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Institute
- Theodor-Boveri-Institut für Biowissenschaften (21)
- Institut für Physikalische und Theoretische Chemie (6)
- Physikalisches Institut (6)
- Institut für Virologie und Immunbiologie (5)
- Institut für Anorganische Chemie (4)
- Institut für Informatik (4)
- Institut für Molekulare Infektionsbiologie (4)
- Institut für Mathematik (3)
- Institut für Organische Chemie (3)
- Institut für Pharmakologie und Toxikologie (3)
RS1, a gene product of RSC1A1, is critically involved in cell density-dependent transcriptional down-regulation of SGLT1 in LLC-PK1 cells and in the post-transcriptional down-regulation of SGLT1 in small intestine. RS1 inhibits the release of SGLT1 containing vesicles from the trans-Golgi network and migrates into the nucleus where it inhibits transcription of SGLT1. In the present work we identified a novel 21 amino acids-long nonconventional nuclear localization sequence (RS1 NLS) in porcine RS1 (pRS1) that is necessary and sufficient for nuclear targeting of pRS1. RS1 NLS is framed by two consensus sequences for phosphorylation which are responsible for confluence-dependent regulation of RS1 NLS: a casein kinase 2 (CK2) site in position 348 and a protein kinase C (PKC) site in position 370. Confluence-dependent nuclear targeting was observed with amino acids 342-374 (R-NLS-Reg). Mutation analysis suggested that nuclear targeting is blocked by phosphorylation of serine 370 (PKC) and that phosphorylation of serine 348 (CK2) prevents phosphorylation of serine 370. Because CK2 is down-regulated and PKC is up-regulated during confluence of LLC-PK1 cells, our data suggest that nuclear localization coordinates cell density-dependent changes in transcriptional and post-transcriptional inhibition of SGLT1 expression.
1. Oviposition site selection is crucial for the reproductive success of herbivorous insects. According to the preference–performance hypothesis, females should oviposit on host plants that enhance the performance of their offspring. More specifically, the plant vigour hypothesis predicts that females should prefer large and vigorously growing host plants for oviposition and that larvae should perform best on these plants. 2. The present study examined whether females of the monophagous leaf beetle Cassida canaliculata Laich. (Coleoptera: Chrysomelidae) prefer to oviposit on large host plant individuals of the meadow clary and whether large host plants are of higher nutritional quality than small host plants. Subsequently, it was tested whether the female preference correlates with offspring performance and survival. 3. In the field, females preferred large host plant individuals for oviposition and host plant quality, i.e. leaf nitrogen content, was significantly higher in leaves of large than of small host plants. 4. In the laboratory, larval development time was shorter on leaves of large host plant individuals than on small host plant individuals, but this could not be shown in the field. 5. However, a predator-exclusion experiment in the field resulted in a higher survival of larvae on large host plants than on small host plants when all predators had free access to the plants. On caged host plants there was no difference in survival of larvae between plant size categories. 6. It is concluded that females of C. canaliculata select oviposition sites that enhance both performance and survival of their offspring, which meets the predictions of the plant vigour hypothesis.
The present thesis reports about vibrational and quantum chemical investigations on model systems undergoing photochemical processes and pharmaceutically active compounds, respectively. Infrared (IR) and Raman spectroscopy were applied for the characterization of the ground state molecular structure. Moreover, resonance Raman (RR) spectra contain additional information about the resonantly enhanced excited state molecular structure. A quantitative resonance Raman intensity analysis in conjunction with the simultaneous simulation of the absorption spectra by means of time-dependent propagation methods was accomplished in order to extract valuable information about the excited state molecular structures of the investigated systems. Surface enhanced Raman scattering (SERS) allows one to determine the interaction and adsorption site of active agents on a metal substrate. Furthermore, density functional theory (DFT) and potential energy distribution (PED) calculations were carried out for an exact assignment of the vibrational spectra. Complete active space self consistent field (CASSCF) and configuration interaction (CI) calculations for some model systems were also performed to assess the experimental results on the excited state potential surfaces. The fundamentals of resonance Raman spectroscopy are treated in detail, describing the physical processes and emphasizing the theoretical methodologies which allow one to obtain the information about the resonantly excited state via an RR intensity analysis. The Brownian oscillator model to determine the solvent reorganization energy is briefly presented. Furthermore, the SERS enhancement mechanisms and selection rules to determine the orientation of the molecules adsorbed on the metal substrate are discussed. The Hartree-Fock approach to calculate the ground state geometry is expatiated, and the basic characteristics of the CI and CASSCF calculations are specified. The chapter ends with a short description of the DFT calculations. Chapter 4 deals with the investigation of the excited state intramolecular proton transfer of the model system, 1-hydroxy-2-acetonaphthone (HAN). The vibrations showing the highest displacement parameters correspond to stretching and in-plane deformation modes of the naphthalene ring and the conjugated carbonyl group, while the OH stretching mode exhibits no observable enhancement. The cooperative effect of the skeletal vibrations reduces the distance between the carbonyl and hydroxyl oxygen atoms in accordance with a general electron density redistribution. Hence, the leading force in the proton transfer process is the increase in electron density on the carbonyl group and the decrease of the negative charge on the hydroxyl oxygen. In chapter 5 the structural and vibrational characteristics of the organic mixed valence system N,N,N’,N’-tetraphenylphenylenediamine radical cation (1+) are discussed. The resonance Raman measurements showed that at least eight vibrational modes are strongly coupled to the optical charge transfer process in (1+). These Franck-Condon active modes were assigned to symmetric vibrations. The most enhanced band corresponds to the symmetric stretching mode along the N-phenylene-N unit and exhibits the largest vibrational reorganization energy. Nevertheless, symmetric stretching modes of the phenylene and phenyl units as well as deformation modes are also coupled to the electronic process. The total vibrational reorganization energy of these symmetrical modes is dominant, while the solvent induced broadening and reorganization energy are found to be small. Hence, (1+) adopts a symmetrical delocalized Robin-Day Class III structure in the ground state. Chapter 6 reports about a vibrational spectroscopic investigation of a model organic photorefractive thiophene derivative, 2-(N,N-diethylamino)-5-(2’,2’-dicyanovinyl)-thiophene. The geometry of the first excited state were optimized and the FC parameters were calculated using the configuration interaction with single excitations method. These calculations show that the contribution of the zwitterionic structure to the excited state is significantly higher than in the ground state. The resonance Raman spectra indicate that several stretching modes along the bonds connecting the donor and acceptor moieties as well as the S-C stretching vibrations are enhanced. Chapter 7 presents the vibrational analysis of an aziridinyl tripeptide, a cysteine protease inhibitor active drug. The vibrational analysis reveals stronger H-bonding of the aziridine NH unit in the solid state of the aziridinyl tripeptide than in the liquid electrophilic building block, indicating medium strong intermolecular H-bond interactions in the crystal unit. The amide hydrogen atoms of the aziridinyl tripeptide are involved in weaker H-bonds than in an epoxide analogon. Furthermore, the characteristic vibrational modes of the peptide backbone were discussed. Chapter 8 reports on the adsorption mechanism of two related anti-leukemia active agents, 6-mercaptopurine (6MP) and 6-mercaptopurine-ribose (6MPR) on a silver colloid. Both molecules adsorb through the N1 and possibly S atom on the metal surface under basic conditions. The SERS spectra recorded for acidic pH values showed that the ribose derivative exhibits a different adsorption behavior compared to the free base. 6MP probably adsorbs on the silver sol through the N9 and N3 atoms, while 6MPR interacts with the surface via the N7 and probably S atoms. Around critical biological concentrations and pH values i.e. at low concentrations and almost neutral condition (pH 7-9), 6MPR interacts with the substrate through both N7 and N1 atoms, possibly forming two differently adsorbed species, while for 6MP only the species adsorbed via N1 was evidenced.
We examined the regulation of NFATc1 in different lymphomas and observed an inversed correlation between the methylation status and expression of NFATc1. Our data demonstrate that aberrant DNA methylation associated with chromatin remodeling within nfatc1 locus is a major mechanism for the repression of NFATc1 expression, suggesting that the DNA methylation-mediated transcriptional silencing of NFATc1 may be a critical event in the tumorogenesis of ALCLs and cHLs. Furthermore, the DNA methylation of human nfatc1 promoter region could be used as a novel biomarker of tumor progression. Our results indicate a close link between the loss of immunoreceptor signaling and NFATc1 expression in human lymphomas. For both ALCLs and cHLs, defects in immunoreceptor signaling have been described which result in a loss of receptor-mediated gene expression programs (Schwering et al., 2003; Bonzheim et al., 2004; Marafioti et al., 2004). In T cells, one indicator gene of these programs appears to be the nfatc1 gene whose expression is controlled by TCR signals (Chuvpilo et al., 2002a). In contrast, in T cells NFATc1 expression is unaffected by TCR signals, and NFATc2 was found to be expressed at normal levels in ALCLs and cHLs (L.K., unpubl. data). Moreover, the activity of NF-kappaB factors which can bind to certain NFAT binding sites and share a distantly-related DNA binding domain with NFATs is strongly elevated in cHL cells (Bargou et al., 1997; Hinz et al., 2001; Hinz et al., 2002) suggesting that NFATs and NF-kappaBs exert very different effects on generation and maintenance of Hodgkin’s lymhomas. However, it should be mentioned that in Burkitt’s and further B cell lymphomas in which NFATc1 proteins are strongly expressed and controlled by receptor signals (Kondo et al., 2003), they could exert a promoting function in tumor development. The genes of p53 family members p63 and p73 are prominent examples for mammalian genes whose products can act both as oncoproteins and tumor suppressor genes (Hibi et al., 2000; Stiewe and Putzer, 2002), and it is likely that more genes exist which encode both tumor suppressors and oncoproteins. It remains to be shown whether the nfatc1 gene is one of them.
An exhaustive discussion of constraint qualifications (CQ) and stationarity concepts for mathematical programs with equilibrium constraints (MPEC) is presented. It is demonstrated that all but the weakest CQ, Guignard CQ, are too strong for a discussion of MPECs. Therefore, MPEC variants of all the standard CQs are introduced and investigated. A strongly stationary point (which is simply a KKT-point) is seen to be a necessary first order optimality condition only under the strongest CQs, MPEC-LICQ, MPEC-SMFCQ and Guignard CQ. Therefore a whole set of KKT-type conditions is investigated. A simple approach is given to acquire A-stationarity to be a necessary first order condition under MPEC-Guiganrd CQ. Finally, a whole chapter is devoted to investigating M-stationary, among the strongest stationarity concepts, second only to strong stationarity. It is shown to be a necessary first order condition under MPEC-Guignard CQ, the weakest known CQ for MPECs.
The analysis of real data by means of statistical methods with the aid of a software package common in industry and administration usually is not an integral part of mathematics studies, but it will certainly be part of a future professional work. The present book links up elements from time series analysis with a selection of statistical procedures used in general practice including the statistical software package SAS Statistical Analysis System). Consequently this book addresses students of statistics as well as students of other branches such as economics, demography and engineering, where lectures on statistics belong to their academic training. But it is also intended for the practician who, beyond the use of statistical tools, is interested in their mathematical background. Numerous problems illustrate the applicability of the presented statistical procedures, where SAS gives the solutions. The programs used are explicitly listed and explained. No previous experience is expected neither in SAS nor in a special computer system so that a short training period is guaranteed. This book is meant for a two semester course (lecture, seminar or practical training) where the first two chapters can be dealt with in the first semester. They provide the principal components of the analysis of a time series in the time domain. Chapters 3, 4 and 5 deal with its analysis in the frequency domain and can be worked through in the second term. In order to understand the mathematical background some terms are useful such as convergence in distribution, stochastic convergence, maximum likelihood estimator as well as a basic knowledge of the test theory, so that work on the book can start after an introductory lecture on stochastics. Each chapter includes exercises. An exhaustive treatment is recommended. This book is consecutively subdivided in a statistical part and an SAS-specific part. For better clearness the SAS-specific part, including the diagrams generated with SAS, always starts with a computer symbol, representing the beginning of a session at the computer, and ends with a printer symbol for the end of this session. This book is an open source project under the GNU Free Documentation License.
The plant cuticle as an interface between the plant interior and the adjoining atmosphere plays an important role in any interaction between the plant and its environment. Transport processes across the cuticles were the object of countless research since many decades. However, bulk of the work done was focused on transport of lipophilic molecules. It is highly plausible to examine the penetration of lipophilic compounds, since the cuticle is dominated by lipophilic compartments itself, and the most crop protection agents have lipophilic character. As a result of this research, cuticular transport of lipophilic compounds is relatively well understood. Since several years, examinations were expanded on transport of hydrophilic molecules. In the present study, a direct comparison was made between transport properties of lipophilic and hydrophilic compounds, which allows an objective assessment of the mechanism governing their penetration. The results of this present study debunked the existence of two different pathways across isolated cuticles of Hedera helix (English ivy), a lipophilic and a hydrophilic pathway. This finding was supported by examinations regarding to accelerator and temperature effects on the mobility of both pathways, because the hydrophilic path is insensitive to them - in contrary to the lipophilic one. The lipophilic pathway is rigorously restricted to lipophilic molecules and the hydrophilic pathway is only accessible for hydrophilic molecules. Uncharged hydrophilic compounds can cross the cuticle even the molecules are of relatively large dimensions. In contrast to that, dissociable compounds with a molar volume higher than 110 cm³ mol-1 are excluded from cuticular penetration. Differences in the mobility of uncharged and dissociable molecules might be a hint towards the chemical nature of the polar pathways. It is assumed, that both, cellulose and pectin fibrils, traverse the cuticle which are originated from the epidermal cell wall. While uncharged carbohydrates might be able to penetrate across a pathway made up of cellulose and pectin, dissociated amino acids might be restricted to the cellulose path. This could be a plausible explanation for the higher mobility and the higher cuticle/water partition coefficients of the carbohydrates compared with the amino acids. A hydrophilic pathway was found with isolated grapevine cuticles, too. The apparent size selectivity of the hydrophilic pathway implies transport via narrow pores. From the present data, a mean pore radius of 0.31 nm (H. helix) or rather 0.34 nm (V. vinifera) was calculated. The absolute number of pores per cm² is 1.1 x 109 for H. helix and 3.3 x 109 for V. vinifera cuticles. This finding and the enlarged pore size distribution of grapevine cuticles might be an explanation for the transport of uncharged and dissociable hydrophilic compounds of higher molar volume like paraquat dichloride - in contrast to ivy membranes Wax extraction of ivy membranes uncovers additional pores, which explains the increased mobilities of the hydrophilic compounds across dewaxed membranes. From these extensive measurements it is very conspicuous, that the bulk of cuticular water transpiration occurs via the polar pathway. Since the work was focused on cuticular penetration of primary metabolites like amino acids and carbohydrates, a mechanistic explanation of leaching processes is obtained, simultaneously. In cuticular research, an inconsistent terminology regarding the transport path of the hydrophilic compounds was used. The term ‘hydrophilic pathway’ is definitely correct, since it makes no statement with regard to the shape of this path. In contrast to that, the terms ‘polar pore’ or ‘aqueous pore’ could imply that there is a tube or rather a water-filled tube traversing the cuticle. However - at this point of time – the imagination about the shape of this path is a pathway across interfibrilar gaps within polysaccharide strains. The proposed diameter of these interfibrilar gaps fits very well to the diameter determined in this study. Therefore, the imagination of a pore is not unfounded, but it is a very narrow pore, definitely. Additionally, this pathway is a very straight pathway which corresponds to this simplified imagination. An expanded study was done with paraquat dichloride, which was applied as aqueous droplets on grapevine cuticles. It is assumed that these model membranes reflect transport properties which are very close to that of relevant crops and weeds. The predominating parameter for paraquat penetration is the moisture, either originated from a relative humidity of at least 75% or provided by added chemicals. There is a tendency for good suitability of hygroscopic additives. Increased paraquat penetration was also obtained by raised concentrations and removal of the cuticular waxes.
This thesis contributes to the field of silicon chemistry, with a special emphasis on the chemistry of penta- and hexacoordinate silicon.The spirocyclic zwitterionic Lambda5Si-silicates 1–6 with a (2,2,6,6-tetramethylpiperidinio)- methyl group and two identical bidentate chelate ligands derived from glycine, (S)-alanine, (S)-phenylalanine, (S)-valine, (S)-tert-leucine, or (S)-proline bound to the silicon(IV) coordination center were synthesized and structurally characterized for the first time.The hitherto unknown spirocyclic zwitterionic Lambda5Si-silicates 7–12 with an (ammonio)- methyl group and two identical bidentate chelate ligands derived from (S)-lactic acid, (S)-3- phenyllactic acid, or (S)-mandelic acid were synthesized and structurally characterized in the solid state (elemental analyses (C, H, N), crystal structure analyses, 15N and 29Si VACP/MAS solid-state NMR experiments) and in solution (except 10; 1H, 13C, and 29Si NMR experiments)The spirocyclic zwitterionic Lambda5Si-silicates 13, 15, and 16 with an (ammonio)methyl group and two bidentate meso-oxolane-3,4-diolato(2–) ligands bound to the silicon(IV) coordination center were synthesized for the first time. The already existent compound 14 was resynthesized in order to perform a crystal structure analysis. All compounds were characterized by elemental analyses (C, H, N), 29Si VACP/MAS solid-state NMR experiments, and solution NMR studies (1H, 13C, 15N, and 29Si NMR experiments), and compounds 14–16 were additionally studied by single-crystal X-ray diffraction.The already existent zwitterionic Lambda5Si-silicate 17 was synthesized by new methods, including a remarkable Si–C cleavage reaction with benzoin. To investigate the dynamic behavior of the known zwitterionic Lambda5Si-silicate 18 in solution, VT 1H NMR experiments in CD2Cl2 were performed in the temperature range –100 °C to 23 °C.The hexacoordinate silicon compounds 19–22 containing multidentate ligands derived from citric acid or (S)-malic acid were synthesized for the first time. The anionic Lambda6Si-silicates 19–22 were structurally characterized in the solid state by single-crystal X-ray diffraction and VACP/MAS NMR spectroscopy (13C, 15N, 29Si). Upon dissolution in water at 20 °C, spontaneous hydrolysis of the Lambda6Si-silicate anions was observed.
Diese Arbeit wurde durch Experimente zur Potential- und Stromverteilung in Quanten-Hall- Systemen motiviert, die in den letzten Jahren in der Abteilung von Klitzing am MPI für Festkörperforschung durchgeführt wurden und ergaben, dass elektrostatische Abschirmungseffekte in zweidimensionalen Elektronensystemen (2DES), die den ganzzahligen Quanten-Hall-Effekt (QHE) zeigen, sehr wichtig für das Verständnis der Stromverteilung innerhalb der Probe und der extremen Genauigkeit der gemessenen quantisierten Werte des Hall-Widerstands sind. Daraus ergab sich für die hier vorgelegte Arbeit das folgende Programm. Zunächst wird, nach einem einleitenden Kapitel, in Kapitel 2 der Formalismus vorgestellt, mit dem in den späteren Kapiteln Elektronendichten und elektrostatische Potentiale, die z.B. das 2DES auf eine Probe mit Streifengeometrie eingrenzen, selbstkonsistent berechnet werden. Diese Selbstkonsistenz besteht aus zwei Teilen. Erstens wird, bei vorgegebenem Potential, die Elektronendichte berechnet. Zweitens wird aus vorgegebener Ladungsverteilung, bestehend aus (positiven) Hintergrundladungen und der (im ersten Schritt berechneten) Elektronenladungsdichte, und geeigneten Randbedingungen (konstantes Potential auf metallischen Gates) durch Lösen der Poisson-Gleichung das elektrostatische Potential berechnet. Wenn wir im ersten Schritt, unter Berücksichtigung der Fermi-Dirac-Statistik, die Elektronendichte quantenmechanisch aus den Energieeigenfunktionen und -werten berechnen, erhalten wir die Hartree-Näherung, die die Dichte als nichtlokales Funktional des Potentials liefert. Wenn man die Ausdehnung der Wellenfunktionen auf der Längenskala, auf der sich das Potential typischerweise ändert, vernachlässigen kann, so vereinfacht sich die Hartree-Näherung zur Thomas- Fermi-Näherung, die einen lokalen Zusammenhang zwischen Elektronendichte und Potential beschreibt. Die meisten der konkreten Rechnungen wurden im Rahmen dieser selbstkonsistenten Thomas-Fermi-Poisson-Näherung durchgeführt. Im Kapitel 3 wird allgemein das Abschirmverhalten eines 2DES im hohen Magnetfeld untersucht. Wir betrachten die Antwort auf eine harmonische Potentialmodulation im unbegrenzten 2DES und in streifenförmig begrenzten Systemen mit zwei unterschiedlichen Arten von Randbedingungen. Bei tiefen Temperaturen und hohen Magnetfeldern finden wir extrem nichtlineare Abschirmung. Im unbegrenzten 2DES charakterisieren wir die Abschirmung, indem wir die gesamte Variation des selbstkonsistent berechneten Potentials als Funktion der Amplitude des aufgeprägten cosinus-Potentials berechnen. Bei festem Magnetfeld ergeben sich so Stufenfunktionen, deren Gestalt stark vom Füllfaktor der Landau-Niveaus im homogenen Zustand ohne aufgeprägtes Potential abhängt (siehe Abbildungen 3.2- 3.6). Vielleicht noch unerwartetere Kurven ergeben sich, wenn man bei festem Modulationspotential die Varianz des selbstkonsistenten Potentials gegen das Magnetfeld B aufträgt (Abb. 3.9). Die Resultate lassen sich aber leicht verstehen und (bei Temperatur T = 0) in einem einfachen Schema (Abb. 3.7) zusammenfassen. Als ordnendes Prinzip stellt sich heraus, dass sich stets Zustände einstellen, in denen die Elektronendichte möglichst wenig von der bei verschwindendem Magnetfeld abweicht. Wenn die Zyklotronenergie groß gegen die thermische Energie kBT ist, erfordert das, dass in den großen Bereichen, in denen die Dichte variiert, ein Landau-Niveau unmittelbar an dem, im Gleichgewicht konstanten, elektrochemischen Potential liegen muss (En, “pinning”). Man nennt diese Bereiche kompressibel. In den kompressiblen Bereichen können Elektronen leicht umverteilt werden, d.h. die Dichte ist leicht veränderbar und in diesen Bereichen gibt es extrem effektive Abschirmung. Existieren kompressible Bereiche mit unterschiedlichen Landau-Niveaus (En) am elektrochemischen Potential, z.B. bei großer Modulation oder weil die Dichte zum Probenrand hin abnimmt, so gibt es zwischen benachbarten kompressiblen Bereichen mit unterschiedlichen Landau-Quantenzahlen n “inkompressible” Bereiche, in denen zwischen zwei Landau-Niveaus liegt. Dort sind alle Landau-Niveaus unterhalb von besetzt, die oberhalb leer. Folglich ist dort der Füllfaktor ganzzahlig und die Dichte konstant. Das Wechselspiel zwischen kompressiblen und inkompressiblen Bereichen bestimmt das Abschirmverhalten. Randeffekte erweisen sich nur in solchen Magnetfeldintervallen als wichtig für die Abschirmung im Inneren einer streifenförmigen Probe, in denen (schon ohne aufgeprägte Modulation) in der Probenmitte ein neuer inkompressibler Streifen entsteht. Im Kapitel 4 wird die Rolle der inkompressiblen Streifen in einer idealisierten, streifenförmigen Hall-Probe untersucht. Mithilfe einer lokalen Version des Ohmschen Gesetzes berechnen wir bei vorgegebenen Gesamtstrom die Stromdichte und das nun ortsabhängige elektrochemische Potential, dessen Gradient die Stromdichte treibt. Für den lokalen Leitfähigkeitstensor nehmen wir ein für homogenes 2DES berechnetes Resultat und ersetzen den Füllfaktor jeweils durch den lokalen Wert. Dadurch ergibt sich, dass bei Existenz inkompressibler Streifen der gesamte Strom auf diese Streifen eingeschränkt ist, in denen die Komponenten des spezifischen Widerstands die Werte des freien, idealen 2DES haben, also verschwindenden longitudinalen und quantisierten Hall-Widerstand. Aus Hartree-Rechnungen zeigen wir, dass es inkompressible Streifen nur in Magnetfeldintervallen endlicher Breite (um ganzzahlige Füllfaktoren) gibt und dass in der Nähe von Füllfaktor 4 es nur inkompressible Streifen mit dem lokalen Füll-faktor \nu(x) = 4 gibt, aber nicht solche mit \nu(x) = 2, in Gegensatz zu dem Ergebnis der Thomas-Fermi-Poisson-Näherung, die hier nicht gültig ist. Um diese Unzulänglichkeit der Thomas-Fermi-Poisson-Näherung und Artefakte des strikt lokalen Modells zu beheben, führen wir die Rechnungen mit einem (auf der Skala des mittleren Elektronenabstands) gemittelten Leitfähigkeitstensors aus. Damit erhalten wir, im Rahmen einer Linear-Response-Rechnung, sehr schöne Übereinstimmung mit den Potentialmessungen, die diese Dissertation motivierten, einen kausalen Zusammenhang zwischen der Existenz inkompressibler Streifen und der Existenz von Plateaus im QHE, und ein Verständnis der extremen Genauigkeit, mit der die quantisierten Widerstandswerte reproduziert werden können, unabhängig von Probenmaterial und -geometrie. Im Kapitel 5 untersuchen wir das Zufallspotential, in dem sich die Elektronen bewegen. Wir gehen davon aus, dass sich hinter einer undotierten Schicht eine Ebene mit zufällig verteilten ionisierten Donatoren befindet, deren Coulomb-Potentiale sich zu dem Zufallspotential überlagern. Wir weisen darauf hin, dass sich die langreichweitigen Fluktuationen dieses Potentials anders verhalten als die kurzreichweitigen. Die kurzreichweitigen klingen mit dem Abstand der Donatorebene von der Ebene des 2DES exponentiell ab, werden aber (bei B = 0) nur schwach durch das 2DES abgeschirmt. Diese Fluktuationen haben wir durch die endlichen Leitfähigkeiten und die Stoßverbreiterung der Landau-Niveaus berücksichtigt. Die langreichweitigen Fluktuationen, andererseits, sind nur schwach von der Entfernung der Donatorebene abhängig, werden aber stark vom 2DES abgeschirmt. Diese sollte man bei der selbstkonsistenten Abschirmungsrechnung explizit berücksichtigen. Erste Versuche in dieser Richtung zeigen, dass sie die Quanten-Hall-Plateaus verbreitern, verschieben und stabilisieren können. Sie sollten besonders bei breiten Proben wichtig werden, bei denen sie zusätzliche inkompressible Streifen im Probeninneren verursachen können. Schließlich diskutieren wir in Kapitel 6 Abschirmungseffekte in einem Doppelschichtsystem aus zwei parallelen 2DES. Interessante neue Effekte treten auf, wenn die Schichten verschiedene Dichten haben. Das Auftreten inkompressibler Streifen in der einen Schicht kann dann drastische Auswirkungen auf die andere Schicht haben. Widerstandsmessungen in Abhängigkeit vom Magnetfeld, die kürzlich an solchen Systemen durchgeführt wurden, zeigen, dass am Rande eines QH-Plateaus Hysterese auftritt, d.h. dass die für ansteigendes Magnetfeld gemessene Kurve nicht mit der für abfallendes Magnetfeld gemessenen Kurve übereinstimmt, wenn dieser Magnetfeldbereich in ein QH-Plateau der anderen Schicht fällt. Wir entwickeln ein Modell und beschreiben Modellrechnungen, die dieses Phänomen plausibel machen.
Cloning and functional characterization of novel genes expressed preferentially in the human retina
(2005)
The human retina is a multi-layered neuronal tissue specialized for the reception and processing of visual information. The retina is composed of a great diversity of neuronal cell types including rod and cone photoreceptors, bipolar cells, ganglion cells, amacrine cells, horizontal cells and Müller glia. In response to light, a coordinated series of molecular events, the so-called phototransduction cascade, is triggered in photoreceptor cells and the signals from the photoreceptors are further processed by the bipolar and ganglion cells to the higher centers of the brain. The retina as highly complex system may be greatly susceptible to genetic defects which can lead to a wide range of disease phenotypes. Therefore, isolation and characterisation of the genes active in the human retina will facilitate our deeper understanding of retinal physiology and mechanisms underlying retinal degeneration and provide novel candidates for the retinal disease genes. To identify novel genes that are specifically or predominantly expressed in the human retina, a cDNA library enriched for retina specific transcripts was generated using suppression subtractive hybridization (SSH) technique. In total, 1113 clones were randomly isolated from the retina SSH cDNA library and partially sequenced. On the basis of BLASTN algorithm analysis these clones were classified into four categories including those with I) significant homology to known human genes (766/1113), II) significant homology to partial transcripts and hypothetical gene predictions (162/1113), III) no homology to known mRNAs (149/1113), and IV) vector sequences and clones derived from mitochondrial genes (36/1113). After correcting for redundancy, category I represented 234 known human genes and category II a total of 92unknown transcripts. Clones from category I, were selected for expression analysis by RT-PCR in a great number of human tissues. This resulted in the identification of 16 genes which were expressed exclusively in the retina, 13 which were highly expressed in the retina compared to other tissues, 12 genes which were specifically expressed in neuronal tissues and 48 ubiquitously expressed genes. Thus, our expression analysis resulted in the identification of 29 genes exclusively or abundantly transcribed in the human retina. Of those, retina specific genes L25,L33, L35, L37, L38 and L40 were selected for further analysis. To characterize the complete mRNA sequences of these transcripts a full-length human retina cDNA library was constructed. The analysis of the L25 gene revealed three splicing variants of the ABCC5 gene, consequently named ABCC5_SV1 (SV1), ABCC5_SV2 (SV2) and ABCC5_SV3 (SV3).These isoforms comprise the first five exons of ABCC5 and additional novel exons named 5a, 5b and 5c, generated by differential exon usage. The determined lengths of the three transcripts are 2039 bp, 1962 bp, and 1887 bp in size, respectively. RT-PCR, real-time PCR and Northern blot analysis of ABCC5 as well as the isoforms SV1, SV2 and SV3demonstrated high levels of expression for all transcripts in the retina compared to other tissues. Analysis of their nucleotide sequences revealed that inclusion of exon 5a in splicing variant SV1 produced a frame shift and premature termination codon (PTC). Our data show that this splice variant is the target of nonsense mediated mRNA decay (NMD). This was shown by inhibition of protein synthesis with antibiotics puromycin and anisomycin in human cell lines A-RPE 19 and Y79. Our analysis resulted in an increase of the PTC containing transcript and a decrease of the ABCC5 transcript. Conversely, the amount of both transcripts (SV1 and ABCC5) returned to pre-treatment levels after removal of the inhibitors. Together, our results suggest that alternative splicing of the ubiquitously expressed ABCC5 gene in addition to NMD is involved in retina-specific transcriptional regulation of the mRNA level of ABCC5. In contrast, additional experiments demonstrated that the levels of expression ofSV2 and SV3 isoforms do not appear to influence ABCC5 transcription. Several of the cloned genes were selected for additional genotyping of single nucleotide polymorphisms (SNPs) in order to construct their SNP maps which are going to be used for future association studies of complex disease AMD. Thus, identification of novel retinal genes and their functional characterization will further our elucidation of retinal physiology in general and in the diseased state in particular, by providing candidate retinal disease genes.
A large variety of sex determination systems have been described in fish. However, almost no information is available about sex determination in the classical fish models, the zebrafish Danio rerio and the pufferfish Takifugu rubripes. A DNA-binding protein gene called dmrt1bY (or DMY) has been recently described as an outstanding candidate for the primary sex-determining gene in the medaka fish Oryzias latipes. But this gene is not the universal master sex-determining gene in teleost fish, since dmrt1bY is not found in most other fishes. Hence, other fish models need to be examined including the platyfish Xiphophorus maculatus. Xiphophorus maculatus has three types of sex chromosomes (X, Y and W; females are XX, WX or WY; males are XY or YY). Its gonosomes are at an early stage of differentiation. The sex-determining locus on the sex chromosomes is flanked by two receptor tyrosine kinase genes, the Xmrk oncogene and its protooncogenic progenitor gene egfrb, which both delimit a region of about 0.6 centiMorgans. This situation should allow the positional cloning of the sex-determining gene (SD) of the platyfish. For this purpose, Bacterial Artificial Chromosome (BAC) contigs were assembled from a BAC library of XY males constructed in our laboratory, using the oncogene Xmrk, egfrb, as well as a Y-specific pseudogene called ps-criptY as starting points. The ps-criptY sequence was found to be closely linked to the SD gene, since no recombination was observed between SD and ps-criptY in more than 400 individuals tested. Two major BAC contigs for the X chromosome (about 2.5 Mb) and three major BAC contigs for the Y chromosome (about 3.5 Mb) were built up and analyzed by strategic sequencing. These are some of the largest contigs ever assembled for the sex chromosomes of a non-mammalian vertebrate species. The molecular analysis of the ps-criptY contig was the major objective of this work. The Y-specific ps-criptY contig has been extended over 1 Mb in this work with 58 identified molecular markers. Approximatively 700 kb of non-redundant sequences has been obtained from this contig by strategic sequencing. Numerous Y-linked markers from the contig including ps-criptY were also detected on the X chromosome. Nevertheless, major structural differences were observed between the X and Y chromosomes. Particularly, a large region, which is present at one copy on the X chromosome and contains several candidate genes, was found to be duplicated on the Y chromosome. Evidence for an inversion in the sex-determining region and for the Y-specific accumulation of a repeated sequence called XIR was also obtained. Such events might correspond to an initiation of differentiation between both types of gonosomes. Accumulation of transposable elements was also observed in the ps-criptY contig. A DNA transposable element, helitron, was isolated from the sex-determining region of X. maculatus. Three copies of helitron are located on the ps-criptY contig and one copy on the X-linked contig (helitron has roughly 15 copies per haploid genome). No in-frame stop codon, truncation or intron was found in these four copies, which present high nucleotide identities to each other. This suggests that helitron elements might be active or have been recently active in X. maculatus. A consensus open reading frame of helitron was also assembled from medaka (Oryzias latipes) genomic sequences. Two candidate genes from the ps-criptY contig are also located on the W chromosome in the X. maculatus Usumacinta strain (heterogamety). These markers show the relationship between the different types of gonosomes and allow to compare the male and female heterogameties in the platyfish. Several gene candidates were identified in the ps-criptY contig. However, some of them such as msh2, cript, igd and acr probably correspond to pseudogenes. Interestingly, a novel gene, called swimy, is exclusively expressed in spermatogonia of the adult testis. Swimy is a gene encoding a DNA-binding protein with several putative DNA-binding domains. The data suggest that swimy is a very promising candidate for the master SD gene. Another novel gene, which is called fredi and encodes a novel helix-turn-helix protein, is predominately expressed in the adult testis and currently under scrutiny. There is no doubt that the master SD gene of X. maculatus will be identified by positional cloning. Further molecular analysis of the contigs built in this work will shed new light on the molecular mechanism of sex determination and the evolution of sex chromosomes in fish.
Protein kinase B (PKB), a serine threonine kinase, is highly involved in the regulation of cellular proliferation and survival. To characterize PKB’s function in lymphocyte development and activation, transgenic (tg) mice that express a membrane targeted constitutively active form of PKBa (myr PKB) in T and B cells were analysed. Thymocytes from myr PKB tg mice showed enhanced proliferation after T cell receptor (TCR) engagement compared to wild type (wt) mice. Astonishingly, myr PKB tg thymocytes were capable to proliferate in response to PMA only and were also less sensitive to inhibition by the calcineurin inhibitors CsA or FK506, which indicates the proliferative response of myr PKB tg T cells is relatively independent of calcium mobilisation and calcineurin activity. In addition, when TCR signalling was inhibited by the MEKinase inhibitor PD98059 or the Srckinase inhibitor PP1 myr PKB tg thymocytes again were more resistant to inhibition. Western blot analysis revealed myr PKB enhances activation of the kinases Lck, Raf and Erk after TCR/CD3 stimulation. Thus, myr PKB renders proliferative responses of thymocytes more sensitive to TCR signals by positive regulation of the Lck-Raf-MEK-Erk signalling pathway. Studies on the cellular location of the tg protein showed myr PKB is located in membrane socalled “lipid rafts”. Furthermore, we found that after TCR/CD3 ligation endogenous cytoplasmic PKB moves into “lipid rafts”, which highlights PKB as a crucial mediator of TCR proximal signalling events. Analysing three different TCR tg model systems for positive and negative selection of immature precursors in the thymus, we found myr PKB promotes positive selection of CD4+ but not CD8+ T cells. This most likely results from PKB’s positive cross-talk on Lck-Raf-Erk signalling, which is known to influence thymocyte selection and CD4/CD8-lineage choice. Furthermore, myr PKB enhances phosphorylation of glycogen synthase kinase 3 (GSK3), a negative regulator of the transcription factor NFAT (nuclear factor of activated T cells) and T cell activation, and of the adapter protein c-Cbl. Concerning negative selection, myr PKB enhanced (OT1 mice), reduced (HY mice) or had no influence (OT2 mice) on negative selection. Thus, myr PKB’s effect on negative selection strongly depends on the model system analysed and this most likely results from differences in TCR affinity/avidity and TCR specificity for MHC. 106 Peripheral CD4+ T cells from myr PKB tg mice showed enhanced production of both Th1 and Th2 cytokines. Furthermore, after TCR/CD3 stimulation in the presence of TGF-b1, wt CD4+ T cells showed a drastic inhibition of proliferation, whereas myr PKB tg CD4+ T cells proliferated even better, i.e. they were resistant to the inhibitory TGF-b1 signals. Expression of myr PKB in B cells leads to reduced Ca2+ flux and proliferation after BCR stimulation, but activation of Lyn, SLP-65, c-Cbl and GSK-3 were enhanced. When we analysed B cell subsets in myr PKB tg mice, a decrease in immature and mature B cells became obvious, whereas cell numbers for marginal zone (MZ) B cells were normal. In aged myr PKB tg mice we detected a very strong reduction of pro/pre and immature B cell populations in the bone marrow, indicating PKB is very important for maintenance of B cell development. Furthermore, myr PKB also lead to a strong reduction of peritoneal B-1 cells. However, expression of NFATc1, which is required for B-1 cell development, was comparable between wt and myr PKB tg B-1 cells. To analyse the effect of myr PKB on immunoglobulin production, mice were immunized with thymus dependent (TD) and independent (TI) antigens. In both cases, B cell responses were strongly elevated in myr PKB tg mice. Finally, RT-PCR analyses of in vitro expanded B cells revealed increased Blimp-1 and Notch3 expression in myr PKB tg B cells, which might be primary candidates involved in their enhanced effector function. In summary, this study clearly shows an important cross-talk between PKB and various critical signalling molecules downstream of the TCR and BCR. Thereby active PKB modulates and regulates the thresholds for thymocyte selection and T cell activation as well as for B cell development and function.
Within the studies concerning metallo-silanols, halfsandwich-tungsten complexes have been silanol-functionalized at the cyclopentadienyl ligand. The stability and the condensation behavior have been investigated. Thus, it was shown that these complexes are stable enough for isolation but they are reactiv enough for time-effective condensation reactions with diverse chlorosilanes, chlorostannanes or metalhalogenides. These processes are characterized by an increased reactivity in contrast to metallo-silanols with a direct metal-bonded silanol group and proves that the separation of the silanol group has to be regarded as a successful manipulation. In addition, this modification allows a wide variation of the ligand sphere of the metal which was shown by H/Cl exchange, methylation, silylation or phosphine substitution. These changes evoke a small but significant influence on the silanol group. For example leads an introduced phosphine to an enhanced stability of the silanol function. A further separation of the silanol group from the metal by an additional alkylidene spacer leads to the complete lost of the stabilizing effect of the metal fragment and generates silanols which show a condensation behavior very similar to those of ordinary organosilanols.
The development of ethanol tolerance is due to changes in synaptic plasticity. Since the mechanisms mediating synaptic plasticity are probably defective in the mutant hangAE10, it was a goal of the present study to find out how HANG contributes to synaptic plasticity. In particular, it was important to clarify in which neuronal process HANG plays a role. Antibody stainings against HANG revealed that the protein is localized in all neuronal nuclei of larval and adult brains; the staining is absent in hangAE10, thus confirming that this P-element insertion stock is a protein null for HANG. Detailed analysis of the subnuclear distribution of HANG showed that HANG immunoreactivity is enriched at distinct spots in the nucleus in a speckled pattern; these speckles are found at the inside of the nuclear membrane and do not colocalize with chromatin nor with the nucleolus; thus, HANG is probably involved in the stabilization, processing or export of RNAs. As synaptic plasticity can be studied in single neurons at the larval neuromuscular junction, the morphology of the synaptic terminals of hangAE10 mutants was analyzed at muscle 6/7, segment A4. These studies revealed that hangAE10 mutants display a 40 % increase in bouton number and axonal branch length; in addition, some boutons have an abnormal hourglass-like shape, suggesting that they are arrested in a semi-separated state following the initiation of bouton division. The increase in bouton number of hang mutants is mainly due to an increase in numbers of type Ib boutons. The analysis of the distribution of several synaptic markers in hang mutants did not show abnormalities. The presynaptic expression of HANG in hang mutants rescues the increase in bouton number and axonal branch length, thus proving that the phenotypes seen in the P-element insertion hangAE10 are attributable to the lack of HANG rather than to effects of the P-element marker rosy or to a secondary hit on the same chromsome during mutagensis. This finding is further supported by the fact that postsynaptic expression of HANG does not rescue the abnormal NMJ morphology of hangAE10. Alterations in cAMP levels regulate the number of boutons; since hang mutants display an increase in bouton number, the questions was whether this morphological abnormality was due to defects in cAMP signalling. To test this hypothesis, hangAE10 NMJs were compared to those of the hypomorphic allele dnc1 that has a defective cAMP cascade. Some aspects of the NMJ phenotype (e.g. the increase in bouton number and the unaltered ratio of active zones per bouton area) are similar in hangAE10 and dnc1, other differ. Expression of a UAS-dnc transgene in hangAE10 mutants does not modify the phenotype. In summary, the results of this study indicate that nuclear protein HANG might be involved in isoform-specific splicing of genes required for synaptic plasticity at the NMJ.
Chemical neurotransmission is a complex process of central importance for nervous system function. It is thought to be mediated by the orchestration of hundreds of proteins for its successful execution. Several synaptic proteins have been shown to be relevant for neurotransmission and many of them are highly conserved during evolution- suggesting a universal mechanism for neurotransmission. This process has checkpoints at various places like, neurotransmitter uptake into the vesicles, relocation of the vesicles to the vicinity of calcium channels in order to facilitate Ca2+ induced release thereby modulating the fusion probability, formation of a fusion pore to release the neurotransmitter and finally reuptake of the vesicles by endocytosis. Each of these checkpoints has now become a special area of study and maintains its own importance for the understanding of the overall process. Ca2+ induced release occurs at specialized membrane structures at the synapse known as the active zones. These are highly ordered electron dense grids and are composed of several proteins which assist the synaptic vesicles in relocating in the vicinity of Ca2+ channels thereby increasing their fusion probability and then bringing about the vesicular fusion itself. All the protein modules needed for these processes are thought to be held in tight arrays at the active zones, and the functions of a few have been characterized so far at the vertebrate active zones. Our group is primarily interested in characterizing the molecular architecture of the Drosophila synapse. Due to its powerful genetics and well-established behavioural assays Drosophila is an excellent system to investigate neuronal functioning. Monoclonal antibodies (MABs) from a hybridoma library against Drosophila brain are routinely used to detect novel proteins in the brain in a reverse genetic approach. Upon identification of the protein its encoding genetic locus is characterized and a detailed investigation of its function is initiated. This approach has been particularly useful to detect synaptic proteins, which may go undetected in a forward genetic approach due to lack of an observable phenotype. Proteins like CSP, Synapsin and Sap47 have been identified and characterized using this approach so far. MAB nc82 has been one of the shortlisted antibodies from the same library and is widely used as a general neuropil marker due to the relative transparency of immunohistochemical whole mount staining obtained with this antibody. A careful observation of double stainings at the larval neuromuscular junctions with MAB nc82 and other pre and post-synaptic markers strongly suggested an active zone localization of the nc82 antigen. Synaptic architecture is well characterized in Drosophila at the ultrastructural level. However, molecular details for many synaptic components and especially for the active zone are almost entirely unknown. A possible localization at the active zone for the nc82 antigen served as the motivation to initiate its biochemical characterization and the identification of the encoding gene. In the present thesis it is shown by 2-D gel analysis and mass spectrometry that the nc82 antigen is a novel active zone protein encoded by a complex genetic locus on chromosome 2R. By RT-PCR exons from three open reading frames previously annotated as separate genes are demonstrated to give rise to a transcript of at least 5.5 kb. Northern blots produce a prominent signal of 11 kb and a weak signal of 2 kb. The protein encoded by the 5.5 kb transcript is highly conserved amongst insects and has at its N-terminus significant homology to the previously described vertebrate active zone protein ELKS/ERC/CAST. Bioinformatic analysis predicts coiled-coil domains spread all over the sequence and strongly suggest a function involved in organizing or maintaining the structure of the active zone. The large C-terminal region is highly conserved amongst the insects but has no clear homologues in veretebrates. For a functional analysis of this protein transgenic flies expressing RNAi constructs under the control of the Gal4 regulated enhancer UAS were kindly provided by the collaborating group of S.Sigrist (Gِttingen). A strong pan-neuronal knockdown of the nc82 antigen by transgenic RNAi expression leads to embryonic lethality. A relatively weaker RNAi expression results in behavioural deficits in adult flies including unstable flight and impaired walking behavior. Due to this peculiar phenotype as observed in the first knockdown studies the gene was named “bruchpilot” (brp) encoding the protein “Bruchpilot (BRP)” (German for crash pilot). A pan-neuronal as well as retina specific downregulation of this protein results in loss of ON and OFF transients in ERG recordings indicating dysfunctional synapses. Retina specific downregulation also shows severely impaired optomotor behaviour. Finally, at an ultrastructural level BRP downregulation seems to impair the formation of the characteristic T-shaped synaptic ribbons at the active zones without significantly altering the overall synaptic architecture (in collaboration with E.Asan). Vertebrate active zone protein Bassoon is known to be involved in attaching the synaptic ribbons to the active zones as an adapter between active zone proteins RIBEYE and ERC/CAST. A mutation in Bassoon results in a floating synaptic ribbon phenotype. No protein homologous to Bassoon has been observed in Drosophila. BRP downregulation also results in absence of attached synaptic ribbons at the active zones. This invites the speculation of an adapter like function for BRP in Drosophila. However, while Bassoon mutant mice are viable, BRP deficit in addition to the structural phenotype also results in severe behavioural and physiological anomalies and even stronger downregulation causes embryonic lethality. This therefore suggests an additional and even more important role for BRP in development and normal functioning of synapses in Drosophila and also in other insects. However, how BRP regulates synaptic transmission and which other proteins are involved in this BRP dependant pathway remains to be investigated. Such studies certainly will attract prominent attention in the future.
Wireless communication is nothing new. The first data transmissions based on electromagnetic waves have been successfully performed at the end of the 19th century. However, it took almost another century until the technology was ripe for mass market. The first mobile communication systems based on the transmission of digital data were introduced in the late 1980s. Within just a couple of years they have caused a revolution in the way people communicate. The number of cellular phones started to outnumber the fixed telephone lines in many countries and is still rising. New technologies in 3G systems, such as UMTS, allow higher data rates and support various kinds of multimedia services. Nevertheless, the end of the road in wireless communication is far from being reached. In the near future, the Internet and cellular phone systems are expected to be integrated to a new form of wireless system. Bandwidth requirements for a rich set of wireless services, e.g.\ video telephony, video streaming, online gaming, will be easily met. The transmission of voice data will just be another IP based service. On the other hand, building such a system is by far not an easy task. The problems in the development of the UMTS system showed the high complexity of wireless systems with support for bandwidth-hungry, IP-based services. But the technological challenges are just one difficulty. Telecommunication systems are planned on a world-wide basis, such that standard bodies, governments, institutions, hardware vendors, and service providers have to find agreements and compromises on a number of different topics. In this work, we provide the reader with a discussion of many of the topics involved in the planning of a Wireless LAN system that is capable of being integrated into the 4th generation mobile networks (4G) that is being discussed nowadays. Therefore, it has to be able to cope with interactive voice and video traffic while still offering high data rates for best effort traffic. Let us assume a scenario where a huge office complex is completely covered with Wireless LAN access points. Different antenna systems are applied in order to reduce the number of access points that are needed on the one hand, while optimizing the coverage on the other. No additional infrastructure is implemented. Our goal is to evaluate whether the Wireless LAN technology is capable of dealing with the various demands of such a scenario. First, each single access point has to be capable of supporting best-effort and Quality of Service (QoS) demanding applications simultaneously. The IT infrastructure in our scenario consists solely of Wireless LAN, such that it has to allow users surfing the Web, while others are involved in voice calls or video conferences. Then, there is the problem of overlapping cells. Users attached to one access point produce interference for others. However, the QoS support has to be maintained, which is not an easy task. Finally, there are nomadic users, which roam from one Wireless LAN cell to another even during a voice call. There are mechanisms in the standard that allow for mobility, but their capabilities for QoS support are yet to be studied. This shows the large number of unresolved issues when it comes to Wireless LAN in the context of 4G networks. In this work we want to tackle some of the problems.
In the experiments presented in this work, linear and non-linear femtosecond time-resolved spectrsocopy were applied to investigate the structure-function and functiondynamics relationship in biological and artificially designed systems. The experiments presented in this work utilize femtosecond time-resolved transient absorption and transient grating as well as picosecond time-resolved fluorescence spectroscopy to investigate the photophysics and photochemistry of biological photoreceptors and address the light-induced excited-state processes in a particular molecular device that serves as a - structurally - very simple light-harvesting antenna and potentially as a catalysis-switch for the production of hydrogen in solution. The combination of white-light probe transient absorption and coherent transient grating spectroscopies yields spectral information about the excited state absorption in concert with high quality, high signal-to-noise kinetic transients, which allow for precise fitting and therefore very accurate time-constants to be extracted from the data. The use of femtosecond time-resolved transient grating spectroscopy is relatively uncommon in addressing questions concerning the excited-state reaction pathways of complex (biological) systems, and therefore the experiments presented in this work constitute according to the literature the first studies applying this technique to a a metalloporphyrin and an artificial light-harvesting antenna.
Flagellar motility and chemotaxis are essential virulence traits required for the ability of Helicobacter pylori to colonize the gastric mucosa. The flagellar regulatory network and the complex chemotaxis system of H. pylori are fundamentally different from other bacteria, despite many similarities. In H. pylori expression of the flagella is controlled by a complex regulatory cascade involving the two-component system FlgR-HP244, the sigma factors 54 and 28 and the anti-sigma 28 factor FlgM. Thus far, the input signal for histidine kinase HP244, which activates the transcriptional regulator FlgR, which triggers sigma factor 54-dependent transcription of the flagellar class 2 genes, is not known. Based on a yeast two-hybrid screen a highly significant protein-protein interaction between the H. pylori protein HP137 and both the histidine kinase HP244 and the flagellar hook protein HP908 (FlgE´) has been reported recently (Rain et al., 2001). So far, no function could be assigned to HP137. Interestingly, the interaction between HP137 and histidine kinase HP244 was observed in the characteristic block N sequence motif of the C-terminal ATP-binding kinase domain. In this work a potential role of HP137 in a feedback regulatory mechanism controlling the activity of histidine kinase HP244 in the flagellar regulation of H. pylori was investigated. Although the substitution of the gene encoding HP137 by a kanamycin cassette resulted in non-motile bacteria, the failure to restore motility by the reintroduction of hp137 in cis into the mutant strain, and the observation that HP137 has no significant effect on the activity of histidine kinase HP244 in vitro indicated that HP137 is not directly involved in flagellar regulation. Therefore, it was demonstrated that HP137 does not participate in the regulation of flagellar gene expression, neither in H. pylori nor in the closely related bacterium C. jejuni. Chemotactic signal transduction in H. pylori differs from the enterobacterial paradigm in several respects. In addition to a CheY response regulator protein (CheY1) H. pylori contains a CheY-like receiver domain (CheY2) which is C-terminally fused to the histidine kinase CheA. Furthermore, the genome of H. pylori encodes three CheV proteins consisting of an N-terminal CheW-like domain and a C-terminal receiver domain, while there are no orthologues of the chemotaxis genes cheB, cheR, and cheZ. To obtain insight into the mechanism controlling the chemotactic response of H. pylori the phosphotransfer reactions between the purified two-component signalling modules were investigated in vitro. Using in vitro phosphorylation assays it was shown that both H. pylori histidine kinases CheAY2 and CheA´ lacking the CheY-like domain (CheY2) act as ATP-dependent autokinases. Similar to other CheA proteins CheA´ shows a kinetic of phosphorylation represented by an exponential time course, while the kinetics of phosphorylation of CheAY2 is characterized by a short exponential time course followed by the hydrolysis of CheAY2~P. Therefore, it was demonstrated that the presence of the CheY2-like receiver domain influences the stability of the phosphorylated P1 domain of the CheA part of the bifunctional protein. Furthermore, it was proven that both CheY1 and CheY2 are phosphorylated by CheAY2 and CheA´~P and that the three CheV proteins mediate the dephosphorylation of CheA´~P, although with a clearly reduced efficiency as compared to CheY1 and CheY2. Moreover, CheA´ is capable of donating its phospho group to the CheY1 protein from C. jejuni and to CheY protein from E. coli. Retrophosphorylation experiments indicated that CheY1~P is able to transfer the phosphate group back to the HK CheAY2 and the receiver domain present in the bifunctional CheAY2 protein acts as a phosphate sink fine tuning the activity of the freely diffusible CheY1 protein, which is thought to interact with the flagellar motor. Hence, in this work evidence of a complex phosphorelay in the chemotaxis system was obtained which has similarities to other systems with multiple CheY proteins. The role of the CheV proteins remain unclear at the moment, but they might be engaged in a further fine regulation of the phosphate flow in this complex chemotaxis system and the independent function of the two domains CheA´ and CheY2 is not sufficient for normal chemotactic signalling in vivo.
The biotransformation of 1,1,1,3,3-pentafluoropropane was investigated in rats and in in vitro systems. First, the metabolites were identified in vivo using GC/MS and 19F NMR analysis. The main metabolite was identified as trifluoroacetic acid, the minor metabolite as 3,3,3-trifluoropropionic acid and as a cleavage product, inorganic fluoride was found. As the in vitro system, liver microsomes from rat and human samples and rat liver homogenates were used. Trifluoroacetic acid and 3,3,3 trifluoropropionic acid were confirmed in vitro as metabolic intermediates, following biotransformation of 1,1,1,3,3-pentafluoropropane by the cytochrome P-450-system. Studies, designed for clarifying the cardiotoxicity of 1,1,1,3,3-pentafluoropropane were driven by the hypothesis that 3,3,3-trifluoropropionic acid is the toxic agent. This was based on the lethal toxicity, which was observed in previous in vivo experiments. In addition, the point of its structural similarity to toxic agents as for example monofluoroacetic acid or of possible metabolic intermediates like difluoroacrylic acid with known toxicity were considered to support this assumption. However, trifluoroacetic acid was neglected as the sought-after toxic agent because of its different toxic effects, known from literature. Investigations on the biotransformation of 3,3,3-trifluoropropionic acid were performed and resulted in no metabolic activity and in poor elimination of 3,3,3-trifluoropropionic acid in vivo. The histopathological effects on the heart, which were observed in the 90-day oral toxicity study of 1,1,1,3,3-pentafluoropropane in rats, namely mononuclear inflammatory cell infiltrations and degenerated myocardial fibers, were not observed after a 28 day repeated exposure of up to 10 mg/kg b.w. of 3,3,3-trifluoropropionic acid. However, a single high dose of 3,3,3-trifluoropropionic acid lead to severe toxicological effects. The difference in the observed toxic effects after a single and repeated administration may be due to adaptive mechanisms in rats. The toxicological effects included clinical signs like ataxia, coma and cramps. The conditions of the rats suggested possible inhibition of the energy supply to the organism. Furthermore, the interference of 3,3,3-trifluoropropionic acid in the functionality of the organism was investigated. Experiments were performed in vitro in rat liver and heart mitochondria to investigate effects on the mitochondrial ß-oxidation. However, the transformation of the substrate [U14C] palmitic acid in the ß oxidation pathway was not inhibited by 3,3,3-trifluoropropionic acid. In addition, no cytotoxicity of 3,3,3 trifluoropropionic acid was observed in the cell culture systems. The main effect after a single dose of 3,3,3-trifluoropropionic acid was seen in clinical pathology and metabonomic analysis. The decrease in blood glucose is considered to have the most far-reaching consequences for the toxicity of 3,3,3-trifluoropropionic acid. If considering this change as the primary effect after a single dose, secondary effects, for example, the above-mentioned clinical signs could be explained. In addition, the observed high level of ketone bodies might have been responsible for life-threatening possible ketoacidosis. In general, ketoacidosis occurs after an imbalance between glycolysis, lipolysis, TCA cycle activity and respiratory function. Based on the results, ß-oxidation of fatty acids was not affected, and due to the decrease in glucose levels and the high levels of acetyl CoA, glycolysis was considered not to be impaired. Increased amounts of acetyl CoA might be a result of insufficient activity of the TCA cycle. However, the inhibition of the TCA cycle can be based on the impairment of specific enzymes and/or on the involvement of messenger substrates like insulin. Supporting the first mentioned aspect are decreased levels of TCA cycle intermediates, like α-ketoglutarate or citrate, as seen in 1H-NMR spectra of urine. However, the second aspect would explain the drop in blood glucose with the impairment of glucose transporters or the impairment of the insulin balance. If a single dose of 3,3,3-trifluoropropionic acid had stimulated the insulin release, glycolysis would be activated, and high amounts of acetyl CoA would be produced. In case of impaired use by the TCA cycle, levels of ketone bodies would be increased. Experiments were designed to characterize the direct effect of 3,3,3-trifluoropropionic acid on rat insulinoma-derived INS-1 cells as possible increase in insulin release. Further investigations are necessary to answer in which step of the metabolic pathway 3,3,3-trifluoropropionic acid interferes or finally which specific enzyme is inhibited or activated by 3,3,3-trifluoropropionic acid, leading to the drop in blood glucose and finally in lethal toxicity.
Diese Arbeit enthält Untersuchungen von Magnetowiderstandseffekten in (Ga,Mn)As basierten ferromagnetischen Halbleiterdioden. Die Resultate wurden in den folgenden Artikeln veröffentlicht: [1] C. Rüster, T. Borzenko, C. Gould, G. Schmidt, L.W. Molenkamp, X. Liu, T.J.Wojtowicz, J.K. Furdyna, Z.G. Yu and M. Flatt´e, Very Large Magnetoresistance in Lateral Ferromagnetic (Ga,Mn)As Wires with Nanoconstrictions, Physical Review Letters 91, 216602 (2003). [2] C. Gould, C. Rüster, T. Jungwirth, E. Girgis, G.M. Schott, R. Giraud, K. Brunner, G. Schmidt and L.W. Molenkamp, Tunneling Anisotropic Magnetoresistance: A Spin-Valve-Like Tunnel Magnetoresistance Using a Single Magnetic Layer, Physical Review Letters 93, 117203 (2004). [3] C. Rüster, C. Gould, T. Jungwirth, J. Sinova, G.M. Schott, R. Giraud, K. Brunner, G. Schmidt and L.W. Molenkamp, Very Large Tunneling Anisotropic Magnetoresistance of a (Ga,Mn)As/GaAs/(Ga,Mn)As Stack, Physical Review Letters 94, 027203 (2005). [4] C. Rüster and C. Gould, T. Jungwirth, E. Girgis, G.M. Schott, R. Giraud, K. Brunner, G. Schmidt and L.W. Molenkamp, Tunneling anisotropic magnetoresistance: Creating a spin-valve-like signal using a single ferromagnetic semiconductor layer, Journal of Applied Physics 97, 10C506 (2005).