Refine
Has Fulltext
- yes (104)
Is part of the Bibliography
- yes (104)
Year of publication
- 2009 (104) (remove)
Document Type
- Doctoral Thesis (93)
- Journal article (8)
- Master Thesis (2)
- Book article / Book chapter (1)
Language
- English (104) (remove)
Keywords
- Signaltransduktion (5)
- Elementarteilchenphysik (3)
- Genexpression (3)
- Organisches Molekül (3)
- Thrombozyt (3)
- Actin-bindende Proteine (2)
- Ameisen (2)
- Aminosäuren (2)
- Apoptose (2)
- Autonomer Roboter (2)
Institute
- Theodor-Boveri-Institut für Biowissenschaften (19)
- Physikalisches Institut (9)
- Graduate School of Life Sciences (8)
- Institut für Geographie und Geologie (7)
- Institut für Mathematik (7)
- Institut für Theoretische Physik und Astrophysik (7)
- Julius-von-Sachs-Institut für Biowissenschaften (6)
- Institut für Informatik (5)
- Rudolf-Virchow-Zentrum (5)
- Institut für Organische Chemie (4)
EU-Project number / Contract (GA) number
- 223138 (1)
Background
Suicide and non-fatal suicidal behaviour are significant public health issues in Europe requiring effective preventive interventions. However, the evidence for effective preventive strategies is scarce. The protocol of a European research project to develop an optimized evidence based program for suicide prevention is presented.
Method
The groundwork for this research has been established by a regional community based intervention for suicide prevention that focuses on improving awareness and care for depression performed within the European Alliance Against Depression (EAAD). The EAAD intervention consists of (1) training sessions and practice support for primary care physicians,(2) public relations activities and mass media campaigns, (3) training sessions for community facilitators who serve as gatekeepers for depressed and suicidal persons in the community and treatment and (4) outreach and support for high risk and self-help groups (e.g. helplines). The intervention has been shown to be effective in reducing suicidal behaviour in an earlier study, the Nuremberg Alliance Against Depression. In the context of the current research project described in this paper (OSPI-Europe) the EAAD model is enhanced by other evidence based interventions and implemented simultaneously and in standardised way in four regions in Ireland, Portugal, Hungary and Germany.
The enhanced intervention will be evaluated using a prospective controlled design with the primary outcomes being composite suicidal acts (fatal and non-fatal), and with intermediate outcomes being the effect of training programs, changes in public attitudes, guideline-consistent media reporting. In addition an analysis of the economic costs and consequences will be undertaken, while a process evaluation will monitor implementation of the interventions within the different regions with varying organisational and healthcare contexts.
Discussion
This multi-centre research seeks to overcome major challenges of field research in suicide prevention. It pools data from four European regions, considerably increasing the study sample, which will be close to one million. In addition, the study will gather important information concerning the potential to transfer this multilevel program to other health care systems. The results of this research will provide a basis for developing an evidence-based, efficient concept for suicide prevention for EU-member states.
The scope of this work is to develop a novel single-molecule imaging technique by combining atomic force microscopy (AFM) and optical fluorescence microscopy. The technique is used for characterizing the structural properties of multi-protein complexes. The high-resolution fluorescence microscopy and AFM are combined (FIONA-AFM) to allow for the identification of individual proteins in such complexes. This is achieved by labeling single proteins with fluorescent dyes and determining the positions of these fluorophores with high precision in an optical image. The same area of the sample is subsequently scanned by AFM. Finally, the two images are aligned and the positions of the fluorophores are displayed on top of the topographical data. Using quantum dots as fiducial markers in addition to fluorescently labeled proteins, fluorescence and AFM information can be aligned with an accuracy better than 10 nm, which is sufficient to identify single fluorescently labeled proteins in most multi-protein complexes. The limitations of localization precision and accuracy in fluorescence and AFM images are investigated, including their effects on the overall registration accuracy of FIONA-AFM hybrid images. This combination of the two complementary techniques opens a wide spectrum of possible applications to the study of protein interactions, because AFM can yield high resolution (5–10 nm) information about the conformational properties of multi-protein complexes while the fluorescence can indicate spatial relationships of the proteins within the complexes. Additionally, computer simulations are performed in order to validate the accuracy of the registration algorithm.
Platelet activation induces cytoskeletal rearrangements involving a change from discoid to spheric shape, secretion, and eventually adhesion and spreading on immobilized ligands. Small GTPases of the Rho family, such as Rac1 and Cdc42, are known to be involved in these processes by facilitating the formation of lamellipodia and filopodia, respectively. This thesis focuses on the role Rac1 and Cdc42 for platelet function and formation from their precursor cells, the megakaryocytes (MKs), using conditional knock-out mice. In the first part of the work, the involvement of Rac1 in the activation of the enzyme phospholipase (PL) C2 in the signaling pathway of the major platelet collagen receptor glycoprotein (GP) VI was investigated. It was found that Rac1 is essential for PLC2 activation independently of tyrosine phosphorylation of the enzyme, resulting in a specific platelet activation defect downstream of GPVI, whereas signaling of other activating receptors remains unaffected. Since Rac1-deficient mice were protected from arterial thrombosis in two different in vivo models, the GTPase might serve as a potential target for the development of new drugs for the treatment and prophylaxis of cardio- and cerebrovascular diseases. The second part of the thesis deals with the first characterization of MK- and platelet-specific Cdc42 knock-out mice. Cdc42-deficient mice displayed mild thrombo-cytopenia and platelet production from mutant MKs was markedly reduced. Unexpectedly, Cdc42-deficient platelets showed increased granule content and release upon activation, leading to accelerated thrombus formation in vitro and in vivo. Furthermore, Cdc42 was not generally required for filopodia formation upon platelet activation. Thus, these results indicate that Cdc42, unlike Rac1, is involved in multiple signaling pathways essential for proper platelet formation and function. Finally, the outcome of combined deletion of Rac1 and Cdc42 was studied. In contrast to single deficiency of either GTPase, platelet production from double-deficient MKs was virtually abrogated, resulting in dramatic macrothrombocytopenia in the animals. Formed platelets were largely non-functional leading to a severe hemostatic defect and defective thrombus formation in double-deficient mice in vivo. These results demonstrate for the first time a functional redundancy of Rac1 and Cdc42 in the hematopoietic system.
Plants must respond to multiple stimuli in a natural environment. Therefore they need the ability to rapidly reorganise and specifically build up appropriate metabolites to adapt to their environment. Abiotic cues, such as ambient solar radiation, influence the next trophic level directly, but also an altered plant composition triggered by these environmental cues can have an effect on the behaviour of herbivores. The aim of this study was to test effects of the important ultraviolet (UV) radiation on plants and on plant-insect interactions using multi-level investigations. The focus was on the conduction of controlled experiments with broccoli plants in highly engineered greenhouses covered with innovative materials, which only differed in their UV-B transmission. For the first time in this controlled environment the plant-mediated UV-B effects on phloem-feeding aphids were studied. Broccoli plants (Brassica oleracea L. convar. botrytis, Brassicaceae) were under filter tents either exposed to (inclusion, +UV) or not exposed to (exclusion, -UV) UV-A / UV-B radiation. In greenhouses covered with new, innovative materials transmitting high (80%), medium (23%) or low (4%) levels of ambient solar UV-B radiation, in particular the influence of UV-B radiation on broccoli was examined. Plants respond highly specific to environmental stimuli such as UV-B radiation and herbivory. UV-B radiation has a strong impact on the plants’ architecture and flavonoid contents, which can in turn influence plant-insect interactions. Phloem-feeding aphids can be negatively affected by UV-B mediated plant changes. However, a direct effect of UV radiation on the behaviour of herbivores is also evident. Mainly the number, composition and quality of herbivorous species as well as an exceeding of a certain infestation threshold determine the mode of plant changes. In conclusion, UV-B radiation has the potential to harden plants against herbivores and simultaneously increases the concentrations of valuable secondary metabolites for human nutrition in important crop species such as broccoli.
In conclusion, the present thesis demonstrates that the highly desired J-type aggregation of functional perylene bisimide chromophores can be achieved by proper design of monomeric building blocks that direct self-assemble by mutual effects of hydrogen bonding and pi-pi interaction, and on the other hand, are prevented to assemble in columnar stacks owing to their twisted pi-conjugated core and sterically demanding substituents. Furthermore, the self-assembly studies gave new insights into the dynamic aggregation process of low-dimensional extended assemblies with strongly excitonically coupled chromophores. The relationship between commonly known cyanine dye aggregates like that of THIATS and that of the present PBI 1a was investigated by absorption and fluorescence spectroscopy at low temperatures down to 5 K. The formerly unprecedented functional properties of PBI aggregates that are expressed in J-type excitonic coupling hold promise for application in optoelectronic and photovoltaic devices.
Phytohormones are known for their pivotal roles in promoting normal growth and development of the plants and contributing to the mechanism of defense. Although an over simplification, however, they may be categorized as stress specific and growth promoting. SA and JA/Ethylene are implicated in stress responses while auxins, cytokinins and gibberellins are involved in developmental processes. Phytohormones from the above perspective got much attention in the last few decades; however their reciprocal role is currently in focus. It is because of the reason that plant pathogens cause overall hormonal imbalance at host pathogen interface and alter host physiology for the sake of pathogenecity. Despite their importance in growth and development, cytokinins are among the most neglected phytohormones that are usually noticed as consequence rather than a cause of pathogen infection. Results presented in this thesis are based on the hypothesis that elevated levels of CKs embody plants with resistance against hemibiotrophic pathogens. To explore a connection between the spread of P. syringae and its tobacco host, CKs over producing transgenic plants were investigated whereby bacterial IPT gene was expressed under the control of pathogen inducible, tetracycline inducible and developmentally inducible promoters. To further validate the out-come of transgenic plants, various types of cytokinins were exogenously fed to detached tobacco leaves. Mentioned transgenics and exogenous CKs feeding approaches unanimously resulted in, “more cytokinins less disease symptoms” and vice versa. This state of cytokinins mediated resistance was further substantiated with various cellular, signaling, biochemical and microbial approaches wherein levels of SA and JA remained unaffected. Conversely, PR1 gene expression was strongly up-regulated in enhanced cytokinins accumulating samples. Moreover, less accumulation of ROS was observed in IPT expressing sites of the plants as compared to their corresponding controls. Additionally, we neither noticed any direct effect of cytokinins on the growth of P. syringae pv. tabaci nor found presence of anti-microbial peptides in cytokinins enriched extracts. Interestingly, enhanced accumulation of phtyoalexins in elevated CKs status of the plant proved to be a possible gesture in jeopardizing the spread of pathogen. Contrarily, no reduction was observed in the spread of fungal necrotrophic pathogen Sclerotinia sclerotiorum when leaves of elevated CKs were inoculated. Besides host-pathogen interaction in perspective of elevated cytokinins, impact of modulated sugar status of the plant on the spread of pathogen was also investigated. For this purpose, previously generated modulated invertase enzyme tobacco transgenic plants were analyzed. We showed that repression and de-repression of CIN1 gene under the control of tetracycline inducible-promoter did not affect the growth of P. syrinage pv. tabaci in Tet::CIN1 transgenic plants. Moreover, invertase inhibitor tobacco lines expressing NtCIF gene under the control of the same promoter failed to exhibit differential pathogenic responses in induced and non induced status of the plant. Similar was the case of tomato transgenic plants expressing NtCIF gene under the control of invertase gene Lin6 promoter in Lin6:: NtCIF plants for P.syringae pv. tomato DC 3000. Interestingly, when challenged Lin6:: NtCIF tomato plants with Botrytis cinerea, severe disease symptoms were observed on transgenic leaves as compared to control plants. To dissect a potential link between cytokinins and sugar metabolism with its effect on the growth of pathogen, invertase transgenic plants with elevated CKs were probed. When expressed exogenous IPT gene under the control of pathogen inducible promoter (4xJERE::IPT) in transgenic background of Tet::CIN1, we observed localized differences in symptom development for P.syringae pv. tabaci. Similarly, when exogenously fed with kinetin, detached leaves of Tet::CIN1 exhibited retarded growth of P.syringae pv. tabaci as compared to the tetracycline induced leaves. These results led to the conclusion that extracellular invertase may not play an essential role in cytokinins mediated disease resistance against hemibiotrophic pathogens.
We consider competitive location problems where two competing providers place their facilities sequentially and users can decide between the competitors. We assume that both competitors act non-cooperatively and aim at maximizing their own benefits. We investigate the complexity and approximability of such problems on graphs, in particular on simple graph classes such as trees and paths. We also develop fast algorithms for single competitive location problems where each provider places a single facilty. Voting location, in contrast, aims at identifying locations that meet social criteria. The provider wants to satisfy the users (customers) of the facility to be opened. In general, there is no location that is favored by all users. Therefore, a satisfactory compromise has to be found. To this end, criteria arising from voting theory are considered. The solution of the location problem is understood as the winner of a virtual election among the users of the facilities, in which the potential locations play the role of the candidates and the users represent the voters. Competitive and voting location problems turn out to be closely related.
Abstract: 1. The response of dispersal towards evolution largely depends on its heritability for which upper limits are determined by the trait's repeatability. 2. In the Linyphiid spider E. atra, we were able to separate long- and short-distance dispersal behaviours (respectively ballooning and rappelling) under laboratory conditions. By performing repeated behavioural trials for females, we show that average dispersal trait values decrease with increasing testing days. By comparing mated and unmated individuals during two periods (before and after mating for the mated group, and the same two periods for the unmated group), we show that mating has no effect on the mean displayed dispersal behaviour or its within-individual variation. Repeatabilities were high and consistent for ballooning motivation, but not for rappelling. 3. Ballooning motivation can be regarded as highly individual-specific behaviour, while general pre-dispersal and rappelling behaviours showed more individual variation. Such difference in repeatability between long-and short-distance dispersal suggests that short-and long-distance dispersal events are triggered by different ecological and evolutionary mechanisms.
This study presents new petrological results obtained from high-grade metamorphic rocks of the Beit Bridge, Mahalapye and Phikwe Complexes, which constitute the Central Zone of the Limpopo Belt in southern Africa. These results provide detailed information about the prograde and retrograde pressure-temperature (P-T) evolution of the three investigated complexes and, in concert with geochronological data, form the basis for the development of a coherent geodynamic model for the evolution of the Limpopo’s Central Zone. The P-T paths were inferred by the thorough investigation of silica-saturated and silica- undersaturated metapelitic and metabasic rocks, comprising six sillimanite-garnet-cordierite gneisses, four (garnet)-biotite-plagioclase gneisses, two garnet-orthopyroxene-biotite-Kfeldspar-plagioclase gneisses, one garnet- cordierite-orthoamphibole fels, one garnet-biotite amphibolite, and one garnet-clinopyroxene amphibolite. P-T points and P-T evolutions were derived by the application of conventional geothermobarometers, and quantitative phase diagrams in the systems Na2O - CaO - K2O - FeO - MgO - Al2O3 - SiO2 - H2O - TiO2 - O (NCKFMASHTiO), and MnO - TiO2 - Na2O - CaO - K2O - FeO - MgO - Al2O3 - SiO2 - H2O (MnTiNCKFMASH) - using the computer software THERMOCALC and THERIAK-DOMINO. The petrological information, in particular those obtained by comparison between observed and thermodynamically calculated mineral assemblages, zonations and modes, in combination with new and existing geochronological data provide evidence that rocks from the three investigated complexes underwent slightly different P-T evolutions at different times. The samples from the Bulai Pluton area (Beit Bridge Complex) provide evidence for a Neoarchean high-grade metamorphic event at ~2.64 Ga (M2), with peak P-T conditions of ~850°C at 8-9 kbar, and a decompression-cooling path to ~750°C at 5-6 kbar. This metamorphic evolution perhaps took place in a magmatic arc setting. In contrast, samples from the Mahalapye and Phikwe Complex document a Palaeoproterozoic event at ~2.03-2.05 Ga (M3), and were subject to different styles of prograde metamorphism. Metamorphic rocks from the Mahalapye Complex experienced a high-temperature low-pressure (HT-LP) metamorphic overprint, accompanied by the emplacement of voluminous granite bodies between 2.06 and 2.02 Ga, and provide evidence for a slightly prograde decompression from ~650°C/7 kbar to ~800°C/5.5 kbar. In contrast, the metamorphic rocks from the Phikwe Complex provide evidence for a simultaneous pressure and temperature increase from ~600°C/6 kbar to ~750°C/8 kbar, in the absence of significant Palaeoproterozoic magmatism. The HT-LP metamorphic evolution of the Mahalapye Complex is interpreted to be initiated by the underplating of hot mafic melts, either formed in response to SE-subduction during the Kheis-Magondi orogeny, and/or by contemporaneous mantle plume activities related to the formation of the Bushveld Complex. In contrast, the prograde pressure and temperature increase reflected by the rocks from the Phikwe Complex rather reflects successive crustal stacking at ~2.03 Ga. This stacking, which is also reported from many other units throughout the Limpopo Belt, is interpreted to result from the final convergence between the Kaapvaal and Zimbabwe Cratons, perhaps caused by SE-directed compression in response to the Kheis-Magondi orogeny between ~2.06 and 1.90 Ga.
Abstract: Inbreeding depression, asymmetries in costs or benefits of dispersal, and the mating system have been identified as potential factors underlying the evolution of sex-biased dispersal. We use individual-based simulations to explore how the mating system and demographic stochasticity influence the evolution of sex-specific dispersal in a metapopulation with females competing over breeding sites, and males over mating opportunities. Comparison of simulation results for random mating with those for a harem system (locally, a single male sires all offspring) reveal that even extreme variance in local male reproductive success (extreme male competition) does not induce male-biased dispersal. The latter evolves if the between-parch variance in reproductive success is larger for males than females. This can emerge due to demographic stochasticity if the habitat patches are small. More generally, members of a group of individuals experiencing higher spatio-temporal variance in fitness expectations may evolve to disperse with greater probability than others.
Vegetation structure can profoundly influence patterns of abundance, distribution, and reproduction of herbivorous insects and their susceptibility to natural enemies. The three main structural traits of herbaceous vegetation are density, height, and connectivity. This study determined the herbivore response to each of these three parameters by analysing oviposition patterns in the field and studying the underlying mechanisms in laboratory bioassays. The generalist leaf beetle, Galeruca tanaceti L. (Coleoptera: Chrysomelidae), preferentially deposits its egg clutches on non-host plants such as grasses. Earlier studies revealed that oviposition within structurally complex vegetation reduces the risk of egg parasitism. Consequently, leaf beetle females should prefer patches with dense, tall, or connected vegetation for oviposition in order to increase their reproductive success. In the present study, we tested the following three hypotheses on the effect of stem density, height, and connectivity on oviposition: (1) Within habitats, the number of egg clutches in areas with high stem densities is disproportionately higher than in low-density areas. The number of egg clutches on (2) tall stems or (3) in vegetation with high connectivity is higher than expected for a random distribution. In the field, stem density and height were positively correlated with egg clutch presence. Moreover, a disproportionately high presence of egg clutches was determined in patches with high stem densities. Stem height had a positive influence on oviposition, also in a laboratory two-choice bioassay, whereas stem density and connectivity did not affect oviposition preferences in the laboratory. Therefore, stem height and, potentially, density, but not connectivity, seem to trigger oviposition site selection of the herbivore. This study made evident that certain, but not all traits of the vegetation structure can impose a strong influence on oviposition patterns of herbivorous insects. The results were finally compared with data on the movement patterns of the specialised egg parasitoid of the herbivore in comparable types of vegetation structure.
In this thesis, we present novel approaches for formation driving of nonholonomic robots and optimal trajectory planning to reach a target region. The methods consider a static known map of the environment as well as unknown and dynamic obstacles detected by sensors of the formation. The algorithms are based on leader following techniques, where the formation of car-like robots is maintained in a shape determined by curvilinear coordinates. Beyond this, the general methods of formation driving are specialized and extended for an application of airport snow shoveling. Detailed descriptions of the algorithms complemented by relevant stability and convergence studies will be provided in the following chapters. Furthermore, discussions of the applicability will be verified by various simulations in existing robotic environments and also by a hardware experiment.
The main focus of this thesis was the synthesis and analysis of multifunctional oligopeptides. The study of their non-covalent interactions with various counterparts revealed interesting new results, leading to both methodological and application related progress. The first project of this thesis concentrated on the in-depth analysis of the peptide receptor CBS-Lys-Lys-Phe-NH2 to acquire a better understanding of its binding mode upon complexation with a substrate. In this context it was possible to develop—in cooperation with the group of Prof. Sebastian Schlücker—a direct and label free spectroscopic detection of immobilized compounds which are often found in combinatorial libraries. This new screening method utilizes the advantages of the surface enhanced Raman spectroscopy and allowed for the first time a surface mapping of a single polystyrene bead for the identification of peptides in femtomolar concentrations. Hence, this method allows a very fast and sensitive detection of resin bound compounds. The development of this promising new approach set the starting point for future experiments to enable on-bead library screenings and to investigate the complex formation of immobilized compounds. After the comprehensive analysis of the basic structural features of small peptide receptors in the first part of this thesis, the second big block focused on its in vitro evaluation using biological relevant targets. Therefore, several different modifications of the initial peptide structures were synthesized. These modifications provided a molecular toolkit for the tailor made synthesis of structures individually designed for the respective target. The first tests addressed the interaction with Alzheimer’s related amyloid fibrils. During these experiments, the successful SPPS syntheses of tri- and tetravalent systems were achieved. The comparison of the multivalent form with the corresponding monovalent version was then under special investigations. These concentrated mainly on the interaction with various bacteria strains, as well as with different parasites. To localize the compounds within the organisms, the synthesis of fluorescence labelled versions was achieved. In addition, several compounds were tested by the Institute for Molecular Infection Biology of the University of Würzburg for their antibacterial activity. This thorough evaluation of the biological activity generated precious information about the influence of small structural changes in the peptide receptors. Especially the distinct influence of the multivalency effect and the acquired synthetic skills led to the development of an advanced non-covalent recognition event, as described in the final project of this thesis. The last part of this thesis discussed the development of a novel inhibitor for the serine protease beta-tryptase based on a tailor-made surface recognition event. It was possible to study and analyze the complex interaction with the unique structure of tryptase, that features a tetrameric frame and four catalytic cleavage sites buried deep inside of the hollow structure. However, the point of attack were not the four binding pockets, as mostly described in the literature, but rather the acidic areas around the cleavage sites and at the two circular openings. These should attract peptides with basic residues, which then can block the accessibility to the active sites. A combinatorial library of 216 tetravalent peptide compounds was synthesized to find the best structural composition for the non-covalent inhibition of beta-tryptase. For the screening of the library a new on-bead assay was applied. With this method a simultaneous readout of the total inhibition of all library members was possible, thus allowing a fast and direct investigation of the still resin bound inhibitors. Several additional experiments in solution unveiled the kinetics of the inhibition process. In conclusion, both mono- and multivalent inhibitors interact in a non-destructive and reversible way with the tryptase.
The study investigates the water resources and aquifer dynamics of the igneous fractured aquifer-system of the Troodos Mountains in Cyprus, using a coupled, finite differences water balance and groundwater modelling approach. The numerical water balance modelling forms the quantitative framework by assessing groundwater recharge and evapotranspiration, which form input parameters for the groundwater flow models. High recharge areas are identified within the heavily fractured Gabbro and Sheeted Dyke formations in the upper Troodos Mountains, while the impervious Pillow Lava promontories - with low precipitation and high evapotranspiration - show unfavourable recharge conditions. Within the water balance studies, evapotranspiration is split into actual evapotranspiration and the so called secondary evapotranspiration, representing the water demand for open waters, moist and irrigated areas. By separating the evapotranspiration of open waters and moist areas from the one of irrigated areas, groundwater abstraction needs are quantified, allowing the simulation of single well abstraction rates in the groundwater flow models. Two sets of balanced groundwater models simulate the aquifer dynamics in the presented study: First, the basic groundwater percolation system is investigated using two-dimensional vertical flow models along geological cross-sections, depicting the entire Troodos Mountains up to a depth of several thousands of metres. The deeply percolating groundwater system starts in the high recharge areas of the upper Troodos, shows quasi stratiform flow in the Gabbro and Sheeted Dyke formations, and rises to the surface in the vicinity of the impervious Pillow Lava promontories. The residence times mostly yield less than 25 years, the ones of the deepest fluxes several hundreds of years. Moreover, inter basin flow and indirect recharge of the Circum Troodos Sedimentary Succession are identified. In a second step, the upper and most productive part of the fractured igneous aquifer-system is investigated in a regional, horizontal groundwater model, including management scenarios and inter catchment flow studies. In a natural scenario without groundwater abstractions, the recovery potential of the aquifer is tested. Predicted future water demand is simulated in an increased abstraction scenario. The results show a high sensitivity to well abstraction rate changes in the Pillow Lava and Basal Group promontories. The changes in groundwater heads range from a few tens of metres up to more than one hundred metres. The sensitivity in the more productive parts of the aquifer-system is lower. Inter-catchment flow studies indicate that - besides the dominant effluent conditions in the Troodos Mountains - single reaches show influent conditions and are sub-flown by groundwater. These fluxes influence the local water balance and generate inter catchment flow. The balanced groundwater models form thus a comprehensive modelling system, supplying future detail models with information concerning boundary conditions and inter-catchment flow, and allowing the simulation of impacts of landuse or climate change scenarios on the dynamics and water resources of the Troodos aquifer-system.
The bidirectional influence of parenchymal cells and cells of the immune system, especially of antigen-presenting and CD8\(^+\) T cells, in situations of putative auto- immune pathogenicity and degeneration was the main topic of this thesis. In the first part, the influence of human muscle cells on antigen-presenting cells was investigated. In inflammatory myopathies prominent infiltrates of immune cells containing T cells and antigen-presenting cells like macrophages and dendritic cells are present. The hypothesis was that human myoblasts have an inhibiting influence on these antigen-presenting cells under homeostatic conditions. A dysfunction or impairment under inflammatory circumstances might contribute to the development of myopathic conditions. The surface analysis of dendritic cells cocultured with myoblasts showed that immature dendritic cells could be driven into a reversible semi- mature state with significantly elevated levels of CD80. These dendritic cells were additionally characterized by their inhibiting function on T-cell proliferation. It was also shown that the lysates of healthy myoblasts could strongly enhance the phagocytic ability of macrophages, which could help with muscle regeneration and which might be disturbed in myositis patients. The second part of this thesis was about the clonal specificity of CD8\(^+\) T cells in a mouse model with genetically induced over-expression of PLP in oligodendrocytes. Here, we could show that the cytotoxic T lymphocytes, which had previously been shown to be pathogenic, were clonally expanded in the CNS of the transgenic mice. The amino acid sequences of the corresponding receptor chains were not identical, yet showed some similarities, which could mean that these clones recognize similar antigens (or epitopes of the same antigen). The knockout of PD-1 in this setting allowed for an analysis of the importance of tissue immune regulation. It became evident that the absence of PD-1 induced a larger number of clonal expansions in the CNS, hinting towards a reduced threshold for clonal disturbance and activation in these T cells. The expansions were, however, not pathogenic by themselves. Only in the presence of tissue damage and an antigenic stimulus (in our case the overexpression of PLP), the PD-1 limitation exacerbated the immune pathogenicity. Therefore, only in the presence of a “tissue damage signal”, the dyshomeostasis of T cells lacking PD-1 achieved high pathogenetic relevance. Finally, we investigated the pathogenetic role of CD8 T cells in Rasmussen encephalitis, a rare and chronic neurological disease mainly affecting children. The analysis of the T-cell receptor repertoire in Rasmussen encephalitis patients in the peripheral CD4\(^+\) and CD8\(^+\) T-cell compartments as well as the brain revealed the involvement of T cells in the pathogenicity of this disease. Many clonal expansions in the brain matched CD8\(^+\) T-cell expansions in the periphery on the sequence level. These putatively pathogenic clones could be visualized by immunohistochemistry in the brain and were found in close proximity to astrocytes and neurons. Additionally, the expanded clones could be found in the periphery of patients for at least one year.
Leonia cymosa (Violaceae) is a small tree from the under story of the Amazonian rain forest. I investigated the seed dispersal ecology of L. cymosa in plots of old growth terra firme forest located within the Cuyabeno Faunistic Reserve in north-eastern Ecuador. This species offered good conditions to examine the variation of traits of individual trees and the way they are linked with fruit removal from each tree. With this study I aimed to address the question whether frugivores exert selection pressures on fruits and the fruiting regime of fleshy fruited plants. The mean height of a fruiting L. cymosa was 6.6 m (range: 2 - 12.6 m). The median tree density was 11.8 trees per hectare. Trees grew in clusters consisting of different numbers of trees of different heights. L. cymosa flowered two times a year, in late February to March and in October. The respective fruiting seasons occurred in August/September and between March and May. The fruit pulp of L. cymosa contained the sugars fructose, glucose, and sucrose, the total soluble sugar being the first important nutritional compound of the fruit pulp. The second important compound was proteins. No lipids were found in the fruit pulp. The variation of nutritional quality of the fruits was high within trees. Nonetheless, significant differences were found among trees in all nutrient constituents studied. The maximum of ripe fruits produced per season by a single tree was 427. Median productivity of the trees was 45 ripe fruits throughout the fruiting season in 1999 (n=57) and 36 ripe fruits in 2000 (n=92). The maximum standing crop of fruits in a tree was 324 fruits (counted in 2000). Black mantle tamarins, Saguinus nigricollis (Callitrichidae), and squirrel monkeys, Saimiri sciureus (Cebidae), and possibly an unknown nocturnal frugivore consumed the fruits of L. cymosa at my study site. Green-rumped acouchis (Myoprocta pratti, Dasyproctidae) consumed fallen fruits and seeds underneath the trees. Black mantle tamarins and squirrel monkeys differed widely in their effectiveness as seed dispersers. Black mantle tamarins swallowed the seeds together with the fruit pulp and defecated intact seeds far away from the mother tree. Squirrel monkeys opened the fruits to suck and gnaw on the fruit pulp, and then dropped seeds to the forest floor below the tree crowns. Each of my study plots fell into the core home range of one group each of S. nigricollis and S. sciureus. Thus, the frugivore assemblage is small and disperser availability is limited for the individual tree of L. cymosa. In a sample of 6 trees of comparable and high fruit crop size, the total of ripe fruits removed from a tree throughout the whole fruiting season by the reliable seed disperser S. nigricollis was neither significantly correlated with the content of any of the nutrients measured in the fruit pulp (fructose, glucose, sucrose, total protein; pulp does not contain lipids), nor with total metabolisable energy, seed to pulp weight ratio, or water content of the fruit pulp. Feeding preferences for single sugars determined by other laboratory studies were not confirmed by this field study. The reliable seed disperser S. nigricollis does not seem to exert selective pressure on the nutrient content of the fruits of L. cymosa. Seasonal fruit crop size was the main predictor of all aspects of fruit removal by the effective disperser of L. cymosa, Saguinus nigricollis, as well as by the non-disperser, Saimiri sciureus. Trees with larger seasonal fruit crop size had a higher probability to have fruits removed by the disperser than those with small seasonal fruit crop sizes. They also had a higher number of fruits removed by the seed disperser. However, the proportion of fruits removed by the disperser decreased with increasing seasonal fruit crop size. In contrast, probability of fruit removal, the number of fruits removed, and the proportion of fruits removed by the non-disperser increased with increasing seasonal fruit crop sizes. The observed differences between disperser and non-disperser are due to differences in feeding capacity, group size and foraging behavior. Tamarins were less likely to harvest Leonia trees that were not or less completely covered by surrounding vegetation. This probably reflects a behavior to avoid predation by forest raptors. At high con-specific fruit abundance in the neighborhood, the proportion of fruits removed by tamarins was reduced. This suggests competition of trees for the disperser. My study revealed selection of the disperser on seasonal fruit crop size of L. cymosa. My results are consistent with the “fruit crop size hypothesis”. FCSH appears to constitute a valid framework also in the monkey-dispersed L. cymosa. My findings also show that factors beyond the tree’s control influenced fruit removal from Leonia trees. Disperser-mediated selection may be constrained (yet not impeded) by neighborhood conditions.
The taphonomic and paleoecologic aspects of the Upper Hauterivian to Lower Barremian Agua de la Mula Member of the Agrio Formation (Neuquén Basin, Argentina) were studied in the frame of the sequence stratigraphic paradigm. The Agua de la Mula Member, a ca. 600 m thick succession of highly cyclic marine sediments was surveyed at two localities. Detailed bed-by-bed sedimentologic, stratigraphic, ichnologic, taphonomic and paleoecologic data collection allowed a precise paleoenvironmental, stratigraphic, taphonomic and synecologic interpretation, in a controlled sequence stratigraphic framework. The main architectural stratigraphic component is the Starvation-Dilution Sequence, interpreted as a the effect of a sixth-order, Milankovitch precession-driven cycle. Dilution hemisequences are siliciclastic-dominated and show evidence of depth changes. Starvation hemisequences show a diverse variation of mixed carbonate-siliciclastic facies that is linked to sequence stratigraphy. Ammonite-based biostratigraphy was revised and new knowledge proposed. The stratigraphic framework was improved by combining biostratigraphy, sequence stratigraphy and event stratigraphy. Nine main sequences were described, linked to other stratigraphic markers and correlated with other sequence stratigraphic charts. Several orders of cyclicity were inferred. Third- and fourth-order sequences are the major sequences, not subordinated to higher hierarchies (lower order). Precession, obliquity, and short and long eccentricity cycles of the Milankovitch band are proposed. Among the different sequence stratigraphic models the transgression-regression model fits the majority of the sequences described in this work. The depositional-sequence model could be applied only to the first third-order sequence, in which the true sequence boundary is identifiable. Starvation-dilution sequences, however, are composed by to components that are not completely explained by those models. Starvation hemisequences developed in intermediate to deep settings record the transgressive phase as well as the earLy regressive one without visible stratigraphic boundaries. 112 samples with 22,572 individuals were grouped into fifteen fossil associations and one assemblage that reflect the interaction of different factors: age, position in major, medium and starvation dilution sequences and, linked to sequence stratigraphy, depth, oxygen availability, rate of terrigenous input, water agitation, and substrate conditions. Temporary possible reduction in oxygen content is inferred based on all sources of available evidence. Organic buildups are briefly described and their development interpreted in terms of the sequence stratigraphic framework. Vertical patterns of replacement of fossil associations are described and related to sequence stratigraphy. Five types of skeletal concentrations represent the diversity of coquinas decribed in this study. Type 1, 2, 4 and 5 correspond to starvation hemisequences deposited in progressively shallower settings, from basin to inner ramp. Type 3 is embedded into dilution hemisequences and inferred to be linked to shell bed type I of Kidwell (1985). Types 1 and 2 correspond to transgression, maximum flooding and early regression without distinction. Type 4A as well as Type 5 are interpreted as onlap shell beds (Kidwell 1991a) or early TST shell beds (Fürsich and Pandey 2003). Type 4B corresponds to the MFZ shell bed (Fürsich and Pandey 2003) or mid-cycle shell bed (Abbott 1997), while Type 4C to the downlap shell bed (Kidwell 1991a). Time-averaging of shell beds was assessed with precision as the time involved in the deposition of the starvation hemisequences could be inferred. All shell beds comprise within-habitat assemblages forming within a few thousand years, with little environmental condensation. The fossilization of the marine calcareous shells is modelled as a series of steps called windows: environmental, destructional, burial and diagenetic. The “diagenetic window” is the most relevant. Connected to this it is proposed that carbonate dissolution is the primary control on the development of shell beds, as has been proposed before (Fürsich 1982; Fürsich and Pandey 2003). The interpretative power resulting from combining several lines of evidence, e.g., facies analysis, sequence stratigraphy, biostratigraphy, trace fossil analysis, paleoecology and taphonomy, and unravelling their multiple relationships, are the most relevant conclusions of this study.
The spectroscopic properties of molecular aggregates have been investigated by means of quantum dynamical calculations. Thereby both linear and nonlinear spectroscopic techniques have been taken into account. For the simulation of absorption and CD-spectra, coupling effects were regarded as well as the relative orientation of the monomer units in order to determine the parameters by reproducing measured spectra. For a more detailled description, results from quantum chemical calculations have also been included. Furthermore, investigations on nonlinear spectroscopy of molecular dimers have been performed.
Mechanisms and adaptive significance of interspecific associations between tropical ant species
(2009)
Aggression between ants from different colonies or species is ubiquitous. Exceptions to this rule exist in the form of supercolonies (within a species) and interspecific associations (between species). Probably the most intimate interspecific association is the parabiosis, where two ant species live together in a common nest. They keep their brood separate but jointly use trails and often share food resources. Parabioses are restricted to few species pairings and occur in South American and Southeast Asian rainforests. While the South American parabioses have been studied, albeit poorly, almost nothing is known about their Southeast Asian counterparts. My PhD project focuses on Southeast Asian parabioses between the myrmicine Crematogaster modiglianii Emery 1900 and the considerably larger formicine Camponotus rufifemur Emery 1900. The two species frequently nest together in hollow trees in the tropical lowland rainforest of Borneo. The basic question of my PhD project is why these two species live together. I investigated both proximate and ultimate aspects of this question. For comparative purposes, I included studies on a trail-sharing association in the same habitat. On the proximate level, I investigated which mechanisms facilitate tolerance towards hetero-spe¬ci¬fic nestmates. Ants generally discriminate nestmates from non-nestmates via cuticular hydro¬carbons that function as colony recognition cues. I studied the specificity of nestmate recognition within and between the two parabiotic species. Using gas chromatography-mass spectrometry (GC-MS), I analyzed the cuticular substances in both ant species to find potential differences to non-parabiotic species, and to estimate the substance overlap among the two species. A high substance overlap would e.g. suggest that interspecific tolerance is caused by chemical mimicry. Finally, bioassays were conducted to evaluate the function of different cuticular compounds. Interspecific tolerance in the two parabiotic species was species-specific but not colony-specific. Ca. rufifemur tolerated all Cr. modiglianii individuals, even those from foreign colonies, but strongly attacked workers of other Crematogaster species. Cr. modiglianii, in turn, tolerated Ca. rufifemur workers of certain foreign colonies but attacked those of others. Chemical analyses revealed two sympatric, chemically distinct Ca. rufifemur varieties (‘red’ and ‘black’) with almost no hydrocarbon overlap. Cr. modiglianii only tolerated foreign Ca. rufifemur workers if they belonged to the same chemical variety as their own Ca. rufifemur partner. It also attacked other, non-parabiotic Camponotus species. Thus, reciprocal interspecific tolerance was restricted to the species Cr. modiglianii and Ca. rufifemur. Ca. rufifemur frequently tolerated conspecific non-nestmates of the same chemical variety. Minor workers were more often tolerated than majors, possibly because they possess two to three times lower hydrocarbon quantities per body surface than majors. In contrast, Cr. modiglianii nearly always attacked conspecific non-nestmates. Both species possessed hydrocarbons with considerably higher chain lengths than congeneric, non-parabiotic ant species. Long-chain hydrocarbons are less volatile than shorter ones and thus harder to perceive. They may thus considerably facilitate interspecific tolerance. Moreover, up to 98% of the cuticular hydrocarbons in Ca. rufifemur were methylbranched alkenes, which are highly unusual among insect cuticular hydrocarbons. Cr. modiglianii and Ca. rufifemur had almost no hydrocarbons in common, refuting chemical mimicry as a possible cause of interspecific tolerance. The only hydrocarbons common to both species were two methylbranched alkenes, which constituted 89% of the ‘red’ Ca. rufifemur hydrocarbon profile and also occurred in those Cr. modiglianii colonies that lived together with this Ca. rufifemur variety. Cr. modiglianii presumably acquired these two compounds from its red Ca. rufifemur partner. Cr. modiglianii was significantly less aggressive towards foreign Cr. modiglianii workers that were associated with the same Ca. rufifemur variety than to those associated with the respective other one. Hence, this species seemed to use recognition cues acquired from its parabiotic partner. Apart from hydrocarbons, both species possessed a set of hitherto unknown substances on their cuticle. The quantitative composition of the unknown compounds varied between parabiotic nests but was similar among the two species of a nest. They are probably produced in the Dufour glanf of Cr. modiglianii and transferred to their Ca. rufifemur partner. Possible transfer mechanisms include interspecific trophallaxis and ‘mounting behaviour’, where Cr. modiglianii climbed onto Ca. rufifemur workers without being displaced. Although the composition of the unknown compounds greatly varied between nests, they did not function as nestmate recognition cues since both species used hydrocarbons for nestmate recognition. However, the unknown compounds significantly reduced aggression in Ca. rufifemur. The ultimate, i.e. ecological and evolutionary aspects of my PhD research deal with potential costs and benefits that Cr. modiglianii and Ca. rufifemur may derive from the parabiotic association, their interactions with other species, and population genetic analyses. Additional studies on a trail-sharing association between three other ant species deal with two possible mechanisms that may cause or facilitate trail-sharing. Whether parabioses are parasitic, commensalistic, or mutualistic, is largely unknown and depends on the costs and benefits each party derives from the association. I therefore investigated food competition (as one of the most probable costs), differentiation of foraging niches (which can reduce competition), and several potential benefits of the parabiotic way of life. Besides, I studied interactions between the ant species and the hemiepiphyte Poikilospermum cordifolium. The foraging niches of the two species differed regarding foraging range, daily activity pattern, and food preferences. None of the two species aggressively displaced its partner species from baits. Thus, interference competition for food seemed to be low or absent. For both ant species, a number of benefits from the parabiotic lifestyle seem possible. They include interspecific trail-following, joint nest defence, provision of nest space by the partner species, food exchange via trophallaxis, and mutual brood care. If an ant species follows another species’ pheromone trails, it can reach food resources found by the other species. As shown by artificial extract trails, Ca. rufifemur workers indeed followed trails of Cr. modiglianii but not vice versa. Thus, Ca. rufifemur benefited from Cr. modiglianii’s knowledge on food sources (informational parasitism). In turn, Cr. modiglianii seemed to profit from nest defence by Ca. rufifemur. Ca. rufifemur majors are substantially larger than Cr. modiglianii workers. Although Cr. modiglianii often effectively defended the nest as well, it seemed likely that this species derived a benefit from its partner’s defensive abilities. In neotropical parabioses (ant-gardens), mutualistic epiphytes play an important role in providing nest space. The neotropical Camponotus benefits its Crematogaster partner by planting epiphyte seeds, for which Crematogaster is too small. Similarly, the Bornean parabioses often were inhabited by the hemiepiphyte Poikilospermum cordifolium (Barg.-Petr.) Merr (Cecropiaceae). P. cordifolium seedlings, saplings and sometimes larger indivi¬duals abundantly grew at the entrances of parabiotic nests. However, P. cordifolium provides no additional nest space and, apart from nutritive elaiosomes, perianths, and extrafloral nectar probably plays a less important role for the ants than the neotropical epiphytes. In conclusion, the parabiosis is probably beneficial to both species. The main benefits seem to be nest defence (for Cr. modiglianii) and interspecific trail-following (for Ca. rufifemur). However, Ca. rufifemur seems to be more dependent on its partner than vice versa. For both parabiotic species, I analyzed mitochondrial DNA of ants from different regions in Borneo. My data suggest that there are four genetically and chemically distinct, but closely related varieties of Camponotus rufifemur. In contrast, Crematogaster modiglianii showed high genetic differentiation between distant populations but was not differentiated into genetic or chemical varieties. This argues against variety-specific cocladogenesis between Cr. modiglianii and Ca. rufifemur, although a less specific coevolution of the two species is highly likely. In Bornean rainforests, trail-sharing associations of Polyrhachis (Polyrhachis) ypsilon Emery 1887 and Camponotus (Colobopsis) saundersi Emery 1889 are common and often include further species such as Dolichoderus cuspidatus Smith 1857. I investigated a trail-sharing association between these three species and studied two mechanisms that may cause or facilitate these associations: interspecific trail-following, i.e. workers following another species’ pheromone trail, and differential inter¬specific aggression. In trail-following assays, D. cuspidatus regularly followed extract trails of the other two species, thus probably parasitizing on their information on food sources. In contrast, only few P. ypsilon and Ca. saundersi workers followed hetero¬speci¬fic extract trails. Hence, the association between P. ypsilon and Ca. saundersi cannot be ex¬plained by foragers following heterospecific trails. In this case, trail-sharing may originate from few scout ants that do follow heterospecific pheromone trails and then lay their own trails. Interspecific aggression among P. ypsilon, Ca. saundersi and D. cuspidatus was strongly asymmetric, Ca. saundersi being submissive to the other two species. All three species discriminated between heterospecific workers from the same and a distant trail-sharing site. Thus, it seems likely that the species of a given trail-sharing site habituate to one another. Differential tolerance by dominant ant species may be mediated by selective habituation towards submissive species, and thereby influence the assembly of trail-sharing associations.
The widely used chemical acrylamide (AA) has been classified as a probable human carcinogen. This classification was based on positive results in rodent carcinogenicity studies as well as on a number of in vitro mutagenicity assays. In 2002, AA was discovered to be formed during the preparation of starch-containing foods. According to the latest FDA exposure assessment (2006), the average daily intake has been estimated from AA levels in foodstuffs and from nutritional habits to be around 0.4 µg/kg b.w. with a 90th percentile of 0.95 µg/kg b.w.. In children and adolescents however, the daily AA intake is about 1.5 times higher, due to lower body weight and differing consumption patterns. Apart from the diet, humans may be exposed to AA during the production or handling of monomeric AA, from AA residues in polyacrylamides, and from cigarette smoke. After oral administration, AA is readily absorbed and distributed throughout the organism. AA is metabolized to the reactive epoxide glycidamide (GA) via the CYP 450 isoenzyme CYP 2E1. Both, AA and GA are conjugated with glutathione. After enzymatic processing, the mercapturic acids N-Acetyl-S-(2-carbamoylethyl)-L-cysteine (AAMA) as well as the regioisomers N-Acetyl-S-(2-carbamoyl-2-hydroxyethyl)-L-cysteine (GAMA) and N-Acetyl-S-(1-carbamoyl-2-hydroxy-ethyl)-L-cysteine (iso-GAMA) are excreted with urine. An additional pathway for the metabolic conversion of GA is the epoxide hydrolase mediated hydrolysis to the diol compound glyceramide. Following administration of AA at doses exceeding the daily dietary intake by a factor of 1000 - 6000 to human subjects, a new urinary metabolite was found, which could be identified as the S-oxide of AAMA (AAMA-sulfoxide). In general, data from animal studies are used for risk assessment of (potential) human carcinogens. However, inter-species differences in toxicodynamics or toxicokinetics, e.g. in biotransformation may lead to under- or overestimation of human risk. The objective of this work was to establish a highly specific and sensitive analytical method to quantify the major urinary metabolites of AA. Other aims apart from measurements concerning the human background exposure were the evaluation of biotransformation and toxicokinetics of AA in humans and rats after oral administration of 13C3-AA. The obtained data was intended to help avoid linear extrapolation from animal models for future risk assessments of AA carcinogenicity.
Diverse roles of B cells in the pathophysiology of rheumatoid arthritis are now well established. B cells contribute to autoimmunity by producing autoantibodies, processing autoantigen and the production of different cytokines which are involved in the inflammatory cascade. Therefore approaches to target B lymphocytes directly or indirectly are developed for clinical practice to treat autoimmune diseases including rheumatoid arthritis. Transient B cell depletion by rituximab (anti-CD20 antibody) has gained prime importance in recent years. Meanwhile anti-CD20 mediated transient B cell depletion therapy is now used with clinical efficiency in the treatment of patients with rheumatoid arthritis. Rituximab induces noteworthy changes in the homeostasis of peripheral B cell subpopulations during the repletion phase with emerging immature B cells in peripheral blood followed by normalization of the naïve B cell pool and a longterm delay in memory B cell subsets in patients with rheumatoid arthritis. Particularly IgD+CD27+ memory B cells repopulate very slowly during B cell regeneration. In a prospective clinical study, our laboratory has shown that the overall number of memory B cells correlates well to the duration of clinical response to rituximab. Little is known about the particular molecular changes in the memory B cell repertoire after rituximab therapy. To better understand peripheral memory B cell subsets, we explored in detail the somatic mutational frequency and pattern of Ig-VH3 gene rearrangements by using a single B cell sorting technique followed by nested PCR before and up to 6 years after rituximab therapy in 18 RA patients. We compared rituximab inflicted dynamics of mutational acquisition to memory B cell repopulation in 4 healthy donors and 6 non RA patients undergoing high dose chemotherapy followed by autologous or allogeneic stem cell transplantation (SCT). Firstly we analyzed the peripheral composition of memory B cell subsets. The phenotypic analysis of peripheral pre-switch (IgD+CD27+) and post-switch (IgD-CD27+) memory B cells did not reveal any quantitative differences in RA patients prior to B cell depletion therapy compared to healthy donors. However extending those studies in directly analysing the B cell immunoglobulin receptor from individual B cells of RA patients and healthy controls brought interesting results. Pre-switched and post-switched memory B cells showed a highly significant difference in the amount of mutations/sequence. The population of IgD+CD27+ memory B cells is comprised of non-mutated, low and highly mutated (median= 9 mutations/ sequence) rearranged Ig receptors whereas the IgD-CD27+ memory B cell compartment shows quite uniformly highly mutated (median 18 mutations/ sequence) sequences indicating a significant difference between these two groups (mutational frequencies 3.83±0.19% vs. 7.1±0.53%; P=0.0001). Profound changes were noted in the re-emerging pre-switch memory B cells (IgD+/ CD27+) after transient B cell depletion with rituximab. These cells showed over a time period of 6 years after treatment with rituximab significantly delayed acquisition of mutations in Ig receptors on the single B cell level. One year after a single course of rituximab 84% of single repopulating IgD+/CD27+ B cells were unmutated and no highly mutated Ig-VH gene rearrangements were found(P=0.0001). Over time increasing numbers of mutations could be detected i-e 7.8% during 2nd year of regeneration (P=0.0001), 14% after 4 years (n=2). Nevertheless even 6 years after rituximab, VH mutations in IgD+ memory B cells were still reduced with 27% highly mutated sequences compared to 52% pre therapy(P=0.0001). Post-therapy analysis of CDR3 length of regenerated IgD+ memory B cells revealed increased CDR3 length which also correlates well with elevated number of non-mutated VH gene rearrangements observed during repletion phase. In comparison patients undergoing high dose chemotherapy followed by allogeneic stem cell transplantation repopulated IgD+ memory cells earlier with higher numbers of mutations in IgD+ memory B cells. One year after transplantation Ig receptors showed already 22% highly mutated and 42 % unmutated VH rearrangements. These findings indicated that anti-CD20 mediated B cell depletion seems not only to delay the production of pre-switch memory B cells but also significantly affects the acquisition of mutations in the IgD+ memory B cell pool. In contrary to the mutational pattern of IgD+ memory B cells after rituximab class switched memory B cells repopulate in the periphery with quantitatively normal mutations in their Ig receptors. Although the numeric replenishment of these recirculating class-switched memory B cells was also reduced after rituximab, we found no delay in quantitative acquisition of mutations also an increased proportion of IgA expressing B cells in this memory B cell subset was detected. Our data showed that post-therapy mutational targeting in RGYW/WRCY motifs were significantly increased as compared with that of pre-treatment (27% before rituximab vs. 43% after therapy, P=0.0003) indicating that affinity maturation may operate differently in class-switched memory B cells before and after B cell depletion. These results indicate a normal development process with an unimpaired mechanism of mutational acquisition in class-switched memory B cells. These data argue for different requirements to undergo somatic hypermutations in IgD+ memory B cells in comparison to class switched memory B cells. To conclude, our work has demonstrated for the first time a delayed acquisition of somatic hypermutations at single Ig receptor VH gene rearrangements of IgD+ memory B cells in comparison to class-switched memory B cells. These results demonstrate that IgD+ memory B cells are particularly susceptible to anti-CD20 treatment in patients with rheumatoid arthritis. In addition antigenic pressure and/or selection are substantially reduced by rituximab therapy which is basically not seen in the class-switched memory compartment. These data are in line with the hypothesis that IgD+ memory B cells have distinct requirements for activating their mutational machinery compared to class-switched memory B cells which recover normal mutations during regeneration phase. The results have implications in understanding the pathophysiology of memory B cell in rheumatoid arthritis and may be helpful in designing new targeted therapies.
In this thesis, soft x-ray absorption spectroscopy (XAS) and resonant inelastic x-ray scattering (RIXS) studies of the electronic structure of selected organic molecules and liquids were carried out. The first part focuses on the used experimental techniques and the development of the instrumentation necessary for these studies, namely a soft x-ray spectrometer, and a temperature-controlled flow-through liquid cell. The former was optimized by a special analytical ray tracing method developed exclusively for this purpose. Due to its high transmission, the spectrometer facilitates a novel experimental approach of recording comprehensive 'RIXS maps', which are 2-dimensional plots of x-ray scattering intensities as a function of both, excitation and emission photon energy. The liquid cell extends these possibilities to the study of liquids, especially the interaction of molecules in liquids and their chemical reactions under well-controlled conditions. Organic molecules have attracted considerable attention in the last decade. The intense research activities related to these materials have two main motivations: on the one hand, organic molecules have a technological application as building blocks of organic semiconductors, while, on the other hand, organic molecules are the functional elements in biological systems. In order to cost-effectively produce optimized organic electronic devices, a fundamental knowledge of the electronic properties of the organic molecules interface is necessary. Therefore, many studies of the electronic structure of potential candidates for organic electronics exist. Two of these candidates, namely C60 and well-ordered multilayers PTCDA on a Ag(111) surface are investigated in this thesis. For the study of C60 molecules, a comprehensive 'RIXS map' was recorded and analyzed. The RIXS map taken in only 25 minutes allows a quantitative analysis of energy losses, yielding for example the HOMO-LUMO distance. It also identifies a core-excitonic state and facilitates a quantitative comparison of its binding energy with that of valence excitons in C60. Furthermore, decay channel-selective partial fluorescence yield XAS spectra can be extracted from the RIXS map, yielding information on the population of the core-excitonic state as a function of excitation energy. As a second model system of organic molecules relevant for organic electronics, PTCDA was chosen. The complex electronic structure of the occupied states of a highly ordered, flat-lying PTCDA multilayer on a Ag(111) surface was investigated by symmetry-resolved resonant x-ray emission spectroscopy. The rapidly occurring beam damage effects were characterized on the basis of irradiation-time dependent series of C and O x-ray emission spectra. Upon varying the excitation energy and emission geometry, atom- and symmetry-specific carbon K emission spectra with negligible beam damage effects were obtained that allow to distinguish between electronic states with sigma and pi symmetry. A density functional theory calculation of the PTCDA molecule reproduces the energy positions of the most prominent emission features remarkably well. In addition, the energy positions of the sigma and pi emissions agree well with the calculated energies of the respective orbitals. In order to shed light on the second aspect of organic molecules, namely their role in biological systems, first a detailed investigation of the electronic structure and proton dynamics of liquid water as the medium of most chemical and biochemical reactions was carried out. Therefore, a comprehensive oxygen K RIXS map of liquid water was recorded and analyzed in great detail. A temperature-dependent comparison with XAS and RIXS data of D2O, NaOH, and NaOD leads to the conclusion, that ultra-fast dissociation takes place in liquid water on the timescale of the oxygen 1s core hole lifetime, resulting in a characteristic spectral contribution in the RIXS spectra. The dissociation is promoted by intact hydrogen bonds with neighboring molecules. In consequence, the rate of dissociation directly depends on the initial hydrogen bond configuration. In the next step towards biologically relevant systems, the nitrogen K edges of the amino acids glycine and histidine were investigated in powderous form as well as in their native environment, namely in aqueous solution. X-ray absorption and emission spectra of the aqueous solutions were analyzed at pH-values of 6 and for glycine also at pH 12 and compared to the spectra of powders. A pH-value of 12 causes deprotonation of the amino group, leading to significant changes in the nitrogen spectra as compared to pH 6. The results from these four examples demonstrate that a wealth of novel information can be obtained by using the new experimental tools developed in this thesis, namely a highly sensitive x-ray spectrometer and a flow-through liquid cell.
An increase in cytosolic Ca2+ levels ([Ca2+]i) is a key event that occurs downstream of many signaling cascades in response to an external stimulus and regulates a wide range of cellular processes, including platelet activation. Eukaryotic cells increase their basal [Ca2+]i allowing extracellular Ca2+ influx into the cell, which involves different mechanisms. Store-operated Ca2+ entry (SOCE) is considered the main mechanism of extracellular Ca2+ influx in electrically non-excitable cells and platelets, and comprises an initial Ca2+ depletion from intracellular Ca2+ stores prior to activation of extracellular Ca2+ influx. Although the close relation between Ca2+ release from intracellular stores and extracellular Ca2+ influx was clear, the nature of the signal that linked both events remained elusive until 2005, when Stromal Interaction Molecule 1 (STIM1) was identified as an endoplasmic reticulum (ER) Ca2+ sensor essential for inositol (1,4,5)-trisphosphate (IP3)-mediated SOCE in vitro. However, the function of its homologue STIM2 in Ca2+ homeostasis was in general unknown. Therefore, mice lacking STIM2 (Stim2-/-) were generated in this work to study initially STIM2 function in platelets and in cells of the immune system. Stim2-/- mice developed normally in size and weight to adulthood and were fertile. However, for unknown reasons, they started to die spontaneously at the age of 8 weeks. Unexpectedly, Stim2-/- mice did not show relevant differences in platelets, revealing that STIM2 function is not essential in these cells. However, STIM2 seems to be involved in mammary gland development during pregnancy and is essential for mammary gland function during lactation. CD4+ T cells lacking STIM2 showed decreased SOCE. Our data suggest that STIM2 has a very specific function in the immune system and is involved in Experimental Autoimmune Encephalomyelitis (EAE) at early stages of the disease progression. Stim2-/- neurons were also defective in SOCE. Surprisingly, our results evidenced that STIM2 participates in mechanisms of neuronal damage after ischemic events in brain. This is the first time that the involvement of SOCE in ischemic neuronal damage has been reported. This finding may serve as a basis for the development of novel neuroprotective agents for the treatment of ischemic stroke, and possibly other neurodegenerative disorders in which disturbances in cellular Ca2+ homeostasis are considered a major pathophysiological component.
Macromolecular complexes, also termed molecular machines, facilitate a large spectrum of biological reactions and tasks crucial to the survival of cells. These complexes are composed of either protein only, or proteins bound to nucleic acids (DNA or RNA). Prominent examples for each class are the proteosome, the nucleosome and the ribosome. How such units are assembled within the context of a living cell is a central question in molecular biology. Earlier studies had indicated that even very large complexes such as ribosomes could be reconstituted from purified constituents in vitro. The structural information required for the formation of macromolecular complexes, hence, lies within the subunits itself and, thus, allow for self- assembly. However, increasing evidence suggests that in vivo many macromolecular complexes do not form spontaneously but require assisting factors (“assembly chaperones”) for their maturation. In this thesis the assembly of RNA-protein (RNP) complexes has been studied by a combination of biochemical and structural approaches. A resourceful model system to study this process is the biogenesis pathway of the uridine-rich small nuclear ribonucleoproteins (U snRNPs) of the spliceosome. This molecular machine catalyzes pre-mRNA splicing, i.e. the removal of non-coding introns and the joining of coding exons to functional mRNA. The composition and architecture of U snRNPs is well defined, also, the nucleo-cytoplasmic transport events enabling the formation of these particles in vivo have been analyzed in some detail. Furthermore, recent studies suggest that the formation of U snRNPs in vivo is mediated by an elaborate assembly machinery consisting of protein arginine methyltransferase (PRMT5)- and survival motor neuron (SMN)-complexes. The elucidation of the reaction mechanism of cellular U snRNP assembly would serve as a paradigm for our understanding of how RNA-protein complexes are formed in the cellular environment. The following key findings were obtained as part of this study: 1) Efforts were made to establish a full inventory of the subunits of the SMN-complex. This was achieved by the biochemical definition and characterization of an atypical component of this complex, the unrip protein. This protein is associated with the SMN-complex exclusively in the cytoplasm and influences its subcellular localization. 2) With a full inventory of the components in hand, the architecture of the SMN-complex was defined on the basis of an interaction map of all subunits. This study elucidated that the proteins SMN, Gemin7 and Gemin8 form a backbone, onto which the remaining subunits adhere in a modular manner. 3) The two studies mentioned above formed the basis to elucidate the reaction mechanism of cellular U snRNP assembly. Initially, an early phase in the SMN-assisted formation of U snRNPs was analyzed. Two subunits of the U7 snRNP (LSm10 and 11) were found to interact with the PRMT5-complex, without being methylated. This report suggests that the stimulatory role of the PRMT5-complex is independent of its methylation activity. 4) Key reaction intermediates in U snRNP assembly were found and characterized by a combination of biochemistry and structural studies. Initially, a precursor to U snRNPs with a sedimentation coefficient of 6S is formed by the pICln subunit of the PRMT5-complex and Sm proteins. This intermediate was shown to constitute a kinetic trap in the U snRNP assembly reaction. Progression towards the assembled U snRNP depends on the activity of the SMN-complex, which acts as a catalyst. The formation of U snRNPs is shown to be structurally similar to the way clamps are deposited onto DNA to tether poorly processive polymerases. 5) The human SMN-complex is composed of several subunits. However, it is unknown whether all subunits of this entity are essential for U snRNP assembly. A combination of bioinformatics and biochemistry was applied to tackle this question. By mining databases containing whole-genome assemblies, the SMN-Gemin2 heterodimer is recognized as the most ancestral form of the SMN-complex. Biochemical purification of the Drosophila melanogaster SMN-complex reveals that this complex is composed of the same two subunits. Furthermore, evidence is provided that the SMN-Gemin2 heterodimer is necessary and sufficient to promote faithful U snRNP assembly. Future studies will adress further details in the reaction mechanism of cellular U snRNP assembly. The results obtained in this thesis suggest that the SMN and Gemin2 subunits are sufficient to promote U snRNP formation. What then is the function of the remaining subunits of the SMN-complex? The reconstitution schemes established in this thesis will be instrumental to address this question. Furthermore, additional mechanistic insights into the U snRNP assembly reaction will require the elucidation of structures of the assembly machinery trapped at various states. The prerequisite for these structural studies, the capability to generate homogenous complexes in sufficient amounts, has been accomplished in this thesis.
Tumors of the hematopoietic and lymphoid system are classified into Hodgkin lymphoma and non-Hodgkin lymphoma (NHL). Approximately 80% of non-Hodgkin lymphomas (NHL) are B-cell lymphomas (B-NHL) and the remainder include T-cell and NK-cell lymphomas as well as immunodeficiency-associated lymphoproliferative disorders. The presence of genetic alterations such as translocations involving the immunoglobulin (Ig) receptor loci in B-NHL, e.g. the translocation t(14;18)(q32.33;q21.3) in follicular lymphoma (FL), are of great value for the classification and of importance in the pathogenesis of these neoplasms. In analogy to the Ig receptor genes in B-NHL, the T-cell receptor (TCR) gene loci are targeted by chromosomal breaks in approximately 30% of precursor T-cell lymphoblastic leukemias/lymphomas involving various translocation or inversion partners. Most of these events result in the overexpression of an oncogene by juxtaposing it to the regulatory sequences of the TCR genes. However, the pathogenesis of mature T-cell NHL (T-NHL) and the underlying molecular mechanisms are only poorly understood so far. To determine the exact frequency of breakpoints occurring in the TCR loci of 227 mature T-NHL cases, we designed fluorescence in situ hybridization (FISH) assays for the TCR loci that are applicable for large scale analysis of formalin fixed and paraffin embedded (FFPE) lymphoma specimens in a tissue microarray format. This approach revealed only two mature T-NHL cases with a chromosomal breakpoint in one of the TCR loci making the rearrangement of TCR loci a very rare event in these neoplasms that occurs in less than 1% of cases.FL is the second most frequent type of B-NHL that can show predominantly follicular, combined follicular and diffuse, or predominantly diffuse growth patterns. The characteristic genetic hallmark of FL is the translocation t(14;18)that occurs in approximately 90% of cases and leads to a deregulated expression of the anti-apoptotic BCL2 proto-oncogene. FL has yet been a subject of many studies deciphering morphological, clinical and molecular features of this entity. However, only little information exists about cases lacking this translocation. In this thesis we divided 184 FL cases by polymerase chain reaction (PCR) and by FISH assays into FL cases with and without t(14;18) and investigated their respective gene expression profiles and copy number alterations. For FISH analysis we followed the refined conditions established for the T-NHL study. The only genetic alterations that differed significantly by comparative genomic hybridization (CGH) analysis between FL cases with and without t(14;18) were frequent gains or amplifications in 18q11-q21 in 32% of t(14;18)-positive and 0% of t(14;18)-negative cases. Gene expression profiling and geneset enrichment analysis (GSEA) revealed an enrichment of germinal center B-cell (GCB) signatures in t(14;18)-positive cases whereas an enrichment of activated B-cell (ABC) like, NFkB-, proliferation-, cell cycle-, interferon and bystander cell signatures were observed in t(14;18)-negative cases. A validation approach by immunohistochemistry (IHC) on an independent test set of FL cases (n=84) revealed a more frequent expression of the germinal center (GC) marker CD10/MME in cases with t(14;18) and a higher expression of the post GC marker IRF4/MUM1, the proliferation marker Ki67 and the cytotoxic T-cell marker GZMB in cases without t(14;18). Although these results may suggest a post-GCB phenotype for translocation t(14;18)-negative cases, ongoing somatic hypermutations of the immunoglobulin heavy chain genes in these cases rather point to a late GC stage of B-cell differentiation in FL without t(14;18). In an independent study with 35 predominantly diffuse FL cases, it was furthermore possible to define another subset of t(14;18)-negative FL characterized by a chromosomal deletion (del) in 1p36 and distinct morphological and clinical features by IHC, classical chromosome banding, FISH and gene expression profiling. The gene expression profiles of predominantly diffuse FL cases fell into the spectrum of FL. However, by GSEA they showed a significant enrichment of T-cell, NK-cell- and two dendritic-cell subset signatures, whereas a significant enrichment of GCB cell-, proliferation-, cell cycle- and B-cell signatures was observed in a control group of “classic” FL cases. Remarkably, patients with diffuse FL frequently presented with low clinical stage and large, but localized inguinal tumors. In conclusion, our results suggest that t(14;18)-negative FL are part of the spectrum of FL in general, but nevertheless show distinct molecular and clinical features. In particular, predominantly diffuse FL with (del)1p36, low clinical stage and large but localized inguinal tumors may represent a distinct t(14;18)-negative FL subtype.
Several lines of evidence implicate a dysregulation of tryptophan hydroxylase (TPH)-dependent serotonin (5-HT) synthesis in emotions and stress and point to their potential relevance to the etiology and pathogenesis of various neuropsychiatric disorders. However, the differential expression pattern of the two isoforms TPH1 and TPH2 which encode two forms of the rate-limiting enzyme of 5-HT synthesis is controversial. Here, a comprehensive spatio-temporal analysis clarifies TPH1 and TPH2 expression during pre- and postnatal development of the mouse brain and in adult human brain as well as in peripheral organs including the pineal gland. Four different methods (real time PCR, in situ hybridization, immunohistochemistry and Western blot analysis) were performed to systematically control for tissue-, species- and isoform-specific expression on both the pre- and posttranslational level. TPH2 expression was consistently detected in the raphe nuclei, as well as in fibres in the deep pineal gland and in the gastrointestinal tract. Although TPH1 expression was found in these peripheral tissues, no significant TPH1 expression was detected in the brain, neither during murine development, nor in mouse and human adult brain. Also under conditions like stress and clearing the tissue from blood cells, no changes in expression levels were detectable. Furthermore, the reuptake of 5-HT into the presynaptic neuron by the serotonin transporter (SERT) is the major mechanism terminating the neurotransmitter signal. Thus, mice with a deletion in the Sert gene (Sert KO mice) provide an adequate model for human affective disorders to study lifelong modified 5-HT homeostasis in interaction with stressful life events. To further explore the role of TPH isoforms, Tph1 and Tph2 expression was studied in the raphe nuclei of Sert deficient mice under normal conditions as well as following exposure to acute immobilization stress. Interestingly, no statistically significant changes in expression were detected. Moreover, in comparison to Tph2, no relevant Tph1 expression was detected in the brain independent from genotype, gender and treatment confirming expression in data from native animals. Raphe neurons of a brain-specific Tph2 conditional knockout (cKO) model were completely devoid of Tph2-positive neurons and consequently 5-HT in the brain, with no compensatory activation of Tph1 expression. In addition, a time-specific Tph2 inducible (i) KO mouse provides a brain-specific knockdown model during adult life, resulting in a highly reduced number of Tph2-positive cells and 5-HT in the brain. Intriguingly, expression studies detected no obvious alteration in expression of 5-HT system-associated genes in these brain-specific Tph2 knockout and knockdown models. The findings on the one hand confirm the specificity of Tph2 in brain 5-HT synthesis across the lifespan and on the other hand indicate that neither developmental nor adult Tph2-dependent 5-HT synthesis is required for normal formation of the serotonergic system, although Tph1 does not compensate for the lack of 5-HT in the brain of Tph2 KO models. A further aim of this thesis was to investigate the expression of the neuropeptide oxytocin, which is primarily produced in the hypothalamus and released for instance in response to stimulation of 5-HT and selective serotonin reuptake inhibitors (SSRIs). Oxytocin acts as a neuromodulator within the central nervous system (CNS) and is critically involved in mediating pain modulation, anxiolytic-like effects and decrease of stress response, thereby reducing the risk for emotional disorders. In this study, the expression levels of oxytocin in different brain regions of interest (cortex, hippocampus, amygdala, hypothalamus and raphe nuclei) from female and male wildtype (WT) and Sert KO mice with or without exposure to acute immobilization stress were investigated. Results showed significantly higher expression levels of oxytocin in brain regions which are involved in the regulation of emotional stimuli (amygdala and hippocampus) of stressed male WT mice, whereas male Sert KO as well as female WT and Sert KO mice lack these stress-induced changes. These findings are in accordance with the hypothesis of oxytocin being necessary for protection against stress, depressive mood and anxiety but suggest gender-dependent differences. The lack of altered oxytocin expression in Sert KO mice also indicates a modulation of the oxytocin response by the serotonergic system and provides novel research perspectives with respect to altered response of Sert KO mice to stress and anxiety inducing stimuli.
It is well-known that a multivariate extreme value distribution can be represented via the D-Norm. However not every norm yields a D-Norm. In this thesis a necessary and sufficient condition is given for a norm to define an extreme value distribution. Applications of this theorem includes a new proof for the bivariate case, the Pickands dependence function and the nested logistic model. Furthermore the GPD-Flow is introduced and first insights were given such that if it converges it converges against the copula of complete dependence.
A new class of optimization problems name 'mathematical programs with vanishing constraints (MPVCs)' is considered. MPVCs are on the one hand very challenging from a theoretical viewpoint, since standard constraint qualifications such as LICQ, MFCQ, or ACQ are most often violated, and hence, the Karush-Kuhn-Tucker conditions do not provide necessary optimality conditions off-hand. Thus, new CQs and the corresponding optimality conditions are investigated. On the other hand, MPVCs have important applications, e.g., in the field of topology optimization. Therefore, numerical algorithms for the solution of MPVCs are designed, investigated and tested for certain problems from truss-topology-optimization.
The aim of the current work was to enhance the understanding of the relationship between goals and the self. More specifically, I wanted to achieve three things. First, I developed an implicit measure of self-activation (SA) based on response latencies to avoid the problems of traditional measures of self-activation (i.e., demand effects, self-presentation concerns). Therefore, two studies were conducted in which increased self-activation, induced by classic self-manipulations, was measured with a newly developed picture task. Thereby it was assumed that individuals would react faster to photographs of themselves when the self was activated than when it was not. Second, I aimed to demonstrate that there exists a close connection between personal goals and the self. Despite being inherent in several theories, this assumption has never been tested directly before. It was hypothesized that thinking about personal goals should activate the self, resulting in faster reactions in the newly developed measure of SA, i.e., quicker responses to the self-pictures. Third, it was investigated whether goals and the self are linked in a bidirectional fashion; according to the reported findings, it seems to be functional for individuals’ self-regulation and goal pursuit to develop such a link. To provide evidence for the bidirectionality of the relationship, it was hypothesized that in conditions of high SA, it should be more likely personal evaluations to be construed as goals; this goal activation should result in higher accessibility of goal-related knowledge, stronger approach motivational tendencies towards goal-related targets, and more goal-directed behavior. The obtained results endorse the applicability of the picture task as implicit method to measure increased SA and also corroborate the core hypothesis, namely that personal goals and the self are inherently connected and that they are linked in a bidirectional fashion.
Charcot-Marie-Tooth disease (CMT) is a cohort of human hereditary disorders of the peripheral nervous system (PNS) which exhibit symptoms like sensory dysfunction, muscle weakness and gait disturbances. Different mutations are described as causation for this neuropathy, such as a duplication of chromosome 17 comprising the gene for the peripheral myelin protein-22 (PMP22). Based on different animal models former studies identified immune cells, i.e. macrophages and T-lymphocytes, as crucial mediators of pathology in these neuropathies. In this study, PMP22-overexpressing mice (PMP22tg, C61), serving as a model for a specific type of CMT – CMT1A – were crossbred with immune-deficient mutant mice to examine the impact of the immune system on nerve pathology. Crossbreeding of PMP22tg mice with recombination activating gene-1 (RAG-1) deficient mice, lacking mature T- and B-lymphocytes, caused no striking alterations of pathogenesis in peripheral nerves of mutant mice. In contrast, crossbreeding of PMP22tg myelin mutants with mice deficient in the chemokine monocyte chemoattractant protein-1 (MCP-1, CCL2) caused an amelioration of the demyelinating phenotype of peripheral nerves when MCP-1 was either reduced or completely absent. Furthermore, functional investigations, i.e. neurographic recordings and examinations of the grip strength of the extremities, revealed an amelioration in PMP22tg/MCP-1-/- mice in regard to a symptomatic improvement in the compound action muscle potential (CMAP) and stronger grip strength of the hindlimbs. Interestingly, peripheral nerves of PMP22tg mice showed an irregular distribution of potassium channels in presence of MCP-1, whereas the absence of MCP-1 in the myelin mutants rescued the ion channel distribution and resulted in a more wild type-like phenotype. Having shown the impact of MCP-1 as an important mediator of nerve pathology in PMP22/MCP-1 double mutants, the regulation of this chemokine became an important target for potential treatment strategies. We found that the signaling cascade MEK1/2/ERK1/2 was more strongly activated in peripheral nerves of PMP22tg mice compared to nerves of wild type mice. This activation corresponded to an increase in MCP-1 mRNA expression in peripheral nerves at the same age. Furthermore, a MEK1/2-inhibitor was used in vivo to confirm the regulation of MCP-1 by the MEK1/2/ERK1/2 pathway. After a treatment period of three weeks, a clear reduction of ERK1/2-phosphorylation as well as a reduction of MCP-1 mRNA expression was observed, accompanied by a decline in macrophage number in peripheral nerves of PMP22tg mice. These observations suggest that the expression of MCP-1 is crucial for the neuropathological progression in a mouse model for CMT1A. Therefore, this chemokine could provide a basis for a putative treatment strategy of inherited neuropathies.
Evaluation of 1H-NMR and GC/MS-based metabonomics for the assessment of liver and kidney toxicity
(2009)
For the assessment of metabonomics techniques for the early, non-invasive detection of toxicity, the nephrotoxins gentamicin (s.c. administration of 0, 60 and 120 mg/kg bw 2x daily for 8 days), ochratoxin A (p.o. administration of 0, 21, 70 and 210 µg/kg bw 5 days/week for 90 days) and aristolochic acid (p.o. administration of 0, 0.1, 1.0 and 10 mg/kg bw for 12 days) were administered to rats and urine samples were analyzed with 1H-NMR and GC/MS. Urine samples from the InnoMed PredTox project were analyzed as well, thereby focusing on 1H-NMR analysis and bile duct necrosis as histopathological endpoint. 1H-NMR analysis used water supression with the following protocol: 1 M phosphate buffer, D2O as shift lock reagent, D4-trimethylsilylpropionic acid as chemical shift reference, noesygppr1d pulse sequence (Bruker). For multivariate data analysis, spectral intensity was binned into 0.04 ppm wide bins. GC/MS analysis of urine was carried out after protein precipitation with methanol, drying, derivatization with methoxyamine hydrochloride in pyridine and with methyl(trimethylsilyl)trifluoroacetamide on a DB5-MS column using EI ionization. The chromatograms were prepared for multivariate data analysis using the R-program based peak picking and alignment software XCMS version 2.4.0. Principal component analysis (PCA) to detect and visualize time-point and dose-dependent differences between treated animals and controls and orthogonal projection to latent structures discriminant analysis (OPLS-DA) for identification of potential molecular markers of toxicity was carried out using SIMCA P+ 11.5 1H-NMR-based markers were identified and quantified with the Chenomx NMR Suite, GC/MS based markers were identified using the NIST Mass Spectral Database and by co-elution with authentic reference standards. PCA of urinary metabolite profiles was able to differentiate treated animals from controls at the same time as histopathology. An advantage over classical clinical chemistry parameters regarding sensitivity could be observed in some cases. Metabonomic analysis with GC/MS and 1H-NMR revealed alterations in the urinary profile of treated animals 1 day after start of treatment with gentamicin, correlating with changes in clinical chemistry parameters and histopathology. Decreased urinary excretion of citrate, 2-oxoglutarate, hippurate, trigonelline and 3-indoxylsulfate increased excretion of 5-oxoproline, lactate, alanine and glucose were observed. Ochratoxin A treatment caused decreased excretion of citrate, 2-oxoglutarate and hippurate and and increased excretion of glucose, myo-inositol, N,N-dimethylglycine, glycine, alanine and lactate as early as 2 weeks after start of treatment with 210µg OTA/kg bw, correlating with changes in clinical chemistry parameters and histopathology. Integration of histopathology scores increased confidence in the molecular markers discovered. Aristolochic acid treatment resulted in decreased urinary excretion of citrate, 2-oxoglutarate, hippurate and creatinine as well as increased excretion of 5-oxoproline, N,N-dimethylglycine, pseudouridine and uric acid. No alterations in clinical chemistry parameters or histopathology were noted.Decreased excretion of hippurate indicates alterations in the gut microflora, an effect that is expected as pharmacological action of the aminoglycoside antibiotic gentamicin and that can also be explained by the p.o. administration of xenobiotica. Decreased Krebs cycle intermediates (citrate and 2-oxoglutarate) and increased lactate is associated with altered energy metabolism. Increased pseudouridine excretion is associated with cell proliferation and was observed with aristolochic acid and ochratoxin A, for which proliferative processes were observed with histopathology. 5-oxoproline and N,N-dimethylglycine can be associated with oxidative stress. Glucose, a marker of renal damage in clinical chemistry, was observed for all three nephrotoxins studied. Single study analysis with PCA of GC/MS chromatograms and 1H-NMR spectra of urine from 3 studies conducted within the InnoMed PredTox project showing bile duct necrosis revealed alterations in urinary profiles with the onset of changes in clinical chemistry and histopathology. Alterations were mainly decreased Krebs cycle intermediates and changes in the aromatic gut flora metabolites, an effect that may result as a secondary effect from altered bile flow. In conclusion, metabonomics techniques are able to detect toxic lesions at the same time as histopathology and clinical chemistry. The metabolites found to be altered are common to most toxicities and are not organ-specific. A mechanistic link to the observed toxicity has to be established in order to avoid confounders such as body weight loss, pharmacological effects etc. For pattern recognition purposes, large databases are necessary.
This work deals with the sintering of multi-material composites. It aims at the establishment of an alternative to the existing complex models for sintering. The development of the associated experimental procedure is also included in this work. The developed material model must be able to predict (i) the sintering kinetics and (ii) the viscous moduli of a material. An experimental approach with free sintering and hot-forging measurements is favoured in this work. The prediction of the sintering kinetics is addressed with the construction of a map of sintering kinetics data: the Master Sintering Diagram (MSD). The MSD is based on a generalized equation for solid-state diffusion, thus is suitable for any thermal activated diffusion. The MSD allows the prediction of sintering kinetics for a large range of temperatures and external loads. A novel approach to the determination of the viscous moduli is developed in this work: the cyclic unloading method. It is a hot-forging measurement (sintering under uniaxial compression) where the applied load is released for short periods. The measurements are carried out with continuous heating, so that the viscous moduli are determined over large ranges of temperatures and densities. The advantage of this method is the measurement of the viscous moduli in anisotropic microstructures. The material model is validated in two steps. Firstly, the predictions of sintering kinetics with the MSD are compared with experimental results: changes of thermal profile and changes of load are predicted with a maximum deviation of 10%. Secondly, the experimentally determined viscous moduli are used for the prediction of a bi-layer curvature using models for warpage from literature. The prediction is qualitatively good for a maximum deviation of 27%. The study of a sintering glass-ceramic tape on a rigid substrate is presented. It shows that this co-sintering problem can be qualitatively investigated with requirement of the material model. The formation of anisotropy intrinsic to the hot-forging experiments is also reported in this work. It appears to be a important point to address in the future for a better understanding of the cosintering.
Mediators of Social Anxiety - External Social Threat-Cues vs. Self-Related Negative Cognitions
(2009)
Based on a review of models and empirical findings a working model is proposed, suggesting that self-related negative cognitions and biased processing of external social threat-cues are mediators of social anxiety. Hypotheses derived from this model were tested in three experiments. The first experiment examined whether levels of trait social anxiousness predicted fearful responding to external social threat-cues (angry vs. neutral and happy facial expressions) during social evaluation. Higher trait social anxiousness predisposes to an inward focus on one’s fear reaction to social threat. Using this strategy was expected to enhance fearful responding to angry facial expressions. A strategy of identifying with angry faces was expected to counteract fearful responding, but was expected to fail more often with increasing levels of trait social anxiousness. To examine these hypotheses, affective modulation of the startle eye-blink was assessed in forty-four undergraduate students. This measure served as a probe into the activation of brain structures involved in the automatic evaluation of environmental threat-cues. Trait and state anxiety as well as explicit emotional responding to the stimuli were assessed with questionnaires and ratings. Processing angry faces potentiated startle amplitudes as expected. Low arousal induced by the stimuli was a probable reason, why startle potentiation to happy faces emerged instead of attenuation. Trait social anxiousness and the cognitive strategies did not influence these effects. Yet, increased trait social anxiousness predicted decreased startle latency, indicating motor hyper-responsivity, which is part of the clinical representation of social anxiety disorder (SAD). Processing facial expressions and identifying with them disrupted this association. Previous studies support that similar strategies may enhance treatment of SAD. Individuals with SAD were expected to respond with increased arousal to external social threat-cues. Therefore, the second experiment examined whether nine individuals with SAD showed attentional (prepulse inhibition, PPI) or affective startle modulation to angry as compared to neutral and happy facial expressions. Corrugator supercilii activity was assessed as a behavioral indicator for effects of facial expressions. The remaining setup resembled the first experiment. Facial expressions did not modulate the startle reflex, but corrugator supercilii activity was sensitive to facial valence. However, the effects were not related to trait social anxiousness. Apparently, angry facial expressions do not act as phobic stimuli for individuals with SAD. The third experiment examined whether focusing on self-related negative cognitions or biased processing of external social threat-cues mediates relationships between trait social anxiety and anxious responding in a socially challenging situation. Inducing self-related negative cognitions vs. relaxation was expected to reveal a functional dependency on the supposed mediation in a multivariate assessment of criteria of the working model. Within this design, the impact of external social threat-cues (facial expressions and emotional words) was compared to control stimuli and context effects, using the startle paradigm. The findings provide first evidence for full statistical mediation of the associations between trait social anxiety and self-reported anxiety as well as parasympathetic withdrawal by self-related negative cognitions, when thirty-six undergraduate students anticipated public speaking. Apprehensive arousal, as indicated by increased skin conductance levels and heart rate, was present in all participants. Observer ratings of behavior during public speaking matched the self-rated quality of the performance. None of these measures were correlated with trait social anxiousness. Startle amplitude correlated with state and trait social anxiety, but was no mediator. Finally, there was no affective modulation of the startle amplitude by external social threat-cues. These studies advance both our current understanding of the factors that mediate social anxiety responses to situations and our knowledge of the physiological and anatomical mechanisms involved in social anxiety. Based on these findings a revised version of the working model on mediators of social anxiety is proposed in the hope it may aid further research for the ultimate goal of developing an empirically validated functional anatomical model of social anxiety.
The Three-Site Higgsless Model is alternative implementation of electroweak symmetry breaking which in the Standard Model is mediated by the Higgs mechanism. The main features of this model is the appearance of two new heavy vector resonances W' and Z' with masses > 380 GeV as well as a set of new heavy fermions (> 1.8 TeV). In this model, unitarity of the amplitudes for the scattering of longitudinal gauge bosons is maintained by the exchange of the W' and Z' up to a scale of ~2 TeV. Consistency with the electroweak precision observables from the LEP / LEP-II experiments implies an exceedingly small coupling of the new vector bosons to the light Standard Model fermions (about 3% of the isospin gauge coupling). In this thesis, the LHC phenomenology of this scenario is explored. To this end, we calculated the couplings and widths of all the new particles and implemented the model into the Monte-Carlo eventgenerator WHIZARD / O'Mega. With this implementation, we simulated the parton-level production of the gauge boson and fermion partners in different channels possibly suitable for their discovery at the LHC. The results are presented together with an introduction to the model and a discussion of its properties. We find that, while the fermiophobic nature of the new heavy gauge bosons does make them intrinsically difficult to observe at a collider, the LHC should be able to establish the existence of both resonances and even give some hints about the properties of their couplings which would be a vital test of the consistency of such a scenario. For the heavy fermions, we find that their large mass is accompanied by relative widths of more than $10\%$, making them ill-suited for a direct discovery at the LHC. Nevertheless, our simulations reveal that there is a part of parameter space where, given enough time, patience and a good understanding of detector and backgrounds, a direct discovery might be possible.
Prion diseases such as scrapie in sheep, bovine spongiform encephalopathy (BSE) in cattle or Creutzfeldt-Jakob disease (CJD) in humans are fatal neurodegenerative disorders characterized by brain lesions and the accumulation of a disease-associated protein, designated PrPSc. How prions proceed to damage neurons and whether all or only subsets of neurons have to be affected for the onset of the clinical disease is still elusive. The manifestation of clinical prion disease is characterized by motor dysfunctions, dementia and death. Furthermore loss of motor neurons (MN) in the spinal cord is a constant finding in different mouse models of prion disease, suggesting that MN are vulnerable cells for triggering the onset of clinical symptoms. To determine whether the protection of MN against prion induced dysfunctions is an approach for holding the disease at the sub-clinical level, we established a novel conditional model for Cre-mediated expression of a dominant-negative PrP mutant (PrPQ167R) in the cells of interest. Dominant-negative PrP mutants provide protection of prion induced dysfunctions by inhibiting prion replication. Transgenic mice were generated carrying a floxed LacZ marker gene followed by the coding sequence of PrPQ167R under control of the human ubiquitin C promoter. Two Cre strains have been used to direct PrPQ167R expression either to a subset of MN of the spinal cord (Hb9-Cre) or to various neuronal cell populations of the spinal cord and brain (NF-L-Cre). Transgenic mice were infected with mouse-adapted prions via different inoculation routes (intranerval, intracerebral and intraperitoneal) and monitored for effects on incubation time and pathology. Tg floxed LacZ-PrPQ167R/NF-L-Cre mice showed about 15% prolonged survival upon intraperitoneal low dose prion infection, whereas survival of Tg floxed LacZ-PrPQ167R/Hb9-Cre mice was comparable to control littermates. The results suggest that the protection of spinal MN prolongs the incubation period but is not sufficient to completely inhibit clinical prion disease. In a second approach, Cre was transferred into the hind limb muscles of transgenic mice via a double-stranded adeno-associated virus vector (dsAAV2-Cre). The goal of this strategy was to target a broader cell population and thus to enhance expression levels of protective PrPQ167R in the spinal cord of Tg floxed-LacZ-PrPQ167R mice. After intramuscular (i.m.) application of dsAAV2-Cre, exhibiting a physical titer of 5x1010 GP/ml, recombinant transgenic DNA was detected only in the muscle tissue, pointing out that functional Cre-recombinase was expressed at the side of virus application. However, dsAAV2-Cre did neither induce recombination of transgenic DNA in the spinal cord or brain nor expression of dominant-negative PrPQ167R. In conclusion the dsAAV2-Cre vectors system needs further improvement to achieve efficient transport from muscle tissue to the central nervous system (CNS). 105 7 SUMMARY The lymphoreticular system (LRS) is an early site of prion replication. In splenic tissue prion infectivity is associated with follicular dendritic cells (FDC) as well as with Band T-lymphocytes. However, it is still unknown if those cell types are able to replicate the infectious agent or if other PrP-expressing cell types are engaged. To investigate if neurons and in particular MN are involved, transgenic mice carrying one allele of floxed Prnp (lox2+=��) and either one allele of Hb9-Cre or NF-L-Cre were generated on a Prnp0=0 background. Therefore a conditional PrP knockout was established in a subset of MN of the spinal cord (Hb9-Cre) or in various neuronal populations of the spinal cord and brain (NF-L-Cre). Transgenic mice were inoculated with prions to study the accumulation of PrPSc and prion infectivity in spleen and spinal cord at an early time point after infection. The findings show that PrPSc accumulation in mice with MN-specific PrP depletion (lox2+=��/ Hb9-Cre) was comparable to control littermates, while pan-neuronal PrP deficient mice (lox2+=��/NF-L-Cre) were not able to accumulate PrPSc in splenic tissue until 50 days post inoculation. Moreover spleens of lox2+=��/NF-L-Cre mice exhibited a clearly reduced prion infectivity titer, suggesting that accumulation of prions in the spleen is dependent on PrP expression in the nervous tissue.
Adducing a number of illustrations of Shakespeare's "The Tempest" and "Othello", the purpose of this study is to analyze the transformative processes that took place in the 18th and 18th centuries in Great Britain, regarding the cultural, political and social aspects of its encounters with the other. In this context, especially the depiction of the characters Caliban and Othello are taken into consideration.
TWEAK is a typical member oft he TNF ligand family. Therefore it is initially expressed as a type II transmembrane protein, but a soluble variant can be released by proteolytic processing. In this work it is shown that oligomerized TWEAK is more competent than soluble, trimeric TWEAK regarding the activation of classical NFκB signaling pathway. However, both TWEAK variants are able to induce depletion of TRAF2 and processing of p100, which are hallmarks for the activation of the noncanonical NFκB pathway. Like other solube TNF ligands with no or poor activity on their corresponding receptor, TWEAK gains high activity upon oligomerization resembling the activity of the transmembrane ligand. TRAF2 has a key role in TWEAK-induced NFκB signaling. Depletion or degradation of TRAF2 is crucial for activation of the noncanonial or both, the classical and the noncanonical NFκB pathway. Blocking the TWEAK receptor Fn14 inhibits the activation of NFκB signaling, irrespective of the TWEAK form used for stimulation. This indicates that the different activities of the two TWEAK variants in activation of classical and noncanonical NFκB signaling are not caused by the use of different receptors. Therefore this study on TWEAK is the first reported case where one TNF ligand in different variants induces qualitatively different activities of the corresponding TNF receptor.
From the introduction: It is not always easy to define what a word means. We can choose between a variety of possibilities, from simply pointing at the correct object as we say its name to lengthy definitions in encyclopaedias, which can sometimes fill multiple pages. Although the former approach is pretty straightforward and is also very important for first language acquisition, it is obviously not a practical solution for defining the semantics of the whole lexicon. The latter approach is more widely accepted in this context, but it turns out that defining dictionary and encyclopaedia entries is not an easy task. In order to simplify the challenge of defining the meaning of words, it is of great advantage to organize the lexicon in a way that the structure in which the words are integrated gives us information about the meaning of the words by showing their relation to other words. These semantic relations are the focal point of this paper. In the first chapter, different ways to describe meaning will be discussed. It will become obvious why semantic relations are a very good instrument to organizing the lexicon. The second chapter deals with WordNet, an electronic lexical database which follows precisely this approach. We will examine the semantic relations which are used in WordNet and we will study the distinct characteristics of each of them. Furthermore, we will see which contribution is made by which relation to the organization of the lexicon. Finally, we will look at the downside of the fact that WordNet is a manually engineered network by examining the shortcomings of WordNet. In the third chapter, an alternative approach to linguistics is introduced. We will discuss the principles of corpus linguistics and, using the example of the British National Corpus, we will consider possibilities to extract semantic relations from language corpora which could help to overcome the deficiencies of the knowledge based approach. In the fourth chapter, I will describe a project the goal of which is to extend WordNet by findings from cognitive linguistics. Therefore, I will discuss the development process of a piece of software that has been programmed in the course of this thesis. Furthermore, the results from a small‐scale study using this software will be analysed and evaluated in order to check for the success of the project.
Land plants must control the transpiration water stream and balance it with carbon dioxide uptake for optimal photosynthesis. A highly specialized type of plant cell called guard cells have evolutionary appeared which are suited for this complicated purpose. Guard cells are located by pairs on aerated plant surface and form stomata – structural units, which represent highly regulated “watergate” (Roelfsema and Hedrich, 2005). Guard cells sense many environmental and internal plant-derived stimuli and by changing degree of their swelling tightly regulate diffusion of water vapor and other gases. Cell processes taking place in stomata during their movements had been a subject of intensive investigation for more than three decades (Schroeder et al., 2001; Assmann and Shimazaki, 1999). With use of electrophysiological technique the basic processes underlying stomatal movements were described (Thiel et al., 1992; Dietrich et. al., 2001; Roelfsema and Hedrich, 2005). Another set of questions arised between plant biologists is how the signals affecting stomatal aperture are transduced in guard cells starting from perception by receptor structures and ending on the osmodynamic motor components. Introduction of fluorescent microspectroscopy technique allowed to characterize some Ca2+ and H+-based signaling events, taking place in the cytoplasm during stomata function. Most of the processes, taking place in stomata were characterized in guard cell preparations, such as strips of isolated leaf epidermis or guard cell protoplasts, - cells with enzymaticaly digested cell walls. Some experimental observations although point that reactions of guard cells located in their natural environment, leaves of intact plants can differ from those could be registered in preparations. These deviations might be explained by the modulation of guard cell function by apoplastic factors originating from surrounding tissues like mesophyll or leaf epidermis (Roelfsema and Hedrich, 2002). On the other hand registration of physiological responses in prepared tissues may also contain possible artifacts, related to the preparation procedures. The aim of the experimental work presented here was to investigate the cell signaling events, taking place in guard cells upon plant stress hormone abscisic acid (ABA) and some other stimuli action. Abscisic acid is a compound that synthesized in plant roots upon drought and closes stomata in the leaf to prevent the plant organism from excessive water loss. Previous studies on guard cell of isolated epidermis and guard cell protoplasts showed, that ABA induces stomatal closure via activation of plasma membrane anion channels (Grabov et al., 1997; Pei et al, 1997). Anion channels are known to be activated by elevated 2 concentrations of cytoplasmic Ca2+ [Ca2+]cyt (Schroeder and Hagiwara, 1989; Hedrich et al., 1990). Application of Ca2+-sensitive fluorescent probes revealed [Ca2+]cyt increases in guard cells upon ABA action (McAinsh et al., 1990). This observation led to suggestion that [Ca2+]cyt directly participate in the transduction of ABA signal in guard cells. Although no direct evidences for co-occurrence of [Ca2+]cyt rises and following activation of anion channels upon ABA action was not presented until yet. Results of experimental work performed on intact Vicia faba, Commelina communis and Nicotiana plumbagnifolia plants showed that guard cells of intact plant leaves respond with transient activation of plasma membrane anion channels upon perception of ABA. Kinetics of the response is highly reproducible and seemed to be conserved between species. Although despite clear generation of anion current transients, no [Ca2+]cyt increases could be recorded with using fluorescent probe Fura-2 microinjected into the cytoplasm. Together with results of later study on intact Nicotiana tabacum guard cells, reported obligatory [Ca2+]cyt increases which were desynchronized with anion current transients (Marten et al., 2007b) this, may indicate that [Ca2+]cyt increases are not necessary component of ABA signal transduction pathway. Together with absence of the effect of cytoplasm-delivered Ca2+- mobilizing agents IP3, IP6 and NAADP on anion currents these data may suppose that role of [Ca2+]cyt in ABA signaling must be reassessed. Further interest represented characterization of [Ca2+]cyt signaling and homeostasis in intact guard cells comparing with those in prepared cells. Experiments revealed strong deviations in [Ca2+]cyt behavior between different measuring systems. While guard cells of intact plants were able to strictly maintain [Ca2+]cyt level upon experimental shifting of [Ca2+]cyt level in either direction of elevation or decrease, cells of isolated epidermis showed complete absence of such ability. Guard cell protoplasts showed even weaker [Ca2+]cyt regulation ability and were capable of low physiological [Ca2+]cyt levels maintaining only at depolarized membrane potentials. Apart to these differences, prepared guard cells showed also for-time less activation of anion currents by experimentally imposed [Ca2+]cyt increases. These data strongly suggest that registered in guard cell preparations [Ca2+]cyt signals may contain significant part of artifacts and must be carefully used for the building of models of guard cells signaling. Further experimental investigations are strongly required for understanding guard cell functioning, especially with relation of vacuoles participation. The experimental work was done by the author in the period from october 2001 until november 2004 under supervision of Professor Dr. Rainer Hedrich in laboratory of molecular plant physiology and biophysics at Julius-Maximillians University of Würzburg, Würz3 burg, Federal Republic of Germany. Scientific coordinator of the Ph. D. project is Dr. Max Robert Gustaaf Roelfsema, University of Würzburg. Most of experimental results, presented here (chapter III) are also published elsewhere (Roelfsema et al., 2004; Langer et al., 2004; Levchenko et al., 2005, 2008). Chapter I intend to shortly introduce the reader into the field of guard cell research and point out the current level of understanding regarding this branch of plant research. Special attention is given to description of guard cell ion channels, their function and regulation, including the mechanisms of Ca2+-, H+- and phosphorylation-based signaling. This section is preceded by a short history of guard cell research and explains the actuality of presented work. In chapter II experimental techniques, methods and data processing approaches, used in the presented work are described. Technique used for electrophysiological registrations on intact plant leaves were used before and described in more details by Roelfsema et al. (2001). Fluorescent microspectroscopy technique was for the first time applied to intact plant leaves in this work and described in more details including calibration of Fura-2 based measurements. Chapter III presents the major results of the experimental work. In chapter IV the experimental results are discussed and put into context with current knowledge of guard cell function knowledge. Finally, remarks on perspectives of guard cell signaling research are drawn.
Extracellular signals are translated and amplified via cascades of serially switched protein kinases, MAP kinases (MAPKs). One of the MAP pathways, the classical RAS/RAF/MEK/ERK pathway, transduces signals from receptor tyrosine kinases and plays a central role in regulation of cell proliferation. RAF kinases (A-, B- and C-RAF) function atop of this cascade and convert signals emanating from conformational change of RAS GTPases into their kinase activity, which in turn phosphorylates their immediate substrate, MEK. Disregulated kinase activity of RAF can result in tumor formation, as documented for many types of cancer, predominantly melanomas and thyroid carcinomas (B-RAF). A-RAF is the least characterized RAF, possibly due to its low intrinsic kinase activity and comparatively mild phenotype of A-RAF knockout mice. Nevertheless, the unique phenotype of araf -/- mice, showed predominantly neurological abnormalities such as cerebellum disorders, suggesting that A-RAF participates in a specific process not complemented by activities of B- and CRAF. Here we describe the role of A-RAF in membrane trafficking and identify its function in a specific step of endocytosis. This work led to the discovery of a C-terminally truncated version of A-RAF, AR149 that strongly interfered with cell growth and polarization in yeast and with endocytosis and actin polymerization in mammalian cells. As this work was in progress two splicing isoforms of ARAF, termed DA-RAF1 and DA-RAF2 were described that act as natural inhibitors of RAS-ERK signaling during myogenic differentiation (Yokoyama et al., 2007). DA-RAF2 contains the first 153 aa of A-RAF and thus is nearly identical with AR149. AR149 localized specifically to the recycling endosomal compartments as confirmed by colocalization and coimmunoprecipitation with ARF6. Expression of AR149 interferes with recycling of endocytosed transferrin (Tfn) and with actin polymerization. The endocytic compartment, where internalized Tfn is trapped, was identified as ARF6- and RAB11- positive endocytic vesicles. We conclude that the inhibition of Tfn trafficking in the absence of A-RAF or under overexpression of AR149 occurs between tubular- and TGNassociated recycling endosomal compartments. siRNA-mediated depletion of endogenous A-RAF or inhibition of MEK by U0126 mimic the AR149 overexpression phenotype, supporting a role of ARAF regulated ERK signalling at endosomes that is controlled by AR149 and targets ARF6. Our data additionally suggest EFA6 as a partner of A-RAF during activation of ARF6. The novel findings on the A-RAF localization and the interaction with ARF6 have led to a new model of ARAF function were A-RAF via activation of ARF6 controls the recycling of endocytic vesicles.Endocytosis and rapid recycling of synaptic vesicles is critically important for the physiological function of neurons. The finding, that A-RAF regulates endocytic recycling open a new perspective for investigation of the role of A-RAF in the nervous system.
Insects have evolved an astonishing array of defences to ward off enemies. Well-known and widespread is the regurgitation of oral secretions (OS), fluids that repel attacking predators. In herbivores, the effectiveness of OS has been ascribed so far to the presence of deterrent secondary metabolites sequestered from the host plant. This notion implies, however, that generalists experience less protection on plants with low amounts of secondary metabolites or with compounds ineffective against potential enemies. Resolving the dilemma, we describe a novel defence mechanism that is independent of deterrents as it relies on the OS’ intrinsic detergent properties. The OS of Spodoptera exigua (and other species) was found to be highly amphiphilic and well capable of wetting the hydrophobic cuticle of predatory ants. As a result, affected ants stopped attacking and engaged in extensive cleansing. The presence of surfactants was sufficient to explain the defensive character of herbivore OS. We hypothesize that detergency is a common but unrecognised mode of defence which provides a base level of protection that may or may not be further enhanced by plant-derived deterrents. Our study also proves that insects ‘invented’ the use of defensive surfactants long before modern agriculture had started applying them as insecticides.
In the generalized Nash equilibrium problem not only the cost function of a player depends on the rival players' decisions, but also his constraints. This thesis presents different iterative methods for the numerical computation of a generalized Nash equilibrium, some of them globally, others locally superlinearly convergent. These methods are based on either reformulations of the generalized Nash equilibrium problem as an optimization problem, or on a fixed point formulation. The key tool for these reformulations is the Nikaido-Isoda function. Numerical results for various problem from the literature are given.
The olfactory system of leafcutting ants: neuroanatomy and the correlation to social organization
(2009)
In leaf-cutting ants (genera Atta and Acromyrmex), the worker caste exhibits a pronounced size-polymorphism, and division of labor is largely dependent on worker size (alloethism). Behavioral studies have shown a rich diversity of olfactory-guided behaviors, and the olfactory system seems to be highly developed and very sensitive. To allow fine-tuned behavioral responses to different tasks, adaptations within the olfactory system of different sized workers are expected. In a recent study, two different phenotypes of the antennal lobe of Atta vollenweideri workers were found: MG- and RG-phenotype (with and without a macroglomerulus, MG). The existence of the macroglomerulus is correlated to the body size of workers, with small workers showing the RG-phenotype and large workers showing the MG-phenotype. In the MG, the information about the releaser component of the trail-pheromone is processed. In the first part of my PhD-project, I focus on quantifying behavioral differences between different sized workers in Atta vollenweideri. The study analyzes the trail following behavior; which can be generally performed by all workers. An artificial trail consisting of the releaser component of the trail-pheromone in decreasing concentration was used to test the trail-following performance of individual workers. The trail-following performance of the polymorphic workers is depended of the existence of the MG in the antennal lobe. Workers possessing the MG-phenotype were significantly better in following a decreasing trail then workers showing the RG-phenotype. In the second part I address the question if there are more structural differences, besides the MG, in the olfactory system of different sized workers. Therefore I analyze whether the glomerular numbers are related to worker size. The antennal lobes of small workers contain ~390 glomeruli (low-number; LN-phenotype), and in large workers I found a substantially higher number of ~440 glomeruli (high-number; HN-phenotype). All LN-phenotype workers and some of the small HN-phenotype workers do not possess an MG (LN-RG-phenotype and HN-RG-phenotype) at all, whereas the remaining majority of HN-phenotype workers do possess an MG (HN-MG-phenotype). Mass-stainings of antennal olfactory receptor neurons revealed that the sensory tracts divide the antennal lobe into six clusters of glomeruli (T1-T6). In the T4-cluster ~50 glomeruli are missing in the LN-phenotype workers. Selective staining of single sensilla and their associated receptor neurons showed that T4-glomeruli are innervated by receptor neurons from the main type of olfactory sensilla, the Sensilla trichodea curvata which are also projecting to glomeruli in all other clusters. The other type of olfactory sensilla, the Sensilla basiconica, exclusively innervates T6-glomeruli. Quantitative analyses revealed a correlation between the number of Sensilla basiconica and the volume of T6 glomeruli in different sized workers. The results of both behavioral and neuroanatomical studies in Atta vollenweideri suggest that developmental plasticity of antennal-lobe phenotypes promotes differences in olfactory-guided behavior which may underlie task specialization within ant colonies. The last part of my project focuses on the evolutionary origin of the macroglomerulus and the number of glomeruli in the antennal lobe. I compared the number, volumes and position of the glomeruli of the antennal lobe of 25 different species from all three major Attini groups (lower, higher and leaf-cutting Attini). The antennal lobes of all investigated Attini comprise a high number of glomeruli (257-630). The highest number was found in Apterostigma cf. mayri. This species is at a basal position within the Attini phylogeny, and a high number of glomeruli might have been advantageous in the evolution of the advanced olfactory systems of this Taxa. The macroglomerulus can be found in all investigated leaf-cutting Attini, but in none of the lower and higher Attini species. It is found only in large workers, and is located close to the entrance of the antennal nerve in all investigated species. The results indicate that the presence of a macroglomerulus in large workers of leaf-cutting Attini is a derived overexpression of a trait in the polymorphic leaf-cutting species. It presumably represents an olfactory adaptation to elaborate foraging and mass recruitment systems, and adds to the complexity of division of labor and social organization known for this group.
Fragmentation, deterioration, and loss of habitat patches threaten the survival of many insect species. Depending on their trophic level, species may be differently affected by these factors. However, studies investigating more than one trophic level on a landscape scale are still rare. In the present study we analyzed the effects of habitat size, isolation, and quality for the occurrence and population density of the endangered leaf beetle Cassida canaliculata Laich. (Coleoptera: Chrysomelidae) and its egg parasitoid, the hymenopteran wasp Foersterella reptans Nees (Hymenoptera: Tetracampidae). C. canaliculata is strictly monophagous on meadow sage (Salvia pratensis), while F. reptans can also parasitize other hosts. Both size and isolation of habitat patches strongly determined the occurrence of the beetle. However, population density increased to a much greater extent with increasing host plant density ( = habitat quality) than with habitat size. The occurrence probability of the egg parasitoid increased with increasing population density of C. canaliculata. In conclusion, although maintaining large, well-connected patches with high host plant density is surely the major conservation goal for the specialized herbivore C. canaliculata, also small patches with high host plant densities can support viable populations and should thus be conserved. The less specialized parasitoid F. reptans is more likely to be found on patches with high beetle density, while patch size and isolation seem to be less important.
The main purpose of volcano-seismology concerns the qualitative and quantitative description of one or more unknown seismic source(s) located at some unknown depth beneath a volcano. Even if many different volcanoes show similar seismic signal characteristics, up to now it was not possible to find a standard seismic source model for volcanoes, as the double-couple in earthquake seismology. Volcanoes with a continuous activity, like Stromboli (Italy), represent for the volcano seismologist a perfect natural laboratory to address this question. This thesis treats the study of explosion-quakes and volcanic tremor recorded on Stromboli in a broadband frequency range, and discusses the location and the possible mechanisms of the seismic source(s). Seismic and infrasonic recordings of explosion-quake from Stromboli showed that the high-frequency phase propagates with a velocity of approximately 330 m/s. The seismic source can be explained as an explosion at the top of the magma column generated by rising gas bubbles. The seismic P-wave and the air-wave are both generated in the same point at the same time. The different path lengths and velocities for the seismic wave and the air-wave result in a difference in arrival times dt, that could be used to deduce the magma level and sound speed in the eruption column inside the conduit. Stations installed near the active crater reveal that infrasonic and seismic recordings of the short-period tremor (> 1 Hz) share the same spectral content and show similar energy fluctuations. Therefore, the short-period volcanic tremor at Stromboli originates from the continuous out-bursting of small gas bubbles in the upper part of the magmatic column. The spectrum of the long-period tremor recorded at Stromboli consists of three main peaks with periods at 4.8 s, 6 s and 10 s, and amplitudes varying with the regional meteorological situation. Hence, they are not generated by a close volcanic source but rather by ocean microseisms (OMS). The passage of a local cyclone seems to be the seismic source for spectral energy at 4.8 s and 10 s, which represent the Double Frequency and the Primary Frequency of the OMS, respectively. Concerning the 6 s peak, a cyclone near the British Isles could act as a seismic source. Seismic data from the first broadband array deployed on Stromboli showed surprisingly simple waveforms, indicating an initially contracting source mechanism. The analysis of particle motion and the application of seismic array techniques allowed the location of a seismic source in the shallow part of the volcano. Eruption parameters and seismic source characteristics of the April 5, 2003 Stromboli eruption have been estimated using different inversion approaches. The paroxysm was triggered by a shallow slow thrust-faulting dislocation event with a moment magnitude of Mw = 3.0 and possibly associated with a crack that formed previously by dike extrusion. At least one blow-out phase during the paroxysmal explosion could be identified from seismic signals with an equivalent moment magnitude of Mw = 3.7. It can be represented by a vertical linear vector dipole and two weaker horizontal linear dipoles in opposite direction, plus a vertical force. Seismic measurements performed during controlled and reproducible blow-out experiments with a gas volume entrapped in basaltic melt revealed the following: Monochromatic seismic signals suggest a blow-out in a more ductile regime, whereas broader frequency content indicates rupture in a more brittle environment. The longer the crucible, the weaker the seismic signals. An increase in pressure results in a stronger fragmentation, but not in a higher ejection velocity of the plug neither in a higher seismic amplitude. Even if the very long period observations like the tilt signal could not be simulated in the laboratory, the blow-out experiments simulate very well the short-period seismic signals recorded at Stromboli volcano.
The chick midbrain is subdivided into functionally distinct ventral and dorsal domains, tegmentum and optic tectum. In the mature tectum, neurons are organized in layers, while they form discrete nuclei in the tegmentum. An interesting characteristic of the embryonic brain is the development of a large optic tectum, of which the growth becomes obvious at embryonic day 3 (E3). Dorsoventral (DV) specification of the early midbrain should thus play a crucial role for the organization of the neuronal circuitry in optic tectum and tegmentum. In the first part of my thesis, I investigated regional commitment and establishment of cellular differences along the midbrain DV axis. I examined the commitment of gene expression patterns in isolated ventral and dorsal tissue in vivo and in vitro, and studied their cell mixing properties. Explant cultures, and grafting of dorsal midbrain into a ventral environment or vice versa, revealed a gradual increase in the autonomy of region-specific gene regulation between, which was accompanied by a gradual increase in differential adhesive properties from E2 to E3, once the DV axis polarity was fixed. These events happened at a time-point when the majority of midbrain cells are not yet differentiated. Long-term transplantation (6 - 9 days) using quail cells from ventral midbrain as grafts showed the same result. Hence, the results suggest that progressive specification of the midbrain DV axis is accompanied by progressively reduced cell mixing between dorsal and ventral precursors, leading to a partial regionalization of midbrain tissue into autonomous units of precursor cell populations. In the second part I investigated the genes that might be involved in regulating the growth of the tectum. In particular, I focused on the role of Pax7 transcription factor, a paired domain protein. The results suggested that Pax7 was involved in regulating the medial-lateral extension of the tectum. Over expression of Pax7 in dorsal midbrain led to an enlarged tectum accompanied by a raise in cell division, while Pax7 knockdown by shrank caused a reduction in tectum. The overall pattern of neuronal differentiation was not disturbed by an up or down regulation of Pax7. Pax7 also positively regulated Pax3, another pair-ruled gene expressed dorsally. These results suggest that Pax7 very likely together with Pax3 could facilitate or maintain neural cell proliferation in the midbrain at early stages and that a regulation of the size in that region does not influence the neuronal patterning of the developmental field. I further checked the expression and function of a GFPase Rab 23, that was suggested to be involved in the DV patterning in mouse neural tube as a negative regulator of Shh signaling. Overexpression of Rab23 indicated that it facilitated the expression of Pax7 and Pax3 in the neural tube and suppressed ventral genes like Nkx6.1 cell autonomously, however, it did not disturb neuronal patterning. Interestingly, a thorough expression study of Rab 23 during chick early development revealed that Rab23 is already expressed very early and asymmetrically during gastrulation, suggesting a possible role of Rab23 on the left-right determination of Hensen’s node. In combination with the result that Rab23 is expressed in the notochord early in development, I assume that both Rab23 and Shh exist in all neural progenitor cells initially, and when their expression patterns separate gradually the neural cells adopt a ventral or dorsal fate according to their location along the dorsoventral axis. The avian embryo is a classic system used widely to investigate questions of vertebrate development. The easy and cheap accessibility of the embryo for in ovo or ex ovo experiments all around the year make it an ideal animal model to work with. The only recently developed method of over expressing genes in specific cells or regions in the chick embryo by electroporation enabled me to study different ways of gene suppression using this way of gene transfection. Thus, I compared the effect of long-hairpin and short hairpin dsRNA in different vectors and antisense morpholino oligonucleotides. The results revealed that all hairpin dsRNA constructs did reduce gene and protein expression often accompanied by morphological changes. Most efficiently were shRNAi constructs cloned into a siRNA-specific vector – pSilencer 1.0-U6. Gene silencing was already well observed 36 hours after transfection. In comparison antisense morpholino oligonucleotides did not show such big gene reduction as the shRNA in pSilencer. Taken together, this methodical research proposes that the shRNA in the pSilencer vector was a good and effective tool to reduce gene and protein expression locally.
Aim of Investigation: The neurological manifestations of Fabry’s disease, a rare, X-linked, multisystem disorder caused by alpha-galactosidase A deficiency and globotriosylceramide (Gb3) accumulation, include both peripheral and central nervous system symptoms. Here we evaluated a prospectively recruited cohort of patients with Fabry’s disease for pain, small nerve fiber function, and skin innervation. Methods: 66 patients (31 male and 35 female) were enrolled,31 patients were on ERT. All patients underwent quantitative sensory testing (QST), electrophysiological examination, and extra- and transcranial Doppler sonography. For pain and mood assessment standardized questionnaires were used. Skin biopsies were performed at the left distal leg in 38 patients for intraepidermal nerve fiber density (IENFD) assessment. Results: Age at examination did not differ significantly between women (40.2+/-16.2 years) and men (38.9+/-13.8; n.s.). 29/31 male and 19/35 female patients complained of acroparesthesias or neuropathic pain. QST abnormalities indicative of small fiber impairment were found in 26/31 male and 28/35 female patients. Electrophysiological examination of large fibers and autonomic fibers revealed pathological findings in 11/31 male and 3/35 female patients. All patients had normal Doppler sonography results. Indicators for depression were present in 14/31 male and 10/35 female patients. 20/31 male and 18/35 female patients had a skin biopsy, the IENFD was significantly reduced in male (2.0+/-2.8 fibers/mm) compared with female patients (6.7 +/- 4.4 fibers/mm). In 10 patients free from neurological symptoms, QST and IENFD abnormalities were still detected. Follow up examination after one year in 12 patients under ERT (2.1+/-1.7 years) showed improvement in some symptoms and in QST and neurophysiology in six patients with normal renal function. 20/35 female patients older than 40 y had concomitant diseases, while none of the 18 younger female patients did. The corresponding radio in male patients was 5/19 (>=40y) and 2/13 (<40y) respectively. Conclusions: Neuropathic pain and sensory deficits of the distal extremities are common in patients with Fabry’s disease. QST and IENFD analysis are important for early diagnosis of nerve involvement in Fabry’s disease. Small fiber function may improve under ERT in patients without severe renal impairment.
In the first part of this work we presented the synthesis and photophysical properties of a series of transition metal donor-acceptor Ir(III)complexes of the type [(C^N)2Ir(N^N)][PF6]. The Ir(III) was connected with hole conducting donor-moieties like carbazole (CZ) and triarylamine (TAA) linked via a methylene and ethylene bridge to the cyclometalating C^N ligands phenylpyrazole (ppz) and phenylpyridine (ppy). Bidentate N^N and P^P ligands like 2,2’-bipyridyl (bpy), 3,4,7,8-tetramethyl-1,10-phenanthroline (tmp) and cis-1,2-bis(diphenylphosphino)ethylene (bdppe) were used as acceptor units. In order to analyse the influence of the electron density of the bpy ligand, TAA-complexes with acceptor- and donor-substituted bpy acceptor units were synthesised. Therefore, 4,4’-dinitro-2,2’-bipyridyl, 4,4’-dichloro-2,2’-bipyridyl, 4,4’-dimethoxy-2,2’-bipyridyl and 4,4’-dimethylamino-2,2’bipyridyl were used as neutral N^N ligands. In order to compare the photophysical properties, all reference compounds without hole conducting component were syntesised. All the carbazole compounds, except the bdppe complexes, exhibit emission and transient absorption properties similar to their reference compounds that make them interesting for OLED (organic light emitting device) applications. LEC (light emitting electrochemical cell) studies show a red shifted luminescence. The triarylamine compounds do not luminesce at RT but they exhibit an intense, blue-shifted and long-lived luminescence at 77 K in a rigid matrix. The transient absorption spectra differ strongly from that of their reference compounds. The spectra display characteristic features of the spectra of the isolated radical anions and cations supported by spectroelectrochemical measurements. Thus, it can be assumed that the transient states are charge separated (CS) states in which the positive charge is localised at the TAA donor units and the negative charge at the N^N acceptor units. The decays of the transient states are biexponentially what indicates the presence of two transient states, the 1CS and the 3CS state. To understand this behaviour the differently substituted bipyridyl-complexes were synthesised and analysed. Temperature dependent transient absorption measurements showed that all rate constants are indepentend of the temperature, except for the complex with OMe subsituents at the bpy ligand. The equilibrium constant K = k1 / k2 is nearly one for all complexes. For the OMe-compound it decreases with increasing temperature. Plotting the rate constants vs. the free energy differences (determined by cyclovoltammetry measurements) shows that all constants are decreasing with increasing donor strength of the bpy ligand. DFT calculations on the OMe-compound are already in work. In the second part of this work, neutral Ir(III) and Pt(II) complexes of the type [(O^O)Ir(N^N)2] and [(O^O)Pt(N^N)] were introduced. There, TTA was connected directly or via a CH2 bridge to acectylacetonate (acac = O^O) in order to probe the influence of the different kinds of connection on the photophysics of the complexes. As the bidentate N^N ligand 2,2’-bipyridyl (bpy) was chosen. All the corresponding reference compounds without triarylamine were obtained in order to compare with the TAA substituted analoga. Furthermore, the homoleptic fac Ir(N^N)3 complex with triarylamine connected via a methylene and ethylene bridge to phenylpyrazole as introduced in the first part of this work was synthesised. The synthesis of the Ir(III) compound with the TAA substituted acac ligand connected via the CH2 group was not successful. All the neutral triarylamine-substituted -diketonato Pt(II) and Ir(III) complexes do not luminesce at RT, except the Pt(II)-complex with CH2 bridge. This compound shows transient state characteristics that are in good agreement with the luminescence lifetimes at RT and that are similar to the reference compound, what suggests to a 3Pt(N^N)(O^O) state. The complexes without the CH2 bridging unit show no transient signals what may be caused by charge-transfer quenching due to the direct linkage between donor and acceptor unit. The homoleptic fac Ir(N^N)3 complex exhibits no emission at RT and no transient signals. At 77 K it shows a highly structured emission with 14 s lifetime. Compared to the literature-known reference compound this emission is caused by the population of a 3Ir(ppz)3 state. Our findings are important for designing complexes with stronger acceptor units (i.e. naphthaleneimide) for long CS states lifetimes to be used as photosynthesisers in solar cells and other optoelectronic devices. Besides, LEC and OLED studies on the carbazole complexes are still of interest to analyse the degree of triplet-triplet-annihiliation in these devices.
Two-particle excitations, such as spin and charge excitations, play a key role in high-Tc cuprate superconductors (HTSC). Due to the antiferromagnetism of the parent compound the magnetic excitations are supposed to be directly related to the mechanism of superconductivity. In particular, the so-called resonance mode is a promising candidate for the pairing glue, a bosonic excitation mediating the electronic pairing. In addition, its interactions with itinerant electrons may be responsible for some of the observed properties of HTSC. Hence, getting to the bottom of the resonance mode is crucial for a deeper understanding of the cuprate materials . To analyze the corresponding two-particle correlation functions we develop in the present thesis a new, non-perturbative and parameter-free technique for T=0 which is based on the Variational Cluster Approach (VCA, an embedded cluster method for one-particle Green's functions). Guided by the spirit of the VCA we extract an effective electron-hole vertex from an isolated cluster and use a fully renormalized bubble susceptibility chi0 including the VCA one-particle propagators.Within our new approach, the magnetic excitations of HTSC are shown to be reproduced for the Hubbard model within the relevant strong-coupling regime. Exceptionally, the famous resonance mode occurring in the underdoped regime within the superconductivity-induced gap of spin-flip electron-hole excitations is obtained. Its intensity and hourglass dispersion are in good overall agreement with experiments. Furthermore, characteristic features such as the position in energy of the resonance mode and the difference of the imaginary part of the susceptibility in the superconducting and the normal states are in accord with Inelastic Neutron Scattering (INS) experiments. For the first time, a strongly-correlated parameter-free calculation revealed these salient magnetic properties supporting the S=1 magnetic exciton scenario for the resonance mode. Besides the INS data on magnetic properties further important new insights were gained recently via ARPES (Angle-Resolved Photoemission-Spectroscopy) and Raman experiments which disclosed a quite different doping dependence of the antinodal compared to the near-nodal gap. This thesis provides an approach to the Raman response similar to the magnetic case for inspecting this gap dichotomy. In agreement with experiments and one-particle data obtained in the VCA, we recover the antinodal gap decreasing and the near-nodal gap increasing as a function of doping. Hence, our results prove the Hubbard model to account for these salient gap features. In summary, we develop a two-particle cluster approach which is appropriate for the strongly-correlated regime and contains no free parameter. Our results obtained with this new approach combined with the phase diagram and the one-particle excitations obtained in the VCA strongly constitute a Hubbard model description of HTSC cuprate materials.