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This thesis focuses on the investigation of the electronic structure of amino acids and
salts in aqueous solution using X-ray spectroscopic methods. Both material groups are
of fundamental importance with regards to many physiological reactions, especially
for the Hofmeister effect which describes the solubility of proteins in salt solutions.
Hence, the investigation of the electronic structure of amino acids and the influence of
ions on the hydrogen bonding network of liquid water are important milestones to a
deeper understanding of the Hofmeister series.
Besides investigating the electronic structure of amino acids in aqueous solution,
the spectra were used to develop a building block model of the spectral fingerprints of
the functional groups and were compared to spectral signatures of suitable reference
molecules. In the framework of this thesis, it is shown that the building block approach
is a useful tool with allows the interpretation of spectral signatures of considerably
more complex molecules
In this work, the focus lies on the investigation of the occupied and unoccupied
electronic states of molecules in solid state, as well as in aqueous solution. Hereby,
different X-ray spectroscopic methods were applied. X-ray emission spectroscopy
(XES) was used to probe the occupied electronic structure of the solution, while the
unoccupied electronic structure was addressed by using X-ray absorption spectroscopy
(XAS). Finally, resonant inelastic X-ray scattering (RIXS) as a combination of XAS
and XES measurements provides the combined information about the unoccupied and
occupied molecular levels. The element specific character of the three measurement
methods is a feature which allows the investigation of the local electronic structure of
a single functional group. With RIXS, also non-equivalent atoms of the same element
can be addressed separately.
Within this thesis firstly, a library of the XE spectra of all 20 proteinogenic amino
acids in zwitterionic form is presented. From this sample-set XES fingerprints of
the protonated alpha-amino group NH3+ and the deprotonated carboxylic group COO- were evaluated and used to identify the XES fingerprints of the nitrogen and oxygen
containing functional groups of the side chains of the amino acids. The data is discussed
based on a building block approach. Furthermore, the XE spectra of the functional
groups of lysine and histidine, namely the NH2 group and the C3N2H4 ring structure,
are both compared to XE spectra of suitable reference molecules (imidazole, ammonia
and methylamine). It is found that the XE and RIXS spectra of the side chains of lysine
and histidine show large similarities to the XE spectra of the reference molecules. This
agreement in the XE and RIXS spectra allows a qualitative investigation of XE and
RIXS spectra of more complex amino acids using the XE and RIXS spectra of suitable
reference molecules.
The chemical structure of histidine and proline is quite different from the structures
of the other proteinogenic amino acids. Due to the unique chemical structure of
the side chain which in both cases consists of a heterocyclic ring structure, these two
amino acids were investigated in more detail. Zubavichus et al. [1] have shown that
amino acids are decomposing while exposed to X-ray radiation of the experiment. The
damage is irreversible and molecular fragments can adsorb on the membrane of the
experimental setup. This contamination can also create a spectral signature which
then overlaps with the signal of the solution and which complicates the interpretation
of the data. To record spectra which are free from contributions of adsorbed molecular
fragments on the membrane, the adsorption behavior was investigated.
In contrast to the solid phase in which the amino acids are present as salts in one
electronic conformation, the charge state of the amino acids can be manipulated in
aqueous solution by tuning the pH-value. By doing this, all possible charge states are
accessible (cation, anion, zwitterion). In this work it is shown that also the spectra
of the different charge states can be modeled by the spectra of suitable reference
molecules using the building block approach. The spectral changes occurring upon
protonation and deprotonation of the functional groups are explored and verified by
comparing them to theoretical calculations.
The comparison with measurements of pyrrolidine show that the electronic structure
which surrounds the nitrogen atom of proline is strongly influenced by the
ring structure of the side chain. Furthermore, the proline, pyrrolidine, and histidine
molecules are also degrading during the liquid sample measurements. This can be
observed by the detection of a new spectral component which increases with the
measurement time originating from the window membrane. In all cases, the speed of
the agglomeration of molecular fragments at the membrane was observed to be highly
sensitive to the pH value of the solution.
To understand the Hofmeister series, also the impact of the salt ions have to be
investigated. In this study the influence of potassium chloride (KCl) on the hydrogen
bond network of water was studied by using non-resonantly excited XES as well as
RIXS. A decreased dissociation of hydrogen molecules and changes in the molecular
vibrations could be detected. These changes were interpreted with a molecular
reorganization of the water molecules and a decreased number of hydrogen bonds.
This thesis was dedicated to the studies of the electronic and chemical properties of liquids and solutions using soft x-ray spectroscopies. The used photon-in-photon-out methods namely x-ray absorption spectroscopy (XAS), x-ray emission spectroscopy (XES), and resonant inelastic x-ray scattering (RIXS) appeared to be an excellent choice for these studies. In the framework of this thesis, the necessary experimental setup for using the above mentioned experimental techniques on liquids was developed. Hereby, a new flow-through liquid cell was introduced which simplifies the studies of liquids and solutions. The cell design is very flexible and thus can be modified for gases and liquid/solid interfaces. With this cell it is possible to study the samples under well-controlled conditions (temperature and flow rate). The novel flow-through liquid cell is part of the new SALSA synchrotron endstation including an electron analyzer and a novel high-resolution, high-transmission soft x-ray spectrometer. The latter makes it possible to measure two-dimensional RIXS maps in a very short time, which include the full excitation and emission information in one plot. Making use of the new instrumentation, a variety of different liquids and solutions were investigated. As first system, aqueous solutions of sodium hydroxide (NaOH) and sodium deuteroxide (NaOD) were investigated. In the XAS as well as in the XES spectra a pronounced concentration dependence was found. At non-resonant energies, the spectra are dominated by the solvent and thus look similar to water. Making use of the pre-pre-edge in the absorption spectra which can exclusively be attributed to OH- / OD- it was possible to extract the resonant emission spectra of the ions which show an indication for proton dynamics during the core-hole lifetime. For the solid state NaOH XES spectra it was possible to reveal a high energetic shoulder and a low energetic shoulder at the high energy emission feature. These shoulders can be assigned to self-dissociation processes where OH- forms O2- ions and H2O. The study of NaOH was also of interest for the studies of the amino acids, which were in the focus of the next part, since the pH-values of the respective solutions were controlled by NaOH. In the next part of this thesis, amino acid solutions were investigated. Amino acids are the building blocks of peptides and proteins and thus important for life science. The investigated representatives were glycine, the simplest amino acid, and lysine, an amino acid with two amine groups. Both amino acids react on pH-value changes at the amine group where the local environment at the nitrogen atom changes (NH2 ↔ NH3+). A strong change of the spectra induced by this protonation/deprotonation could be found. Furthermore, for low pH-values (protonated amine groups) the amine groups are influenced by strong proton dynamics. First DFT calculations confirm the dissociation model of the amino acids. Qualitatively the high energy peak in the N K XES spectra can be attributed to the deprotonated amine group and the low energy area for the protonated amine group. Besides amino acids, alcohols and acids are important in biological processes. Therefore, the smallest alcohol (methanol) and the smallest carboxylic acid (acetic acid) were under investigation. For the liquid methanol XES spectra a very good agreement with DFT calculations of gas phase methanol could be found. This observation suggests that the influence of the environment (hydrogen bonding) on the spectra is small. The achieved spectra are in good agreement with DFT calculations found in literature. It was possible to selectively excite the two non-equivalent oxygen atoms in acetic acid and to reveal the carboxyl specific C K XES. The carbon XAS spectra showed strong differences compared to gas phase measurements which might be a hint for the influence of the hydrogen bond network. The investigation of the electronic and chemical properties of liquids and solutions is a very young field of research and the results presented in this thesis show that it is a very interesting topic. The presented results can be seen as the fundamental frame work for all following studies. With the understanding of basic, i.e., simple, systems as shown in this work it will be possible to understand complex biological systems in their native environment, e.g., peptides and proteins, which are the building blocks of life.