learning. Analysis of single VUM neurons in the fly (Selcho, 2006) identified a neuron with a similar morphology as the VUMmx1 neuron. As there is a mutant in Drosophila lacking the last enzymatic step in octopamine synthesis (Monastirioti et al., 1996), Tyramine beta Hydroxylase, I was able to show that local Tyramine beta Hydroxylase expression successfully rescued sugar reward learning. This allows to conclude that about 250 cells including the VUM cluster are sufficient for mediating the sugar reinforcement signal in the fly. The description of a VUMmx1 similar neuron and the involvement of the VUM cluster in mediating the octopaminergic sugar stimulus are the first steps in establishing a neuronal map for US processing in Drosophila. Based on this work several experiments are contrivable to reach this ultimate goal in the fly. Taken together, the described similiarities between Drosophila and honeybee regarding the memory organisation in MBs and PNs and the proposed internal representation of the sugar reward suggest an evolutionarily conserved mechanism for appetitive olfactory learning in insects.
In this century new experimental and computational techniques are adding an enormous amount of information, revealing many biological mysteries. The complexities of biological systems still broach new questions. Till now the main approach to understand a system has been to divide it in components that can be studied. The upcoming new paradigm is to combine the pieces of information in order to understand it at a global level. In the present thesis we have tried to study infectious diseases with such a global ‘Systems Biology’ approach. In the first part the apoptosis pathway is analyzed. Apoptosis (Programmed cell death) is used as a counter measure in different infections, for example viral infections. The interactions between death domain containing proteins are studied to address the following questions: i) How specificity is maintained - showing that it is induced through adaptors, ii) how proliferation/ survival signals are induced during activation of apoptosis – suggesting the pivotal role of RIP. The model also allowed us to detect new possible interacting surfaces. The pathway is then studied at a global level in a time step simulation to understand the evolution of the topology of activators and inhibitors of the pathway. Signal processing is further modeled in detail for the apoptosis pathway in M. musculus to predict the concentration time course of effector caspases. Further, experimental measurements of caspase-3 and viability of cells validate the model. The second part focuses on the phagosome, an organelle which plays an essential role in removal of pathogens as exemplified by M. tuberculosis. Again the problem is addressed in two main sections: i) To understanding the processes that are inhibited by M. tuberculosis; we focused on the phospholipid network applying a time step simulation in section one, which plays an important role in inhibition or activation of actin polymerization on the phagosome membrane. ii) Furthermore, actin polymers are suggested to play a role in the fusion of the phagosome with lysosome. To check this hypothesis an in silico model was developed; we find that the search time is reduced by 5 fold in the presence of actin polymers. Further the effect of length of actin polymers, dimensions of lysosome, phagosome and other model parameter is analyzed. After studying a pathway and then an organelle, the next step was to move to the system. This was exemplified by the host pathogen interactions between Bordetella pertussis and Bordetella bronchiseptica. The limited availability of quantitative information was the crucial factor behind the choice of the model type. A Boolean model was developed which was used for a dynamic simulation. The results predict important factors playing a role in Bordetella pathology especially the importance of Th1 related responses and not Th2 related responses in the clearance of the pathogen. Some of the quantitative predictions have been counterchecked by experimental results such as the time course of infection in different mutants and wild type mice. All these computational models have been developed in presence of limited kinetic data. The success of these models has been validated by comparison with experimental observations. Comparative models studied in chapters 6 and 9 can be used to explore new host pathogen interactions. For example in chapter 6, the analysis of inhibitors and inhibitory paths in three organism leads to the identification of regulatory hotspots in complex organisms and in chapter 9 the identification of three phases in B. bronchiseptica and inhibition of IFN-γ by TTSS lead us to explore similar phases and inhibition of IFN-γ in B. pertussis. Further an important significance of these models is to identify new components playing an essential role in host-pathogen interactions. In silico deletions can point out such components which can be further analyzed by experimental mutations.
Data mining has proved its significance in various domains and applications. As an important subfield of the general data mining task, subgroup mining can be used, e.g., for marketing purposes in business domains, or for quality profiling and analysis in medical domains. The goal is to efficiently discover novel, potentially useful and ultimately interesting knowledge. However, in real-world situations these requirements often cannot be fulfilled, e.g., if the applied methods do not scale for large data sets, if too many results are presented to the user, or if many of the discovered patterns are already known to the user. This thesis proposes a combination of several techniques in order to cope with the sketched problems: We discuss automatic methods, including heuristic and exhaustive approaches, and especially present the novel SD-Map algorithm for exhaustive subgroup discovery that is fast and effective. For an interactive approach we describe techniques for subgroup introspection and analysis, and we present advanced visualization methods, e.g., the zoomtable that directly shows the most important parameters of a subgroup and that can be used for optimization and exploration. We also describe various visualizations for subgroup comparison and evaluation in order to support the user during these essential steps. Furthermore, we propose to include possibly available background knowledge that is easy to formalize into the mining process. We can utilize the knowledge in many ways: To focus the search process, to restrict the search space, and ultimately to increase the efficiency of the discovery method. We especially present background knowledge to be applied for filtering the elements of the problem domain, for constructing abstractions, for aggregating values of attributes, and for the post-processing of the discovered set of patterns. Finally, the techniques are combined into a knowledge-intensive process supporting both automatic and interactive methods for subgroup mining. The practical significance of the proposed approach strongly depends on the available tools. We introduce the VIKAMINE system as a highly-integrated environment for knowledge-intensive active subgroup mining. Also, we present an evaluation consisting of two parts: With respect to objective evaluation criteria, i.e., comparing the efficiency and the effectiveness of the subgroup discovery methods, we provide an experimental evaluation using generated data. For that task we present a novel data generator that allows a simple and intuitive specification of the data characteristics. The results of the experimental evaluation indicate that the novel SD-Map method outperforms the other described algorithms using data sets similar to the intended application concerning the efficiency, and also with respect to precision and recall for the heuristic methods. Subjective evaluation criteria include the user acceptance, the benefit of the approach, and the interestingness of the results. We present five case studies utilizing the presented techniques: The approach has been successfully implemented in medical and technical applications using real-world data sets. The method was very well accepted by the users that were able to discover novel, useful, and interesting knowledge.
In pursuit of a novel generation of devices, exploration of spin properties of the particles is needed. Spintronics is a modern field in physics which exploits spin properties to be used in addition to the charge degree of freedom. Since the conductivity mismatch problem presents a fundamental obstacle for electrical spin injection from a ferromagnetic metal into a diffusive semiconductor [SFM+00], other means for injecting spin-polarized carriers must be used. With a tunnel contact, it is possible to achieve a highly spin-polarized room-temperature tunnel injection [JWS+05]. We used a novel approach and applied magnetic RTDs for spin manipulation. In this work, properties of all-II-VI magnetic resonant tunneling diodes (RTDs), as applied to spintronics, were reported. Growth conditions were optimized to increase the peak-to-valley ratio, and the design of the RTDs was optimized for observation of spin related transport effects. When an external magnetic field was applied, spin manipulation became possible. Selforganized CdSe quantum structures were grown and investigated using optical means. After embedding them into a (Zn,Be)Se tunneling barrier, the properties were assessed by the resonant tunneling.
Helicobacter pylori (H. pylori) is a gram-negative, microaerophilic, spiral-shaped bacterium. It resides in the gastric mucous layer and epithelial lining of the stomach, often clustering at the junction of epithelial cells. H. pylori colonization usually occurs during childhood, and, when left untreated, generally persists for the host’s lifetime. Persistent H. pylori infection can cause chronic superficial gastritis and gastric duodenal ulcers, which is possibly linked to the development of gastric carcinoma and primary gastric lymphoma, especially of the mucosa-associated lymphoid tissue (MALT) type. It was recently defined as a class 1 carcinogen. The gastric inflammatory response to H. pylori infection is characterized by infiltration of the mucosa by neutrophils, T and B cells, plasma cells and macrophages. This reaction is initially induced by H. pylori attachment, followed by cytokine release by gastric epithelial cells. Epidemiological studies revealed that more than 50% of adults are infected with H. pylori all over the world. However, interestingly, only a subset of individuals develops serious H. pylori-related disease, while most infected individuals show no clinical symptoms. Gastric epithelial cells, like intestinal epithelial cells, express a subset of Toll-like receptors (TLRs) and similar pattern recognition receptors, which are important for the activation of the innate immune system. Bacterial components such as lipopeptides, peptidoglycan, LPS, flagellin, and CpG DNA are the ligands of TLRs. Thus, TLRs in gastric epithelial cells might be able to contribute to innate immune responses to H. pylori infection. However, there is scant knowledge about the mechanisms of innate immune response to acute and chronic H. pylori infection. This study is focused on host cell interaction with H. pylori flagellins, which are major components of the flagellar apparatus, and innate immune responses against them. The flagellins, which are essential for bacterial motility, are important for H. pylori to survive in the stomach mucus during the whole infectious cycle. Flagellins are known to act as the main determinant of many mucosal pathogenic bacteria that mediates proinflammatory signaling, including transcriptional factor NF-B activation via TLR5. In the first part of the study, we investigated the effects of H. pylori flagellins on TLR5 expression, NF-B activation and IL-8 production in various human intestinal and gastric epithelial cell lines by using Western blotting, semi-quantitative RT-PCR and ELISA. IL-8 is a potent neutrophil-activating chemokine expressed by gastric epithelial cells. When we stimulated the cells with the native form of or E. coli-expressed recombinant H. pylori flagellins, FlaA and FlaB, IL-8 was not induced in any case, while S. typhimurium flagellin (FliC) induced it significantly. H. pylori was able to modulate TLR5 protein expression and NF-B activation in epithelial cells regardless of the presence of flagellins. Having established the finding that H. pylori flagellins have unusually low immune-stimulatory properties, we further investigated to find out possible reasons why H. pylori flagellins are distinct from other flagellins of pathogenic bacteria in terms of immune-stimulatory activity. From amino acid sequence comparisons, we found that some regions in the terminal D0D1 protein domains of H. pylori flagellins are different from flagellins of other pathogenic bacteria. D0D1 is the domain which is known to interact with TLR5 in Salmonella FliC. To examine whether the differences endow H. pylori flagellins with low immune-stimulatory properties, we created several mutated H. pylori flagellins (FlaA and FlaB) by site-directed mutagenesis that contain one to four epitopes of Salmonella flagellin D0D1 domain amino acid sequences. The mutant flagellins expressed both in H. pylori and E. coli were used to determine their influence on TLR5-signaling mediators and cytokines, such as MAPkinases, (ERK, p38), NF-B, IL-8, and MIP-3. Salmonella FliC expressed in E. coli induced activation of p38, IB and NF-B leading to IL-8 and MIP-3 production in gastric epithelial cells. However, none of the H. pylori flagellin mutants activated MAP kinases or induced those cytokines. In a co-immunoprecipitation assay none of the recombinant wild type or mutated H. pylori flagellins showed any direct physical interaction with TLR5, while Salmonella FliC significantly co-precipitated with TLR5. Interestingly, we found H. pylori flagellins bind to the surface of gastric epithelial cells like FliC, although they do not bind to or stimulate TLR5. Based on the physical interaction of H. pylori flagellins and FliC with human gastric epithelial cells, we further analyzed transcriptional regulation by H. pylori flagellin in these host cells using microarray analysis. The result showed that H. pylori flagellins modulate host cell gene expression, and many of the identified regulation events overlap with the genes regulated by FliC. These findings imply that H. pylori flagellins do play a role in gene regulation of host cells probably through still unknown factors or receptors, although they do not trigger TLR5-related signaling pathways. The results of our study suggest that, in addition to the low immune-stimulatory activity of H. pylori LPS, the evolutionary reduction in stimulating activity of H. pylori flagellins on the local innate immune responses in the stomach in vivo might be a further strategy of this chronic mucosal pathogen to evade and minimize deleterious host responses, thereby promoting life-long persistence in the host, and possibly contributing to cancerogenesis.
The Mesosaurus Inland Sea covered, in the Late Paleozoic, vast areas (~5 Mio km2) of the SW-Gondwanan continental interior. Major depocentres are represented by the Karoo basins of SW-Africa and the Paraná Basin in South America. These areas were interconnected prior to the break-up of Gondwana and the subsequent opening of the South Atlantic Ocean. In Namibia and South Africa deposits of the Mesosaurus Inland Sea are preserved in the successions of the glacial Dwyka Group and the postglacial Ecca Group (Karoo Supergroup). These deposits comprise the major part of a 60-70 Ma depositional cycle and are the main focus of this study. The large-scale transgressive part of this cycle started in the Late Carboniferous with continental glacial deposits followed by marine glacial and postglacial inland sea deposits. During the Early Permian the Mesosaurus Inland Sea reached its greatest extent, which was accompanied by widespread deposition of Corg-rich sediments. The large scale regressive part is recorded by successions ranging from deep water offshore pelites and turbidite sandstones to shallow water shoreface and deltaic sandstones, deposited in a brackish environment. Shallow water inland sea sediments are in turn overlain by fluvio-lacustrine deposits, which are assigned to the Beaufort Group and form the upper part of the cycle. This successive change in the depositional environment from marine to brackish to freshwater is also reflected in the fossil record. During Dwyka times a marine association of the Gondwana faunal province was able to colonize parts of the Mesosaurus Inland Sea. Later, during lower Ecca times, the connection to the Panthalassan Ocean became insufficient to retain normal marine conditions, leading to strong faunal endemism in an isolated and brackish inland sea environ¬ment. The most well-known and widespread representatives of this endemic fauna are mesosaurid vertebrates and megadesmid bivalves. Numerous altered tuffs occur as interlayers within argillaceous sediments of the Dwyka and Ecca Group of southern Namibia. The vast majority of these altered tuffs are represented by soft and crumbly to hard and indurated, clay-mineral-rich, bentonitic layers. Another, much rarer type is represented by very hard, chert-like tuff layers, which are predominantly albitic in composition. Furthermore, tuff layers within the Gai-As Formation of the Huab area are rich in potassium feldspar and have a porcelain-like appearance. The diagenetically modified matrix is mainly crypto- to microcrystalline. Polished tuff specimen show, in some tuffs, plane lamination or bedding with two or more subunits forming a tuff layer. Some display a weakly developed lamination. Only in very rare cases were structures reminiscent of sedimentary micro-cross lamination observed. The sedimentary textures and structures of the tuffs indicate that they have been deposited mainly as distal ash-fall layers by suspension settling in water. Some may have also been deposited or modified under the influence of weak bottom currents. The primary, pyroclastic macro-components of the tuffs are mainly represented by crystals of quartz, plagio¬clase, and biotite. In some thin sections pseudo¬morphs after pyroxene or hornblende were observed. Euhedral zircon and apatite crystals were observed in almost every tuff. Vitric or formerly vitric macro-components are very rare. The matrix of the majority of the investigated tuffs is predominantly composed of clay minerals. However, the matrix of the tuffs originally consisted most probably of fine vitric ash particles. Soon after deposition the volcanic ash was diagenetically altered to smectitic clay minerals. At a later stage smectite was progressively replaced by illite under prograde conditions. Nowadays the matrix of the bentonitic tuffs is strongly illite-dominated and only in the softer tuff layers a minor smectite content can be detected. Both the primary macrocrystic components as well as the geochemistry of the altered tuffs indicate that their source magmas were mainly of intermediate composition. The abundance of splintery quartz and feldspar crystal fragments within the tuffs hints at a highly explosive plinian or phreatoplinian eruption style of the source volcanoes, which were most probably located within a subduction-related volcanic arc region along the southern margin of Gondwana. New single zircon U-Pb SHRIMP datings of tuff layers provide a much more reliable age control of the investigated sedimentary succession. U-Pb SHRIMP ages for tuff layers from the glaciogenic Dwyka Group in southwestern Africa range from 302.0 ± 3.0 to 297.1 ± 1.8 Ma. The basal part of the early post-glacial Prince Albert Formation is dated at around 290 Ma. SHRIMP ages for tuff layers from the upper part of the Prince Albert Formation, the Whitehill Formation, and the middle part of the Collingham Formation indicate that the Mesosaurus Sea reached its greatest extent at around 280 Ma.
The astronomical exploration at energies between 30\,GeV and $\lesssim$\,350\,GeV was the main motivation for building the \MAGIC-telescope. With its 17\,m \diameter\ mirror it is the worldwide largest imaging air-Cherenkov telescope. It is located at the Roque de los Muchachos at the Canary island of San Miguel de La Palma at 28.8$^\circ$\,N, 17.8$^\circ$\,W, 2200\,m a.s.l. The telescope detects Cherenkov light produced by relativistic electrons and positrons in air showers initiated by cosmic gamma-rays. The imaging technique is used to powerfully reject the background due to hadronically induced air showers from cosmic rays. Their inverse power-law energy-distribution leads to an increase of the event rate with decreasing energy threshold. For \MAGIC this implies a trigger rate in the order of 250\,Hz, and a correspondingly large data stream to be recorded and analyzed. A robust analysis software package, including the general framework \MARS, was developed and commissioned to allow automation, necessary for data taken under variable observing conditions. Since many of the astronomical sources of high-energy radiation, in particular the enigmatic gamma-ray bursts, are of a transient nature, the telescope was designed to allow repositioning in several tens of seconds, keeping a tracking accuracy of $\lesssim\,$0.01$^\circ$. Employing a starguider, a tracking accuracy of $\lesssim\,$1.3\,minutes of arc was obtained. The main class of sources at very high gamma-ray energies, known from previous imaging air-Cherenkov telescopes, are Active Galactic Nuclei with relativistic jets, the so-called high-peaked Blazars. Their spectrum is entirely dominated by non-thermal emission, spanning more than 15 orders of magnitude in energy, from radio to gamma-ray energies. Predictions based on radiation models invoking a synchrotron self-Compton or hadronic origin of the gamma-rays suggest, that a fairly large number of them should be detectable by \MAGIC. Promising candidates have been chosen from existing compilations, requiring high (synchrotron) X-ray flux, assumed to be related to a high (possibly inverse-Compton) flux at GeV energies, and a low distance, in oder to avoid strong attenuation due to pair-production in interactions with low-energy photons from the extragalactic background radiation along the line of sight. Based on this selection the first \AGN, emitting gamma-rays at 100\,GeV, 1ES\,1218+304 at a redshift of $z=0.182$, was discovered, one of the two farthest known \AGN emitting in the TeV energy region. In this context, the automated analysis chain was successfully demonstrated. The source was observed in January 2005 during six moonless nights for 8.2\,h. At the same time the collaborating \KVA-telescope, located near the \MAGIC site, observed in the optical band. The lightcurve calculated showed no day-to-day variability and is compatible with a constant flux of $F($\,$>$\,$100\,\mbox{GeV})=(8.7\pm1.4) \cdot 10^{-7}\,\mbox{m}^{-2}\,\mbox{s}^{-1}$ within the statistical errors. A differential spectrum between 87\,GeV and 630\,GeV was calculated and is compatible with a power law of $F_E(E) = (8.1\pm 2.1) \cdot 10^{-7}(E/\mbox{250\,GeV})^{-3.0\pm0.4}\,\mbox{TeV}^{-1}\,\mbox{m}^{-2}\,\mbox{s}^{-1}$ within the statistical errors. The spectrum emitted by the source was obtained by taking into account the attenuation due to pair-production with photons of the extragalactic background at low photon energies. A homogeneous, one-zone synchrotron self-Compton model has been fitted to the collected multi-wavelength data. Using the simultaneous optical data, a best fit model could be obtained from which some physical properties of the emitting plasma could be inferred. The result was compared with the so-called {\em Blazar sequence}.
Viren durchliefen eine gemeinsame Evolution mit ihren Wirtsorganismen, die zu einer spezifischen Anpassung der Viren an ihren jeweiligen Wirt führte. Als Folge dessen verfügen viele Viren über ein eng begrenztes Wirtsspektrum. Gelegentlich machen Viren Veränderungen durch, die es ihnen erlauben, einen neuen Wirt zu infizieren und in ihm zu replizieren, wie dies in jüngster Vergangenheit beim humanen Immundefizienz-Virus oder beim Grippevirus geschehen ist. Spezies-übergreifende Infektionen sind für die meisten neuen und wiederauftauchenden Viruserkrankungen verantwortlich. Allerdings ist bisher wenig über die Mechanismen bekannt, die Viren auf einen bestimmten Wirt beschränken, und welche Faktoren Viren zur Überwindung der Spezies-Barriere und zur Vermehrung in einer neuen Wirtsspezies benötigen. Cytomegaloviren sind Prototypen der beta-Herpesvirus Unterfamilie und verfügen über eine ausgeprägte Spezies-Spezifität. Sie vermehren sich nur in Zellen der eigenen oder einer eng verwandten Wirtsspezies. Der molekulare Mechanismus, der dieser Spezies-Spezifität zugrunde liegt, ist noch weitgehend unbekannt und stellt deshalb das Thema dieser Arbeit dar. Initiale Beobachtungen zeigten, dass sich das Maus-Cytomegalovirus (MCMV) ausschließlich in menschlichen 293 und 911 Zellen, aber keiner anderen getesteten menschlichen Zelle vermehren ließ. Diese beiden Zelllinien sind mit Adenovirus E1-Genen transformiert, die den Transkriptions-Transaktivator E1A sowie zwei Apoptose-Inhibitoren (E1B-55k und E1B-19k) kodieren. Daher lag die Hypothese nahe, dass diese Funktionen benötigt werden, um eine MCMV-Replikation in menschlichen Zellen zu ermöglichen. Außerdem konnte gezeigt werden, dass normale menschliche Zellen nach Infektion rapide absterben, und zwar durch eine Caspase-9-vermittelte Apoptose. Die Induktion der Apoptose durch MCMV lässt sich durch Caspase-Inhibitoren unterdrücken, wodurch die virale Replikation wiederhergestellt wird. Dies deutet auf eine Schlüsselfunktion der Caspasen für diesen Prozess hin. Durch Überexpression eines mitochondrialen Apoptose-Inhibitors, d.h. eines Bcl-2-ähnlichen Proteins, in menschlichen Zellen ließ sich die Virus-induzierte Apoptose verhindern. Diese Zellen erlaubten ebenfalls eine effiziente MCMV-Replikation. Die Bedeutung Bcl-2-ähnlicher Proteine für die Spezies-übergreifende Cytomegalovirus-Infektion wurde sowohl durch die Integration korrespondierender Gene, alsauch durch die Integration anderer Inhibitioren der Apoptose oder von Kontroll-Genen in das MCMV Genom bestätigt. Nur rekombinante Viren, die ein Bcl-2-ähnliches Protein kodieren, konnten in menschlichen Zellen vermehrt werden. Ein einziges Gen des humanen Cytomegalovirus, das einen mitochondrialen Apoptose-Inhibitor kodiert, reichte aus, um eine MCMV-Replikation in menschlichen Zellen zu ermöglichen. Zusätzlich konnte gezeigt werden, dass dieselben Prinzipien für eine Replikation des Ratten-Cytomegalovirus in menschlichen Zellen gelten. Zusammenfassend kann festgestellt werden, dass die Induktion der Apoptose eine Spezies-übergreifende Infektion bei den Nagetier-Cytomegaloviren einschränkt.
Allergic disease are inflammatory disorders in which aberrant immune regulation occurs, and susceptible individuals mount allergen specific T helper 2 (Th2) responses, which drives disease pathology. Recent studies indicate that Th2 responses that are characteristic of allergic manifestations can be regulated by both naturally occurring CD4+CD25+ regulatory (Treg) cells and antigen-driven IL-10-secreting CD4+ regulatory T cells. Evidence is also emerging that successful Allergen specific immunotherapy (SIT) might work through the induction of IL-10-secreting regulatory T cells. In the first part of this work, I demonstrated the efficiency of allergen specific immunotherapy in the mouse model for allergic airway inflammation. Here I could show that intranasal administration of SIT abrogates allergic symptoms more efficiently, than the subcutaneous treatment. Furthermore, an IL-4/IL-13 (QY) inhibitor was used as an adjuvant for SIT, which has been demonstrated to have an anti-allergic potential, when administered prophylactically during allergic sensitization. However, the combination therapy with SIT and the inhibitory molecule QY did not show any significant enhancement in regards to all measured allergic parameters, when compared to monotherapy with SIT. These results provide the evidence, that shift from Th2 to Th1 cytokine profile might not be a key event in successful SIT. Subsequently, the investigation of immune mechanisms under successful SIT demonstrate that the increase of IL-10 secreting CD4+ T regulatory cells is associated with the suppression of airway inflammation in our mouse system, suggesting that these T cell subsets might be involved in the regulatory mechanisms of allergic disorders. In agreement with these findings is the second part of this work, where superagonistic a-CD28 mAb´s were used for the expansion of T regulatory cell subsets in our murine model for allergic airway inflammation. Here I could show, that the application of a-CD28 mAb during allergic sensitization, resulted in the establishment of a Th2 state, rather than a stimulation of a Treg cell population, supporting the Th2 promoting role of a-CD28 mAb together with TCR engagement. However, interesting findings were obtained by application of the superagonistic a-CD28 mAb in the challenge phase in established allergy. Conversely to the previous experiment, therapeutic administration of a-CD28 mAb lead to the generation of IL-10 secreting CD4+CD25+ T cell population in line with the induction of anti-allergic effects. Taking together the results of this study argue for the anti-inflammatory properties of T regulatory cells in allergic disease and highlights importance of these T cell subsets in the suppression of Th2 cell-driven response to allergen. Moreover, these observations suggest that the induction of IL-10 in vivo by T regulatory cells may represent a novel treatment strategy for allergic disorders.
Background: Population pharmacokinetic-pharmacodynamic (PKPD) modeling and simulations were applied to identify optimal dosage regimens for antibiotics. As the emergence of bacterial resistance is increasing and as only a few new antibiotics became available during the last decade, optimal use of established agents and preserving their effectiveness seems vital. Objectives: 1) To find the descriptor of body size and body composition which allows to achieve target concentrations and target effects in patients with cystic fibrosis (CF) most precisely. 2) To identify the mode of administration with the highest probability of successful treatment for intravenous beta-lactams. 3) To develop formulas for optimal dose selection for patients of various body size. General methods: Drug analysis in plasma and urine was performed by HPLC or LC-MS/MS in a single laboratory, at the IBMP. Drug analysis was not done by the author of this thesis. We used non-compartmental analysis and parametric population PK analysis for all studies. We used non-parametric bootstrapping to assess the uncertainty of PK parameters for our meta-analysis of the PK in CF-patients and healthy volunteers. Plasma concentration time profiles for several thousand virtual subjects were simulated by MCS which account for average PK parameters, their between subject variability (BSV), and patient specific demographic data. Convincing literature data show that the duration of non-protein bound concentration above MIC (fT>MIC) best predicts the microbiological and clinical success of beta-lactams and the area under the non-protein bound concentration curve divided by the MIC (fAUC/MIC) best predicts success for quinolones. We used PKPD targets from literature that were based on the fT>MIC or fAUC/MIC, respectively. Achieving a PKPD target was used as a surrogate measure for successful treatment. In our MCS, we calculated the fT>MIC or fAUC/MIC for all simulated concentration profiles and compared it to the value of the PKPD target. The fraction of subjects who achieved the target at the respective MIC approximates the probability of target attainment (PTA). The PTA can be interpreted as probability of successful treatment under certain assumptions. Studies in CF-patients Methods: We had data from ten studies (seven beta-lactams and three quinolones) in CF-patients which all included a healthy volunteer control group. Clinical procedures were very similar for all ten studies. Both subject groups had study conditions as similar as possible. We had data on 90 CF-patients (average +/- SD, age: 21+/-3.6 yrs) and on 111 healthy volunteers (age: 25+/-3.5 yrs). We compared the average clearance and volume of distribution between CF-patients and healthy volunteers for various body size descriptors including total body weight (WT), fat-free mass (FFM), and predicted normal weight (PNWT). We considered linear and allometric scaling of PK parameters by body size and used a meta-analysis based on population PK parameters for the comparison of CF-patients and healthy volunteers. Target concentrations can be achieved more precisely, if a size descriptor reduces the random, unexplained BSV. Therefore, we studied the reduction of unexplained BSV for each size descriptor relative to linear scaling by WT, since doses for CF-patients are commonly selected as mg/kg WT. Results: Without accounting for body size, average total clearance was 15% lower (p=0.005) and volume of distribution at steady-state was 17% lower (p=0.001) in CF-patients compared to healthy volunteers. For linear scaling by WT, average total clearance in CF-patients divided by total clearance in healthy volunteers was 1.15 (p=0.013). This ratio was 1.06 (p=0.191) for volume of distribution. A ratio of 1.0 indicates that CF-patients and healthy volunteers of the same body size have identical average clearances or volumes of distribution. For allometric scaling by FFM or PNWT, the ratio of total clearance and volume of distribution between CF-patients and healthy volunteers was within 0.80 and 1.25 for almost all drugs and the average ratio was close to 1. Allometric scaling by FFM or PNWT reduced the unexplained BSV in renal clearance by 24 to 27% (median of 10 drugs) relative to linear scaling by WT. The unexplained BSV was reduced for seven or eight of the ten drugs by more than 15% and the remaining two or three drugs had essentially unchanged (+/-15%) unexplained BSVs in renal clearance. Conclusions: The PK in CF-patients was comparable to the PK in healthy volunteers after accounting for body size and body composition by allometric scaling with FFM or PNWT. Target concentrations and target effects in CF-patients can be achieved most precisely by dose selection based on an allometric size model with FFM or PNWT. Future studies are warranted to study the clinical superiority of allometric dosing by FFM or PNWT compared to dose selection as mg/kg WT in CF-patients.
There are numerous areas of application for which PKPD models are a valuable tool. We studied dose linearity, bone penetration and drug-drug interactions of antibiotics by PKPD modeling. Knowledge about possible saturation of elimination pathways at therapeutic concentrations is important for studying the probability of successful treatment of dosage regimens via MCS at various doses, other modes of administration, or both. We studied the dose linearity of flucloxacillin and piperacillin. For data analysis of the dose linearity studies, population PK modeling and MCS was used. Population PK has been reported to detect saturable elimination at lower doses, and to estimate BSV more precisely than the STS approach. The variability in PK and the expected variability in PD are combined in a MCS to predict the probability of successful treatment. Flucloxacillin showed no saturation of elimination at the studied doses of 500 mg and 1000 mg. Comparison of various dosage regimens showed, that only one third of the daily dose is needed with prolonged or continuous infusion to achieve the same probability of successful treatment as short-term infusions at the full dose. For serious infections with sensitive staphylococci that are treated with intravenous flucloxacillin, prolonged infusion and continuous infusion are an appealing treatment option. Contrary to flucloxacillin, renal elimination and to a lesser extent also nonrenal elimination of piperacillin were saturable at therapeutic concentrations. Renal clearance decreased by 24% (p = 0.02) after a dose of 3000 mg piperacillin compared to the 1500 mg dose. A model without saturable elimination predicted PTA expectation values that were 6 to 11% lower for high dose short-term infusions and 2 to 5% higher for low dose continuous infusions, compared to models with saturable elimination. These differences depend on the MIC distributions of the local hospital. However, more accurate estimates for the PTA expectation value can be obtained by including an existent saturable elimination pathway into the PK model. Developing a mechanistic model of an interaction allows one to predict the extent of the interaction for other doses of drug and inhibitor. We studied the interactions between gemifloxacin and probenecid, between ciprofloxacin, its metabolite M1 and probenecid, and between flucloxacillin and piperacillin. Mechanistic models for drug-drug interactions were developed by the STS approach. This approach directly accounts for the concentration dependence of an interaction and describes the full time course of an interaction. Probenecid significantly inhibited the renal elimination of gemifloxacin, ciprofloxacin and ciprofloxacin’s metabolite M1, and slightly decreased nonrenal clearance of gemifloxacin. Piperacillin significantly decreased renal and nonrenal clearance of flucloxacillin, but hardly vice versa. For all three interactions competitive inhibition of a capacity-limited renal elimination pathway was identified as the most likely mechanism. As those drugs are all actively secreted in the renal tubules, competitive interaction is physiologically reasonable. Probenecid had a lower affinity to the renal transporter than gemifloxacin, ciprofloxacin and M1. Due to its substantially higher concentrations, probenecid inhibited the elimination of the quinolones. The affinity of piperacillin for the renal transporter was 13 times higher compared to flucloxacillin. Piperacillin PK was only slightly affected by flucloxacillin. PK interactions with piperacillin are likely to occur also with other betalactam combinations. PK interactions may be useful to improve the PD profile of an antibiotic, however possibly increased risks for side effects (e.g. risk of rash for gemifloxacin and probenecid) have to be considered.
This thesis describes the inclusion of dynamical effects in the theoretical calculation of Electron Paramagnetic Resonance (EPR) spectroscopic parameters. The studies were performed using Density Functional Theory (DFT) methodology and a perturbation-theoretical approach to g-tensor calculations. Hydrogen atoms trapped in octasilasesquioxane cages display unexpectly high, positive g-values. Computational simulation of these systems successfully reproduced the positive g-values and found them to arise from spin-orbit coupling around the oxygen nuclei. Dynamical effects were estimated by calculating the potential well in which the hydrogen atom moves. Semiquinone radical anions are important bioradicals that play a role in photosynthesis and respiration. The simplest and most prototypical, benzosemiquinone anion, was simulated both in the gas phase and in aqueous solution by Car-Parrinello Molecular Dynamics (CPMD). The neutral benzoquinone was also simulated for comparison. The solvation environments of both the anionic and neutral molecules were analysed and compared. EPR parameters were calculated for the semiquinone, providing the first example of full inclusion of dynamic effects in g-tensor calculation. The effects of different solvation interactions on the g-tensor and hyperfine interactions were extensively examined. Additionally, static calculations (i.e., calculations not incorporating any dynamical effects) were performed. Comparison between these (and prior computational studies) and the dynamical system allowed an assessment of the effects of dynamics on solvation and EPR parameters. Ubisemiquinone radical anion, one of the most widely-occurring semiquinone radicals, was simulated in the aqueous phase using CPMD. The solvation environment was analysed and EPR parameters were calculated. The motion of the side-chain, and its effects on solvation and EPR parameters, were examined.
Neural networks can synchronize by learning from each other. For that purpose they receive common inputs and exchange their outputs. Adjusting discrete weights according to a suitable learning rule then leads to full synchronization in a finite number of steps. It is also possible to train additional neural networks by using the inputs and outputs generated during this process as examples. Several algorithms for both tasks are presented and analyzed. In the case of Tree Parity Machines the dynamics of both processes is driven by attractive and repulsive stochastic forces. Thus it can be described well by models based on random walks, which represent either the weights themselves or order parameters of their distribution. However, synchronization is much faster than learning. This effect is caused by different frequencies of attractive and repulsive steps, as only neural networks interacting with each other are able to skip unsuitable inputs. Scaling laws for the number of steps needed for full synchronization and successful learning are derived using analytical models. They indicate that the difference between both processes can be controlled by changing the synaptic depth. In the case of bidirectional interaction the synchronization time increases proportional to the square of this parameter, but it grows exponentially, if information is transmitted in one direction only. Because of this effect neural synchronization can be used to construct a cryptographic key-exchange protocol. Here the partners benefit from mutual interaction, so that a passive attacker is usually unable to learn the generated key in time. The success probabilities of different attack methods are determined by numerical simulations and scaling laws are derived from the data. If the synaptic depth is increased, the complexity of a successful attack grows exponentially, but there is only a polynomial increase of the effort needed to generate a key. Therefore the partners can reach any desired level of security by choosing suitable parameters. In addition, the entropy of the weight distribution is used to determine the effective number of keys, which are generated in different runs of the key-exchange protocol using the same sequence of input vectors. If the common random inputs are replaced with queries, synchronization is possible, too. However, the partners have more control over the difficulty of the key exchange and the attacks. Therefore they can improve the security without increasing the average synchronization time.
In this work we utilized Density Functional Theory to calculate EPR parameters and spin-density distributions of several transition metal complexes. To demonstrate the performance of our theoretical approach several validation studies were performed (Chapters 3-5). In contrast, the last three chapters of the thesis deal with specific chemical problems regarding several classes of biologically relevant transition metal complexes.
BAKTERIELLE ENDOSYMBIONTEN DER BIENENWÖLFE Symbiontische Interaktionen zwischen verschiedenen Arten stellen allgegenwärtige und essentielle Bestandteile natürlicher Systeme dar und haben wahrscheinlich die Evolution jedes rezenten Lebewesens beeinflusst. Insekten als die diverseste Metazoen-Klasse der Erde profitieren von dem außerordentlichen metabolischen Potenzial vieler Mikroorganismen in einer großen Anzahl mutualistischer Assoziationen. Die große Mehrheit der bisher untersuchten Symbiosen zwischen Insekten und Mikroorganismen stellen Interaktionen dar, in denen die Wirte durch die Symbionten mit essentiellen Nährstoffen versorgt werden. Es sind jedoch auch einige Fälle bekannt, in denen symbiontische Bakterien eine wichtige Rolle für die intraspezifische olfaktorische Kommunikation spielen oder zur Verteidigung gegen Pathogene oder Parasitoide dienen. Die vorliegende Arbeit untersucht eine hoch spezialisierte Assoziation zwischen einer Grabwespen-Art, dem Europäischen Bienenwolf (Philanthus triangulum, Hymenoptera, Crabronidae), und Bakterien aus der Familie der Actinomyceten. Die bakteriellen Symbionten sind an einem einzigartigen Ort zu finden: Sie werden in den Reservoiren spezialisierter Antennendrüsen weiblicher Bienenwölfe kultiviert. Das Weibchen sezerniert vor der Eiablage große Mengen dieser Bakterien in die unterirdischen Brutkammern. Wenn die Bienewolf-Larve einige Tage später ihre Nahrungsaufnahme an den von der Mutter als Nahrungsvorrat bereitgestellten Honigbienen beendet hat, nimmt sie die Bakterien auf und spinnt sie in ihren Kokon mit ein. Dort erfüllen die Symbionten eine wichtige Funktion, indem sie den Schimmelbefall herabsetzen und dadurch die Überlebenschancen der Larve im Kokon während der langen und gefährlichen Winterruhe signifikant erhöhen. Experimente, in denen Bienenwolf-Weibchen ohne die Bakterien aufgezogen wurden, und Beobachtungen an Bienenwolf-Larven deuten darauf hin, dass die Symbionten vertikal von der Mutter an die Töchter weitergegeben werden. Vermutlich werden die Bakterien während des Schlupfes oder kurz davor vom Kokon in die Antennendrüsen-Reservoire aufgenommen. Phylogenetische Untersuchungen von Wirten und Symbionten sowie Transfer-Experimente mit den Bakterien wären notwendig, um herauszufinden, ob ein horizontaler Austausch der Symbionten zwischen verschiedenen Bienenwolf-Arten möglich ist. Genetische Analysen zeigen, dass die Symbionten einer unbeschriebenen Art der Gattung Streptomyces innerhalb der Actinomyceten angehören. 16s rDNA Primer und eine fluoreszenzmarkierte Oligonukleotid-Sonde wurden entwickelt, um die Bienenwolf-Symbionten mittels PCR und Fluoreszenz-in-situ-Hybridisierung (FISH) spezifisch nachweisen zu können. Mit Hilfe von PCR und Sequenzierungen der 16s rDNA konnten nah verwandte Endosymbionten in den Antennen von 28 Arten und Unterarten der Gattung Philanthus festgestellt werden, nicht aber in anderen Gattungen der Unterfamilie Philanthinae (Aphilanthops, Clypeadon, Cerceris), so dass die Symbiose auf die Gattung Philanthus beschränkt zu sein scheint. Phylogenetische Untersuchungen auf der Grundlage nahezu kompletter 16s rDNA-Sequenzen belegen, dass die Symbionten aller analysierten Bienenwolf- Arten eine monophyletische Gruppe innerhalb der Gattung Streptomyces bilden, was darauf hindeutet, dass die Symbiose hoch spezifisch ist und wahrscheinlich das Ergebnis einer langen Koevolution und Kospeziation darstellt. Anhand von Sequenzunterschieden zwischen den Symbionten lässt sich das Alter der Assoziation zwischen Philanthus und Streptomyces auf etwa 26-67 Millionen Jahre schätzen, was der Entstehung der Gattung Philanthus entsprechen könnte. Auf der Basis von 16s rDNA Sequenzen und Ultrastruktur-Daten wurden die Antennensymbionten der Bienenwölfe als neues Taxon ‚Candidatus Streptomyces philanthi’ beschrieben, wobei die Symbionten verschiedener Wirtsarten als Ökotypen behandelt und nach der Wirtsart benannt wurden (z.B. ‚Candidatus Streptomyces philanthi triangulum’). Wie die Bakterien von der Assoziation mit Bienenwölfen profitieren, ist noch unklar. Auf jeden Fall wird ihnen vom Wirt eine unbesetzte und wahrscheinlich konkurrenzfreie ökologische Nische in den Antennen sowie eine zuverlässige Weitergabe an die nächste Generation garantiert. Außerdem sprechen einige Hinweise für eine Versorgung der Bakterien mit Nährstoffen durch den Bienenwolf: (1) Weibchen legen manchmal mehrere Brutkammern pro Tag an und sezernieren jedes Mal große Mengen an Bakterien; die Bakterien müssen sich also in den Drüsen-Reservoiren schnell vermehren, um den Vorrat an Symbionten wieder aufzufüllen. (2) Die Reservoire sind von Typ 3-Drüsenzellen umgeben, die die Bakterien mit Nährstoffen versorgen könnten. (3) Eine der Reservoir-Wände weist eine netzartige Struktur auf, die möglicherweise den Eintritt von Hämolymphe und damit von Nährstoffen in das Reservoir zulässt. Dies wird durch chemische Analysen der Kohlenwasserstoffe in der Hämolymphe und in dem Antennendrüsen-Sekret untermauert, die sehr ähnliche Zusammensetzungen aufweisen. Die Assoziation zwischen Bienenwölfen und Streptomyceten stellt den ersten bekannten Fall einer Symbiose dar, bei der Bakterien in den Antennen von Insekten kultiviert werden, und sie repräsentiert eines von wenigen Beispielen für Actinomyceten als Symbionten von Insekten. Weitere Untersuchungen evolutionärer und ökologischer Aspekte dieser Symbiose werden wertvolle Erkenntnisse über die Bedeutung von Actinomyceten für die Pathogen-Abwehr bei Insekten liefern und könnten sogar zur Entdeckung neuer Sekundärmetabolite mit antibiotischen Eigenschaften für die Verwendung in der Humanmedizin führen. CHEMISCHE KOMMUNIKATION UND PARTNERWAHL BEIM EUROPÄISCHEN BIENENWOLF Chemische Signale stellen sowohl die älteste als auch die am weitesten verbreitete Form von Kommunikation zwischen Organismen dar. Bei Insekten spielen Pheromone eine essentielle Rolle für die intraspezifische Kommunikation, und eine Vielzahl aktueller Untersuchungen belegt die Bedeutung olfaktorischer Signale für die Balz und Paarung. Die meisten dieser Studien konzentrieren sich jedoch auf Weibchen-Pheromone, während von Männchen produzierte Pheromone trotz ihrer ökologischen und evolutionären Bedeutung für die Partneranlockung und Partnerwahl bisher wenig Beachtung gefunden haben. Männchen des Europäischen Bienenwolfes etablieren und verteidigen Territorien, die sie mit einem Kopfdrüsen-Sekret markieren. Dieses Sekret wirkt höchstwahrscheinlich als ein Sex- Pheromon und lockt paarungsbereite Weibchen an. Da Männchen-Territorien meist aggregiert in der Nähe von Weibchennestern auftreten, haben die Weibchen die Möglichkeit, zwischen verschiedenen potenziellen Paarungspartnern zu wählen. Die chemischen Analysen der vorliegenden Arbeit zeigen, dass die Zusammensetzung und Menge des männlichen Markierpheromons vom Verwandtschaftsgrad, der Herkunft, dem Alter und der Größe der Männchen abhängen. Das Pheromon beinhaltet demnach Informationen über eine Vielzahl von Eigenschaften der Männchen, die für die Weibchenwahl von Bedeutung sein könnten. Sowohl die genetische Distanz („optimal outbreeding“) als auch die allgemeine genetische Qualität („good genes“) eines Männchens könnte die Partnerwahl der Bienenwolf-Weibchen beeinflussen. In dieser Arbeit für den Europäischen Bienenwolf entwickelte polymorphe Mikrosatelliten legen den Grundstein für Vaterschaftsanalysen und ermöglichen so die Durchführung und Auswertung von Experimenten zur Weibchenwahl bei dieser Art.
Infrared (IR) and Raman spectroscopy are among the most widely used techniques in the physical and natural sciences today. Vibrational spectroscopy, including IR and Raman spectroscopy, has both a long and interesting history and an illustrious record of contributions to science. Spectroscopy in the pharmaceutical industry is dominated by techniques such as nuclear magnetic resonance (NMR) and mass spectrometry (MS) for the elucidation of chemical structures. Despite this, the versatility of infrared spectroscopy ensures it still remains a key technique in quality control laboratories, and in applications where solid form characterization or minimal sample preparation is a necessity. Raman spectroscopy has many uses in the pharmaceutical and chemical industry, but its strengths is in solid form analysis. It is regularly used to identify compounds, and results are used in the release of pharmaceutical and chemical products. This work consists of 8 chapters, which cover the vibrational spectroscopy beginning with the theory and instrumentation, continuing with the experimental setup and probes description, and completing with results and discussions of the experiments. The first chapter of this work introduces Raman spectroscopy as a dominant technique used in pharmaceutical and chemical industry. The theoretical background regarding vibrational spectroscopy (IR and Raman) is accounted for in the second chapter of this work, while the samples presentation, the experimental procedures, and the description of the apparatus together with the computational details are briefly specified in the third chapter. The fourth chapter investigates the concentration dependent wavenumber shifts and linewidth changes of tetrahydrofuran in a binary system. Many of the applications in food science rely heavily on Raman spectroscopy, often preceding the biomedical applications. The characterization and identification of food additives using Raman, surface-enhanced Raman spectroscopy, and theoretical calculations is in detail depicted in the fifth chapter, whereas in the sixth and seventh chapters the monitoring of several medicines and various lanthanide complexes with anticancer properties, respectively, employing IR and Raman techniques are treated. These last two chapters address applications of vibrational spectroscopy to pharmaceutical products, and include the use of vibrational spectroscopy in combinatorial chemistry and density functional theory, a modality increasingly used by the pharmaceutical industry for the discovery if new pharmacologically active substances.
Solid organ transplantation is an established therapeutic approach in modern medicine to extend and to improve the life of patients in the final stages of organ failure. Transplantation between genetically non-identical individuals leads to the activation of the transplant recipient's immune system. This alloimmune response is a consequence of the recognition of foreign MHC molecules by alloreactive host T cells. To prevent their activation and the subsequently induced activation of further cell subsets (e.g. B cells, cytotoxic T cells, macrophages)immunosuppressive drugs are absolutely necessary in the clinic. However,permanent immunosuppression leads to severe side effects such as nephrotoxicity, diabetes and hyperlipidaemia, and a reduced immunity to infections and malignant diseases. At the moment, there is no real alternative to immunosuppression. The purpose of this study was to analyse the importance of rat dendritic cells with immune inhibitory properties to prevent the immune activation after experimental transplantation. The rat is one of the most important animal models for experimental organ transplantation in a clinic-relevant procedure. In order to modulate the immune response after transplantation in an antigenspecific manner, the strategy should include the alloantigens. These antigens have to be presented by immature dendritic cells in the absence of costimulatory signals in order to turn alloreactive T cells into anergic or regulatory T cells instead of effector T cells. For a certain rat model of allograft rejection,the immunodominant peptide P1 was identified as an important alloantigen which accelerates graft rejection. Such a model offers an attractive and practical approach to analyse the potential of host tolerogeneic dendritic cells pulsed with P1 to suppress the allograft-induced immune response in an antigen-specific manner without the need of chronic immunosuppression. A homogenous population of rat immature dendritic cells was generated from bone marrow precursors cultured with GM-CSF and IL-4 (= IL-4 DCs) or GM65 CSF and IL-10 (= IL-10 DCs). These cells with an identical immature phenotype showed no or a very low surface expression of costimulatory molecules like CD80 and CD86 and a 10-fold reduced expression of MHC class II molecules in comparison to mature splenic DCs. No obvious difference was observed between the phenotype of the IL-4 DCs and the IL-10 DCs. Neither IL-4 DCs nor IL-10 DCs were able to activate naïve T cells or to restimulate antigen-specific T cells. This strong inhibitory effect, mediated within 24 hours, was dependent on the number of immature dendritic cells added to the proliferation assay. Antigen-specific T cells pre-incubated with IL-4 DCs and IL-10 DCs, respectively, were not able to proliferate in the presence of P1-pulsed mature DCs. This anergic state was reversible with the addition of exogenous IL-2. T cells incubated with IL-4 DCs (= IL-4 DC-Ts) were able to inhibit the T cell proliferation in a cell number dependent manner. In contrast, antigen-specific T cells pre-incubated with P1-pulsed IL-10 DCs (= IL-10 DC-Ts)showed no effect on the proliferation assay. This was the unique difference between IL-4 DCs and IL-10 DCs found in the present study. Immature DCs influenced also the immune response after transplantation. Different numbers of P1-loaded immature IL-4 DCs and IL-10 DCs were transferred intravenously into Lewis rats one day before transplantation. The best results were obtained with 30 million P1-pulsed immature DCs which prolonged the survival time to a median of 11.2 ± 1.6 days. In addition, the antigen specificity of this effect was demonstrated with a third-party graft from Brown Norway donors. These findings suggest that an antigen-specific modulation of the immune response is possible using immature dendritic cells loaded with the allogeneic antigens. Even more, the protocols described in the present study show that the immune system can be, at least temporarily, controlled after transplantation without the use of immunosuppressive drugs.
The generation of high harmonics is an ideal method to convert frequencies of the infrared- or visible range into the soft x-ray range. This process demands high laser intensities that are nowadays supplied by femtosecond laser systems. As the temporal and spatial coherence properties of the laser are transferred during the conversion process, the generated high harmonics will propagate as a beam with high peak-brightness. Under ideal conditions the generation of soft-x-ray pulses shorter than one femtosecond is possible. These properties are exploited in many applications like time-resolved x-ray spectroscopy. The topic of this thesis is the generation and optimization of high harmonics. A variety of conversion setups is investigated (jet of noble gas atoms, gas-filled hollow-fiber, water microdroplets) and theoretical models present ideas to further enhance the conversion efficiency (using excited atoms or aligned molecules). In different setups the peak intensity of the fundamental laser pulses is increased by spectral broadening and subsequent temporal compression. This is achieved with the help of pulse shaping devices that can modify the spectral phase and therefore also the temporal intensity distribution of laser pulses. These pulse shaping devices are controlled by an evolutionary algorithm. With this setup not only adaptive compression of laser pulses is possible, but also the engineering of specific laser pulse shapes to optimize an experimental output. This setup was used to influence the process of high harmonic generation. It is demonstrated that the spectral distribution of the generated soft-x-ray radiation can be controlled by temporal pulse shaping. This method to tailor high harmonics is complemented by spatial shaping techniques. These findings demonstrate the realization of a tunable source of soft-x-ray radiation.
In spite of the progress made in deciphering regulatory networks of cancer cells on the molecular level, the interaction of tumour cells with their stroma has not been adequately analyzed. Earlier, we have addressed the hypothesis that the murine embryonic microenvironment can induce the differentiation of human tumour cells. To examine such interactions, human leukaemic AML cells were injected into pre-implantation murine blastocysts at embryonic day 3.5 of gestation. Analysis of developing mice revealed the presence of human AML cells in chimaeric embryos and adults and the appearance of haematopoietic differentiation markers on progeny of injected human AML cells. This finding strengthens the notion that the embryonic microenvironment is capable of regulating the proliferation and differentiation of leukaemic AML cells. Based on these results, I embarked to analyse the consequences of stromal environment-induced changes in human AML cells upon in vitro coculture with selected haematopoietic stromal cell lines in terms of changes in differentiation and proliferation properties of AML cells. For this purpose, established human AML cell lines were cocultured on a variety of mitotically inactivated stromal cell lines derived from different murine embryonic/foetal haematopoietic sites such as yolk sac, aorta-gonad-mesonephros (AGM) region and foetal liver. To score for coculture-induced changes, I compared the morphology, histo-chemical properties, immunophenotype, proliferation rate, and gene expression profile in cocultured and non-cocultured AML cells. Results show that, upon coculture of Kasumi-1 cells- a cell line established from a FAB class M2 patient - with AGM-derived DAS 104-4, but not with other stromal cell lines, Kasumi-1 AML cells exibit decreased proliferation and colony formation capabilities and acquire differentiated morphologies. Along this line, coculturing of Kasumi-1 cells resulted in the up-regulation of the myelo-monocytic lineage cell surface markers CD11b and CD14. Coculture also resulted in increase in lysosomal marker CD68, a hallmark of myeloid differentiation. Interestingly, apart from cell lines, coculture on DAS 104-4 stroma was also efficient in inducing myeloid differentiation of patient derived primary M2-AML cells. Moreover, cocultivation of KG-1 cell line on DAS 104-4 showed activation of -globin transcription and up-regulation of Glycophorin A on its surface, which indicate DAS 104-4 coculture-induced erythroid differentiation of KG-1 cells. Analysis of the proliferation rate of Kasumi-1 cells using the CFSE retention assay revealed that upon cocultivation on DAS 104-4, but not on NIH 3T3 cells, there is a decrease both in the proliferation rate and in the frequency of colony forming cells in clonogenic methyl cellulose cultures. Cell cycle analysis revealed the coculture-induced accumulation of G1-G0 stage cells. Gene-expression analysis by quantitative RT-PCR revealed a substantial decrease in the amount of AML1 and AML1-ETO fusion transcripts in parallel with an increase in p16, p21, C/EBP and PU.1 transcription levels. Interestingly, AML1-ETO transcription down-regulation of AML cells needs direct contact with DAS 104-4 cells. Knocking down AML1-ETO expression by siRNA strategy led to reduction in proliferation and depletion of colony forming cells in Kasumi1 cell population. siRNA-mediated AML1-ETO knock-down Kasumi-1 cells showed increased susceptibility to stroma-induced myeloid differentiation. However, on its own, AML1-ETO down-regulation was not sufficient to induce myeloid differentiation. This indicates that AML1-ETO down-regulation may have an active role on the coculture-induced effect but in addition to AML1-ETO down-regulation, further stimuli are required for the coculture-induced myeloid differentiation in the AML cells. In summary, in the present study I established and characterised a coculture-based in vitro system, which is capable of reducing the proliferation while inducing differentiation of human AML cells. The concept emerging from the studies indicates that the stroma environment can affect leukaemic cell proliferation and differentiation in contact-dependent and CD44 activation-independent manner. Furthermore, this study emphasizes the role of AML1-ETO in AML and indicates that AML1-ETO down-regulation is involved in the stroma-induced differentiation of Kasumi-1 cells. The result described here encourages further investigation into the mechanistic details of molecular and cellular interactions between the leukaemic cells and their stroma, which in turn may lead to the identification of new paradigms for a knowledge-based control and reprogramming of leukaemic cells.
Conjugation of reactive intermediates of drugs with proteins or DNA may result in toxic effects such as hepatotoxicity, agranulocytosis, allergies, tumors, etc. From 1975 to 1999, 2.9% of drugs were withdrawn from the market due to such severe adverse drug reactions. Thus, formation of chemically reactive intermediates is a widely discussed problem in drug development processes. Early detection of potentially toxic compounds is required for drug discovery and drug development. Conjugation of such electrophilic compounds with glutathione (GSH) is one of the most important detoxifying reactions in vivo. Processing of these GSH-conjugates ultimately leads to the formation of renally cleared mercapturic acids, which may also be oxidized to sulfoxides. Thus, mercapturic acids may be generated and detected in vitro and non-invasively in vivo in urine to assess the reactivity of a compound in early stages of drug development processes. Therefore, the aim of this work was to develop and evaluate a HPLC-MS/MS screening method for simple and rapid detection and characterization of known and unknown mercapturic acids and application of the method to several different matrices. Based on the common constant neutral loss (CNL) of 129 Da of all mercapturic acids tested (in negative ion mode), a CNL survey scan was performed using a linear ion trap instrument and was combined with two enhanced product ion (EPI) scans with different collision energies to characterize the detected signals. The CNL resulted from the cleavage between the sulfur and the carbon atom in the N-acetyl-L-cysteine moiety. After optimization of the experimental parameters, the detection limits of the reference substances in rat urine ranged from 0.3 to 15.5 pmol on column (i.e. 20 ng/ml to 800 ng/ml). For in vitro evaluation of the method, the model compounds acetaminophen, diclofenac, bifonazole, clozapine, troglitazone, carbamazepine, and bisphenol A were screened for formation of reactive intermediates and, hence, detection of the corresponding mercapturic acids. To determine possible species- and tissue-specific toxicities, the model compounds were incubated with stimulated neutrophils and with liver microsomes from rats and humans. Species-specific differences were observed in incubations of acetaminophen and diclofenac with rat and human hepatic microsomes. Tissue-specific differences in biotransformation of the model compounds in incubations with human neutrophils and human liver microsomes were observed for diclofenac, carbamazepine, clozapine, and bifonazole. The developed HPLC-MS/MS method was also evaluated in vivo by analysis of rat and human urine. Drug-related mercapturic acids were detected in urine of rats orally treated with acetaminophen (20 mg/kg and 640 mg/kg b.w.) or diclofenac (10 mg/kg and 20 mg/kg b.w.). Human urine samples were analyzed before and after oral administration of a clinically used dose of 500 mg and 50 mg of acetaminophen. Besides detection of the mercapturic acid of N-acetylbenzoquinoneimine (AAP-MA), a second mercapturic acid with m/z 327 occurred dose-dependently in rat and human urine samples after administration of acetaminophen. Further investigations on identification of this metabolite using authentic compounds and comparing their MS/MS mass spectra demonstrated oxidation of AAP-MA to stereoisomeric sulfoxides in vivo. For diclofenac, a novel mercapturic acid with m/z 441 was detected in rat urine samples that was identical to a metabolite obtained in incubations with human neutrophils before. The in vivo formation of this diclofenac metabolite is described here for the first time. In addition, three endogenously formed mercapturic acids were detected and identified. In conclusion, the results of the in vitro and in vivo evaluation demonstrate the advantages of the rapid and generic HPLC-MS/MS screening method for the detection of mercapturic acids, that can be obtained with a minimum of sample preparation and a high throughput in diverse matrices.
As a traditional industrial pigment, perylene bisimide (PBI) dyes have found wide-spread applications. In addition, PBI dyes have been considered as versatile and promising functional materials for organic-based electronic and optic devices, such as transistors and solar cells. For these novel demands, the control of self-organization of this type of dye and the investigation of the relationship between the supramolecular structure and the relevant optical and electronic properties is of great importance. The objective of this thesis focuses on gaining a better understanding of structural and functional properties of pi-stacks based on self-assembling PBIs. Studies include the synthesis and characterization of new functional PBI dyes, their aggregation in solution, in liquid crystalline state and on surfaces, and their fluorescence and charge transport properties. An overview of the formation, thermodynamics and structures of pi-stacks of functional pi- conjugated molecules in solution and in liquid crystalline phases is given in Chapter 2. Chapters 3 and 4 deal with the pi-pi aggregates of new, highly fluorescent PBIs without core-substituents. In Chapter 3, the self-assembly of a PBI with tridodecylphenyl substituents at imide N atoms both in solution and condensed phase has been studied in great detail. In condensed state, the dye exhibits a hexagonal columnar liquid crystalline (LC) phase as confirmed by DSC, OPM and X-ray diffraction analysis. The columnar stacking of this dye has been further confirmed by atomic force microscopy (AFM) where single columns could be well resolved The charge transport properties this dye have been investigated by pulse radiolysis-time resolved microwave conductivity (PR-TRMC) measurements. To shed more light on the nature of the pi-pi interaction of the unsubstituted PBIs, solvent depend aggregation properties have been investigated in Chapter 4. The studies are further extended from core-unsubstituted PBIs to core-substituted ones (Chapter 5 and 6). In Chapter 5, a series of highly soluble and fluorescent core-twisted PBIs that bear the same trialkylphenyl groups at the imide positions but different bay-substituents and were synthesized. These compounds are characterized by distortions of the perylene planes with dihedral angles in the range of 15-37° according to crystallographic data and molecular modeling studies. In contrast to the extended oligomeric aggregates formed for planar unsubstituted PBIs, this family of dyes formed discrete pi-pi-stacked dimers in apolar methylcyclohexane as concentration-dependent UV/Vis measurements and VPO analysis revealed. The Gibbs free energy of dimerization can be correlated with the twist angles of the dyes linearly. In condensed state, several of these PBIs form luminescent rectangular or hexagonal columnar liquid crystalline phases with low isotropization temperatures. The core-twisting effect on semiconducting properties has been examined in Chapter 6. In this chapter, a comparative study of the electrochemical and the charge transport properties of a series of non-substituted and chlorine-functionalized PBIs was performed. While Chapters 3-6 focus on one-component dye systems, Chapter 7 explored the possibility of a supramolecular engineering of co-aggregates formed by hydrogen-bonded 2:1 and 1:1 complex of oligo(p-phenylene vinylene)s (OPVs) and PBIs. Covalently linked donor-acceptor dye arrays have been prepared for comparison. Concentration and temperature-dependent UV/Vis spectroscopy revealed all hydrogen-bonded and covalent systems form well-ordered J-type aggregates in methylcyclohexane. With these hydrogen-bonded OPV-PBI complexes, fibers containing p-type and n-type molecules can be prepared on the nano-scale (1-20 nm). For the 2:1 OPV-PBI hydrogenbonded arrays hierarchically assembled chiral superstructures consisting of left-handed helical pi-pi co-aggregates (CD spectroscopy) of the two dyes that further assemble into right-handed nanometer-scale supercoils in the solid state (AFM study) have been observed. All of these well-defined OPV-PBI assemblies presented here exhibit photoinduced electron transfer on sub-ps timescale, while the electron recombination differs for different systems.Thus, it was suggested that such assemblies of p- and n-type semiconductors might serve as valuable nanoscopic functional units for organic electronics.
From the history of the Church, we gather that one of the most major tests that confronted the early Christian community was whether everyone who wanted to become a Christian also of necessity had to become a Jew as a pre-requisite for entrance into the new community of believers. The issue at stake is whether one qualifies to be a Christian through adherence to the Jewish identity, which centres on circumcision and the observance of the Mosaic legal code. The crisis resulted to the convocation of the Jerusalem Council (cf. Acts 15), which tasked itself with the definition of the Christian identity. The Council bases its definition of Christian identity, separable from adherence to the Jewish cultural practice (a form of cultural imperialism), solely on election by God in Jesus Christ. Moreover, the event of the Pentecost in Jerusalem demonstrated what the nature of the spreading of the message of this new community of believers in Jesus Christ should be: that people from other cultures, “Parthians, Medes and Elamites; people from Mesopotamia, Judaea and Capadocia, Ponthus and Asia, Phrygia and Pamphylis, Egypt and the parts of Libya around Cyrene; as well as visitors from Rome, Jews and Proselytes alike, Cretans and Arabs” (Acts 2: 9-11), could understand the message that Peter communicated to them through the force of the breath of the risen Jesus in their own mother tongue, without first becoming Jews. Against the background of this crucial point in the history of the early Church and in consideration of the Second Vatican Council, this dissertation seeks to address the problem of identity, unity and diversity in the Christian religion with special reference to Africa. It proposes that the traditional African Rites of Initiation that mark the transition from one stage of life to the other and therefore the existential and essential transformation of the individual and group offer with their rich symbolisms a very fertile ground for dialogue with the Christian religion. It views the various Rites of Initiation (from birth and ritual circumcision over puberty and adult to marriage and funeral rites) as vital and immutable seminal points in the life of the individual African and his/her society at large. These Rites that express in various ways the African holistic view and conception of life and reality are, in terms of their religious symbolism, meaning and function, analogous to their Christian counterparts (such as baptism, confirmation, Eucharist, ordination, marriage) and can as a result be conveniently accepted or at least incorporated even if in modified forms as authentic African initiation rites for African Christians. Without being syncretistic, such an incorporation and modification at one and the same time recognizes and respects the cultural identity of the African and marks his/her transformation and acceptance of his/her new identity, modelled on Christ. In this way, the African Christian will be enabled to live, articulate and express his/her faith within his/her own historical-cultural milieu. On the whole, the presentation is predictive and prescriptive with regard to what the relationship and dialogue between Christianity and the African Traditional Religion should be or should not be. It is an honest effort to make the Christian message relevant to the African in his/her own perceptual and conceptual world-view. This task remains a steady challenge to African Christians who want to maintain at one and the same time and at the same level their African identity and their Christian calling. The balancing and reconciling of these two identities in a correlating rather than confrontational manner remains a task for the Church of today and tomorrow. The dissertation is a foundational contribution to building up and sharpening consciousness for this problem.
The obligate intracellular gram-negative bacterium, Chlamydophila pneumoniae (Cpn), has a significant impact as an acute and chronic disease-causing pathogen. Its potential to undergo persistent infections has been linked to chronic diseases. Several in vitro cell culture models are used to study persistent conditions, mainly IFN_ stimulation, treatment with antibiotics and iron depletion. Little is known about changes in the Cpn transcriptome during the acute and persistent infection. Therefore, the Cpn transcriptome during its acute developmental cycle and iron depletion-mediated persistence was examined in this study. Based on expression profiles, genes with similar expression changes formed 12 clusters using the self-organizing map algorithm. While other studies define genes based on their onset of transcription, here the important feature for clustering was the expression profile. This turned out to be more appropriate for comparing the time specific relevance of a certain cluster of genes to their proposed functions in the cycle. The Cpn clusters were grouped into the 'Early', 'Mid' and 'Late' classes as described for Ctr. Additionally, a new gene expression class containing genes with steadily increasing expression at the end of the developmental cycle was defined and termed 'Tardy' class. Comparison of the Cpn clusters to published proteomics data showed that genes encoding elementary body (EB) proteins peaked in the 'Late' gene cluster. This indicated that genes of the ‘Late’ and ‘Tardy’ class have different roles in RB to EB re-differentiation. Moreover, using lexical comparison the EB mRNA profile was significantly linked to the ‘Tardy’ cluster class. This provided evidence that initial translation in the cycle might be directed from stable transcripts present in the infectious EB form. Based on these criteria the novel ‘Tardy’ class was separated from the ‘Late’ class. The gene ontologies were used to identify specific pathways and physiological functions active during the different phases of development. Additionally, the transcriptome of Cpn in the persistent stage was compared to that of the acute developmental cycle. The Cpn transcriptome was altered in the iron-depletion mediated persistence. Genes upregulated were linked to clusters at the beginning of the developmental cycle, and genes down-regulated were linked to clusters at the end of the developmental cycle. These data provided strong evidence that the Cpn transcriptome during persistence is a gene expression arrest in mid-development. In early acute infection convergently or divergently oriented gene pairs preferentially had an antagonistic expression profile, whereas tandemly oriented gene pairs showed a correlated expression profile. This suggests that the Cpn genome is organized mainly in tandemly arranged operons and in convergently or divergently oriented genes with favored antagonistic profiles. The microarray studies done with the Cpn strain CWL029 also showed expression signals for several genes annotated only for the Cpn strains AR39 and J138. BLAST comparison verified that these genes are also coded in the CWL029 genome. Several of these genes were convergently arranged with their neighboring gene and shared overlapping genome information. Among these were parB, involved in DNA segregation and rpsD, an alternative sigma factor responsible for the transcription at late stages of the developmental cycle. Both genes have been described to have major roles in the chlamydial cycle. These genes had an antagonistic expression profile at the beginning of the acute developmental cycle and in persistence, as described before to be predominant for convergently oriented genes. Real time RT-PCR analysis showed that full-length rpsD mRNA transcripts were down-regulated, whereas short-length rpsD mRNA transcripts were up-regulated during the persistent infection. This demonstrated that the rpsD promoter is activated during the persistent infection and that because of the collision of the RNA polymerases full length transcripts were down-regulated. This sigma factor-independent mechanism is known as ‘Transcriptional Interference’. This is the first description on how the alternative sigma factor rpsD might be down-regulated during persistent infections. Finally, the host cell transcriptome was analyzed in the acute and persistent infection mediated by the depletion of iron. Cpn infection triggered the upregulation of relB, involved in an alternative NF-KB signaling pathway. Several genes coding for cell cycle proteins were triggered, including cyclin G2 and cyclin D1 and inhibitors of CDK4. Taken together, this work provides insights into the modulation of the pathogen and the host transcriptome during the acute infection and the iron mediated persistent infection.
Regulation of mitotic progression : Focus on Plk1 function and the novel Ska complex at kinetochores
(2006)
During mitosis the duplicated chromosomes have to be faithfully segregated into the nascent daughter cells in order to maintain genomic stability. This critical process is dependent on the rearrangement of the interphase microtubule (MT) network, resulting in the formation of a bipolar mitotic spindle. For proper chromosome segregation all chromosomes have to become connected to MTs emanating from opposite spindle poles. The MT attachment sites on the chromosomes are the kinetochores (KTs), which are also required to monitor the integrity of KT-MT interactions via the spindle assembly checkpoint (SAC). The first part of this work concerns the action of Polo-like kinase 1 (Plk1). Plk1 is one of the most prominent mitotic kinases and is involved in the regulation of multiple essential steps during mitosis consistent with its dynamic localisation to spindle poles, KTs and the central spindle. Despite a nice model of Plk1 targeting to different mitotic structures via its phosphopeptide binding Polo-box domain (PBD), the exact molecular details of Plk1 functioning, in particular at the KTs, remain obscure. By two different approaches we obtained cells with an unlocalised Plk1 kinase activity: first by generating stable HeLa S3 cell lines, which upon induction expressed the PBD and thus displaced endogenous Plk1 from its sites of action. Secondly, by rescuing cells RNAi-depleted of Plk1 with the catalytic Plk1 domain only. Centrosome maturation, bipolar spindle assembly and loss of cohesion between the chromatid arms proceeded normally in either cells, in contrast to Plk1-depleted cells, arguing that PBD-mediated targeting of Plk1 is less critical for the tested functions. Remarkably, however, both the PBD expressing as well as the Plk1-depleted cells rescued with the catalytic domain of Plk1 arrested in early mitosis in a SAC-dependent manner with uncongressed chromosomes. These data disclose a so far unrecognised role of Plk1 in proper chromosome congression and point at a particular requirement for PBD-mediated localised Plk1 activity at the KTs. In the second part of the thesis, we characterised a novel spindle and KT associated protein, termed Ska1, which was originally identified in a spindle inventory. Ska1 associated with KTs following MT attachment during prometaphase and formed a complex with at least another novel protein of identical localisation, called Ska2. Ska1 was required for Ska2 stability in vivo and depletion of either Ska1 or Ska2 resulted in the loss of both proteins from the KTs. The absence of Ska proteins did not disrupt overall KT structure but most strikingly induced cells to undergo a prolonged SAC-dependent delay in a metaphase-like state. The delay was characterised by weakened kinetochore-fibre stability, recruitment of Mad2 protein to a few KTs and the occasional loss of individual chromosomes from the metaphase plate. These data indicate that the Ska1/2 complex plays a critical role in the maintenance of a KT-MT attachments and/or SAC silencing.
Best disease, also termed vitelliform macular dystrophy type 2, VMD2, (OMIM #153700), is an autosomal dominant, early onset macular dystrophy associated with a remarkable accumulation of lipofuscin-like material within and beneath the retinal pigment epithelium (RPE). The VMD2 gene mutated in Best disease encodes a 585 amino acid putative transmembrane protein named bestrophin, and is preferentially expressed in the RPE. The protein has a complex membrane topology with 4-6 putative transmembrane domains (TMDs) and is presumably involved in Ca2+-dependent transport of chloride ions across the membrane. The vast majority of known disease-associated alterations are missense mutations nonrandomly distributed across the highly conserved N-terminal half of the protein with clusters near the predicted TMDs. The mechanism connecting Best disease pathology with the identified mutations or the Cl- channel function is not yet clear. To further elucidate the biological function of the bestrophin protein and to identify the molecular mechanisms underlying the disease, a search for interacting partners of bestrophin was performed using the GAL4-based yeast two hybrid system (Y2H). Screening of a bovine RPE cDNA library with various truncated bestrophin baits resulted in the identification of 53 putative interacting partners of bestrophin. However, verification of the interaction has excluded all candidate clones. Our comprehensive Y2H analyses suggest that bestrophin may not be suitable for traditional yeast two hybrid screens likely due to the fact that the protein is integral to the membrane and even fragments thereof may not be transported to the nucleus which is, however a prerequisite for protein interaction in the yeast system. Bestrophin belongs to a large family of integral membrane proteins with more than 100 members identified to date originating from evolutionarily diverse organisms such as mammals, insects and worms. The most distinctive feature of the bestrophin family, besides the invariant RFP (arginine-phenylalanine-proline) domain, is an evolutionarily highly conserved N-terminal region. To clarify the phylogenetic relationship among bestrophin homologues and to identify structural and functional motifs conserved across family members, a bioinformatics/phylogenetic study of the conserved N-terminal region was conducted. Phylogenetic analysis of the bestrophin homologues reveals existence of four evolutionary conserved family members in mammals, with high homology to the human VMD2, VMD2-L1 to L3 proteins. The significant level of protein sequence similarity between divergent species suggests that each of the bestrophin family members has a unique, Chapter One: Summary 2 evolutionarily conserved function and that the divergence of bestrophin into several family members occurred before the divergence of individual mammalian species.
The theoretical work presented in this thesis is concerned with the highest possible oxidation states of the 5d transition metal row. Based on a validation study of several DFT functionals against accurate coupled-cluster CCSD(T) methods we will present calculations on a series of new high oxidation state HgIV species. Quantum-chemical calculations have also been applied to various fluoro complexes of gold in oxidation states +V through +VII to evaluate the previously claimed existence of AuF7. The calculations indicate clearly that the oxidation state (+V), e.g., in [AuF5]2, remains the highest well-established gold oxidation state. Further calculations on iridium in oxidation state (+VII) show that IrF7 and IrOF5 are viable synthetic targets, whereas higher oxidation states of iridium appear to be unlikely. Structures and stabilities of several osmium fluorides and oxyfluorides were also studied in this thesis. It is shown that homoleptic fluorides all the way up to OsF8 may exist. Combining the results of the most accurate quantum-chemical predictions of this thesis and of the most reliable experimental studies, we observe a revised trend of the highest oxidation states of the 5d transition metal row. From lanthanum (+III) to osmium (+VIII), there is a linear increase of the highest oxidation states with increasing atomic number. Thereafter, we observe a linear descent from osmium (+VIII) to mercury (+IV). We will also present a short outlook to the transition metals of the 3d and 4d row and their highest reachable oxidation states.
Visualization of type I immunity using bicistronic IFN-gamma reporter mice in vitro and in vivo
(2006)
IFN-γ is the signature cytokine of Th1 and CD8+ effector cells generated in type I immune responses against pathogens, such as Influenza virus, Sendai virus and the intracellular protozoan parasite Toxoplasma gondii. Understanding the regulation of IFN-γ is critical for the manipulation of immune responses, prevention of immunopathology and for vaccine design. In the present thesis, IFN-γ expression by CD4+ and CD8+ T cells was characterized in detail and the requirement of IFN-γ receptor mediated functions for IFN-γ expression was assessed. Bicistronic IFN-γ-eYFP reporter mice, which allow direct identification and isolation of live IFN-γ expressing cells, were used to visualize IFN-γ expression in vitro and in vivo after infection with the afore mentioned pathogens. Expression of the IFN-γ-eYFP reporter by CD4+ and CD8+ T cells was broadly heterogeneous in vitro and in vivo after infection. Increased expression of the reporter correlated positively with the abundance of IFN-γ transcripts and IFN-γ protein production upon stimulation. eYFP reporter brightness reflected the potential for IFN-γ production, but actual secretion was largely dependent on antigenic stimulation. Increased expression of the reporter also correlated with enhanced secretion of additional proinflammatory cytokines and chemokines and cell surface expression of markers that indicate recent activation. Highly eYFP fluorescent cells were generally more differentiated and their anatomical distribution was restricted to certain tissues. The anatomical restriction depended on the pathogen. IFN-γ expressing CD4+ and CD8+ T cells were generated in IFN-γ receptor deficient reporter mice after infection with Sendai virus or Toxoplasma gondii. However, in the absence of IFN-γ receptor mediated functions, the frequency and brightness of the eYFP reporter expression was altered. Dual BM chimeric mice, reconstituted with wild-type and IFN-γ receptor deficient reporter BM, revealed a T cell-intrinsic requirement for the IFN-γ receptor for optimal IFN-γ expression. Reporter fluorescence intensities were regulated independently of IFN-γ receptor mediated functions. Finally, we propose a model for IFN-γ expression by CD4+ and CD8+ T cells. 2. SUMMARY 10 In summary, the expression of IFN-γ is differentially regulated in CD4+ and CD8+ T cells and after viral or protozoan infections. Additionally, the role of IFN-γ receptor mediated functions for the expression of IFN-γ was determined.
The aim of this study was to assess distribution patterns of articulate brachiopods during the Mesozoic. Exploratory and confirmatory multivariate analyses in this study evaluate whether environmental preferences of brachiopods and bivalves are substantially distinct and whether structure of their communities significantly differ. Specifically, the hypothesis being tested is that differential abundances of Mesozoic brachiopods and bivalves are not related to varying substrate properties only, but also to varying food supply, turbidity and oxygen levels. This hypothesis was evaluated with quantitative data gathered in various field areas and time intervals. They include the Upper Triassic deposits of the West Carpathians and Eastern Alps, the Lower and Middle Jurassic deposits of Morocco, the Middle and Upper Jurassic deposits of the West Carpathians, the Upper Jurassic deposits of the Franconian and Swabian Alb, and the Upper Jurassic deposits of the Swiss Jura. The main conclusion is that brachiopod-dominated communities are characterized by a unique guild structure, with dominance of trophic groups with low metabolic requirements or adapted to nutrient-poor or oxygen-poor conditions. For example, brachiopod co-occured more commonly with epifaunal than with infaunal bivalves in soft-bottom environments. Abundances of brachiopods correlate mostly negatively with increasing proportions of terrigenous admixture (i.e., with increasing amount of land-derived nutrient supply and turbidity).
The functionalities of DNA and RNA are mainly determined by the various interactions between the pairing nucleobases. To understand the complex interplay of the various interactions model systems are needed in which the interstrand pairing is less restricted by the backbone. Such systems are peptide nucleo acids (PNA) in which the sugar phosphate backbone of DNA or RNA is replaced by a peptide backbone. Diederichsen et al. were able to synthesize a large number of systems with an alpha-alanyl backbone to which canonical and non-canonical nucleobases were attached (alpha-alanyl-PNA). These systems formed aggregates with various binding motifs which do not appear in DNA or RNA. Especially the unusual binding motifs would allow a deep insight into the complex interplay of the interactions between nucleobases but the small solubility of alpha-alanyl PNA oligomers hampers the experimental determination of the geometrical arrangement by X-Ray or NMR. Only the overall stability of the various aggregates could be determined by measurements of melting temperatures via UV spectroscopy. Since a detailed knowledge about the geometrical structure and bonding motifs are necessary to obtain insight into the interplay of the various interactions it is the goal of the present work to achieve such information with the help of theoretical approaches. Additionally we are interested in the effects which govern the trends in the stabilities of the systems. This task should be simpler than an investigation of the absolute stabilities since many contributions (e.g. entropic and dynamic effects) can be expected to be similar for similar systems. Consequently, such effects are less important for our goal. For the investigation of all experimentally tested alpha-alanyl-PNA oligomers it was essential to parameterize the noncanonical nucleobases since they were not implemented in the standard version of the Amber4.1 force field. This was achieved by adding the missing parameters to the Amber Force Field. The charges of each nucleobase were determined by the R.E.D program package. The investigation started with the construction of all possible pairing modes for alpha-alanyl-PNA dimer. It could be observed that certain pairing modes were not realizable due to the geometrical arrangement of the dimer and the restriction of the backbone. For other pairing modes a construction was possible, but due to the geometrical restrictions of the backbone the strain in the system is so high that they fall apart during a first geometry optimization. Stable systems were then simulated by various molecular dynamics (MD)-runs. Information about their geometrical arrangements for T=0 K were obtained from geometry optimizations which were started from various points of the MD-run. The resulting geometries were found to be virtually identical. Information about the interactions within a dimer at T=0 K were obtained from a two step procedure in which the effects connected with the nucleobases and the influence of the backbone are determined separately. It was performed for the optimized geometries. In a first step the backbone was removed and the resulting dangling bonds were saturated by methyl groups. The total interaction energy between the nucleobases can now be estimated by the difference between the energy of the complete system and the sum of the energies of the single nucleobases computed at the geometries they take in the whole system. According to the carried out investigation and the resulting correlation of the melting temperature with the calculated stabilization energies the presented method seems to represent a reliable tool for the description of the PNA systems. Despite this success additional experimental verifications of our method are necessary to ensure its applicability. Such verifications could be based on geometrical information obtained via X-Ray or NMR investigations. More detailed data about entropic an enthalpic contribution to the stability of the various complexes would also be very helpful to verify and improve our approach. Such information could be either obtained from a careful analysis of shape of the melting temperature curve or from microcalorimetric investigations. If such tests confirm our predictions the approach could be extended and applied to neighboring fields as for examples beta-alanyl-PNA, DNA or RNA systems with unusual nucleobases. Such information is also necessary to extend our approach in a way that dynamic and/or entropic effects are also taken into account.
The polyspecific organic cation transporters (OCT) are involved in the elimination and distribution of drugs, environmental toxins, and endogenous organic cations including monoamine neurotransmitters. Steroid hormones inhibit organic cation transport by the three OCT subtypes with different affinities showing distinct species difference; for example, the IC50 values for corticosterone inhibition of cation uptake by transporters rOCT1 and rOCT2 are ~150μM and ~4 μM, respectively. By introducing domains and amino acids from rOCT2 into rOCT1, we identified three amino acids in the presumed 10th TMD of rOCT2 which are responsible for the higher affinity of corticosterone in comparison to rOCT1. This is the first study which revealed the components of the binding site for corticosterone in OCTs. The evidence is presented that these amino acids (alanine 443, leucine 447, and glutamine 448 in rOCT1 and isoleucine 443, tyrosine 447, and glutamate 448 in rOCT2) are probably located within the substrate binding region of OCTs since the affinity of transported cations was increased together with the affinity of corticosterone. In the double mutant rOCT1(L447Y/Q448E) the IC50 value for the inhibition of [3H]MPP (0.1 μM) uptake by corticosterone (24 ± 4 μM) was significantly higher compared to the IC50 value for inhibition of [14C]TEA (10 μM) uptake (5.3 ± 1.7 μM), indicating an allosteric interaction between transported substrate and corticosterone. The data suggest that more than one compound can bind simultaneously to the substrate binding region. These results confirm previous suggestion that binding of substrates and inhibitors to OCTs involves interaction with a comparatively large surface that may include multiple binding domains rather than with a structurally restricted single binding site.
Human cytomegalovirus (HCMV) infection causes clinical symptoms in immunocompromised individuals such as transplantant recipients and AIDS patients. The virus is also responsible for severe complications in unborn children and young infants. The species specificity of HCMV prevents the direct study of mechanisms controlling the infection in animal models. Instead, the murine cytomegalovirus (MCMV) is used as a model system. Human and murine CMVs have large double-stranded DNA genomes, encoding nearly 170 genes. About 30% of the genes are committed to essential tasks of the virus. The remaining genes are involved in virus pathogenesis or host interaction and are dispensable for virus replication. The CMV genes are classified in gene families, based on sequence homology. In the present work, the function of two genes of the US22 gene family was analyzed. The MCMV genes m142 and m143 are the only members of this family that are essential for virus replication. These genes also differ from the remaining ten US22 gene family members in that they lack 1 of 4 conserved sequence motifs that are characteristic of this family. The same conserved motif is missing in the HCMV US22 family members TRS1 and IRS1, suggesting a possible functional homology. To demonstrate an essential role of m142 and m143, the genes were deleted from the MCMV genome, and the mutants were reconstituted on complementing cells. Infection of non-complementing cells with the deletion mutants did not result in virus replication. Virus growth was rescued by reinsertion of the corresponding genes. Cells infected with the viral deletion mutants synthesized reduced amounts of viral DNA, and viral late genes were not expressed. However, RNA analyses showed that late transcripts were present, excluding a role of m142 and m143 in regulation of gene transcription. Metabolic labelling experiments showed that total protein synthesis at late times postinfection was impaired in cells infected with deletion mutants. Moreover, the dsRNA-dependent protein kinase R (PKR) and its target protein, the translation initiation factor 2α (eIF2α) were phosphorylated in these cells. This suggested that the m142 and m143 are required for blocking the PKR-mediated shut-down of protein synthesis. Expression of the HCMV gene TRS1, a known inhibitor of PKR activation, rescued the replication of the deletion mutants, supporting the observation that m142 and m143 are required to inhibit this innate immune response of the host cell.
The objective of this Thesis was to progress the understanding of the mechanisms of cuticular uptake into living plant foliage, thereby enabling uptake of important compounds such as pesticides and pollutants to be modelled. The uptake of three model compounds, applied in the presence and absence of surfactants, into the leaves of three plant species (Chenopodium album L., Hedera helix L. and Stephanotis floribunda Brongn) was determined. The results with 2-deoxy-D-glucose (DOG), 2,4-dichlorophenoxy-acetic acid (2,4-D) and epoxiconazole in the presence of surfactants (the polyethylene glycol monododecyl ethers C12EO3, C12EO6, C12EO10, and a trisiloxane ethoxylate with mean ethylene oxide (EO) content of 7.5, all used at one equimolar concentration) illustrated that the initial dose (nmol mm-2) of xenobiotic applied to plant foliage was a strong positive determinant of uptake. Using this new approach for whole plant uptake, uptake on a per unit area basis was found to be related to initial dose of xenobiotic applied, by an equation of the form: Uptake(nmol mm-2) = a [ID]b at time t = 24 hours, where ID is the initial dose or the mass of xenobiotic applied per unit area (M(nmol xenobiotic applied)/A(droplet spread area)). Total mass uptake can then be calculated from an equation of the form: Total Uptake(nmol) = a [ID]b.A. In order to verify this relationship, further studies determined the uptake of three pesticides, applied as commercial and model formulations in the presence of a wide range of surfactants, into the leaves of three plant species (bentazone into Chenopodium album L. and Sinapis alba L., epoxiconazole and pyraclostrobin into Triticum aestivum L.). The results confirmed that the initial dose (nmol mm-2) of xenobiotic applied to plant foliage is a strong, positive determinant of uptake. In a novel approach, further studies used this relationship (nmol mm-2 uptake versus ID; termed the uptake ratio) to establish the relative importance of species, active ingredient (AI), AI concentration (g L-1) and surfactant to uptake. Species, AI, its concentration, and surfactant all significantly affected the uptake ratio. Overall, 88% of the deviance could be explained. More useful was the analysis of the individual xenobiotics, where the models explained 83%, 85%, and 94% of the variance in uptake ratio for DOG, 2,4-D, and epoxiconazole, respectively. In all cases, species, surfactant, and AI concentration significantly affected the uptake ratio. However, there were differences in the relative importance of these factors among the xenobiotics studied. Concentration of AI increased in importance with increasing lipophilicity of AI, while species was much less important for the most lipophilic compound. Surfactant became less important with increasing AI lipophilicity, although it was always important. The preceding studies considered uptake at only one time interval (24 hours). Total uptake after 24 hours can be the same for a compound formulated with different surfactants, but rates of uptake (and therefore rain-fastness and subsequent translocation to target sites) can be quite different. Therefore, there was a requirement to be able to model uptake over time into whole plants. Hence, the objective of further studies was to determine whether a logistic-kinetic penetration model, developed using isolated plant cuticles, could be applied to whole plant uptake. Uptake over 24 hours was determined for three model compounds, applied in the presence and absence of surfactants, into the leaves of two plant species. Overall, the model fitted the whole plant uptake data well. Using the equations developed, based on initial dose, to calculate uptake at 24 hours, in conjunction with the logistic-kinetic model, has significantly progressed our understanding and ability to model uptake. The advantages of the models and equations described are that few variables are required, and they are simple to measure.
In mammals, the pituitary-derived neuropeptide adrenocorticotropic hormone (ACTH) is a major regulator of adrenocortical steroidogenesis and hormone secretion. However, the mechanism by which adrenal growth is governed by pituitary signals and the role of the pituitary in early adrenal development remain to be investigated. In this work the model organism zebrafish was used to elucidate pituitary adrenal interactions during early vertebrate development. The adrenal homologue in zebrafish is located in the head kidney and termed interrenal organ. The work deals with the analysis of pituitary-interrenal interactions by using pituitary mutants, gene-knockdown embryos and pharmacological interventions. As prerequisite to the main study, zebrafish pomc gene was cloned and characterized and the interrenal organogenesis in wild-type zebrafish was analysed.
Clonality analysis in B-Cell Chronic Lymphocytic Leukemia (B-CLL) associated with Richter's syndrome
(2006)
B-cell chronic lymphocytic leukemia (B-CLL) comprises 90% of chronic lymphoid leukemias in Western countries and patients with B-CLL have a heterogeneous clinical course. Approximately 3-5% of B-CLL patients encounter transformation to an aggressive lymphoma, mainly diffuse large B-cell lymphoma (DLBCL) or Hodgkin’s lymphoma (HL) which has been defined as Richter’s syndrome and is associated with a poor clinical outcome. The mutational status of the immunoglobulin heavy chain variable region (IgVH) gene not only implies the developmental stage at which the neoplastic transformation occurs in a given B-cell lymphoma, but also constitutes an important prognostic factor in B-CLL, since B-CLL patients with unmutated IgVH genes usually have a poor clinical outcome. Sparse molecular analyses performed in Richter’s syndrome so far suggest that it can occur in B-CLL patients carrying mutated or unmutated IgVH genes, and tumor cells in DLBCL or HL can be clonally identical to the B-CLL clone or arise as an independent, secondary lymphoma. To determine the clonal relationship between DLBCL or Hodgkin/Reed-Sternberg (HRS) cells and pre-existing B-CLL cells in a larger series, to identify the IgVH gene usage and the mutational status and to explore possible prognostic factors in B-CLL undergoing Richter’s transformation, we utilized a PCR-based GeneScan approach with subsequent sequencing of the IgVH genes. In cases with HRS/HRS-like cells laser capture microdissection (LCM) was employed to isolate these cells. In addition, a thorough morphological and immunohistochemical analysis was performed. In total, specimens from 48 patients were investigated including 40 cases of Richter’s syndrome and additional 8 cases of B-CLL cases with the presence of CD30-positive HRS-like cells. Among 40 cases of Richter’s syndrome, 34 B-CLL cases showed transformation to DLBCL and 6 cases transformed from B-CLL to HL. Sequencing was performed in 23 paired B-CLL and DLBCL cases. In 18 cases, B-CLL and DLBCL were clonally identical, whereas DLBCL developed as a clonally independent neoplasm in 5 patients. Among the clonally related pairs, 11 out of 15 cases carried unmutated IgVH genes in both the B-CLL and DLBCL component, whereas 5 of 6 B-CLL cases that showed transformation to HL carried mutated IgVH genes. HRS cells in two samples and HRS-like cells in one sample were clonally distinct from the B-CLL clone and infected by EBV, whereas one sample of HRS-like cells was related to the clone from the surrounding B-CLL cells and did not express latent membrane protein-1 (LMP1). The VH genes VH3-23, VH3-74, VH1-2 and VH3-9 were overused in B-CLL cases that transformed to DLBCL, whereas VH4-34 and VH3-48 were used in over half of the B-CLL cases with transformation to HL. Immunohistochemical staining of ZAP70 was significantly associated with unmutated IgVH genes in B-CLL cases undergoing Richter’s transformation. Clinical follow-up data could be obtained from 24 patients. The median survival times of B-CLL patients with transformation to DLBCL or HL were 7 and 21 months, respectively. No significantly different survival times were found between clonally related or unrelated cases, or between IgVH-mutated or -unmutated cases. We conclude that in Richter’s transformation, DLBCL can evolve by clonal transformation of the pre-existing B-CLL clone or occur as an independent, clonally unrelated neoplasm. In the majority of cases (78% in our series), B-CLL and DLBCL are clonally identical. In a subset of patients, however, DLBCL develops as an independent secondary neoplasm that is not clonally related to the B-CLL. Clonal transformation into DLBCL predominantly occurs in B-CLL patients with unmutated IgVH genes, whereas most B-CLL patients that show transformation to HL or CD30-positive HRS-like cells carry mutated IgVH genes. The tendency that IgVH-unmutated B-CLL transforms to DLBCL and IgVH-mutated B-CLL transforms to HL implies different transformation pathways in the two subtypes of Richter’s syndrome. In addition, important pathogenetic differences are likely to exist between DLBCL cases derived from a pre-existing B-CLL as compared to de novo DLBCL cases, since de novo DLBCL is usually characterized by mutated IgVH genes. The biased usage of IgVH genes in the two subtypes of Richter’s syndrome suggests a possible role for antigen involvement in tumorigenesis also in B-CLL cases that undergo Richter’s transformation. Finally, EBV-association in the HL variant of Richter’s syndrome occurs more frequently in clonally unrelated secondary malignancies.
Virtually all existing MRI applications require both a high spatial and high temporal resolution for optimum detection and classification of the state of disease. The main strategy to meet the increasing demands of advanced diagnostic imaging applications has been the steady improvement of gradient systems, which provide increased gradient strengths and faster switching times. Rapid imaging techniques and the advances in gradient performance have significantly reduced acquisition times from about an hour to several minutes or seconds. In order to further increase imaging speed, much higher gradient strengths and much faster switching times are required which are technically challenging to provide. In addition to significant hardware costs, peripheral neuro-stimulations and the surpassing of admissable acoustic noise levels may occur. Today’s whole body gradient systems already operate just below the allowed safety levels. For these reasons, alternative strategies are needed to bypass these limitations. The greatest progress in further increasing imaging speed has been the development of multi-coil arrays and the advent of partially parallel acquisition (PPA) techniques in the late 1990’s. Within the last years, parallel imaging methods have become commercially available,and are therefore ready for broad clinical use. The basic feature of parallel imaging is a scan time reduction, applicable to nearly any available MRI method, while maintaining the contrast behavior without requiring higher gradient system performance. PPA operates by allowing an array of receiver surface coils, positioned around the object under investigation, to partially replace time-consuming spatial encoding which normally is performed by switching magnetic field gradients. Using this strategy, spatial resolution can be improved given a specific imaging time, or scan times can be reduced at a given spatial resolution. Furthermore, in some cases, PPA can even be used to reduce image artifacts. Unfortunately, parallel imaging is associated with a loss in signal-to-noise ratio (SNR) and therefore is limited to applications which do not already operate at the SNR limit. An additional limitation is the fact that the coil array must provide sufficient sensitivity variations throughout the object under investigation in order to offer enough spatial encoding capacity. This doctoral thesis exhibits an overview of my research on the topic of efficient parallel imaging strategies. Based on existing parallel acquisition and reconstruction strategies, such as SENSE and GRAPPA, new concepts have been developed and transferred to potential clinical applications.
DNA microarrays have become a standard technique to assess the mRNA levels for complete genomes. To identify significantly regulated genes from these large amounts of data a wealth of methods has been developed. Despite this, the functional interpretation (i.e. deducing biological hypothesis from the data) still remains a major bottleneck in microarray data analysis. Most available methods display the set of significant genes in long lists, from which common functional properties have to be extracted. This is not only a tedious and time-consuming task, which becomes less and less feasible with increasing numbers of experimental conditions, but is also prone to errors, since it is commonly done by eye. In the course of this work methods have been developed and tested, that allow for a computerbased analysis of functional properties being relevant in the given experimental setting. To this end the Gene Ontology was chosen as an appropriate source of annotation data, because it combines human-readability with computer-accessibility of the annotations term and thus allows for a statistical analysis of functional properties. Here the gene-annotations are integrated in a Correspondence Analysis which allows to visualize genes, hybridizations and functional categories in a single plot. Due to the increasing amounts of available annotations and the fact that in most settings only few functional processes are differentially regulated, several filter criteria have been developed to reduce the number of displayed annotations to a set being relevant in the given experimental setting. The applicability of the presented visualization and filtering have both been validated on datasets of varying complexity. Starting from the well studied glucose-pathway in S. cerevisiae up to the comparison of different tumor types in human. In both settings the method generated well interpretable plots, which allowed for an immediate identification of the major functional differences between the experimental conditions [90]. While the integration of annotation data like GO facilitates functional interpretation, it lacks the capability to identify key regulatory elements. To facilitate such an analysis, the occurrence of transcription factor binding sites in upstream regions of genes has been integrated to the analysis as well. Again this methodology was biologically validated on S. cerevisiae as well human cancer data sets. In both settings TFs known to exhibit central roles for the observed transcriptional changes were plotted in marked positions and thus could be immediately identified [206]. In essence, integration of supplementary information in Correspondence Analysis visualizes genes, hybridizations and annotation data in a single, well interpretable plot. This allows for an intuitive identification of relevant annotations even in complex experimental settings. The presented approach is not limited to the shown types of data, but is generalizable to account for the majority of the available annotation data.
Human caretaker genes play a central role in the DNA damage response. Their defects cause a number of rare diseases which show genetic instability and increased propensity to malignant cell growth. The first of these diseases to be described in this thesis is Fanconi anemia (FA), a rare chromosome instability disorder with recessive inheritance characterized by progressive bone marrow failure, variable congenital malformations, and cancer predisposition. There are at least 13 FA complementation groups (FA-A, B, C, D1, D2, E, F, G, I, J, L, M and N), each representing mutations in a distinct gene. To date, except FANCI all the corresponding genes have been identified, denoted as FANC-A, B, C, D1/BRCA2, D2, E, F, G, J/BRIP1/BACH1, L/PHF9, M/Hef and N/PALB2.Further information is provided in chapters 1 and 2. FA cells are characterized by high sensitivity to DNA crosslinking agents and to elevated oxygen tension, but it is controversial whether they are also radiosensitive. Systematic testing (chapter 3) of primary skin fibroblast cultures from all currently known FA complementation groups revealed no increased sensitivity towards ionizing radiation (IR) and ultra-violet light (UV) when growing cells at physiological (5% v/v) oxygen levels. Despite considerable interstrain variations FA cells showed no systematic differences to cell cultures derived from healthy controls, whereas positive controls (Ataxia telangiectasia and Cockayne syndrome) proved highly sensitive to IR or UV. Lack of radiosensitivity was also shown for the FANCD2 gene, a central gene in the FA/BRCA pathway whose mutational inactivation was studied in a large patient cohort. FA patients excluded previously from complementation groups FA-A, -C, E, F, G or L were screened for mutations in FANCD2. Even though mutation analysis of FANCD2 is complicated by the presence of pseudogene regions, biallelic FANCD2 mutations were identified in a series of 32 patients (chapter 4). The predominant types of mutations result in aberrant splicing causing exon skipping, exonisation of intronic sequence, activation of cryptic and creation of new 3´ splice sites. Many alleles were recurrent and could be associated with ethnicity. Interestingly, residual FANCD2 protein was observed in all available patient cell lines, and functionality was indicated by the presence of the monoubiquitinated FANCD2 isoform. This suggests that viability of FA-D2 patients depends on the presence of hypomorphic or leaky mutations. In chapter 5 the worldwide second FA patient belonging to complementation group FA-L is reported. Genetic analysis of patient derived fibroblasts revealed heterozygosity for a 5-bp deletion (exon 7) and a missense substitution (exon 11). In contrast to the tested fibroblasts two independent lymphoid cell lines proved resistant to the DNA crosslinking agent mitomycin C and showed proficient FANCD2 monoubiquitination. The functional reversion due to a compensating mutation in the splice acceptor site results in aberrant splicing and the restoration of the open reading frame. However, the revertant mosaicsm was restricted to the lymphatic cell lines such that there was no clinical improvement involving the other hematopoietic cell lineages, and bone marrow transplantation was required to treat the patients bone marrow failure. A direct link of Fanconi anemia to other DNA repair processes was provided by the identification of the BRCA1 interacting protein 1, BRIP1/BACH1, as a genuine FA gene (chapter 6). Genetic mapping of consanguineous Inuit families resulted in the identification of truncating mutations in BRIP1. In contrast to most of the other FA patients FANCD2 monoubiquitination was intact, linking these patients to complementation group FA-J. Biallelic mutations in BRIP1 were found in eight additional patients, one of whom was assigned previously to FA-J by somatic cell fusion. Therefore it could be shown that the postulated FANCJ gene is identical with BRIP1. This finding emphasizes the close connection between the BRCA- and the FA-family of genes, both involved in the DNA damage response. Biallelic mutations in BRCA2/FANCD1 cause a severe form of Fanconi anemia with childhood malignancies. Recently, a BRCA2 interacting protein was identified as a “partner and localizer of BRCA2” (PALB2) which confers cellular MMC resistance. A candidate gene approach revealed biallelic mutations in seven FA patients that developed solid tumors in early childhood (chapter 7). Patient cells show no or little PALB2 protein, lack of MMC induced RAD51 foci formation, and high chromosomal instability. Transduction of PALB2 cDNA complemented the MMC sensitive phenotype. Therefore, biallelic mutations in PALB2 cause a new subtype of FA, denoted as FA-N, which is connected with a high and early cancer risk. With respect to one of the most prominent but least understood caretaker gene syndromes, Fanconi anemia, this thesis has expanded our knowledge as follows: 1. refutation of major cellular radiosensitivity of FA cell lines regardless of complementation group, 2. detection of hypomorphic mutations and residual protein levels as a prerequisite for viability of the FANCD2 gene, 3. description of the worldwide second patient belonging to complementation group FA-L whose lymphocytes exhibit a novel type of somatic reversion, 4. participation in the discovery and functional characterization of two novel FA genes (FANCJ and FANCN). The last chapter of the thesis deals with a DNA repair pathway that is activated following exposure to ionizing radation. One of the central proteins responding to radiation-induced DNA damage is the product of the ATM gene which signals to a myriad of other proteins in response to DNA double strand breaks, including the NMR complex. This complex formed by the NBS1/MRE11/RAD50 proteins is thought to act as a specifi c sensor of DNA double-strand breaks. Mutations of MRE11 and NBS1 are associated with the radiation sensitivity syndromes Ataxia-telangiectasia-like disorder (AT-LD) and Nijmegen breakage syndrome (NBS), respectively. Chapter 8 presents the first ever identified patient with RAD50 deficiency due to biallelic germline mutations in the RAD50 gene. An 18-year-old German girl who has a variant form of NBS without immunodeficiency was found to be compound heterozygous for a nonsense mutation and the loss of the natural termination signal in the RAD50 gene. RAD50 protein expression was reduced to less than one tenth of normal in her fibroblasts and lymphoblastoid cells. At the nuclear level, RAD50 deficiency was associated with a high frequency of spontaneous chromatid exchanges and with the failure to form MRE11 and NBS1 nuclear foci in response to irradiation. ATM autophosphorylation, phosphorylation of p53 at serine 15 and the transcriptional induction of p21/WAF1 mRNA were reduced, and there was no evidence for Ser343 phosphorylation of NBS1 in RAD50 defi cient cells following irradiation. These defects could be complemented by expression of wildtype RAD50 cDNA. Our data shows that RAD50 modulates, like NBS1 and MRE11, the ATM-mediated DNA damage response and the G1/S cell cycle checkpoint. In addition, RAD50 appears to be required for nuclear localization of MRE11, and for NBS1 focus formation, underlining its importance for the proper function of the NMR complex. Owing to the studies performed within the framework of this thesis, RAD50 deficiency can now be added to the growing list of human caretaker gene syndromes with pronounced radiosensitivity that is distinctive at both the cellular and the clinical level from deficiencies involving the other members of the NMR complex.
Trinidad, V.S. Naipaul’s native island, is consistently represented in the 2001 Nobel Prize winner’s fictional works, above all in "The Mystic Masseur" (1957), "The Suffrage of Elvira" (1958), "Miguel Street" (1959), "A House for Mr Biswas" (1961), "A Flag on the Island" (1967), "The Mimic Men" (1967), "In a Free State" (1971), "Guerrillas" (1975), "The Enigma of Arrival" (1987) and "A Way in the World" (1994). The present dissertation analyses representations of Trinidad as “play-culture” in the aforementioned writings by initiating a methodological dialogue between postcolonial/cultural studies on the one hand and performance studies, play theory, as well as cultural anthropology on the other hand. The study is divided into three parts corresponding to the three main facets of Trinidad as it appears in Naipaul’s fiction: firstly, as a childish world; secondly, as a festive place and thirdly, as a playground for the western imagination. The image of Trinidad as a childish space stands at the intersection of the autobiographical genre with the colonial/Social Darwinist discourse of the so-called “child races”. In both cases we have to do with a cultural construct of childhood whose main stereotypical features are smallness, imitation, irrationality and of course, playfulness. The second part of the dissertation focuses on the importance of rituals and festivals in shaping up Indian and African identities in Trinidad. Roughly, Hindu rituals are capital means to create diasporic Indias, whereas Carnival is a powerful symbol of the Afro-Trinidadian community. Nevertheless, they carry the potential of becoming genuine liminal spaces, where ethnic boundaries are transgressed. The third section is devoted to a discourse of play as imagination. In this respect, Trinidad appears as an adventure playground where the Westerner projects his/her desires, sometimes under the mask of scientific respectability. The eye of the European sees the tropical island as an exotic Garden of Eden, as an aesthetic space with strong pictorial and theatrical qualities. But if Trinidad occurs as an artistic, a fictional object, then Naipaul’s novels and stories describing it are fiction about fiction, and so have a very important metafictional component. At this stage, since metafiction is also a capital element of postmodernism, I trace back Naipaul’s ludic metaphors to the present-day Zeitgeist, pointing out the postmodern elements in his texts dealing with Trinidad.
In spite of David Lodge’s rejection of the theories labelled as poststructuralist, this thesis proves that his novels can be interpreted from a Foucauldian perspective. The concept of discourse, seen by the French philosopher as intricately linked with knowledge, power and truth, enables the distinction of four main discourses in Lodge’s novels, religious, gender, ethnic and literary. The analysis reveals that in David Lodge’s fiction there is a perpetual struggle for power illustrating Foucault’s idea of the interdependence between power, knowledge, truth and discourses circulated by institutions.