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This thesis was dedicated to the studies of the electronic and chemical properties of liquids and solutions using soft x-ray spectroscopies. The used photon-in-photon-out methods namely x-ray absorption spectroscopy (XAS), x-ray emission spectroscopy (XES), and resonant inelastic x-ray scattering (RIXS) appeared to be an excellent choice for these studies. In the framework of this thesis, the necessary experimental setup for using the above mentioned experimental techniques on liquids was developed. Hereby, a new flow-through liquid cell was introduced which simplifies the studies of liquids and solutions. The cell design is very flexible and thus can be modified for gases and liquid/solid interfaces. With this cell it is possible to study the samples under well-controlled conditions (temperature and flow rate). The novel flow-through liquid cell is part of the new SALSA synchrotron endstation including an electron analyzer and a novel high-resolution, high-transmission soft x-ray spectrometer. The latter makes it possible to measure two-dimensional RIXS maps in a very short time, which include the full excitation and emission information in one plot. Making use of the new instrumentation, a variety of different liquids and solutions were investigated. As first system, aqueous solutions of sodium hydroxide (NaOH) and sodium deuteroxide (NaOD) were investigated. In the XAS as well as in the XES spectra a pronounced concentration dependence was found. At non-resonant energies, the spectra are dominated by the solvent and thus look similar to water. Making use of the pre-pre-edge in the absorption spectra which can exclusively be attributed to OH- / OD- it was possible to extract the resonant emission spectra of the ions which show an indication for proton dynamics during the core-hole lifetime. For the solid state NaOH XES spectra it was possible to reveal a high energetic shoulder and a low energetic shoulder at the high energy emission feature. These shoulders can be assigned to self-dissociation processes where OH- forms O2- ions and H2O. The study of NaOH was also of interest for the studies of the amino acids, which were in the focus of the next part, since the pH-values of the respective solutions were controlled by NaOH. In the next part of this thesis, amino acid solutions were investigated. Amino acids are the building blocks of peptides and proteins and thus important for life science. The investigated representatives were glycine, the simplest amino acid, and lysine, an amino acid with two amine groups. Both amino acids react on pH-value changes at the amine group where the local environment at the nitrogen atom changes (NH2 ↔ NH3+). A strong change of the spectra induced by this protonation/deprotonation could be found. Furthermore, for low pH-values (protonated amine groups) the amine groups are influenced by strong proton dynamics. First DFT calculations confirm the dissociation model of the amino acids. Qualitatively the high energy peak in the N K XES spectra can be attributed to the deprotonated amine group and the low energy area for the protonated amine group. Besides amino acids, alcohols and acids are important in biological processes. Therefore, the smallest alcohol (methanol) and the smallest carboxylic acid (acetic acid) were under investigation. For the liquid methanol XES spectra a very good agreement with DFT calculations of gas phase methanol could be found. This observation suggests that the influence of the environment (hydrogen bonding) on the spectra is small. The achieved spectra are in good agreement with DFT calculations found in literature. It was possible to selectively excite the two non-equivalent oxygen atoms in acetic acid and to reveal the carboxyl specific C K XES. The carbon XAS spectra showed strong differences compared to gas phase measurements which might be a hint for the influence of the hydrogen bond network. The investigation of the electronic and chemical properties of liquids and solutions is a very young field of research and the results presented in this thesis show that it is a very interesting topic. The presented results can be seen as the fundamental frame work for all following studies. With the understanding of basic, i.e., simple, systems as shown in this work it will be possible to understand complex biological systems in their native environment, e.g., peptides and proteins, which are the building blocks of life.
Mycobacterium tuberculosis is the causative agent of tuberculosis and responsible for more than eight million new infections and about two million deaths each year. Novel chemotherapeutics are urgently needed to treat the emerging threat of multi drug resistant and extensively drug resistant strains. Cell wall biosynthesis is a widely used target for chemotherapeutic intervention in bacterial infections. In mycobacteria, the cell wall is comprised of mycolic acids, very long chain fatty acids that provide protection and allow the bacteria to persist in the human macrophage. The type II fatty acid biosynthesis pathway in Mycobacterium tuberculosis synthesizes fatty acids with a length of up to 56 carbon atoms that are the precursors of the critical mycobacterial cell wall components mycolic acids. KasA, the mycobacterial ß-ketoacyl synthase and InhA, the mycobacterial enoyl reductase, are essential enzymes in the fatty acid biosynthesis pathway and validated drug targets. In this work, KasA was expressed in Mycobacterium smegmatis, purified and co-crystallized in complex with the natural thiolactone antibiotic thiolactomycin (TLM). High-resolution crystal structures of KasA and the C171Q KasA variant, which mimics the acyl enzyme intermediate of the enzyme, were solved in absence and presence of bound TLM. The crystal structures reveal how the inhibitor is coordinated by the enzyme and thus specifically pinpoint towards possible modifications to increase the affinity of the compound and develop potent new drugs against tuberculosis. Comparisons between the TLM bound crystal structures explain the preferential binding of TLM to the acylated form of KasA. Furthermore, long polyethylene glycol molecules are bound to KasA that mimic a fatty acid substrate of approximately 40 carbon atoms length. These structures thus provide the first insights into the molecular mechanism of substrate recognition and reveal how a wax-like substance can be accommodated in a cytosolic environment. InhA was purified and co-crystallized in complex with the slow, tight binding inhibitor 2-(o-tolyloxy)-5-hexylphenol (PT70). Two crystal structures of the ternary InhA-NAD+-PT70 were solved and reveal how the inhibitor is bound to the substrate binding pocket. Both structures display an ordered substrate binding loop and corroborate the hypothesis that slow onset inhibition is coupled to loop ordering. Upon loop ordering, the active site entrance is more restricted and the inhibitor is kept inside more tightly. These studies provide additional information on the mechanistic imperatives for slow onset inhibition of enoyl ACP reductases.
This thesis analyzes the 2001-2006 labor market reforms in Germany. The aim of this work is twofold. First, an overview of the most important reform measures and the intended effects is given. Second, two specific and very fundamental amendments, namely the merging of unemployment assistance and social benefits, as well as changes in the duration of unemployment insurance benefits, are analyzed in detail to evaluate their effects on individuals and the entire economy. Using a matching model with optimal search intensity and Semi-Markov methods, the effects of these two amendments on the duration of unemployment, optimal search intensity and unemployment are analyzed.
Studies on platelet cytoskeletal dynamics and receptor regulation in genetically modified mice
(2009)
Platelets are produced by bone marrow megakaryocytes in a process involving actin dynamics. Actin-depolymerizing factor (ADF) and cofilin are actin-binding proteins that act as key regulators in actin turnover by promoting filament severing and depolymerization. The overall significance of ADF/cofilin function and actin turnover in platelet formation is presently unclear. In the first part of this thesis, platelet formation and function were studied in mice constitutively lacking ADF and/or mice with a conditional deficiency (Cre/loxP) in n-cofilin. To delete cofilin exclusively in megakaryocytes and platelets, cofilinfl/fl mice were crossed with PF4 (platelet factor 4)-Cre mice. While a single-deficiency in ADF or n-cofilin resulted in no or only a minor platelet formation defect, respectively, a double-deficiency in ADF and n-cofilin led to an almost complete loss of platelets. Bone marrow megakaryocytes of ADF/n-cofilin-deficient mice showed defective platelet zone formation. Interestingly, in vitro and ex vivo megakaryocyte differentiation revealed reduced proplatelet formation and absence of platelet-forming swellings. These data establish that ADF and n-cofilin have redundant but essential roles in the terminal step of platelet formation in vitro and in vivo. In the second part of the thesis, mechanisms underlying cellular regulation of the major platelet collagen receptor, glycoprotein VI (GPVI), were studied. GPVI mediates platelet activation on exposed subendothelial collagens at sites of vascular injury, and thereby contributes to normal hemostasis but also to occlusion of diseased vessels in the setting of myocardial infarction or stroke. Thus, GPVI is an attractive target for anti-thrombotic therapy, particularly because previous studies have shown that anti-GPVI antibodies induce irreversible down-regulation of the receptor in circulating platelets by internalization and ectodomain shedding. Metalloproteinases of the ADAM (a disintegrin and metalloproteinase domain) family are suspected to mediate this ectodomain shedding, but in vivo evidence for this is lacking. To study the mechanism of GPVI regulation in vivo, two mouse lines, Gp6 knock-out and Adam10fl/fl, PF4-Cre mice, were generated and in addition low TACE (TNFalpha converting enzyme) mice were analyzed. It was shown that GPVI can be cleaved in vitro by ADAM10 or TACE depending on the shedding-inducing signaling pathway. Moreover, GPVI was down-regulated in vivo upon antibody injection in ADAM10-deficient and low TACE mice suggesting that either both or an additional metalloproteinase is involved in GPVI regulation in vivo.