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Numerical simulations and an analytic approach based on transmission line theory are used to design splitters for nano-plasmonic signal processing that allow to arbitrarily adjust the ratio of transmission from an input into two different output arms. By adjusting the geometrical parameters of the structure, either a high bandwidth or a sharp transmission resonance is obtained. Switching between the two arms can be achieved by modulating the effective refractive index of the waveguide. Employing the instantaneous Kerr effect, switching rates in the THz regime are potentially feasible. The suggested devices are of interest for future applications in nanoplasmonic information processing.
The scope of this work is to develop a novel single-molecule imaging technique by combining atomic force microscopy (AFM) and optical fluorescence microscopy. The technique is used for characterizing the structural properties of multi-protein complexes. The high-resolution fluorescence microscopy and AFM are combined (FIONA-AFM) to allow for the identification of individual proteins in such complexes. This is achieved by labeling single proteins with fluorescent dyes and determining the positions of these fluorophores with high precision in an optical image. The same area of the sample is subsequently scanned by AFM. Finally, the two images are aligned and the positions of the fluorophores are displayed on top of the topographical data. Using quantum dots as fiducial markers in addition to fluorescently labeled proteins, fluorescence and AFM information can be aligned with an accuracy better than 10 nm, which is sufficient to identify single fluorescently labeled proteins in most multi-protein complexes. The limitations of localization precision and accuracy in fluorescence and AFM images are investigated, including their effects on the overall registration accuracy of FIONA-AFM hybrid images. This combination of the two complementary techniques opens a wide spectrum of possible applications to the study of protein interactions, because AFM can yield high resolution (5–10 nm) information about the conformational properties of multi-protein complexes while the fluorescence can indicate spatial relationships of the proteins within the complexes. Additionally, computer simulations are performed in order to validate the accuracy of the registration algorithm.
In this thesis, soft x-ray absorption spectroscopy (XAS) and resonant inelastic x-ray scattering (RIXS) studies of the electronic structure of selected organic molecules and liquids were carried out. The first part focuses on the used experimental techniques and the development of the instrumentation necessary for these studies, namely a soft x-ray spectrometer, and a temperature-controlled flow-through liquid cell. The former was optimized by a special analytical ray tracing method developed exclusively for this purpose. Due to its high transmission, the spectrometer facilitates a novel experimental approach of recording comprehensive 'RIXS maps', which are 2-dimensional plots of x-ray scattering intensities as a function of both, excitation and emission photon energy. The liquid cell extends these possibilities to the study of liquids, especially the interaction of molecules in liquids and their chemical reactions under well-controlled conditions. Organic molecules have attracted considerable attention in the last decade. The intense research activities related to these materials have two main motivations: on the one hand, organic molecules have a technological application as building blocks of organic semiconductors, while, on the other hand, organic molecules are the functional elements in biological systems. In order to cost-effectively produce optimized organic electronic devices, a fundamental knowledge of the electronic properties of the organic molecules interface is necessary. Therefore, many studies of the electronic structure of potential candidates for organic electronics exist. Two of these candidates, namely C60 and well-ordered multilayers PTCDA on a Ag(111) surface are investigated in this thesis. For the study of C60 molecules, a comprehensive 'RIXS map' was recorded and analyzed. The RIXS map taken in only 25 minutes allows a quantitative analysis of energy losses, yielding for example the HOMO-LUMO distance. It also identifies a core-excitonic state and facilitates a quantitative comparison of its binding energy with that of valence excitons in C60. Furthermore, decay channel-selective partial fluorescence yield XAS spectra can be extracted from the RIXS map, yielding information on the population of the core-excitonic state as a function of excitation energy. As a second model system of organic molecules relevant for organic electronics, PTCDA was chosen. The complex electronic structure of the occupied states of a highly ordered, flat-lying PTCDA multilayer on a Ag(111) surface was investigated by symmetry-resolved resonant x-ray emission spectroscopy. The rapidly occurring beam damage effects were characterized on the basis of irradiation-time dependent series of C and O x-ray emission spectra. Upon varying the excitation energy and emission geometry, atom- and symmetry-specific carbon K emission spectra with negligible beam damage effects were obtained that allow to distinguish between electronic states with sigma and pi symmetry. A density functional theory calculation of the PTCDA molecule reproduces the energy positions of the most prominent emission features remarkably well. In addition, the energy positions of the sigma and pi emissions agree well with the calculated energies of the respective orbitals. In order to shed light on the second aspect of organic molecules, namely their role in biological systems, first a detailed investigation of the electronic structure and proton dynamics of liquid water as the medium of most chemical and biochemical reactions was carried out. Therefore, a comprehensive oxygen K RIXS map of liquid water was recorded and analyzed in great detail. A temperature-dependent comparison with XAS and RIXS data of D2O, NaOH, and NaOD leads to the conclusion, that ultra-fast dissociation takes place in liquid water on the timescale of the oxygen 1s core hole lifetime, resulting in a characteristic spectral contribution in the RIXS spectra. The dissociation is promoted by intact hydrogen bonds with neighboring molecules. In consequence, the rate of dissociation directly depends on the initial hydrogen bond configuration. In the next step towards biologically relevant systems, the nitrogen K edges of the amino acids glycine and histidine were investigated in powderous form as well as in their native environment, namely in aqueous solution. X-ray absorption and emission spectra of the aqueous solutions were analyzed at pH-values of 6 and for glycine also at pH 12 and compared to the spectra of powders. A pH-value of 12 causes deprotonation of the amino group, leading to significant changes in the nitrogen spectra as compared to pH 6. The results from these four examples demonstrate that a wealth of novel information can be obtained by using the new experimental tools developed in this thesis, namely a highly sensitive x-ray spectrometer and a flow-through liquid cell.
Nuclear magnetic resonance has numerous applications for in vivo diagnostics. However, methods requiring homogeneous magnetic fields, particularly magnetic resonance spectroscopy (MRS) techniques, have limited applicability in regions near or on anatomical boundaries that cause strong inhomogeneities. In cases where the shim system can not or just partly correct for these inhomogeneities, methods based on intermolecular multiple quantum coherence (iMQC) detection can provide an alternative solution for in vivo MRS. This dissertation presented the development, validation and application potential of a novel MRS pulse sequence detecting intermolecular zero-quantum coherences (iZQC) with special emphasis on in vivo experiments. In addition, the detection limit and spectral behaviour of iZQC-MRS under modelled realistic conditions were systematically approached for the first time. Based on the original sequence used to detect two dimensional (2D) iZQC-spectra, dubbed HOMOGENIZED, methodological development led to increased sensitivity and water suppression, and decreased T2-relaxation effects through the application of a frequency selective 90° RF-pulse in place of a non selective beta-pulse. Best water suppression was achieved by placing a pair of selective refocusing units immediately prior to the acquisition window. The same placement was found to be optimal also for single voxel localization units based on slice selective spin echo refocusing. By voxel selection before the iZQC-MRS sequence, the chemical shift artefact could be avoided. However, this led to significant residual signal from outside the voxel. Analytical derivations of signal evolution for several sequences presented in this dissertation provide useful additions to the iZQC MRS theory. In vivo applications of the developed sequence provided high quality spectra in the central nervous system of the rat, the mouse brain and in subcutaneous xenograft tumor grown on the thigh of the mouse. In all these 2D spectra, the limiting factor of the resolution in the indirect dimension was the digital sampling rate, rather than inhomogeneous line broadening. Nevertheless, linewidths of the cross-peaks were similar or narrower than along the direct axis, where the sampling rate was about ten times higher. The first MR spectroscopic investigation of the rat spinal cord at 17.6 T was performed. Through its insensitivity to macroscopic field inhomogeneities, the localized iZQC method allowed for the selection of larger voxels than conventional methods and still provided the same spectral resolution. This property was used also in tumor tissue to propel the relative signal to noise (SNR) efficiency of the iZQC spectroscopy for the first time above the SNR efficiency of a conventional sequence. Future applications for fast metabolite count in large inhomogeneous organs, like a tumor, are thinkable. Extensive simulations and phantom experiments assessed the limit of iZQC cross-peak detection in presence of local field distortions. The order of maximum volume ratio between dipole source and voxel was found to be between 0.1 % and 1 %. It is an essential conclusion of this study that the dominant effect of microscopic to mesoscopic inhomogeneities on iZQC spectra under general in vivo conditions, like for voxels greater than (1 mm)³ and metabolite concentrations in the millimolar range, is a cross-peak intensity reduction and not line broadening. The iZQC method provided resolution enhancement in comparison to conventional MRS even in the presence of clustered paramagnetic microparticles. However, the vision of iZQC spectroscopy in green leafs or the lung epithelium has to be, unfortunately, abandoned, because cross-peaks can be observed until the volume of the separating medium is much larger than the volume of local dipole sources. Intermolecular zero-quantum coherence spectroscopy remains an exciting field in NMR research on living organisms. It provides access to the monitoring of relative metabolite concentration changes in the presence of microscopic iron particles, which raises realistic hopes for new applications in studies using stained stem cells.
Contents List of Publications 1 Introduction 2 Basic concepts and instrumentation 2.1 Mathematical description of femtosecond laser pulses 2.2 Optical quantities and measurements 2.2.1 Intensity 2.2.2 Absorbance and Beer-Lambert law 2.3 Laser system 2.4 General software framework for scientific data acquisition and simulation 2.4.1 Core components 2.4.2 Program for executing a single measurement sequence 2.4.3 Scan program 2.4.4 Evolutionary algorithm optimization program 2.4.5 Applications of the software framework 2.5 Summary 3 Generation of ultrabroadband femtosecond pulses in the visible 3.1 Nonlinear optics 3.1.1 Nonlinear polarization and frequency conversion 3.1.2 Phase matching 3.2 Optical parametric amplification 3.3 Noncollinear optical parametric amplifier 3.4 Considerations and experimental design of NOPA 3.4.1 Options for broadening the NOPA bandwidth 3.4.2 Experimental setup 3.5 NOPA pulse characterization 3.5.1 Second harmonic generation frequency-resolved optical gating 3.5.2 Transient grating frequency-resolved optical gating 3.6 Compression and shaping methods for NOPA pulses 3.6.1 Grating compressor 3.6.2 Prism compressor 3.6.3 Chirped mirrors 3.6.4 Detuned zero dispersion compressor 3.6.5 Deformable mirror pulse shaper 3.6.6 Liquid crystal pulse shaper 3.7 Liquid crystal pulse shaper 3.7.1 Femtosecond pulse shapers 3.7.2 Experimental design and parameters 3.7.3 Optical setup of the LC pulse shaper 3.7.4 Calibrations of the pulse shaper 3.8 Adaptive pulse compression 3.8.1 Closed loop pulse compression 3.8.2 Open loop pulse compression 3.9 Conclusions 4 Coherent optical two-dimensional spectroscopy 4.1 Introduction 4.2 Theory of third order nonlinear optical spectroscopies 4.2.1 Response function, electric fields, and signal field 4.2.2 Signal detection with spectral interferometry 4.2.3 Evaluation of two-dimensional spectra and phasing 4.2.4 Selection and classification of terms in induced nonlinear polarization 4.2.5 Oscillatory character of measured signal 4.3 Previous experimental implementations 4.4 Inherently phase-stable setup using conventional optics only 4.4.1 Manipulation of pulse pairs as a basis for stability 4.4.2 Experimental setup 4.4.3 Measurement procedure 4.4.4 Data evaluation 4.5 First experimental results 4.5.1 Demonstration of phase stability 4.5.2 2D spectrum of Nile Blue at room temperature 4.6 Summary and outlook 5 Product accumulation for ultrasensitive femtochemistry 5.1 The problem of sensitivity in femtochemistry 5.2 Accumulation for increased sensitivity 5.2.1 Comparison of conventional and accumulative sensitivity 5.2.2 Schematics and illustrative example 5.3 Experimental setup 5.4 Calibration and modeling of accumulation 5.5 Experiments on indocyanine green 5.5.1 Calibration of the setup 5.5.2 Chirped pulse excitation 5.5.3 Adaptive pulse shaping 5.6 Conclusions 6 Ultrafast photoconversion of the green fluorescent protein 6.1 Green fluorescent protein 6.2 Experimental setup for photoconversion of GFP 6.3 Calibration of the setup for GFP 6.3.1 Model for concentration dynamics of involved GFP species 6.3.2 Estimate of sensitivity 6.4 Excitation power study 6.5 Time-resolved two-color experiment 6.6 Time-delayed unshaped 400 nm – shaped 800 nm pulse excitation 6.6.1 Inducing photoconversion with chirped pulses 6.6.2 Photoconversion using third order phase pulses 6.7 Conclusions 7 Applications of the accumulative method to chiral systems 7.1 Introduction 7.2 Chiral asymmetric photochemistry 7.2.1 Continuous-wave circularly polarized light 7.2.2 Controlled asymmetric photochemistry using femtosecond laser pulses 7.3 Sensitive and fast polarimeter 7.3.1 Polarimeter setup 7.3.2 Detected signal I(t) 7.3.3 Angular amplification 7.3.4 Performance of the polarimeter 7.4 Molecular systems and mechanisms for enantioselective quantum control 7.4.1 Binaphthalene derivatives 7.4.2 Photochemical helicene formation 7.4.3 Spiropyran/merocyanine chiroptical molecular switches 7.5 Summary 8 Summary Zusammenfassung Bibliography Acknowledgements
The approach of using the combination of Ultraviolet (UPS) and Inverse Photoemission (IPS) to determine the transport levels in thin films of organic semiconductors is the scope of this work. For this matter all influences on the peak position and width in Photoelectron Spectroscopy are discussed with a special focus on organic semiconductors. Many of these influences are shown with experimental results of the investigation of diindenoperylene on Ag(111). These findings are applied to inorganic semiconductors silicon in order to establish the use of UPS and IPS on a well-understood system. Finally, the method is used to determine the transport level of several organic semiconductors (PTCDA, Alq3, CuPc, DIP, PBI-H4) and the corresponding exciton binding energies are calculated by comparison to optical absorption data.
Semiconductor Quantum Dots (QDs) have been attracting immense interest over the last decade from both basic and application-orientated research because of their envisioned use as fundamental building blocks in non-classical device architectures. Their presumable ease of integration into existing semiconductor technology has bought them the reputation of being cost-efficiently scalable and renders them a place among the top candidates in a wide range of proposed quantum logic and quantum information processing schemes. These include the highly acclaimed use of QD as triggered sources of single pairs of entangled photons, which is a key ingredient of most of the intensivly investigated optical quantum cryptography operations. A big obstacle towards these goals are the pronounced asymmetries that are intrinsically present in all currently availabe semiconductor QD systems. They are a natural by-product that stems from the employed self-assembled growth methods and manifest in various forms such as shape-asymmetry, inhomogeneous strain distribution within the QD and concomittant piezo-elecric fields. These asymmetries in return give rise to distinct anisotropies in the optical properties of QDs, which in fact render their optical response classic. For device oriented research these anisotropies are therefore typically considered unwanted and actively researched to be controlled. They are, however, interesting from a fundamental point of view, as anisotropic QDs basically provide a testbed system for fundamental atom-like quantum physics with non-centrosymmetric potentials. As shall be shown in the current work, this gives rise to novel and interesting physics in its own right. Employing photoluminescence spectroscopy (PL) we investigate the optical anisotropy of the radiative recombination of excitons confined to CdSe/ZnSe QDs. This is done by angle-dependent polarization-resolved PL. We demonstrate experimentally that the electron-hole exchange interaction in asymmetric QDs gives rise to an effective conversion of the optical polarization from linear to circular and vice versa. The experiment is succesfully modeled in the frame of an exciton pseudospin-formalism that is based on the exchange induced finestructure splitting of the radiative excitonic states and unambiguously proves that the observed polarization conversion is the continuous-wave equivalent to quantum beats between the exchange split states in the time domain. These results indicate that QDs may offer extended functionality beyond non-classical light sources in highly integrated all-optical device schemes, such as polarization converters or modulators. In a further extension we apply the exciton pseudospin-formalism to optical alignment studies and demonstrate how these can be used to directly measure the otherwise hidden symmetry distribution over an ensemble of QDs. This kind of measurement may be used on future optical studies in order to link optical data more directly to structural investigations, as it yields valuable information on capped QDs that cannot be looked at directly by topological methods. In the last part of this work we study the influence of an in-plane magnetic field on the optical anisotropy. We find that the optical axis of the linear polarization component of the photoluminescence signal either rotates in the opposite direction to that of the magnetic field or remains fixed to a given crystalline direction. A qualitative theoretical analysis based on the exciton pseudospin Hamiltonian unambiguously demonstrates that these effects are induced by isotropic and anisotropic contributions to the heavy-hole Zeeman term, respectively. The latter is shown to be compensated by a built-in uniaxial anisotropy in a magnetic field B=0.4 T, resulting in an optical response that would be expected for highly symmetric QDs. For a comprehensive quantitative analysis the full heavy-hole exciton k.p-Hamiltonian is numerically calculated and the resulting optical polarization is modeled. The model is able to quantitatively describe all experimental results using a single set of parameters. From this model it is explicitly seen that a optical response characteristic for high symmetry QDs may be obtained from an ensemble of asymmetric QDs without a crossing of the zero-field bright exciton states, which was required for application of QDs in non-classical light sources. It is clearly demonstrated that any scheme using in-plane magnetic fields to symmetrize the optical response has to take into account at least four optically active states instead of the two observed in the absence of magnetic fields. These findings may explain some of the major disagreement on recent entanglement studies in asymmetric QDs, as models that do not take the above result into account cannot be a priori expected to provide reliable results on excitonic Bell states.
Investigation of Intermolecular Interaction in Organic Thin Films by means of NEXAFS Spectroscopy
(2009)
The present work reports on the electron–vibron coupling in large organic molecules and particularly on the intermolecular interaction in molecular condensates. The optical and electrical properties of these organic systems are in the focus of attention due to their crucial importance for the development of (hybrid) organic electronic devices. In particular, the charge transport mechanism and hence the interaction between condensed molecules is a matter of debate [1–4]. In order to shed light on this interaction, the spectroscopic signatures of isolated molecules in the gas phase and their condensed counterparts have been studied. The applied technique, near–edge x–ray absorption fine structure (NEXAFS) spectroscopy, is a local probe with high chemical selectivity, well suited for the investigation of the electronic structure of molecular valence levels [5]. In the experimental part, the experimental set–up developed in this work is described with special attention to the characteristic issues of gas phase measurements, energy calibration and the subsequent data evaluation. The high quality gas phase and solid state NEXAFS spectra are analysed with respect to energy positions, shape and intensity of the sharp pi*–resonances characteristic for these aromatic molecules. Where applicable, a detailed Franck–Condon (FC) analysis of the vibronic fine structure has been performed, yielding additional information on the changes that occur upon solid state formation. Together with former results on vibrational features in large organic molecules, this information has been used to investigate the correlation of vibrational energies in the ground and electronically excited state. We find a relatively good agreement with other empirical studies on vibronic structures in photoelectron spectroscopy (PES) spectra of small molecules [6]. The molecular compounds investigated are in general believed to interact via weak van–der–Waals forces only. The present results however reveal distinct differences between the spectra of the gas and solid phase that can not be explained within the context of a mere interaction by dispersive forces. In detail, differential red–shifts of 0.1 to 0.3eV of transitions assigned to the aromatic system have been observed in the C–K spectra of benzene–tetracarboxylic acid dianhydride (BTCDA), 1,4,5,8–naphthalene–tetracarboxylic acid dianhydride (NTCDA), and 3,4,9,10–perylene–tetracarboxylic acid dianhydride (PTCDA) upon solid state formation. From BTCDA to PTCDA the shift increases, indicating an improving intermolecular interaction with molecular size or a closer molecular packing. In contrast, all transitions assigned to the anhydride carbon atom (C1) do not show any shift. For the O–K spectra, small changes in relative intensity have been observed for BTCDA and NTCDA. In case of PTCDA, a blue–shift of up to 0.2eV is evident for the OB 1sLEMO+1 transition. Theoretical models for the intermolecular interaction have been proposed in this work, based on a change of molecular geometry and interaction of adjacent molecules in the ground and excited state, respectively. While an interaction of adjacent molecular orbitals may explain the experimental findings for one particular molecule, this model falls short for a comprehensive explanation of all three dianhydrides. For an interaction in the excited state, the excitonic coupling with the neighbours attached at an angle, quantum chemical calculations yield no significant change in peak positions for NTCDA. Unfortunately, results for the stacked neighbours as well as the larger compound PTCDA are still lacking. For tris (8–quinolinol) aluminum (Alq3), the observed peak–shifts are restricted to just one unoccupied orbital, the LEMO+2, which is mainly localised at the phenoxide side of the quinolinol ligands. Although the shifts differ for the individual edges, the main interaction can therefore be assigned to this orbital. In summary, NEXAFS spectroscopy, if performed with great care in terms of experimental details and data analysis especially for the gas phase data, provides very detailed and highly interesting data on the changes of the electronic structure of organic molecules upon condensation. The present data can be applied as a reference for further experimental and (highly desired) theoretical investigations, which are needed for a comprehensive understanding of the complex interaction mechanisms between organic molecules.
The thesis investigates the electrical transport properties of different π-conjugated organic semiconductors applied as active semiconducting material in organic field-effect transistor (OFET) devices. Theses organic materials are αω-dihexylquaterthiophene (DH4T), the tetrathiafulvalene (TTF) derivatives dibenzene-tetrathiafulvalene (DB-TTF) and dithiophene-tetrathiafulvalene (DT-TTF), and polytriarylamine (PTAA). The latter material is an amorphous polymer, the three others are small molecule oligomer materials. Different deposition methods were applied and compared. The investigations in the thesis treat the pure characterisation of the above materials with their different properties in OFET devices. Furthermore, the aim was to observe and analyse general rules and effects in OFETs depending on the structure, previous history, and the device scaling. Therefore, different tools and special analysing methods were developed and applied. These are a standard characterisation method for the classification of the used organic semiconductor, temperature dependent electrical characterisation investigating the electrical transport properties, the newly developed in situ measurement method of OFET devices, the downscaling of the OFET devices of channel length below 100 nm, and the lithographical structuring of a PTAA film.
This thesis was dedicated to the studies of the electronic and chemical properties of liquids and solutions using soft x-ray spectroscopies. The used photon-in-photon-out methods namely x-ray absorption spectroscopy (XAS), x-ray emission spectroscopy (XES), and resonant inelastic x-ray scattering (RIXS) appeared to be an excellent choice for these studies. In the framework of this thesis, the necessary experimental setup for using the above mentioned experimental techniques on liquids was developed. Hereby, a new flow-through liquid cell was introduced which simplifies the studies of liquids and solutions. The cell design is very flexible and thus can be modified for gases and liquid/solid interfaces. With this cell it is possible to study the samples under well-controlled conditions (temperature and flow rate). The novel flow-through liquid cell is part of the new SALSA synchrotron endstation including an electron analyzer and a novel high-resolution, high-transmission soft x-ray spectrometer. The latter makes it possible to measure two-dimensional RIXS maps in a very short time, which include the full excitation and emission information in one plot. Making use of the new instrumentation, a variety of different liquids and solutions were investigated. As first system, aqueous solutions of sodium hydroxide (NaOH) and sodium deuteroxide (NaOD) were investigated. In the XAS as well as in the XES spectra a pronounced concentration dependence was found. At non-resonant energies, the spectra are dominated by the solvent and thus look similar to water. Making use of the pre-pre-edge in the absorption spectra which can exclusively be attributed to OH- / OD- it was possible to extract the resonant emission spectra of the ions which show an indication for proton dynamics during the core-hole lifetime. For the solid state NaOH XES spectra it was possible to reveal a high energetic shoulder and a low energetic shoulder at the high energy emission feature. These shoulders can be assigned to self-dissociation processes where OH- forms O2- ions and H2O. The study of NaOH was also of interest for the studies of the amino acids, which were in the focus of the next part, since the pH-values of the respective solutions were controlled by NaOH. In the next part of this thesis, amino acid solutions were investigated. Amino acids are the building blocks of peptides and proteins and thus important for life science. The investigated representatives were glycine, the simplest amino acid, and lysine, an amino acid with two amine groups. Both amino acids react on pH-value changes at the amine group where the local environment at the nitrogen atom changes (NH2 ↔ NH3+). A strong change of the spectra induced by this protonation/deprotonation could be found. Furthermore, for low pH-values (protonated amine groups) the amine groups are influenced by strong proton dynamics. First DFT calculations confirm the dissociation model of the amino acids. Qualitatively the high energy peak in the N K XES spectra can be attributed to the deprotonated amine group and the low energy area for the protonated amine group. Besides amino acids, alcohols and acids are important in biological processes. Therefore, the smallest alcohol (methanol) and the smallest carboxylic acid (acetic acid) were under investigation. For the liquid methanol XES spectra a very good agreement with DFT calculations of gas phase methanol could be found. This observation suggests that the influence of the environment (hydrogen bonding) on the spectra is small. The achieved spectra are in good agreement with DFT calculations found in literature. It was possible to selectively excite the two non-equivalent oxygen atoms in acetic acid and to reveal the carboxyl specific C K XES. The carbon XAS spectra showed strong differences compared to gas phase measurements which might be a hint for the influence of the hydrogen bond network. The investigation of the electronic and chemical properties of liquids and solutions is a very young field of research and the results presented in this thesis show that it is a very interesting topic. The presented results can be seen as the fundamental frame work for all following studies. With the understanding of basic, i.e., simple, systems as shown in this work it will be possible to understand complex biological systems in their native environment, e.g., peptides and proteins, which are the building blocks of life.
The goal of the work presented in this thesis was to explore the possibilities and limitations of MRI / MRS using an ultra high field of 17.6 tesla. A broad range of specific applications and MR methods, from MRI to MRSI and MRS were investigated. The main foci were on sodium magnetic resonance spectroscopic imaging of rodents, magnetic resonance spectroscopy of the mouse brain, and the detection of small amounts of iron labeled stem cells in the rat brain using MRI Sodium spectroscopic imaging was explored since it benefits tremendously from the high magnetic field. Due to the intrinsically low signal in vivo, originating from the low concentrations and short transverse relaxation times, only limited results have been achieved by other researchers until now. Results in the literature include studies conducted on large animals such as dogs to animals as small as rats. No studies performed on mice have been reported, despite the fact that the mouse is the most important laboratory animal due to the ready availability of transgenic strains. Hence, this study concentrated on sodium MRSI of small rodents, mostly mice (brain, heart, and kidney), and in the case of the brain on young rats. The second part of this work concentrated on proton magnetic resonance spectroscopy of the rodent brain. Due to the high magnetic field strength not only the increasing signal but also the extended spectral resolution was advantageous for such kind of studies. The difficulties/limitations of ultra high field MRS were also investigated. In the last part of the presented work detection limits of iron labeled stem cells in vivo using magnetic resonance imaging were explored. The studies provided very useful benchmarks for future researchers in terms of the number of labeled stem cells that are required for high-field MRI studies. Overall this work has shown many of the benefits and the areas that need special attention of ultra high fields in MR. Three topics in MRI, MRS and MRSI were presented in detail. Although there are significant additional difficulties that have to be overcome compared to lower frequencies, none of the work presented here would have been possible at lower field strengths.
ZnO-based semiconductors were studied by Raman spectroscopy and complementary methods (e.g. XRD, EPS) with focus on semimagnetic alloying with transition metal ions, doping (especially p-type doping with nitrogen as acceptor), and nanostructures (especially wet-chemically synthesized nanoparticles).
The role of elastic interactions, particularly for the self-organized formation of periodically faceted interfaces, was investigated in this thesis for archetype organic-metal interfaces. The cantilever bending technique was applied to study the change of surface stress upon formation of the interface between 3,4,9,10-perylene-tetracarboxylic-dianhydride (PTCDA) and Ag(111). This system is known to form a chemisorptive bonding. Indeed, the sign and the coverage-dependence of the surface stress change are in agreement to models and previous measurements of chemisorptive systems in literature. While the adsorption of molecules into the large domains is associated with a negative, i.e. compressive stress change, the formation of domain boundaries in the molecular layer induces a stress change of opposite sign, increasing the surface stress. The magnitude of the surface stress change of (-0.30 +- 0.10} N/m reflects a relatively weak binding of a PTCDA molecule to each individual single silver atom. It is emphasized, however, that if normalized to the surface stress change per molecule, this value corresponds to a stress change of (-2.2 +- 0.2) eV per molecule which is in the order of the suspected binding energy of this system. Therefore, these experiments reveal elastic interactions to be of significant order of magnitude for this system class. Thereby, they add a new point of view to the understanding of these interfaces. Besides, since the results are in agreement with the well-known properties of this interface, they establish the cantilever bending technique in the field of organic-metal interfaces. The mere existence of a bending of the sample implies an interesting detail for the PTCDA/Ag(111) interface in particular. It is the first experimental evidence for a structural change in the topmost substrate layers upon adsorption of PTCDA on Ag(111). Since such a modification has significant implications for the interpretation of other experimental results, a further investigation with more quantitative structural methods appears necessary. The main focus of this work, however, was on the investigation of the formation of the long-range ordered, self-organized faceted PTCDA/Ag(10 8 7) interface. Reciprocal space maps of this interface were recorded both by spot profile analysis low energy electron diffraction (SPA-LEED) and low energy electron microscopy (LEEM) in selected area LEED mode. Complementary to the reciprocal data, also microscopic real-space LEEM data were used to characterize the morphology of this interface. Six different facet faces ((111), (532), (743), (954), (13 9 5), and (542)) were observed for the preparation path of molecular adsorption on the substrate kept at 550 K. Facet-sensitive dark-field LEEM localized these facets to grow in homogeneous areas of microscopic extensions. If the pristine mesoscopic orientation locally deviates from the average orientation, e.g. in pristine step density, locally different facet types are formed, distorting the otherwise regular mesoscopic pattern. Hence, the original mesoscopic orientation of the substrate strongly determines the degree of order of the faceted surface and the facet species formed. The temperature-dependence of the interface formation was studied in a range between 418 K and 612 K in order to learn more about the kinetics of the process. Additional steeper facets of 27° inclination with respect to the (111) surface were observed in the low temperature regime. Furthermore, using facet-sensitive dark-field LEEM, spatial and size distributions of specific facets were studied for the different temperatures. The nucleation density of the facets did not depend on temperature and can therefore be concluded not to be limited by diffusion. Moreover, the facet dimensions were statistically analyzed. The total island size of the facets follows an exponential distribution, indicating a random growth mode in absence of any mutual facet interactions. While the length distribution of the facets also follows an exponential distribution, the width distribution is peaked, reflecting the high degree of lateral order. This anisotropy is temperature-dependent and occurs starting above 478 K substrate temperature during growth. The peaked distribution indicates the presence of a long-range interaction which leads to the structural order of the self-organized grating. The origin of this long-range interaction was investigated combining three complementary in-situ methods, all providing new insights into the formation of faceted organic-metal interfaces: the cantilever bending technique, high-resolution low energy electron diffraction (SPA-LEED), and microscopy (LEEM). The cantilever bending technique was applied for the first time to a faceting system at all. Below the faceting transition temperature the surface stress change associated with the formation of the PTCDA/Ag(10 8 7) interface resembles in shape and magnitude the one observed for the reference interface PTCDA/Ag(111). But above the transition temperature the absolute surface stress change of (-0.67 +- 0.10) N/m observed for the faceted PTCDA/Ag(10 8 7) interface is considerably larger than for the previous cases. Moreover, the stress change happens in distinguishable stages with a clearly resolvable fine structure of regimes of positive and negative stress changes. These different regimes of surface stress change can be correlated to different stages of the structural phase transition observed by the structural in-situ methods. Thereby, morphological objects (i.e. the facets) are assigned to a specific stress character. Thus, domains of different stress character can be identified on the surface. These stress domains are the prerequisite to apply continuum descriptions of the self-ordering process based on elastic interactions. Hence, the results are the first experimental verification that these continuum descriptions are indeed also applicable to the whole system class of faceting organic-metal interfaces. In conclusion, the results provide strong evidence for elastic interactions being the physical origin of long-range order for this system. In addition, the clear correlation of structural phase transition and surface stress change regimes suggests surface stress to play also an important role for the kinetics of the system. Indeed, the system seems to try to limit the overall stress change during the interface formation by forming facets of positive and negative stress character. Hence, the selection of specific facets could depend on the corresponding stress character. Furthermore, the system seems willing to re-facet at high coverages in order to prevent imperfect domain boundaries which are associated with an increase of surface stress. Finally, template-assisted growth of lateral, heterorganic nanostructures has been explored. Therefore, self-assembled monolayers as a second archetype class of molecules were grown on partially covered PTCDA/Ag(10 8 7) interfaces. Indeed, using standard surface science techniques, the basic principle of this growth scheme was confirmed to be successful.
Nuclear magnetic resonance (NMR) imaging is a well-established imaging technique. If the achieved spatial resolution is below 100 um, it is usually denoted as magnetic resonance microscopy (MRM). The spatial resolution limit is on the order of a few um. As a downside, high resolution imaging is usually time-consuming and technological requirements are very sumptuous. Furthermore, miniaturization of the radiofrequency (RF) coil leading to a so-called microcoil is necessary; it also brings along detrimental effects. Therefore, there is a high potential for optimizing present MRM methods. Hence it is the aim of this work to improve and further develop present methods in MRM with focus on the RF coil and to apply those methods on new biological applications. All experiments were conducted on a Bruker 17.6 T system with a maximum gradient strength of 1 T/m and four RF receiver channels. Minimizing the RF coil dimensions, leads to increased artefacts due to differences in magnetic susceptibility of the coil wire and surrounding air. Susceptibility matching by immersing the coil in FC-43 is the most common approach that fulfills the requirements of most applications. However, hardly any alternatives are known for cases where usage of FC-43 is not feasible due to its specific disadvantages. Two alternative substances (bromotricholoromethane and Fomblin Y25) were presented and their usability was checked by susceptibility determination and demonstration experiments after shimming under practical conditions. In a typical MRM microcoil experiment, the sample volume is significantly smaller than the maximum volume usable for imaging. This mismatch has been optimized in order to increase the experiment efficiency by increasing the number of probe coils and samples used. A four-channel probehead consisting of four individual solenoid coils suited for cellular imaging of Xenopus laevis oocytes was designed, allowing simultaneous acquisition from four samples. All coils were well isolated and allowed quantitative image acquisition with the same spatial resolution as in single coil operation. This method has also been applied in other studies for increased efficiency: using X. laevis oocytes as a single cell model, the effect of chemical fixation on intracellular NMR relaxation times T1 and T2 and on diffusion was studied for the first time. Significant reduction of relaxation times was found in all cell compartments; after reimmersion in buffer, values return close to the initial values, but there were small but statistically significant differences due to residual formaldehyde. Embryos of the same species have been studied morphologically in different developmental stages. Wild type embryos were compared to embryos that had experienced variations in protein levels of chromosomal proteins HMGN and H1A. Significant differences were found between wild type and HMGN-modified embryos, while no difference was observed between wild type and H1-modified embryos. These results were concordant with results obtained from light microscopy and histology. The technique of molecular imaging was also performed on X. laevis embryos. Commercially available antibodies coupled to ultrasmall superparamagnetic iron oxide (USPIO) dextrane coated particles (MACS) served as a specific probe detectable by MRM, the aim being the detection of tissue specific contrast variations. Initially, the relaxivity of MACS was studied and compared to Resovist and VSOP particles. The iron concentration was determined quantitatively by using a general theoretical approach and results were compared to values obtained from mass spectroscopy. After incubation with MACS antibodies, intraembryonal relaxation times were determined in different regions of the embryo. These values allowed determination of local iron oxide particle concentrations, and specific binding could be distinguished from unspecific binding. Although applications in this work were focused on X. laevis oocytes and embryos, 3D-imaging on a beewolf head was also carried out in order to visualize the postpharyngeal gland. Additionally, an isolated beewolf antenna was imaged with a spatial resolution of (8 um)^3 for depiction of the antennal glands by using a microcoil that was specially designed for this sample. The experiments carried out in this work show that commercially available MRM systems can be significantly optimized by using small sample-adapted RF coils and by parallel operation of multiple coils, by which the sample throughput and thus time-efficiency is increased. With this optimized setup, practical use was demonstrated in a number of new biological applications.
Besides image contrast, imaging speed is probably the most important consideration in clinical magnetic resonance imaging (MRI). MR scanners currently operate at the limits of potential imaging speed, due to technical and physiological problems associated with rapidly switched gradient systems. Parallel imaging (parallel MRI or pMRI) is a method which allows one to significantly shorten the acquisition time of MR images without changing the contrast behavior of the underlying MR sequence. The accelerated image acquisition in pMRI is accomplished without relying on more powerful technical equipment or exceeding physiological boundaries. Because of these properties, pMRI is currently employed in many clinical routines, and the number of applications where pMRI can be used to accelerate imaging is increasing. However, there is also growing criticism of parallel imaging in certain applications. The primary reason for this is the intrinsic loss in the SNR due to the accelerated acquisition. In addition, other effects can also lead to a reduced image quality. Due to unavoidable inaccuracies in the pMRI reconstruction process, local and global errors may appear in the final reconstructed image. The local errors are visible as noise enhancement, while the global errors result in the so-called fold-over artifacts. The appearance and strength of these negative effects, and thus the image quality, depend upon different factors, such as the parallel imaging method chosen, specific parameters in the method, the sequence chosen, as well as specific sequence parameters. In general, it is not possible to optimize all of these parameters simultaneously for all applications. The application of parallel imaging in can lead to very pronounced image artifacts, i.e. parallel imaging can amplify errors. On the other hand, there are applications such as abdominal MR or MR angiography, in which parallel imaging does not reconstruct images robustly. Thus, the application of parallel imaging leads to errors. In general, the original euphoria surrounding parallel imaging in the clinic has been dampened by these problems. The reliability of the pMRI methods currently implemented is the main criticism. Furthermore, it has not been possible to significantly increase the maximum achievable acceleration with parallel imaging despite major technical advances. An acceleration factor of two is still standard in clinical routine, although the number of independent receiver channels available on most MR systems (which are a basic requirement for the application of pMRI) has increased by a factor of 3-6 in recent years. In this work, a novel and elegant method to address this problem has been demonstrated. The idea behind the work is to combine two methods in a synergistic way, namely non-Cartesian acquisition schemes and parallel imaging. The so-called non-Cartesian acquisition schemes have several advantages over standard Cartesian acquisitions, in that they are often faster and less sensitive to physiological noise. In addition, such acquisition schemes are very robust against fold-over artifacts even in the case of vast undersampling of k-space. Despite the advantages described above, non-Cartesian acquisition schemes are not commonly employed in clinical routines. A reason for that is the complicated reconstruction techniques which are required to convert the non-Cartesian data to a Cartesian grid before the fast Fourier transformation can be employed to arrive at the final MR image. Another reason is that Cartesian acquisitions are routinely accelerated with parallel imaging, which is not applicable for non-Cartesian MR acquisitions due to the long reconstruction times. This negates the speed advantage of non-Cartesian acquisition methods. Through the development of the methods presented in this thesis, reconstruction times for accelerated non-Cartesian acquisitions using parallel imaging now approach those of Cartesian images. In this work, the reliability of such methods has been demonstrated. In addition, it has been shown that higher acceleration factors can be achieved with such techniques than possible with Cartesian imaging. These properties of the techniques presented here lead the way for an implementation of such methods on MR scanners, and thus also offer the possibility for their use in clinical routine. This will lead to shorter examination times for patients as well as more reliable diagnoses.
This work studies the fundamental connection between lattice strain and magnetic anisotropy in the ferromagnetic semiconductor (Ga,Mn)As. The first chapters provide a general introduction into the material system and a detailed description of the growth process by molecular beam epitaxy. A finite element simulation formalism is developed to model the strain distribution in (Ga,Mn)As nanostructures is introduced and its predictions verified by high-resolution x-ray diffraction methods. The influence of lattice strain on the magnetic anisotropy is explained by an magnetostatic model. A possible device application is described in the closing chapter.
The control of quantum mechanical processes, especially the selective manipulation of photochemical reactions by shaped fs laser pulses was successfully demonstrated in many experiments in the fields of physics, chemistry and biology. In this work, attention is directed to the control of two systems that mark a bridge to real synthetic chemistry. In a liquid phase environment the outcome of the photo-induced Wolff rearrangement of an industrially relevant diazonaphthoquinone compound, normally used in photoresists (e.g. Novolak) was optimized using shaped fs laser pulses. In the second series of experiments chemical reactions on a catalyst metal surface which comprise laser induced molecular bond formation channels were selectively manipulated for the first time. The control of liquid phase reactions necessitates adequate spectroscopic signals that are characteristic for the formed product species. Therefore, a pump-probe setup for transient absorption spectroscopy in the mid-infrared for the purpose of investigating ultrafast structural changes of molecules during photoreactions was constructed. This versatile setup enables to monitor structural changes of molecules in the liquid phase and to find appropriate feedback signals for the control of these processes. Prior to quantum control experiments, the photoinduced Wolff-rearrangement reaction of 2-diazo-1-naphthoquinone (DNQ) dissolved in water and methanol was thoroughly investigated. Steady state absorption measurements in the mid-infrared in combination with quantum chemical density functional theory (DFT) calculations revealed the characteristic vibrational bands of DNQ and of possible products. A mid-infrared transient absorption study was performed, to illuminate the structural dynamics of the ultrafast rearrangement reaction of DNQ. The experimental observations indicate, that the Wolff rearrangement reaction of DNQ proceeds within 300 fs. A model for the relaxation dynamics of the ketene photoproduct and DNQ after photoexcitation can be deduced that fits the measured data very well. The object of the quantum control experiments on DNQ was the improvement of the ketene yield. It was shown that the ketene formation after Wolff rearrangement of DNQ is very sensitive to the shape of the applied excitation laser pulses. The variation of single parameters, like the linear chirp as well as the pulse separation of colored double pulses lead to the conclusion that the well known intrapulse dumping mechanism is responsible for the impact of the frequency ordering within the excitation pulse on the photoproduct yield. Adaptive optimizations using a closed learning loop basically lead to the same result. Adaptive fs quantum control was also applied to surface reactions on a catalyst metal surface for the first time. Therefore, the laser-induced catalytic reactions of carbon monoxide (CO) and hydrogen (H2) on a Pd(100) single crystal surface were studied. This photochemical reaction initiated with fs laser pulses has not been observed before. Several product molecules could be synthesized, among them also species (e.g. CH^3+) for whose formation three particles are involved. The systematic variation of different parameters showed that the reactions are sensitive to the catalyst surface, the composition of the adsorbate and to the laser properties. A pump-probe study revealed that they occur on an ultrafast time scale. These catalytic surface reactions were then investigated and improved with phaseshaped fs laser pulses. By applying a feedback optimal control scheme, the reaction outcome could be successfully manipulated and the ratio of different reaction channels could be selectively controlled. Evidence has been found that the underlying control mechanism is nontrivial and sensitive to the specific conditions on the surface. The experiments shown here represent the first successful experiment on adaptive fs quantum control of a chemical reaction between adsorbate molecules on a surface. In contrast to previous quantum control experiments, reaction channels comprising the formation of new molecular bonds rather than the cleavage of already existing bonds are controlled. This work successfully showed that quantum control can be extended to systems closer to situations encountered in synthetic chemistry as was demonstrated in the two examples of the optimization of a complicated rearrangement reaction and the selective formation of chemical bonds with shaped fs laser pulses.
Magnetic Resonance Imaging (MRI) is an imaging modality which provides anatomical or functional images of the human body with variable contrasts in an arbitrarily positioned slice without the need for ionizing radiation. In MRI, data are not acquired directly, but in the reciprocal image space (otherwise known as k-space) through the application of spatially variable magnetic field gradients. The k-space is made up of a grid of data points which are generally acquired in a line-by-line fashion (Cartesian imaging). After the acquisition, the k-space data are transformed into the image domain using the Fast Fourier Transformation (FFT). However, the acquisition of data is not limited to the rectilinear Cartesian sampling scheme described above. Non-Cartesian acquisitions, where the data are collected along exotic trajectories, such as radial and spiral, have been shown to be beneficial in a number of applications. However, despite their additional properties and potential advantages, working with non-Cartesian data can be complicated. The primary difficulty is that non-Cartesian trajectories are made up of points which do not fall on a Cartesian grid, and a simple and fast FFT algorithm cannot be employed to reconstruct images from non-Cartesian data. In order to create an image, the non-Cartesian data are generally resampled on a Cartesian grid, an operation known as gridding, before the FFT is performed. Another challenge for non-Cartesian imaging is the combination of unusual trajectories with parallel imaging. This thesis has presented several new non-Cartesian parallel imaging methods which simplify both gridding and the reconstruction of images from undersampled data. In Chapter 4, a novel approach which uses the concepts of parallel imaging to grid data sampled along a non-Cartesian trajectory called GRAPPA Operator Gridding (GROG) is described. GROG shifts any acquired k-space data point to its nearest Cartesian location, thereby converting non-Cartesian to Cartesian data. The only requirements for GROG are a multi-channel acquisition and a calibration dataset for the determination of the GROG weights. Chapter 5 discusses an extension of GRAPPA Operator Gridding, namely Self-Calibrating GRAPPA Operator Gridding (SC-GROG). SC-GROG is a method by which non-Cartesian data can be gridded using spatial information from a multi-channel coil array without the need for an additional calibration dataset, as required in standard GROG. Although GROG can be used to grid undersampled datasets, it is important to note that this method uses parallel imaging only for gridding, and not to reconstruct artifact-free images from undersampled data. Chapter 6 introduces a simple, novel method for performing modified Cartesian GRAPPA reconstructions on undersampled non-Cartesian k-space data gridded using GROG to arrive at a non-aliased image. Because the undersampled non-Cartesian data cannot be reconstructed using a single GRAPPA kernel, several Cartesian patterns are selected for the reconstruction. Finally, Chapter 7 discusses a novel method of using GROG to mimic the bunched phase encoding acquisition (BPE) scheme. In MRI, it is generally assumed that an artifact-free image can be reconstructed only from sampled points which fulfill the Nyquist criterion. However, the BPE reconstruction is based on the Generalized Sampling Theorem of Papoulis, which states that a continuous signal can be reconstructed from sampled points as long as the points are on average sampled at the Nyquist frequency. A novel method of generating the “bunched” data using GRAPPA Operator Gridding (GROG), which shifts datapoints by small distances in k-space using the GRAPPA Operator instead of employing zig-zag shaped gradients, is presented in this chapter. With the conjugate gradient reconstruction method, these additional “bunched” points can then be used to reconstruct an artifact-free image from undersampled data. This method is referred to as GROG-facilitated Bunched Phase Encoding, or GROG-BPE.
Adaptive Polarization Pulse Shaping and Modeling of Light-Matter Interactions with Neural Networks
(2007)
The technique of ultrafast polarization shaping is applied to a model quantum system, the potassium dimer. The polarization dependence of the multiphoton ionization dynamics in this molecule is first investigated in pump–probe experiments, and it is then more generally addressed and exploited in an adaptive quantum control experiment utilizing near–IR polarization–shaped laser pulses. The extension of these polarization shaping techniques to the UV spectral range is presented, and methods for the generation and characterization of polarization–shaped laser pulses in the UV are introduced. Systematic scans of double–pulse sequences are introduced for the investigation and interpretation of control mechanisms. This concept is first introduced and illustrated for an optical demonstration experiment, and it is then applied for the analysis of the intrapulse dumping mechanism that is observed in the excitation of a large dye molecule in solution with ultrashort laser pulses. Shaped laser pulses are employed as a means for obtaining copious amounts of data on light–matter interactions. Neural networks are introduced as a novel tool for generating computer–based models for these interactions from the accumulated data. The viability of this approach is first tested for second harmonic generation (SHG) and molecular fluorescence processes. Neural networks are then utilized for modeling the far more complex coherent strong–field dynamics of potassium atoms.