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Va8.2+ CD8 T-Zellen von LEW.1F Ratten (MHC-Haplotyp f) werden während der Reifung im Thymus zehnfach überselektioniert: 14 Prozent der reifen LEW.1F CD8 T-Zellen exprimieren Va8.2; CD8 T-Zellen von MHC kongenen RT1f- Stämme sind nur zu 1-2 Prozent Va8.2+. Gleichzeitig führt die RT1f-spezifische allogene Stimulation reifer LEW (MHC Haplotyp l) CD8 T-Zellen zu einer bevorzugten Expansion von Va8.2+ T-Zellen. Dies überrascht, da die positive Selektion unreifer Thymozyten eine niedrigere Avidität zwischen T-Zelle und Antigen-präsentierender Zelle erfordern soll als Alloreaktivität. Ein bevorzugter Vb-Gebrauch wurde weder bei RT1f-spezifischer positiver Selektion noch Alloreaktion gefunden. Das Ja-Repertoire von RT1f-alloreaktiven Va8.2 TCR ist restringiert, ihre CDR3a Schleifen sind kurz, homogen und besitzen wenig N-Nukleotidinsertionen; ein hydrophob/amphiphatisches Motiv erhöht wahrscheinlich die Peptidpromiskuität. Va8.2+ LEW.1F T-Zellen besitzen ein weniger restringiertes Ja-Repertoire; ein hydrophobes Motiv der CDR3a-Schleife wurde seltener gefunden; weitere Restriktionen der CDR3a-Schleife fanden wir nicht. Nicht-alloreaktive LEW CD8 T-Zellen zeigten keine Restriktionen im Bereich Ja/CDR3a. Va8.2 vermittelt MHC-spezifische positive Selektion und Alloreaktivität. Alloreaktionen erfordern einen zusätzlichen Beitrag der CDR3a-Schleife, deren Gestaltung wahrscheinlich Kontakte mit einem hochdiversen Peptidsatz und zusätzliche MHC-Molekül-Kontakte ermöglicht. Unsere Ergebnisse sind vereinbar mit Röntgenstrukturanalysen des T-Zellrezeptor (TCR)/pMHC-Komplexes und dem "differential-avidity model" der TCR-vermittelten Antigenerkennung bei thymischer Selektion und Aktivierung reifer T-Zellen. Sie dokumentieren die Bedeutung der Erkennung polymorpher MHC-Strukturen durch keimbahnkodierte TCR-Segmente und sprechen gegen eine ausschließliche Peptidspezifität von positiver Selektion und Alloreaktivität.
Candida auris is a globally emerging fungal pathogen responsible for causing nosocomial outbreaks in healthcare associated settings. It is known to cause infection in all age groups and exhibits multi-drug resistance with high potential for horizontal transmission. Because of this reason combined with limited therapeutic choices available, C. auris infection has been acknowledged as a potential risk for causing a future pandemic, and thus seeking a promising strategy for its treatment is imperative. Here, we combined evolutionary information with reverse vaccinology approach to identify novel epitopes for vaccine design that could elicit CD4+ T-cell responses against C. auris. To this end, we extensively scanned the family of proteins encoded by C. auris genome. In addition, a pathogen may acquire substitutions in epitopes over a period of time which could cause its escape from the immune response thus rendering the vaccine ineffective. To lower this possibility in our design, we eliminated all rapidly evolving genes of C. auris with positive selection. We further employed highly conserved regions of multiple C. auris strains and identified two immunogenic and antigenic T-cell epitopes that could generate the most effective immune response against C. auris. The antigenicity scores of our predicted vaccine candidates were calculated as 0.85 and 1.88 where 0.5 is the threshold for prediction of fungal antigenic sequences. Based on our results, we conclude that our vaccine candidates have the potential to be successfully employed for the treatment of C. auris infection. However, in vivo experiments are imperative to further demonstrate the efficacy of our design.
Aspergillus is an important fungal genus containing economically important species, as well as pathogenic species of animals and plants. Using eighteen fungal species of the genus Aspergillus, we conducted a comprehensive investigation of conserved genes and their evolution. This also allows us to investigate the selection pressure driving the adaptive evolution in the pathogenic species A. fumigatus. Among single-copy orthologs (SCOs) for A. fumigatus and the closely related species A. fischeri, we identified 122 versus 50 positively selected genes (PSGs), respectively. Moreover, twenty conserved genes of unknown function were established to be positively selected and thus important for adaption. A. fumigatus PSGs interacting with human host proteins show over-representation of adaptive, symbiosis-related, immunomodulatory and virulence-related pathways, such as the TGF-β pathway, insulin receptor signaling, IL1 pathway and interfering with phagosomal GTPase signaling. Additionally, among the virulence factor coding genes, secretory and membrane protein-coding genes in multi-copy gene families, 212 genes underwent positive selection and also suggest increased adaptation, such as fungal immune evasion mechanisms (aspf2), siderophore biosynthesis (sidD), fumarylalanine production (sidE), stress tolerance (atfA) and thermotolerance (sodA). These genes presumably contribute to host adaptation strategies. Genes for the biosynthesis of gliotoxin are shared among all the close relatives of A. fumigatus as an ancient defense mechanism. Positive selection plays a crucial role in the adaptive evolution of A. fumigatus. The genome-wide profile of PSGs provides valuable targets for further research on the mechanisms of immune evasion, antimycotic targeting and understanding fundamental virulence processes.