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1. Pollination of sexually reproducing plants requires pollen transfer agents, which can be biotic, abiotic or a combination of biotic and abiotic agents. The dominance of one of pollination system in wild plant communities depends on climatic factors and/or degrees of anthropogenic influences, which have effects on pollinator diversity and pollination function. Anthropogenic activities and climate change are also considered as main causes of ongoing invasion of invasive species into wild and managed habitats which can bring up competition for pollinators with possible negative consequences for the reproduction of co-occurring native plant species.
2. The study aimed to determine pollination systems and pollination limitation of invasive and native plant communities in natural savannah between 870 – 1130 m and semi-natural (managed) grassland between 1300 – 1750 m above sea level; effects of flower density and pollinator abundance on seed production of cross-pollinated and self-pollinated plants; and relationships of bee abundance and the proportion of cross- pollinated plants at the southern slope of Mount Kilimanjaro, Tanzania.
3. Pollinator-exclusion, open pollination and supplemental hand-pollination treatments were applied to 27 plant species in savannah and grassland habitats. Flowers were counted in each clusters based upon their species. Pollinators were sampled by using pan traps. Information-theory-based multi-model averaging and generalized linear mixed effects models were used to identify and analyze the effects of flower density, pollinator abundance, pollination treatments and habitat types on seed production. Regression models were used to determine relationships of altitude with bee abundance, and with proportion of cross-pollinated plants.
4. My results show that mean seed numbers of native plants were significantly lower in pollinator-exclusion treatments than in open-pollination treatments, indicating their reliance on pollinators for reproductive success. In contrast, seed numbers of invasive plants were similar in pollinator-exclusion and open-pollination treatments, demonstrating an ability of reproduction without pollinators. Despite of higher levels of self-pollination in invasive plants, supplemental hand-pollination treatments revealed pollen limitation in grassland and marginally in savannah habitats. There were no significant difference in seed numbers between supplemental hand pollination and open pollination treatments of native plant communities in savannah and grassland, which indicates no pollination limitation in the studied ecological system for native communities. Besides, grassland plants produced comparatively more seeds than savannah plants, however seeds in grasslands were lighter than those of the savannah which may be due to nutrient limitation in grassland.
5. I found 12 cross-pollinated and 15 self-pollinated plants along altitudinal gradient after comparing seeds from pollinator-excluded and open-pollinated experiments. I also found that proportions of cross-pollinated plants and bee abundance simultaneously decreased with increasing altitude. All cross-pollinated plants were native and grew in savannah habitats, with an exception of one species.
6. Neither effects of focal flower density nor a significant interaction between focal flower densities and bee abundance for self-pollinated plants were observed. However, there were effects of focal flower densities and interactions of flower density with bee abundance for cross-pollinated plants. Non-focal flower density has no significant effects on seed production of cross-pollinated and self-pollinated plants.
7. The results show that native plants depend more on cross-pollination than invasive plants, despite of most native plants in managed habitat (grassland) rely on self-pollination for reproduction. The tendency of having more cross-pollinated plants in natural savannah which are in low altitude coincides with other finding that the cross-pollinated plants and bee abundance simultaneously decrease with increasing altitude. Therefore, our findings support the hypotheses that self-fertilization of flowering plants increases with increasing altitude, and pollinator limitation is most pronounced in managed or disturbed habitats. Despite of reduction of pollinators in grassland, only invasive plants experience pollen limitation, which may be due to poor integration with available pollinator networks.
8. I also found bee abundance and flower density are not the main pollination factors required by self-pollinated plants during reproduction. However, focal flower density, which influences pollinator diversity, is more applicable to cross-pollinated plants. Climate change and anthropogenic activities in natural habitats are factors that influence pollinator abundance and functioning, which lead to a shift of mating systems in plant communities so as to assure their reproduction.
In attempting to solve the regular inverse Galois problem for arbitrary subfields K of C (particularly for K=Q), a very important result by Fried and Völklein reduces the existence of regular Galois extensions F|K(t) with Galois group G to the existence of K-rational points on components of certain moduli spaces for families of covers of the projective line, known as Hurwitz spaces.
In some cases, the existence of rational points on Hurwitz spaces has been proven by theoretical criteria. In general, however, the question whether a given Hurwitz space has any rational point remains a very difficult problem. In concrete cases, it may be tackled by an explicit computation of a Hurwitz space and the corresponding family of covers.
The aim of this work is to collect and expand on the various techniques that may be used to solve such computational problems and apply them to tackle several families of Galois theoretic interest. In particular, in Chapter 5, we compute explicit curve equations for Hurwitz spaces for certain families of \(M_{24}\) and \(M_{23}\).
These are (to my knowledge) the first examples of explicitly computed Hurwitz spaces of such high genus. They might be used to realize \(M_{23}\) as a regular Galois group over Q if one manages to find suitable points on them.
Apart from the calculation of explicit algebraic equations, we produce complex approximations for polynomials with genus zero ramification of several different ramification types in \(M_{24}\) and \(M_{23}\). These may be used as starting points for similar computations.
The main motivation for these computations is the fact that \(M_{23}\) is currently the only remaining sporadic group that is not known to occur as a Galois group over Q.
We also compute the first explicit polynomials with Galois groups \(G=P\Gamma L_3(4), PGL_3(4), PSL_3(4)\) and \(PSL_5(2)\) over Q(t).
Special attention will be given to reality questions. As an application we compute the first examples of totally real polynomials with Galois groups \(PGL_2(11)\) and \(PSL_3(3)\) over Q.
As a suggestion for further research, we describe an explicit algorithmic version of "Algebraic Patching", following the theory described e.g. by M. Jarden. This could be used to conquer some problems regarding families of covers of genus g>0.
Finally, we present explicit Magma implementations for several of the most important algorithms involved in our computations.
With the introduction of OpenFlow by the Stanford University in 2008, a process began in the area of network research, which questions the predominant approach of fully distributed network control. OpenFlow is a communication protocol that allows the externalization of the network control plane from the network devices, such as a router, and to realize it as a logically-centralized entity in software. For this concept, the term "Software Defined Networking" (SDN) was coined during scientific discourse.
For the network operators, this concept has several advantages. The two most important can be summarized under the points cost savings and flexibility. Firstly, it is possible through the uniform interface for network hardware ("Southbound API"), as implemented by OpenFlow, to combine devices and software from different manufacturers, which increases the innovation and price pressure on them. Secondly, the realization of the network control plane as a freely programmable software with open interfaces ("Northbound API") provides the opportunity to adapt it to the individual circumstances of the operator's network and to exchange information with the applications it serves. This allows the network to be more flexible and to react more quickly to changing circumstances as well as transport the traffic more effectively and tailored to the user’s "Quality of Experience" (QoE).
The approach of a separate network control layer for packet-based networks is not new and has already been proposed several times in the past. Therefore, the SDN approach has raised many questions about its feasibility in terms of efficiency and applicability. These questions are caused to some extent by the fact that there is no generally accepted definition of the SDN concept to date. It is therefore a part of this thesis to derive such a definition. In addition, several of the open issues are investigated. This Investigations follow the three aspects: Performance Evaluation of Software Defined Networking, applications on the SDN control layer, and the usability of SDN Northbound-API for creation application-awareness in network operation.
Performance Evaluation of Software Defined Networking: The question of the efficiency of an SDN-based system was from the beginning one of the most important. In this thesis, experimental measurements of the performance of OpenFlow-enabled switch hardware and control software were conducted for the purpose of answering this question. The results of these measurements were used as input parameters for establishing an analytical model of the reactive SDN approach. Through the model it could be determined that the performance of the software control layer, often called "Controller", is crucial for the overall performance of the system, but that the approach is generally viable. Based on this finding a software for analyzing the performance of SDN controllers was developed. This software allows the emulation of the forwarding layer of an SDN network towards the control software and can thus determine its performance in different situations and configurations. The measurements with this software showed that there are quite significant differences in the behavior of different control software implementations. Among other things it has been shown that some show different characteristics for various switches, in particular in terms of message processing speed. Under certain circumstances this can lead to network failures.
Applications on the SDN control layer: The core piece of software defined networking are the intelligent network applications that operate on the control layer. However, their development is still in its infancy and little is known about the technical possibilities and their limitations. Therefore, the relationship between an SDN-based and classical implementation of a network function is investigated in this thesis. This function is the monitoring of network links and the traffic they carry. A typical approach for this task has been built based on Wiretapping and specialized measurement hardware and compared with an implementation based on OpenFlow switches and a special SDN control application. The results of the comparison show that the SDN version can compete in terms of measurement accuracy for bandwidth and delay estimation with the traditional measurement set-up. However, a compromise has to be found for measurements below the millisecond range.
Another question regarding the SDN control applications is whether and how well they can solve existing problems in networks. Two programs have been developed based on SDN in this thesis to solve two typical network issues. Firstly, the tool "IPOM", which enables considerably more flexibility in the study of effects of network structures for a researcher, who is confined to a fixed physical test network topology.
The second software provides an interface between the Cloud Orchestration Software "OpenNebula" and an OpenFlow controller. The purpose of this software was to investigate experimentally whether a pre-notification of the network of an impending relocation of a virtual service in a data center is sufficient to ensure the continuous operation of that service. This was demonstrated on the example of a video service.
Usability of the SDN Northbound API for creating application-awareness in network operation: Currently, the fact that the network and the applications that run on it are developed and operated separately leads to problems in network operation. SDN offers with the Northbound-API an open interface that enables the exchange between information of both worlds during operation. One aim of this thesis was to investigate whether this interface can be exploited so that the QoE experienced by the user can be maintained on high level. For this purpose, the QoE influence factors were determined on a challenging application by means of a subjective survey study. The application is cloud gaming, in which the calculation of video game environments takes place in the cloud and is transported via video over the network to the user. It was shown that apart from the most important factor influencing QoS, i.e., packet loss on the downlink, also the type of game type and its speed play a role. This demonstrates that in addition to QoS the application state is important and should be communicated to the network. Since an implementation of such a state conscious SDN for the example of Cloud Gaming was not possible due to its proprietary implementation, in this thesis the application “YouTube video streaming” was chosen as an alternative. For this application, status information is retrievable via the "Yomo" tool and can be used for network control. It was shown that an SDN-based implementation of an application-aware network has distinct advantages over traditional network management methods and the user quality can be obtained in spite of disturbances.
Oncolytic viral therapies have shown great promise pre-clinically and in human clinical trials for the treatment of various cancers. Oncolytic viruses selectively infect and replicate in cancer cells, destroying tumor tissue via cell lysis, while leaving noncancerous tissues unharmed. Vaccinia virus (VACV) is arguably one of the safest viruses, which has been intensively studied in molecular biology and pathogenesis as a vaccine for the eradication of smallpox in more than 200 million people. It has fast and efficient replication, and cytoplasmic replication of the virus lessens the chance of recombination or integration of viral DNA into the genome of host cells. Anti-tumor therapeutic efficacy of VACV has been demonstrated for human cancers in xenograft models with a variety of tumor types. In addition recombinant oncolytic VACVs carrying imaging genes represent an advance in treatment strategy that combines tumor-specific therapeutics as well as diagnostics.
As for other targeted therapies, a number of challenges remain for the clinical translation of oncolytic virotherapy. These challenges include the potential safety risk of replication of oncolytic virus in non-tumor tissue, the relatively poor virus spread throughout solid tumor tissue and the disadvantageous ratio between anti-viral and anti-tumoral immunity. However, manipulation of components of the tumor microenvironment may help oncolytic virus infection in killing the tumor tissue and thereby increasing the anti-tumor efficacy. Furthermore, dogs with natural cancer are considered as one of the best animal models to develop new drugs for cancer therapy. Traditionally, rodent cancer models have been used for development of cancer therapeutics. However, they do not adequately represent several features that define cancer in humans, including biology of initiation of tumor, the complexity of cancer recurrence and metastasis and outcomes to novel therapies. However, the tumor microenvironment, histopathology, molecular and genomics data from dog tumors has significant similarities with corresponding human tumors. These advantages of pet dog cancers provide a unique opportunity to integrate canine cancer patients in the studies designed for the development of new cancer drugs targeted against both human and canine cancers. This dissertation centers on the use of VACV strains in canine cancer xenografts with the aim of understanding the effects of modulation of tumor microenvironment on VACV-mediated tumor therapy.
In the first studies, wild-type VACV strain LIVP6.1.1 was tested for its oncolytic efficiency in canine soft tissue sarcoma (STSA-1) and canine prostate carcinoma (DT08/40) cells in culture and xenografts models. LIVP6.1.1 infected, replicated within, and killed both STSA-1 and DT08/40 cells in cell culture. The replication of virus was more efficient in STSA-1 cells compared to DT08/40 cells. In xenograft mouse models, LIVP6.1.1 was safe and effective in regressing both STSA-1 and DT08/40 xenografts. However, tumor regression was faster in STSA-1 xenografts compared to DT08/40 xenografts presumably due to more efficient replication of virus in STSA-1 cells. Biodistribution profiles revealed persistence of virus in tumors 5 and 7 weeks post virus injection in STSA-1 and DT08/40 xenografts, respectively, with the virus mainly cleared from all other major organs. Immunofluorescence staining detected successful colonization of VACV in the tumor. Consequently, LIVP6.1.1 colonization in the tumor showed infiltration of innate immune cells mainly granulocytes and macrophages in STSA-1 tumor xenografts. These findings suggest that virotherapy-mediated anti-tumor mechanism in xenografts could be a combination of direct viral oncolysis of tumor cells and virus-dependent infiltration of tumor-associated host immune cells.
In further studies, the effects of modulation of tumor angiogenesis of VACV therapy were analyzed in canine cancer xenografts. GLV-1h109 VACV strain (derived from prototype virus GLV-1h68) encoding the anti-VEGF single chain antibody GLAF-1 was characterized for its oncolytic efficacy in STSA-1 and DT08/40 cancer cells in culture and tumor xenografts. Concomitantly, the effects of locally expressed GLAF- 1 in tumors on virus replication, host immune infiltration, tumor vascularization and tumor growth were also evaluated.
GLV-1h109 was shown to be similar to the parental virus GLV-1h68 in expression of the two marker genes that both virus strains have in common (Ruc-GFP and gusA) in cell cultures. Additionally, the anti-VEGF single-chain antibody GLAF-1 was expressed by GLV-1h109 in both cell cultures and tumor xenografts. The insertion of GLAF-1 did not significantly affect the replication and cytotoxicity of GLV-1h109 in the STSA-1 and DT08/40 cell lines, although at early time points (24-48 hpi), the replication of GLV-1h109 was higher in STSA-1 cells compared to DT08/40 cells. In addition, STSA-1 cells were more susceptible to lysis with GLV-1h109 than DT08/40 cells. GLV-1h109 achieved a significant inhibition of tumor growth in both STSA-1 and DT08/40 canine xenografts models. Consequently, the significant regression of tumor growth was initiated earlier in STSA-1 tumor xenografts compared to regression in DT08/40 xenografts. The reason for the higher efficacy of GLV-1h109 in STSA-1 xenografts than DT08/40 xenografts was attributed to more efficient replication of virus in STSA-1 cells. In addition, tumor-specific virus infection led to a continued presence of GLAF-1 in peripheral blood, which could be useful as a pharmacokinetic marker to monitor virus colonization and persistence in GLV-1h109- injected xenograft mice. GLAF-1 is a single-chain antibody targeting human and murine VEGF. It was demonstrated that GLAF-1 was functional and recognized both canine and human VEGF with equal efficiency.
Histological analysis of tumor sections 7 days after GLV-1h109 injection confirmed that colonization of VACV and intratumoral expression of GLAF-1 translated into a significant decrease in blood vessel number compared to GLV-1h68 or PBS-treated control tumors. Subsequently, reduction in blood vessel density significantly improved the spread and replication of VACV as observed by FACS analysis and standard plaque assay, respectively. Inhibition of tumor angiogenesis and increased replication of virus further improved the infiltration of innate immune cells mainly granulocytes and macrophages in STSA-1 tumor xenografts. Both the results, i.e. improved virus spread and increased infiltration of innate immune cells in tumor, were explained by a phenomenon called “vascular normalization”, where anti-VEGF therapy normalizes the heterogeneous tumor vasculature thereby improving delivery and spread of VACV. In summary, the effects of inhibition of tumor angiogenesis on virus spread and replication were demonstrated using a vaccinia virus caring an anti- angiogenic payload targeting vascular endothelial growth factor (VEGF) in canine cancer xenografts.
In the final studies, the effects of VACV therapy on modulation of the immune system were analyzed in canine cancer patients enrolled in a phase I clinical trial. V-VET1 (clinical grade LIVP6.1.1 VACV) injection significantly increased the percentages of CD3+CD8+ T lymphocytes at 21 days after initiation of treatment. CD3+CD8+ T lymphocytes are mainly cytotoxic T lymphocytes that have potential to lyse cancer cells. Subsequently, the frequency of immune suppressor cells, mainly MDSCs and Treg was also analyzed in peripheral blood of canine cancer patients. Increase in the MDSC population and decreased CD8/Treg ratio is known to have inhibitory effects on the functions of cytotoxic T cells. We demonstrated that injection of V-VET1 in canine cancer patients significantly reduced the percentages of MDSCs at 21 days post initiation of treatment. Additionally, CD8/Treg ratio was increased 21 days after initiation of V-VET1 treatment. We also showed that changes in the frequency of immune cells neither depends on dose of virus nor depends on tumor type according to the data observed from this clinical trial with eleven analyzed patients.
This preclinical and clinical data have important clinical implications of how VACV therapy can be used for the treatment of canine cancers. Moreover, dogs with natural cancers can be used as an ideal animal model to improve the oncolytic virotherapy for human cancers. Furthermore, modulation of tumor microenvironment mainly tumor angiogenesis and tumor immunity has significant impact on the success of oncolytic virotherapy.
Toll-like receptors (TLR) are pattern recognition receptors (PRR) by which macrophages (MØ) sense pathogen-associated molecular patterns (PAMPs). The recognition of lipopolysaccharide (LPS), the PAMP of gram negative bacteria, by TLR4 triggers signaling cascades and leads to the pro-inflammatory activation of the cells. A recent quantitative and kinetic analysis of the phosphoproteome of LPS-activated primary macrophages highlighted the cytoskeleton as a cell compartment with an enriched protein phosphorylation. In total 44 cytoskeleton-associated proteins were regulated by this post-translational modification and thus might be involved in the control and regulation of key macrophage functions like spreading, motility and phagocytosis.
To investigate the control of cytoskeleton-associated cell functions by TLR4 activation, we first developed a method to quantitatively measure the spreading response of bone marrow MØ after stimulation with LPS. Fluorescence microscopy was used for cell imaging and visualisation of the MØ contact area. In collaboration with the Fraunhofer Institute Erlangen, we developed and validated a software tool for the semi-automated segmentation and quantitation of MØ fluorescence microscopy data, which allowed fast, robust and objective image analysis. Using this method, we observed that LPS caused time-dependent spreading, which was detectable after 1-2 h and maximal after 24 h. Next, the impact of genetic or pharmacological inhibition of known TLR signaling components was investigated. Deficiency in the adapter protein MYD88 strongly reduced spreading activity at the late time points, but had no impact early after LPS-stimulation. A similar effect was observed upon pharmacological inhibition of ERK1/2 signaling, indicating that ERK1/2 mediates MYD88-dependent MØ spreading. In contrast, MØ lacking the MAPK p38 were impaired in the initial spreading response but responded normally 8-24 h after stimulation. The genetic deletion of the MAPK phosphatases DUSP1 and DUSP16 resulted in impaired late spreading, corroborating the essential role for functional MAPK signaling in TLR4-driven MØ spreading.
To identify the contribution of other cytoskeletal phosphoproteins to MØ spreading, siRNA knockdown of selected candidate genes in primary murine MØ was employed and combined with automated quantitative image analysis. These experiments revealed a functional role for the Myosins MYO1e and MYO1f in MØ spreading. These motor proteins are strongly phosphorylated in LPS-activated MØ. Because of their ability to simultaneously bind to actin filaments and cell membrane or other proteins, we investigated their role in phagocytosis, cytokine production and antigen presentation. Phagocytosis and killing of bacteria were not affected in Myo1e-/- macrophages. However, MYO1e plays a role in chemokine secretion and antigen presentation processes. MCP1 (CCL2) release was selectively increased in Myo1e-deficient MØ and dendritic cells (DC), while cytokine secretion was unaffected. Furthermore, macrophages and DCs lacking MYO1e showed lower levels of MHC-II on the cell surface. However, mRNA levels of CCL2 and of MHC-II were unaltered. These data suggest a role for MYO1e in the transport of selected chemokines and of MHC-II molecules to the cell surface. MHC-II-restricted antigen presentation assays revealed an impaired capacity of macrophages and DC lacking MYO1e to stimulate antigen-specific T cells, suggesting that the reduced MHC-II expression is functionally relevant.
Taken together, in this study first a quantitative image analysis method was developed which allows the unbiased, robust and efficient investigation of the macrophage spreading response. Combination of this method with siRNA knockdown of selected cytoskeleton-associated phosphoproteins led to the identification of MYO1e and MYO1f as regulators of macrophage spreading. Furthermore, we identified MYO1e in MØ and DC to be essential for the intracellular transport of CCL2 and MHC-II to the cell surface and for optimal stimulation of antigen-specific CD4 T cells.
The interim reporting process provides decision-useful information to investors and market participants. However the legal circumstances of external interim auditor reviews differ worldwide. A mandatory review rule in the US as opposed to a contrary decision of the German legislator raises the question of the cost-benefit-relation of auditor reviews. Using a German sample of 1,023 firm-year observations from 2007 to 2010, I extract the costs and the benefits of voluntary semi-annual reviews. The unique German legal environment makes it possible to split the cost effect of a review in the price effect (included in audit-related fees) and a possible reduction of audit fees resulting from an improved year-around audit process. I observe a significant increase of audit and audit-related fees of around 14.5% (total fee effect). Additionally, the study provides evidence on declining audit fees for reviewed firms as compared to a matched sample of non-reviewed firms. The effect of an interim review on quarterly earnings quality – using discretionary accruals as an earning management proxy – shows no significant influence.
This study investigates the effect of the error announcement risk on the demand for voluntary interim auditor reviews. Material changes in the German legal environment in 2007 introduced an enforcement system for semi-annual financial reports. The demand for voluntary semi-annual reviews increased significantly from 0.8% in 2006 to 14.6% in 2007 and increased further to 19.5% until 2010 for a sample of 1,278 firm-year observations. This study addresses the question whether the enforcement structure and the resulting error announcement risk exposure have an influence on voluntary external monitoring. After controlling for agency costs, the corporate governance structure, and selected review cost factors, results of a logistic regression analysis show a positive influence of error announcement risk on the likelihood of engaging an auditor to review the semi-annual interim report. The findings contribute to the literature by demonstrating that the quality of the enforcement system and the risk of error findings influence the review decision of the board of directors positively.
In 2004 German legislation established the Financial Reporting Enforcement Panel. In 147 cases since then, the panel has ordered the announcement of errors in previously disclosed and audited financial statements of German firms. We use this unique dataset to evaluate the consequences of increasing earnings management over time on enforcement releases and their recognition in audit fees. Ettredge et al. (2010) provide evidence on a phenomenon called ‘balance sheet bloat’ that is due to income increasing earnings management and later influences the disclosure of misstated financial statements. Thus, the evidence of earnings management recognition in audit fees (Abbott et al. 2006) and the hypothesis of future information content in fees by Stanley (2011) leads us to hypothesize that auditors recognize increasing audit risk in audit fees before the enforcement process starts. We extend related earnings management and audit fee literature by modeling the development of earnings management within the misstatement firms and systematically link it to auditor reactions. We find significant predictive power of different commonly used accrual measures for enforcement releases in the period prior and up to the misstatement period. In this period of time, we also observe an audit fee increase, e.g. the recognition of increased audit risk. We investigate an audit fee effect after the misstatement period but find no significant relation.
Pulse-Sequence Approaches for Multidimensional Electronic Spectroscopy of Ultrafast Photochemistry
(2014)
Observing chemical reactions in real time with femtosecond laser pulses has evolved into a very popular field of research since it provides fascinating insights into the nature of photochemical transformations. Nevertheless, many photochemical reactions are still too complex for which reason the underlying mechanisms and all engaged species cannot be identified thoroughly. In these cases, conventional time-resolved spectroscopy techniques reach their technical limits and advanced approaches are required to follow the conversion of reactants to their products including all reaction intermediates.
The aim of this work was therefore the development of novel methods for ultrafast spectroscopy of photoreactive systems. Though the concept of coherent multidimensional spectroscopy has so far exclusively been used to explore photophysical phenomena, it also offers great potential for the study of photochemical processes due to its capability of extracting spectroscopic information along several frequency dimensions. This allows resolving the photochemical connectivity between various interconvertible molecular species with ultrafast temporal resolution on the basis of their absorption and emission properties as the spectral correlations are explicitly visualized in the detected spectra.
The ring-open merocyanine form of the photochromic compound 6-nitro BIPS was studied in Chap. 4 of this work. Merocyanines and their associated ring-closed spiropyrans are promising candidates for future applications as, for instance, molecular electronics or optical data storage due to their unique property of being switchable between two stable congurations via light illumination. Transient absorption with sub-50 fs temporal resolution and broadband probing was employed to characterize the photodynamics of this system with variable excitation wavelengths. Using global data analysis, it could be inferred that two different merocyanine isomers with differing excited-state lifetimes exist in solution. These isomers differ in the cis/trans conguration in the last bond of the methine bridge. The minority of isomers exist in the all-trans conguration (TTT) while the isomer with a cis conguration of the third dihedral angle (TTC) is dominant. A characteristic band, detected after long pump-probe delays, was attributed to the unidirectional cis->trans photoisomerization reaction of the TTC to the TTT form. The quantum yield of the reaction was estimated to be (18+-4) %. In addition, pronounced coherent vibrational wave-packet oscillations were observed and it was concluded that these signatures are related to the product formation.
Coherent two-dimensional electronic spectroscopy was successfully implemented using a partially collinear pump-probe beam geometry in combination with a femtosecond pulse shaper. The use of a whitelight probe continuum enabled us to probe contributions far-off the diagonal over the complete visible range. By properly adjusting the relative phase between the first two laser pulses with the pulse shaper, the principle of phase-cycling was explained and it was demonstrated that the measurement can be carried out in the so-called "rotating frame" in which the observed frequencies detected during the coherence time are shifted to lower values. It was shown that these concepts allow the extraction of the desired background-free photon echo while the amount of necessary data points is highly reduced.
In order to put our proposal of multidimensional spectroscopy of photoreactive systems into practice, third-order two- and three-dimensional spectroscopy was then employed for an in-depth analysis of a photoreactive process, in which the photoisomerization of 6-nitro BIPS served as a model system. The measured two-dimensional spectra revealed the cis->trans photoisomerization after long population times. By collecting a large data set of two-dimensional spectra for short population times and by applying a Fourier transform along the population time axis, the third-order three-dimensional spectrum was obtained. The novelty of this approach compared to coherent two-dimensional spectroscopy is the introduction of a third axis associated with the vibrational frequencies of the molecular system. In this way, the formation of the reaction product was evidenced and it was shown that the product is formed in its first excited singlet state within 200 fs after excitation. This method hence visualizes the photochemical connections between different reactive molecular species in an intuitive manner and further exposes the normal modes connecting reactant and product. Such conclusions cannot be drawn with conventional third-order techniques such as transient absorption since they are
not capable of capturing the full third-order response, but only a subset of it. The reaction mechanism and the role of the observed vibrational modes were uncovered by comparing the experimental data with the results of high-level quantum-chemical calculations performed by our collaborators in the group of Prof. B. Engels from the
theoretical chemistry department at the University of Würzburg. Specific calculated molecular normal modes could be assigned to the experimentally observed vibrational frequencies and potential energy surfaces of the electronic ground state and of the first excited state were computed. The technique implemented in this chapter is general and is applicable for the time-resolved analysis of a wide range of chemical reaction networks.
In the first part of Chap. 5, coherent two-dimensional spectroscopy was employed to track the reaction paths of the related 6,8-dinitro BIPS after S1 excitation. Several differences to the photochemical properties of 6-nitro BIPS were found. From the 2D spectra, the cis-trans isomerization between the two merocyanine isomers could be excluded as a major reaction path for this compound. To explore the dynamics after reexcitation to higher-lying electronic states, pump-repump-probe spectroscopy was implemented and the formation of a new species, a radical cation, was observed. To identify the precursor isomer, triggered-exchange two-dimensional spectroscopy, a fifth-order technique previously only available in the infrared regime for vibrational transitions, was implemented for the first time for electronic excitations in the visible. This approach combines the properties of the pump-repump-probe technique with the potential of coherent two-dimensional spectroscopy. It correlates the absorption frequency of a reactive molecular species with the emission signatures of the product formed from this species after an additional absorption of a photon. Using this method, it was unambiguously proven that only the TTC isomer reacts to the radical cation thus forming the precursor species of the reaction. Electronic triggered-exchange two-dimensional spectroscopy is hence another improved technology for time-resolved spectroscopy with applications in the study of multistep photoreactions and higher-lying electronic states. While in the two preceding chapters third- and fifth-order experiments were discussed that neglect the vectorial character of light-matter interactions, Chap. 6 focused on a novel theoretical formalism enabling the description of light fields optimized for polarization-sensitive higher-order nonlinearities. This formalism is based on the von Neumann time-frequency representation of shaped femtosecond laser pulses which permits the definition of multipulse sequences on a discrete time-frequency lattice. Hence, not only the temporal spacing between subpulses is adjustable, but also the center frequencies may be adapted such that they fit the experimental requirements. This method was generalized to the description of pulse sequences with time-varying polarization states. It was shown that by using this description, the polarization ellipticity, orientation angle, relative phase and intensity, and the time-frequency location of each subpulse is explicitly controllable. The accuracy of the transformations from Fourier space to von Neumann domain and vice versa was demonstrated. Moreover, a strict accordance between the von Neumann polarization parameters with the conventional parameters in time domain was found for well separated subpulses. A potential future application of this approach is polarization-sensitive multidimensional spectroscopy in which hidden cross peaks may be isolated by defining the pulses in the von Neumann picture with suitable polarization sequences. This method could also be used in quantum control experiments in which the polarization of the light field is used as a major control knob.
This thesis summarizes our efforts to open the field of femtochemistry to the concept of coherent multidimensional electronic spectroscopy. Making use of femtosecond pulse shaping, sub-50 fs temporal resolution, broadband spectral probing, higher-order nonlinearities, and new types of laser pulse descriptions, the presented methods might stimulate further future advancements in this research area.
The Notch signaling pathway is crucial for mammalian heart development. It controls cell-fate decisions, coordinates patterning processes and regulates proliferation and differentiation. Critical Notch effectors are Hey bHLH transcription factors (TF) that are expressed in atrial (Hey1) and ventricular (Hey2) cardiomyocytes (CM) and in the developing endocardium (Hey1/2/L). The importance of Hey proteins for cardiac development is demonstrated by knockout (KO) mice, which suffer from lethal cardiac defects, such as ventricular septum defects (VSD), valve defects and cardiomyopathy. Despite this clear functional relevance, little is known about Hey downstream targets in the heart and the molecular mechanism by which they are regulated.
Here, I use a cell culture system with inducible Hey1, Hey2 or HeyL expression to study Hey target gene regulation in HEK293 cells, in murine embryonic stem cells (ESC) and in ESC derived CM. In HEK293 cells, I could show that genome wide binding sites largely overlap between all three Hey proteins, but HeyL has many additional binding sites that are not bound by Hey1 or Hey2. Shared binding sites are located close to transcription start sites (TSS) where Hey proteins preferentially bind to canonical E boxes, although more loosely defined modes of binding exist. Additional sites only bound by HeyL are more scattered across the genome. The ability of HeyL to bind these sites depends on the C-terminal part of the protein. Although there are genes which are differently regulated by HeyL, it is unclear whether this regulation results from binding of additional sites by HeyL.
Additionally, Hey target gene regulation was studied in ESC and differentiated CM, which are more relevant for the observed cardiac phenotypes. ESC derived CM contract in culture and are positive for typical cardiac markers by qRT PCR and staining. According to these markers differentiation is unaffected by prolonged Hey1 or Hey2 overexpression. Regulated genes are largely redundant between Hey1 and Hey2. These are mainly other TF involved in e.g. developmental processes, apoptosis, cell migration and cell cycle. Many target genes are cell type specifically regulated causing a shift in Hey repression of genes involved in cell migration in ESC to repression of genes involved in cell cycle in CM.
The number of Hey binding sites is reduced in CM and HEK293 cells compared to ESC, most likely due to more regions of dense chromatin in differentiated cells. Binding sites are enriched at the proximal promoters of down-regulated genes, compared to up-or non-regulated genes. This indicates that up-regulation primarily results from indirect effects, while down-regulation is the direct results of Hey binding to target promoters. The extent of repression generally correlates with the amount of Hey binding and subsequent recruitment of histone deacetylases (Hdac) to target promoters resulting in histone H3 deacetylation.
However, in CM the repressive effect of Hey binding on a subset of genes can be annulled, likely due to binding of cardiac specific activators like Srf, Nkx2-5 and Gata4. These factors seem not to interfere with Hey binding in CM, but they recruit histone acetylases such as p300 that may counteract Hey mediated histone H3 deacetylation. Such a scenario explains differential regulation of Hey target genes between ESC and CM resulting in gene and cell-type specific regulation.
Routing is one of the most important issues in any communication network. It defines on which path packets are transmitted from the source of a connection to the destination. It allows to control the distribution of flows between different locations in the network and thereby is a means to influence the load distribution or to reach certain constraints imposed by particular applications. As failures in communication networks appear regularly and cannot be completely avoided, routing is required to be resilient against such outages, i.e., routing still has to be able to forward packets on backup paths even if primary paths are not working any more.
Throughout the years, various routing technologies have been introduced that are very different in their control structure, in their way of working, and in their ability to handle certain failure cases. Each of the different routing approaches opens up their own specific questions regarding configuration, optimization, and inclusion of resilience issues. This monograph investigates, with the example of three particular routing technologies, some concrete issues regarding the analysis and optimization of resilience. It thereby contributes to a better general, technology-independent understanding of these approaches and of their diverse potential for the use in future network architectures.
The first considered routing type, is decentralized intra-domain routing based on administrative IP link costs and the shortest path principle. Typical examples are common today's intra-domain routing protocols OSPF and IS-IS. This type of routing includes automatic restoration abilities in case of failures what makes it in general very robust even in the case of severe network outages including several failed components. Furthermore, special IP-Fast Reroute mechanisms allow for a faster reaction on outages. For routing based on link costs, traffic engineering, e.g. the optimization of the maximum relative link load in the network, can be done indirectly by changing the administrative link costs to adequate values.
The second considered routing type, MPLS-based routing, is based on the a priori configuration of primary and backup paths, so-called Label Switched Paths. The routing layout of MPLS paths offers more freedom compared to IP-based routing as it is not restricted by any shortest path constraints but any paths can be setup. However, this in general involves a higher configuration effort.
Finally, in the third considered routing type, typically centralized routing using a Software Defined Networking (SDN) architecture, simple switches only forward packets according to routing decisions made by centralized controller units. SDN-based routing layouts offer the same freedom as for explicit paths configured using MPLS. In case of a failure, new rules can be setup by the controllers to continue the routing in the reduced topology. However, new resilience issues arise caused by the centralized architecture. If controllers are not reachable anymore, the forwarding rules in the single nodes cannot be adapted anymore. This might render a rerouting in case of connection problems in severe failure scenarios infeasible.
In this work the synthesis of dendritic macromolecules and small redox cascades was reported and studies of their energy and electron transfer properties discussed.
The chromophores in the dendrimers and the redox cascades are linked via triazoles, which were built up by CuAAC. Thereby, a synthetic concept based on building blocks was implemented, which allowed the exchange of all basic components. Resulting structures include dendrimers composed exclusively of TAAs (G1–G3), dendrimers with an incorporated spirobifluorene core (spiro-G1 and spiro-G2) and the donor-acceptor dendrimer D-A-G1, in which the terminal groups are exchanged by NDIs.
Furthermore, a series of model compounds was synthesised in order to achieve a better understanding of the photophysical processes in the dendrimers.
A modification of the synthetic concept for dendrimers enabled the synthesis of a series of donor-acceptor triads (T-Me, T-Cl and T-CN) consisting of two TAA donors and one NDI acceptor unit. The intermediate TAA chromophore ensured a downhill redox gradient from the NDI to the terminal TAA, which was proved by cyclic voltammetry measurements. The redox potential of the intermediate TAA was adjusted by different redox determining substituents in the “free” p-position of the TAA. Additionally, two dyads (Da and Db) were synthesised which differ in the junction of the triazole to the TAA or the NDI, respectively. In these cascades a nodal-plane along the N-N-axes in the NDI and a large twist angle between the NDI and the N-aryl substituent guaranteed a small electronic coupling.
The photophysical investigations of the dendrimers focused on the homo-energy transfer properties in the TAA dendrimers G1–G3. Steady-state emission spectroscopy revealed that the emission takes place from a charge transfer state. The polar excited state resulted in a strong Stokes shift of the emission, which in turn led to a small spectral overlap integral between the absorption of the acceptor and the emission of the donor in the solvent relaxed state. According to the Förster theory, the overlap integral strongly determines the energy transfer rate. Fluorescence up-conversion measurements showed a strong and rapid initial fluorescence anisotropy decay and a much slower decrease on the longer time scale. The experiment revealed a fast energy transfer in the first 2 ps followed by a much slower energy hopping. Time resolved emission spectra (TRES) of the model compound M indicated a solvent relaxation on the same time scale as the fast energy transfer.
The Förster estimation of energy transfer rates in G1 explains fast energy transfer in the vibrotionally relaxed state before solvent relaxation starts. Thereby, the emission spectrum of G1 in cyclohexane served as the time zero spectrum. Thus, solvent relaxation and fast energy transfer compete in the first two ps after excitation and it is crucial to discriminate between energy transfer in the Franck-Condon and in the solvent relaxed state. Furthermore, this finding demonstrates that fast energy transfer occurs even in charge transfer systems where a large Stokes shift prevents an effective spectral overlap integral if there is a sufficient overlap integral in before solvent relaxation.
Energy transfer upon excitation was also observed in the spiro dendrimers spiro-G1 and spiro-G2 and identified by steady-state emission anisotropy measurements. It was assumed that the energy in spiro-G1 is completely distributed over the entire molecule while the energy in spiro-G2 is probably distributed over only one individual branch. This finding was based on a more polarised emission of spiro-G2 compared to spiro-G1. This issue has to be ascertained by e.g. time resolved emission anisotropy measurements in further energy transfer studies.
Concerning the electron transfer properties of TAA-triazole systems the radical cations of G1–G2, spiro-G1 and spiro-G2 and of the model compound M were investigated by steady-state absorption spectroscopy. Experiments showed that the triazole bridge exhibits small electronic communication between the adjacent chromophores but still possesses sufficient electronic coupling to allow an effective electron transfer from one chromophore to the other.
Due to the high density of chromophores, their D-A-D structure and their superficial centrosymmetry, the presented dendrimers are prospective candidates for two-photon absorption applications.
The dyads, triads and the donor-acceptor dendrimer D-A-G1 were investigated regarding their photoinduced electron transfer properties and the effects that dominate charge separation and charge recombination in these systems.
The steady-state absorption spectra of all cascades elucidated a superposition of the absorption characteristics of the individual subunits and spectra indicated that the chromophores do not interact in the electronic ground state.
Time resolved transient absorption spectroscopy of the cascades was performed in the fs- and ns-time regime in MeCN and toluene as solvent. Measurements revealed that upon with 28200 cm-1 (355) nm and 26300 cm-1 (380 nm), respectively, an electron is transferred from the TAA towards the NDI unit yielding a CS state. In the triads at first a CS1 state is populated, in which the NDI is reduced and the intermediate TAA1 is oxidised. Subsequently, an additional electron transfer from the terminal TAA2 to TAA1 led to the fully CS2 state. Fully CS states of the dyads and triads exhibit lifetimes in the ns-time regime. In contrast for Db in MeCN, a lifetime of 43 ps was observed for the CS state together with the population of a 3NDI state. The signals of the other CS states decay biexponentially, which is a result of the presence of the 1CS and the 3CS states. While magnetic field dependent measurements of Db did not show an effect due to the large singlet-triplet splitting, T-CN exhibited a strong magnetic field dependence which is an evidence for the 1CS/3CS assignment. Further analysis of the singlet-triplet dynamics are required and are currently in progress.
Charge recombination occurred in the Marcus inverted region for compounds solved in toluene and in the Marcus normal region for MeCN as solvent. However, a significant inverted region effect was observed only for Db. Triads are probably characterised by charge recombination rates in the inverted and in the normal region near to the vertex of the Marcus parabola. Hence the inverted region effect is not pronounced and the rate charge recombination rates are all in the same magnitude. However, compared to the charge recombination rate of Db the enlarged spatial distance between the terminal TAA and the NDI in the fully CS2 states in the triads resulted in reduced charge recombination rates by ca. one order of magnitude.
More important than a small charge recombination rate is an overall lifetime of the CS states and this lifetime can significantly be enhanced by the population of the 3CS state. The reported results reveal that a larger singlet-triplet splitting in the dyads led to a CS state lifetime in the us time regime while a lifetime in the ns-time regime was observed in cases of the triads. Moreover, the singlet-triplet splitting was found to be solvent dependent in the triads, which is a promising starting point for further investigations concerning singlet-triplet splitting.
The donor-acceptor dendrimer D-A-G1 showed similar characteristics to the dyads. The generation of a CS state is assumed due to a clear NDI radical anion band in the transient absorption spectrum. Noteworthy, the typical transient absorption band of the TAA radical cation is absent for D A-G1 in toluene. Bixon-Jortner analysis yielded a similar electronic coupling in D-A-G1 compared to the dyads. However, the charge recombination rate is smaller than of Db due to a more energetic CS state, which in the inverted region slows down charge recombination. In combination a singlet-triplet splitting similar to the dyads prolongs the CS state lifetime up to 14 us in diluted solution. Both effects result in an even better performance of D-A-G1 concerning energy conversion. D A-G1 is therefore a promising key structure for further studies on light harvesting applications. In a prospective study a second generation donor-acceptor dendrimer D-A-G2 might be an attractive structure accessible by “click reaction” of 13 and 8. D-A-G2 is expected to exhibit a downhill oriented gradient of CS states as assumed from the CV studies on G1–G3.
Within this study, the influence of the energetics of the bridge unit on electron transfer (ET) in an electrode-bridge-donor system was investigated in a monolayer environment.
This was realized by specifically designing molecules containing ferrocene carboxylic ester donors and hydroquinone derivatives as bridge units and by using a gold electrode as acceptor. The energetics of the hydroquinone derivatives was adjusted by synthetically varying its substituents with the intention of changing the ET speed and mechanisms. Thereby the choice of the substituents was based on the literature known half-wave potentials of similar solvated hydroquinone derivatives and successively confirming them by conducting cyclic voltammetry on the actual bridge units synthesized. Then, a synthetic pathway, which accommodated the limited stability of the integrated terminal ferrocene carbon acid ester, was developed and successfully employed. This was followed by developing a procedure for preparing very dense and highly ordered monolayers from the target molecules on self-made gold microelectrodes. For the electrochemical investigations, several electrolyte solutions were tested until one, which ensured low susceptibility of the characterization setup towards slight changes of the electrode arrangement and measurement parameters while ensuring sufficient stability of the monolayers, was found. Furthermore, a new, commercially available potentiostat was established for the impedance measurements, which reduced the stress on the monolayers during the electrochemical characterizations in comparison to the equipment used in many former studies. Regarding the determination of the ET rates, the data analysis protocol for the impedance measurements developed by Creager et al. was slightly adapted to allow analysis of the investigated monolayers despite their non-ideal behavior. In addition, the influence of changes to the electrical parameters of the impedance scans was investigated to minimize the error in the acquired data.
The electrochemical analysis of the monolayers by conducting cyclic voltammetry on MA, MB and MC prepared from A, B and C confirmed the accomplishment of near ideal surface coverage and exceptionally high order. The surface coverages of MB and MC were, probably due to the space filled by the substituents on their bridge units, slightly lower than those of MA. Furthermore, the shape of the redox waves of the ferrocene carboxylic acid redox center in the voltammogram of MA showed a broadening and a shift towards higher potentials, which was assigned to electrostatic interference of oxidized terminal redox centers due to the especially dense packing. However, in the voltammogram of MB, no sharp redox waves of the bridge units, as predicted by the analysis of preliminary monolayers of the same type with low surface coverage, were present. This was attributed to the different and varying microenvironment of the bridge units deeply embedded within high-density monolayers. In detail, the different degree of shielding of each individual bridge unit from counter ions and solvent molecules probably resulted in the half wave potential being shifted to varying higher potentials, thus preventing the formation of sharp redox waves. In addition, electrostatic effects of oxidized bridge units could have enhanced this effect. This leads to the conclusion that the half-wave potentials of fully solvated bridge units determined by the cyclic voltammetry are not suited to predict the energetics of the oxidized bridge states embedded within the prepared high density monolayers.
Finally, the monolayers were successfully analyzed by impedance spectroscopy, which showed that the ET rate of MA is slightly higher than that of MB, and both are higher than that of MC. All of the values were, according to literature, in the expected region considering the length and degree of conjugation of the backbone. However, this picture is relativized when considering the targeted energetic alignment of the bridge units. According to the predicted very small energy gap between the oxidized states of the donor and the bridge unit in MB, a domination of the hopping mechanism should have led to a several orders of magnitude higher ET rate than in MA and MC. That this was not the case was attributed to the underestimation of the energy of the oxidized bridge states by utilizing cyclic voltammetry of the fully solvated bridge units (see above). According to the small differences of the ET rates the superexchange process was assumed to be the dominating mechanism not only in MA and MC but also in MB. However, even when shifted, the predicted energetic order of the oxidized bridge states should have led to a moderately decreasing ET rate from MB over MA to MC. The reason for the actual ET rate in MA being slightly higher than in MB might be found in the electrostatic interference of the terminal redox centers in MA (see above).
In conclusion, the targeted model systems were prepared and the ET rates were successfully determined. However, the problems concerning the relative energetic positioning of the involved states within the dense monolayers prevented the specific alteration of the speed and mechanism of the ET. The reason for this can be probably found in the high density and order of the monolayers prepared within this work, which hamper the intrusion of the components of the electrolyte solutions. This various degree of stabilization for the individual bridge units by counter ions and solvent molecules leads to the energy of the oxidized bridge states being splitted and shifted towards higher potentials with respect to fully solvated bridge units. This effect might be further enhanced by electrostatics of neighboring already oxidized bridge states. All this makes the predetermination of the energetics of the embedded bridge units extremely difficult. On one hand, this behavior can be considered an obstacle and could probably be circumvented by designing molecules with bulky anchor groups and rigid molecular backbones, which would ensure perpendicular arrangement to the surface and full exposure of the bridge and terminal redox centers to the solvent molecules and counter ions. On the other hand, monolayers which completely embed integral redox centers might open up the opportunity to study the effects of microenvironments similar to those in solid state materials.
Regarding mixed valence compounds, the present study focuses on bistriarylamine radical cation F∙+, which contains the [3.3]paracyclophane bridge unit. The results were compared to the, except for the bridge units, identical literature known compounds G∙+ and N∙+ with [2.2]paracyclophane and p-xylene bridges respectively. This led to the conclusion that slightly different bridge units can induce substantial changes to the internal reorganization energy. This is especially noteworthy since it is usually believed that structural adaption limited to the redox centers taking part in the charge transfer dominates the internal reorganization energy. Furthermore, the application of the two-state Mulliken-Hush approach shows that compounds F∙+ and G∙+ have near identical couplings and similar thermal barriers. Confirmation of the latter finding as well as near identical thermal electron transfer rates for both compounds were provided via a cooperation project by Grampp et al. in which these values were directly extracted from temperature dependent electron paramagnetic resonance measurements. These results are quite unexpected since the “through-space” distances of the stacked pi-systems in the paracyclophane bridges differ significantly. They are well within the sum of the van der Waals radii in G∙+ and barely within them in compound F∙+. In addition, these findings weaken the common assumption of the ethylene bridges in G∙+ substantially adding to the electronic coupling, since then, in F∙+, due to its propylene linkers, the coupling should be substantially reduced. Finally, relying on the fact that the electronic couplings are only three times higher and the thermal electron transfer rates are only one order of magnitude higher for N∙+ than for compounds F∙+ and G∙+ shows that intermolecular electron transfer in solid state materials can remain efficient, if the interacting pi-systems stay within the sum of van der Waals radii of their carbons.
Concerning the donor-acceptor dyads, the current investigation centers on triarylamine-cyclophane-naphtalene diimide (TAA-CP-NDI) compounds which display almost complete photoinduced charge separation. Furthermore, their singlet charge separated states show lifetimes of hundreds of nanoseconds, which is rarely found in such simple dyads. In the present case they can be attributed to the particular amount of electronic coupling V (on the order of 100 cm^–1), which is brought about by incorporation of the smallest model systems for pi-stacks, the CPs, together with the nodes on the NDI lowest unoccupied molecular orbital, which electronically decouples the central NDI from its nitrogen substituents. In agreement with studies of [2.2]- and [3.3]paracyclophane bridged mixed valence compounds (see above), the cycolphane bridged dyads show very similar electronic coupling when dealing with ground state processes like charge recombination. However, when investigating excited state processes, like charge separation in the TAA-CP-NDI dyads, one has to bear in mind that the CP orbitals are involved in the formation of intermediate states that likely possess charge transfer character. In this case, the [2.2]paracyclophane bridge obviously induces a stronger coupling than the [3.3]paracyclophane. Another interesting property of the dyads studied here is the substantial population of the triplet charge separated (CS) state of ca. one third regarding both CS states, which is brought about by singlet-triplet interconversion from the singlet CS state. Thus, the triplet CS state with a lifetime of several microseconds acts as a kind of buffer for the CS state before recombining to the ground state and, thus, leads to distinctly prolonged overall lifetimes of the charge separated states. Thus it can be concluded that the intersystem crossing and charge recombination (CR) processes of the CS states are governed by a delicate balance of a large electronic coupling V and a large exchange interaction 2J (both with regard to systems containing a through-space pathway). The latter appears to be induced by second order interaction with a local triplet state lying close in energy to the CS state. This balance results in slow CR- and singlet-triplet- interconversion rates, which differ only by one order of magnitude. Compared to the many NDI containing dyads studied so far, these features of the dyads studied here are, to the best of our knowledge, unique. Especially the combination of high quantum yield of charge separation, long lifetimes and high energy of the charge separated state make the investigated systems interesting for practical applications. Furthermore, the presented unraveling of the underlying mechanisms is of substantial value for the future design of dyads for practical applications regarding the implementation and adjustment of these favorable properties.
The dissertation at hand focuses on the enforcement of accounting standards in Germany. The legal basis of the external enforcement of accounting standards in Germany was created by the „Bilanzkontrollgesetz” (Financial Reporting Enforcement Act) at the end of 2004. An enforcement mechanism was installed to enforce accounting standard compliance by regular reviews of disclosed financial statements. The system was established as implementation of EU guidelines. Since 2005, International Financial Reporting Standards (IFRS) shall be applied for consolidated financial statement of firms listed on a regulated market segment within the European Union (EU) (Regulation EC No. 1606/2002). Simultaneously to the harmonization of accounting standards, the EU fostered the standardization of enforcement systems to ensure compliance with international accounting standards. Par. 16 of the so-called “IAS Regulation” mandates the “Committee of European Securities Regulators” (CESR) to “develop a common approach to enforcement". Germany’s unique two-tiered system operates since July 2005; it involves the “Deutsche Pruefstelle fuer Rechnungslegung” (Financial Reporting Enforcement Panel), a newly established private organization primarily assigned to conduct the reviews. As the second tier, the „Bundesanstalt fuer Finanzdienstleistungsaufsicht” (Federal Financial Supervisory Authority) has the sovereign authority to order the publication of errors („error announcements“) and if necessary, to force the cooperation of firms in the review process.
The dissertation is structured as follows. A general introduction focuses on the theoretical background and the reasoning for the need of external enforcement mechanisms. The common approach to enforcement in the European Union is described. Building on this, the thesis consists of three individual essays that analyze three specific questions in the context of the enforcement of financial reporting standards in Germany.
The first paper focuses on the systematical evaluation of the information contained in 100 selected error announcements (from a total population of 151 evaluable announcements). The study finds that error announcements on average contain 3.64 single errors and 77% affect the reported profit. Relatively small as well as big, highly levered and rather unprofitable firms are overrepresented in the sample of misstatement firms. In a second step, the essay investigates the development of censured firms over time; the pre- and post-misstatement development of the firms in terms of balance sheet data, financial ratios and (real) earnings management are tracked. The analysis detects increasing leverage ratios and a decline in profitability over time. In the year of misstatement firms report large total and discretionary accruals, indicating earnings management. Compared to matched control firms, significant differences in profitability, market valuation, earnings management and real activities manipulations are observable. A major contribution of this first study is the examination of trends in financial data and (real) earnings management over a number of years surrounding misstatements as well as the elaboration of the distinction to non-misstating firms. The results show the meaning of the enforcement of IFRS for the quality of financial reporting to standard setters, policy makers, and investors in Germany.
The second paper examines the interrelation of enforcement releases, firm characteristics and earnings quality. Prior literature documents the correlation between underperformance in financial ratios and the probability of erroneous disclosure of financial statements; this study provides evidence for differences in characteristics between firms with enforcement releases and control firms as well as a broad sample of German publicly traded firms (4,730 firm-year observations). Furthermore, research affirms the connection of financial ratios to earnings quality metrics. The accuracy of financial information is considered to be correlated with its quality and therefore the differences in earnings quality between various sub-samples is examined. Overall, the results document the underperformance in important financial ratios as well as indicate an inferior earnings quality of firms subject to enforcement releases vis-a-vis the control groups. These results hold with regard to both different earnings quality specifications and different periods observed. This study appends the earnings quality discussion and contributes to develop a comprehensive picture of accounting quality for the unique institutional settings of Germany. The paper shows that a conjoint two-tier public and private enforcement system is effective and might be an adequate model for other countries. Implications for the regulation of corporate governance, the enforcement panel and the auditor are identified.
The third essay additionally considers the role of the auditor. The firms subject to error announcements are used to evaluate the consequences of increasing earnings management over time on enforcement releases and their recognition in audit fees. Prior literature provides evidence on a phenomenon called „balance sheet bloat” that is due to income increasing earnings management and later influences the disclosure of misstated financial statements. The evidence of earnings management recognition in audit fees and findings on the content of future information in audit fees leads to the hypothesis that auditors recognize increasing audit risk in fees before the enforcement process starts. The study extends related earnings management and audit fee literature by modeling the development of earnings management within the misstatement firms and systematically link it to auditor reactions. Significant predictive power of different commonly used accrual measures for enforcement releases in the period prior and up to the misstatement period are found by the study. In the same period of time an increase in audit fees, e.g. the recognition of increased audit risk, can be observed. A possible audit fee effect after the misstatement period is investigated, but no significant relation is obtained.
The dissertation closes with a summary of the main findings, a conclusion to the connection of the three essays as well as subsumption of findings in the accounting literature.
Large volumes of data are collected today in many domains. Often, there is so much data available, that it is difficult to identify the relevant pieces of information. Knowledge discovery seeks to obtain novel, interesting and useful information from large datasets.
One key technique for that purpose is subgroup discovery. It aims at identifying descriptions for subsets of the data, which have an interesting distribution with respect to a predefined target concept. This work improves the efficiency and effectiveness of subgroup discovery in different directions.
For efficient exhaustive subgroup discovery, algorithmic improvements are proposed for three important variations of the standard setting: First, novel optimistic estimate bounds are derived for subgroup discovery with numeric target concepts. These allow for skipping the evaluation of large parts of the search space without influencing the results. Additionally, necessary adaptations to data structures for this setting are discussed. Second, for exceptional model mining, that is, subgroup discovery with a model over multiple attributes as target concept, a generic extension of the well-known FP-tree data structure is introduced. The modified data structure stores intermediate condensed data representations, which depend on the chosen model class, in the nodes of the trees. This allows the application for many popular model classes. Third, subgroup discovery with generalization-aware measures is investigated.
These interestingness measures compare the target share or mean value in the subgroup with the respective maximum value in all its generalizations. For this setting, a novel method for deriving optimistic estimates is proposed. In contrast to previous approaches, the novel measures are not exclusively based on the anti-monotonicity of instance coverage, but also takes the difference of coverage between the subgroup and its generalizations into account. In all three areas, the advances lead to runtime improvements of more than an order of magnitude.
The second part of the contributions focuses on the \emph{effectiveness} of subgroup discovery. These improvements aim to identify more interesting subgroups in practical applications. For that purpose, the concept of expectation-driven subgroup discovery is introduced as a new family of interestingness measures. It computes the score of a subgroup based on the difference between the actual target share and the target share that could be expected given the statistics for the separate influence factors that are combined to describe the subgroup.
In doing so, previously undetected interesting subgroups are discovered, while other, partially redundant findings are suppressed.
Furthermore, this work also approaches practical issues of subgroup discovery: In that direction, the VIKAMINE II tool is presented, which extends its predecessor with a rebuild user interface, novel algorithms for automatic discovery, new interactive mining techniques, as well novel options for result presentation and introspection. Finally, some real-world applications are described that utilized the presented techniques. These include the identification of influence factors on the success and satisfaction of university students and the description of locations using tagging data of geo-referenced images.
Atherosclerosis is considered a chronic inflammatory disease of the arterial vessel wall which is not only modulated by innate and adaptive immune responses but also by factors of the blood coagulation system.
In general hypercoagulability seems to increase the development and progression of experimental atherosclerosis in mice on an atherogenic background. In addition, the great majority of coagulation proteins including coagulation factor XII (FXII) have been detected in early and advanced human atherosclerotic lesions supporting the cross-link between the coagulation system and atherosclerosis. Moreover, FXII has been detected in close proximity to macrophages, foam cells and smooth muscle cells in these lesions and has been demonstrated to be functionally active in human plaques. Although these data indicate that factor XII may play a role in atherogenesis a direct contribution of FXII to atherogenesis has not been addressed experimentally to date. Furthermore, clinical studies examining the function of FXII in vascular disease have yielded conflicting results.
Hence, in order to investigate the function of coagulation factor XII in atherosclerosis apolipoprotein E and FXII-deficient (F12\(^{-/-}\) apoE\(^{-/-}\)) mice were employed. Compared to F12\(^{+/+}\)apoE\(^{-/-}\) controls, atherosclerotic lesion formation was reduced in F12\(^{-/-}\)apoE\(^{-/-}\) mice, associated with diminished systemic T-cell activation and Th1-cell polarization after 12 weeks of high fat diet. Moreover, a significant decrease in plasma levels of complement factor C5a was evidenced in F12\(^{-/-}\)apoE\(^{-/-}\) mice. Interestingly, C5a increased the production of interleukin-12 (IL-12) in dendritic cells (DCs) and enhanced their capacity to trigger antigen-specific interferon-gamma (IFNγ) production in OTII CD4\(^+\) T cells in vitro. Importantly, a reduction in frequencies of IL-12 expressing splenic DCs from atherosclerotic F12\(^{-/-}\)apoE\(^{-/-}\) versus F12\(^{+/+}\)apoE\(^{-/-}\) mice was observed in vivo, accompanied by a diminished splenic Il12 transcript expression and significantly reduced IL-12 serum levels.
Consequently, these data reveal FXII to play an important role in atherosclerotic lesion formation and to promote DC-induced and systemic IL 12 expression as well as pro-inflammatory T-cell responses likely at least in part via the activation of the complement system.
In this work we wanted to investigate the role of NFATc1 in lymphocyte physiology and in pathological conditions (eg. psoriasis). NFATc1 is part of the signal transduction
pathways that regulates B cells activation and function. NFATc1 has different isoforms that are due to different promoters (P1 and P2), polyadenylation and alternative splicing. Moreover, we tried to elucidate the points of interactions between the NFAT and the NF-κB pathways in
activated B-cell fate. NFAT and NF-κB factors share several properties, such as a similar mode of induction and architecture in their DNA binding domain. We used mice which over-express a constitutive active version of NFATc1/α in their B cells with -or without- an ablated IRF4. IRF4 inhibits cell cycle progression of germinal center B cell-derived Burkitt’s lymphoma cells and
induces terminal differentiation toward plasma cells. Our experiments showed that a ‘double hit’ in factors affecting B cell activation (NFATc1 in this case) and late B cell Differentiation (IRF4 in this case) alter the development of the B cells, lead to increase in their numbers and increase in stimulation induced proliferation. Therefore, the overall picture indicates a link between these 2 genes and probable carcinogenic alterations that may occur in B cells.
We also show that in splenic B cells, c-Rel (of the NF-κB canonical pathway) Support the induction of NFATc1/αA through BCR signals. We also found evidence that the lack of NFATc1 affects the expression of Rel-B (of the NF-κB non-canonical pathway). These data suggest a tight interplay between NFATc1 and NF-κB in B cells, influencing the competence of B cells and their functions in peripheral tissues.
We also used IMQ-induced psoriasis-like inflammation on mice which either lack NFATc1 from B cell. Psoriasis is a systemic chronic immunological disease characterized
primarily by abnormal accelerated proliferation of the skin keratinocytes. In psoriasis, the precipitating event leads to immune cell activation. Our experiments showed that NFATc1 is needed for the development of psoriasis. It also showed that IL-10 is the link that enables NFAT
from altering the B cell compartment (eg Bregs) in order to affect inflammation. The important role of B cell in psoriasis is supported by the flared up psoriasis-like inflammation in mice that lack B cells. Bregs is a special type of B cells that regulate other B cells and T cells; tuning the immunological response through immunomodulatory cytokines.
Post-translational histone modifications (PTMs) such as methylation of lysine residues influence chromatin structure and function. PTMs are involved in different cellular processes such as DNA replication, transcription and cell differentiation. Deregulations of PTM patterns are responsible for a variety of human diseases including acute leukemia. DOT1 enzymes are highly conserved histone methyltransferases that are responsible for methylation of lysine 79 on histone H3 (H3K79). Most eukaryotes contain one single DOT1 enzyme, whereas African trypanosomes have two homologues, DOT1A and DOT1B, which methylate H3K76 (H3K76 is homologous to H3K79 in other organisms). DOT1A is essential and mediates mono- and di-methylations, whereas DOT1B additionally catalyzes tri-methylation of H3K76. However, a mechanistic understanding how these different enzymatic activities are achieved is lacking. This thesis exploits the fact that trypanosomes possess two DOT1 enzymes with different catalytic properties to understand the molecular basis for the differential product-specificity of DOT1 enzymes. A trypanosomal nucleosome reconstitution system was established to analyze methyltransferase activity under defined in vitro conditions. Homology modeling allowed the identification of critical residues within and outside the catalytic center that modulate product-specificity. Exchange of these residues transferred the product-specificity from one enzyme to the other and revealed regulatory domains adjacent to the catalytic center. This work provides the first evidence that few specific residues in DOT1 enzymes are crucial to catalyze methyl-state-specific reactions. These results have also consequences for the functional understanding of homologous enzymes in other eukaryotes.
Virulent Agrobacterium tumefaciens strains transfer and integrate a DNA region of the tumor-inducing (Ti) plasmid, the T-DNA, into the plant genome and thereby cause crown gall disease. The most essential genes required for crown gall development are the T-DNA-encoded oncogenes, IaaH (indole-3-acetamide hydrolase), IaaM (tryptophan monooxygenase) for auxin, and Ipt (isopentenyl transferase) for cytokinin biosynthesis. When these oncogenes are expressed in the host cell, the levels of auxin and cytokinin increase and cause cell proliferation. The aim of this study was to unravel the molecular mechanisms, which regulate expression of the agrobacterial oncogenes in plant cells. Transcripts of the three oncogenes were expressed in Arabidopsis thaliana crown galls induced by A. tumefaciens strain C58 and the intergenic regions (IGRs) between their coding sequences (CDS) were proven to have promoter activity in plant cells. These promoters possess eukaryotic sequence structures and contain cis-regulatory elements for the binding of plant transcription factors. The high-throughput protoplast transactivation (PTA) system was used and identified the Arabidopsis thaliana transcription factors WRKY18, WRKY40, WRKY60 and ARF5 to activate the Ipt oncogene promoter. No transcription factor promoted the activity of the IaaH and IaaM promoters, despite the fact that the sequences contained binding elements for type B ARR transcription factors. Likewise, the treatment of Arabidopsis mesophyll protoplasts with cytokinin (trans-zeatin) and auxin (1-NAA) exerted no positive effect on IaaH and IaaM promoter activity. In contrast, the Ipt promoter strongly responded to a treatment with auxin and only modestly to cytokinin. The three Arabidopsis WRKYs play a role in crown gall development as the wrky mutants developed smaller crown galls than wild-type plants. The WRKY40 and WRKY60 genes responded very quickly to pathogen infection, two and four hours post infection, respectively. Transcription of the WRKY18 gene was induced upon buffer infiltration, which implicates a response to wounding. The three WRKY proteins interacted with ARF5 and with each other in the plant nucleus, but only WRKY40 together with ARF5 increased activation of the Ipt promoter. Moreover, ARF5 activated the Ipt promoter in an auxin-dependent manner. The severe developmental phenotype of the arf5 mutant prevented studies on crown gall development, nevertheless, the reduced crown gall growth on the transport inhibitor response 1 (TIR1) tir1 mutant, lacking the auxin sensor, suggested that auxin signaling is required for optimal crown gall development. In conclusion, A. tumefaciens recruits the pathogen defense related WRKY40 pathway to activate Ipt expression in T-DNA-transformed plant cells. IaaH and IaaM gene expression seems not to be controlled by transcriptional activators, but the increasing auxin levels are signaled via ARF5. The auxin-depended activation of ARF5 boosts expression of the Ipt gene in combination with WRKY40 to increase cytokinin levels and induce crown gall development.
Neisseria gonorrhoeae is a human-specific pathogen that causes gonorrhea. It is defined as a super bacterium by the WHO due to the emergence of gonococci that are resistant to a variety of antibiotics and a rapidly increasing infection incidence. Genome-wide investigation of neisserial gene essentiality and novel virulence factors is urgently required in order to identify new targets for anti-neisserial therapeutics. To identify essential genes and new virulence factors, a high-density mutant library in N. gonorrhoeae MS11 was generated by in vitro transposon mutagenesis. The transposon library harbors more than 100,000 individual mutants, a density that is unprecedented in gonococcal research. Essential genes in N. gonorrhoeae were determined by enumerating frequencies of transposon insertion sites (TIS) with Illumina deep sequencing (Tn-seq). Tn-seq indicated an average distance between adjacent TIS of 25 bp. Statistical analysis unequivocally demonstrated 781 genes that were significantly depleted in TIS and thus are essential for Neisseria survival. A subset of the genes was experimentally verified to comprise essential genes and thus support the outcome of the study. The hereby identified candidate essential genes thus may constitute excellent targets for the development of new antibiotics or vaccines.
In a second study, the transposon mutant library was applied in a genome-scale “negative-selection strategy” to identify genes that are involved in low phosphate-dependent invasion (LPDI). LPDI is dependent on the Neisseria porin subtype PorBIA which acts as an epithelial cell invasin in absence of phosphate and is associated with severe pathogenicity in disseminated gonococcal infections (DGI). Tn-seq demonstrated 98 genes, which were involved in adherence to host cells and 43 genes involved in host cell invasion. E.g. the hypothetical protein NGFG_00506, an ABC transporter ATP-binding protein NGFG_01643, as well as NGFG_04218 encoding a homolog of mafI in N. gonorrhoeae FA1090 were experimentally verified as new invasive factors in LPDI. NGFG_01605, a predicted protease, was identified to be a common factor involved in PorBIA, Opa50 and Opa57-mediated neisserial engulfment by the epithelial cells. Thus, this first systematic Tn-seq application in N. gonorrhoeae identified a set of previously unknown N. gonorrhoeae invasive factors which demonstrate molecular mechanisms of DGI.
Besides caloric restriction, a diet rich in fruits and vegetables is believed to delay the ageing process thus providing a powerfull tool in preventive medicine. To investigate underlying interactions between food ingredients and genes simple models, such as the red flour beetle Tribolium castaneum, appear especially constructive. Here we show that 1 % of a grape seed extract containing 30 % of procyanidins, significantly increases the survival of T. castaneum at 42 °C when added to flour as a dietary source. The beneficial effects of grape seed extract could not be reproduced by supplementing flour with single catechins of which the oligomeric procyanidins consist. We identified previously stress resistance genes responsible for a survival extension by dietary ingredients and show here by the use of RNA-interference that a knockdown of transcripts encoding homologues of Nrf-2 or Jnk-1 block the effects of grape seed extract on survival. Interestingly, grape seed extract under knockdown of Foxo-1 caused a significant survival reduction, stressing the hormetic response as underlying the survival extension by the dietary interventions.
In conclusion, our studies provide evidence that a procyanidin-rich extract is able to extend the survival of the model organism T. castaneum. Catechin monomers, however, appear not to mediate the effects. The active ingredients, moreover, need the presence of stress resistance factors, and here especially of Foxo-1, in order to promote their preventive activities with regard to degenerations.
More warning Advanced Driver Assistance Systems (ADAS) will be integrated into the European vehicles in the coming years, due to the ongoing progress on the way to automated driving and Euro NCAP requirements. Furthermore, upcoming technologies like Car-2-X will extend the sensory horizon of ADAS and enable the possibility to warn drivers earlier against various hazards than today. Regarding this progress, increasing numbers of different ADAS warnings will be communicated to the driver. In this context, an important question is how multiple ADAS warnings can be integrated into the Human Machine Interface (HMI) of vehicles and which warning elements are needed to ensure warning acceptance, efficiency and understandability seen from the driver’s point of view.
Two driving simulator studies were conducted and the effects of specific warning elements examined to develop a concept for the integration of upcoming warning ADAS, which focuses on early collision warnings. The implemented early warnings were defined with a warning onset of approximately two seconds before the last possible warning onset. Main questions were whether and how drivers profit from warning direction cues and/or warning object cues for their response to a hazard, and how these cues affect the acceptance of an integrated warning ADAS approach. Furthermore, it was analyzed whether a generalized warning can be used for a cluster of different ADAS concerning the group “warning of collisions”. Therefore critical scenarios in rural and urban surroundings were evaluated, including frontal and lateral (intersections) scenarios. Unnecessary warnings and false alarms have also been taken into account.
The results indicate that early warning direction cues have a high potential to assist drivers with an ADAS warning cluster which covers warning of collisions. In contrast, warning object cues seem to be less important for the drivers’ performance and acceptance regarding early collision warnings. According to these findings, this thesis provides recommendations which warning elements should be included into future ADAS warnings in favor of an integrated warning approach.
Since more than two centuries naturalists are fascinated by the profound changes in biodiversity observed along climatic gradients. Although the theories explaining changes in the diversity and the shape of organisms along climatic gradients belong to the foundations of modern ecology, our picture on the spatial patterns and drivers of biodiversity is far from being complete. Ambiguities in theory and data are common and past work has been strongly concentrated on plants and vertebrates. In the last two decades, interest in the fundamental processes structuring diversity along climatic gradients gained new impetus as they are expected to improve our understanding about how ecosystems will respond to global environmental changes. Global temperatures are rising faster than ever before; natural habitats are transformed into agricultural land and existing land use systems get more and more intensified to meet the demands of growing human populations. The fundamental shifts in the abiotic and biotic environment are proclaimed to affect ecosystems all over the world; however, precise predictions about how ecosystems respond to global changes are still lacking. We investigated diversity, traits and ecosystem services of wild bees along climate and land use gradients on Mount Kilimanjaro (Tanzania, East Africa). Wild bees play a major role in ecosystems, as they contribute to the reproduction and performance of wild and crop plants. Their responsiveness to environmental changes is therefore of high ecological and economic importance.
Temperature and energy resources have often been suggested to be the main determinants of global and local species richness, but the mechanisms behind remain poorly understood. In the study described in chapter II we analyzed species richness patterns of wild bees along climate and land use gradients on Mount Kilimanjaro and disentangled the factors explaining most of the changes in bee richness. We found that floral resources had a weak but significant effect on pollinator abundance, which in turn was positively related to species richness. However, temperature was the strongest predictor of species richness, affecting species richness both directly and indirectly by positively influencing bee abundances. We observed higher levels of bee-flower-interactions at higher temperatures, independently of flower and bee abundances. This suggests that temperature restricts species richness by constraining the exploitation of resources by ectotherms. Current land use did not negatively affect species richness. We conclude that the richness of bees is explained by both temperature and resource availability, whereas temperature plays the dominant role as it limits the access of ectotherms to floral resources and may accelerate ecological and evolutionary processes that drive the maintenance and origination of diversity.
Not only species numbers, but also morphological traits like body size are expected to be shaped by both physiological and energetic constraints along elevational gradients. Paradoxically, Bergmann´s rule predicts increases of body sizes in cooler climates resulting from physiological constraints, while species-energy theory suggests declines in the mean body size of species caused by increased extinction probabilities for large-bodied species in low-energy habitats. In chapter III we confronted this ambiguity with field data by studying community-wide body size variation of wild bees on Mt. Kilimanjaro. We found that along a 3680 m elevational gradient bee individuals became on average larger within species, while large species were increasingly absent from high-elevational communities. This demonstrates, on the one hand, how well-established, but apparently contrasting ecological theories can be merged through the parallel consideration of different levels of biological organization. On the other hand it signals that the extinction risk in the course of environmental change is not equally distributed among species within a community.
Land use intensification is known to threaten biodiversity, but the consequences for ecosystem services are still a matter of debate. In chapter IV, we experimentally tested the single and combined contributions of pest predators and pollinators to coffee production along a land use intensification gradient on Mount Kilimanjaro. We found that pest predation increased fruit set by on average 9%, while pollination increased fruit weight of coffee by on average 7.4%. Land use had no significant effect on both ecosystem services. However, we found that in coffee plantations with most intensified land use, pollination services were virtually exclusively provided by the honey bee (Apis mellifera). The reliance on a single pollinator species is risky, as possible declines of that species may directly lower pollination services, resulting in yield losses. In contrast, pollination services in structurally complex homegardens were found to be provided by a diverse pollinator community, increasing the stability of pollination services in a long term.
We showed that on Mount Kilimanjaro pollinator communities changed along elevational gradients in terms of species richness (chapter II) and trait composition (chapter III). Temperature and the temperature-mediated accessibility of resources were identified as important predictors of these patterns, which contributes to our fundamental understanding about the factors that shape ectothermic insect communities along climatic gradients. The strong temperature-dependence of pollinators suggests that temperature shifts in the course of global change are likely to affect pollinator communities. Pollinators might either profit from rising temperatures, or shift to higher elevations, which could result in related biotic attrition in the lowland with consequences for the provision of ecosystem services in cropping systems. Up to now, land use intensification had no significant impact on the diversity of pollinator communities and their ecosystem services. Pollinators might profit from the strong landscape heterogeneity in the region and from the amount of flower resources in the understory of cropping systems. However,progressing homogenization of the landscape and the pronounced application of pesticides could result in reduced diversity and dominance of single species, as we already found in sun coffee plantations. Such shifts in community compositions could threaten the stability of ecosystem services within cropping and natural systems in a long term.
Aurora B is a mitotic kinase that is essential for cell division. Because it is mutated or overexpressed in a range of cancer types, it has been suggested as a novel therapeutic target. Currently chemical inhibitors against Aurora B are in various phases of clinical trials for treatment of solid tumors and leukemia. Information regarding the molecular requirements for the reported phenotypes of Aurora B inhibition such as cell cycle arrest, activation of the tumor suppressor p53 and its target p21 are not well understood.
In this study, I investigated the requirements for p21 induction after Aurora B inhibition. I found that p38 is phosphorylated and activated when Aurora B is inhibited. Experiments with chemical inhibitors against p38 indicate that p38 is required for p21 induction and cell cycle arrest in response to Aurora B inhibition. p53 induction after impairment of Aurora B function and the recruitment of p53 to its binding site in the p21 gene promoter occur independently of p38 signaling. Instead, I found that p38 is required for the enrichment of the elongating RNA Polymerase II in the coding region of the p21 gene. Furthermore, p38 is required for formation of the full-length p21 mRNA transcript. These data indicate that p38 promotes the transcriptional elongation of p21 gene in response to Aurora B inhibition. In further experiments I could show that the p21 causes cell cycle arrest due to a decrease in E2F-dependent transcription by promoting the dephosphorylation of the retinoblastoma protein.
Using synchronized cells I could show that the induction of p21 in response to Aurora B inhibition requires transition through an aberrant mitosis and does not occur in cells that are arrested in interphase. Interestingly, p38, p53 and p21 are already induced by partial inhibition of Aurora B, which results in aneuploidy but not in cytokinesis failure and in tetraploidy. This supports the notion that activation of p38-p53-p21 signaling correlates with aneuploidy but not with tetraploidy or binucleation. Partial inhibition of Aurora B also leads to increased generation of reactive oxygen species (ROS), which are required for the activation of p38, p21 and cell cycle arrest. Based on these observations I propose the following model: Inhibition of Aurora B leads to chromosome missegregation resulting in aneuploidy. This results in increased generation of ROS (reactive oxygen species) possibly through proteotoxic stress caused by an imbalance of protein synthesis in aneuploid cells. ROS triggers the activation of p38, which then stimulates the transcriptional elongation of p21 resulting in cell cycle arrest.
Aneuploidy, proteotoxic stress and oxidative stress are hallmarks of cancer cells. Based on my results reported in this study, I suggest that the combination of Aurora B inhibitors with drugs that specifically target aneuploid cells might be a novel strategy for cancer therapy, as this is a lethal combination for proliferation of cancer cells.
Leptoquarks are hypothetical particles that attempt to explain the coincidental similarities between leptons and quarks included in SM. Their exact properties vary between different theoretical models, and there are no strong theoretical constraints on their possible mass values. They can possibly be produced from particle
collisions, and there have already been searching efforts at previous collider experiments. Their presence have yet been observed, and this fact has been translated into lower bound exclusions on their possible mass values. The Large Hadron Collider (LHC) being the most recently constructed particle collider with the highest collision energies ever achieved experimentally, provides a new platform to continue the search for Leptoquarks at even higher mass ranges.
This thesis describes a search for pair-produced second-generation Leptoquarks using 20.3 fb−1 of data recorded by the ATLAS detector of LHC at √s = 8 TeV. Events with two oppositely charged muons and two or more jets in the final state were used. Candidate leptoquark events were selected with the help of four observables: the di-muon invariant mass (Mμμ ), the sum of the pT of the two muons
(LT ), the sum of the pT of the two leading jets (HT ) and the average Leptoquark mass (MLQ ). Monte Carlo simulations of SM background processes have shown
to be in good agreement with data, both in the region constructed using selection requirements for candiate leptoquark events and in the designated control regions.
Since no significant excess of events was observed in data, a exclusion limit was set as a function of the Leptoquark mass.
Conflict Management
(2014)
Humans have a remarkable ability to plan ahead, set goals for the future and then to act accordingly. Unfortunately, this is not always the case. Everybody has experienced situations in which motivational urges like a tendency to drink another beer, or over-learned behavioral routines like driving on the right side of the road collide with ones´ goals. This tug of war between impulsive or habitual action tendencies and goal-directed actions is called a conflict.
Conflict is ubiquitous and comes in many different ways. Not surprisingly, the means to control conflict are diverse, too. Clearly, people can manage conflict in multiple ways: When expecting a conflict situation to occur in the future, one can recruit more effort to resolve the conflict, for instance by inhibiting unwanted urges or habits. Alternatively one can avoid the conflict situation and thereby circumvent possible failures to control habits and impulses. Furthermore, when currently facing a conflict, people can mobilize more effort to overcome the conflict. Alternatively they can withdraw from the conflict situation to minimize the risk of indulging in their impulses and habits.
To account for these different ways to master a conflict, the present thesis takes an initial step towards a characterization of the variability of control. To this aim, two dimensions of control will be identified that result from partially incompatible constraints on action control. These dimensions depict a trade-off between flexibility and stability and between anticipatory early selection and reactive late correction of control parameters. To describe how these control trade-offs interact and to explain how conflict is handled to ensure adaptation behavior, the conflict management framework is proposed. A corollary of this framework suggests that one strategy to control conflict comprises of a tendency to withdraw from a conflict situation.
The empirical part probed this behavioral response to conflict and tested whether participants withdraw from conflict situations. To approach this hypothesis, three series of experiments are presented that employ free choice paradigms, speeded response classification tasks and continuous movement tracking tasks to reveal withdrawal from conflict. Results show that conflict caused motivational avoidance tendencies (Experiment 1 &2), biased decision making away from conflict tasks (Experiment 3 & 5) and affected the execution of more complex courses of action (Experiment 6 & 7).
The results lend support for the proposed conflict management framework and provide the ground for a more thorough treatment of how the different conflict strategies can be integrated. As a first step, a connectionist model is presented that accounts for the simultaneous implementation of two conflict strategies observed in Experiments 3 – 5. The remainder of the present thesis analyses failures to integrate different conflict strategies. It is discussed how the conflict management framework can shed light on selected psychopathologies, inter-individual differences in control and break-downs of self-control.
The role of host dendritic cells during the effector phase of intestinal graft-versus-host disease
(2014)
Monocytes can be functionally divided in two subsets, both capable to differentiate into dendritic cells (DCs): CX3CR1loCCR2+ classical monocytes, actively recruited to the sites of inflammation and direct precursors of inflammatory DCs; and CX3CR1hiCCR2− non-classical monocytes, characterized by CX3CR1-dependent recruitment to non-inflamed tissues. Yet, the function of non-classical monocyte-derived DCs (nc-mo-DCs), and the factors, which trigger their recruitment and DC differentiation, have not been clearly defined to date. Here we show that in situ differentiated nc-moDCs mediate immunosuppression in the context of intestinal graft-versus-host disease (GVHD).
Employing multi-color confocal microscopy we observed a dramatic loss of steady state host-type CD103+ DC subset immediately after transplantation, followed by an enrichment of immune-regulatory CD11b+ nc-moDCs. Parabiosis experiments revealed that tissue-resident non-classical CX3CR1+ monocytes differentiated in situ into intestinal CD11b+ nc-moDCs after allogeneic hematopoietic cell transplantation (allo-HCT). Differentiation of this intestinal DC subset depended on CSF-1 but not on Flt3L, thus defining the precursors as monocytes and not pre-DCs. Importantly, CX3CR1 but not CCR2 was required for this DC subset differentiation, hence defining the precursors as non-classical monocytes. In addition, we identify PD-L1 expression by CX3CR1+ nc-moDCs as the major mechanism they employ to suppress alloreactive T cells during acute intestinal GVHD. All together, we demonstrate that host nc-moDCs surprisingly mediate immunosuppression in the context of murine intestinal GVHD – as opposed to classical “inflammatory” monocyte-derived dendritic cells (mo-DCs) – via coinhibitory signaling. This thorough study unravels for the first time a biological function of a - so far only in vitro and phenotypically described - DC subset. Our identification of this beneficial immunoregulatory DC subset points towards alternate future strategies in underpinning molecular pathways to foster their function. We describe an unexpected mechanism of nc-moDCs in allo-HCT and intestinal GVHD, which might also be important for autoimmune disorders or infections of the gastrointestinal tract.
Fabrication and characterization of CPP-GMR and spin-transfer torque induced magnetic switching
(2014)
Even though the unique magnetic behavior for ferromagnets has been known for thousands of years, explaining this interesting phenomenon only occurred in the 20th century. It was in 1920, with the discovery of electron spin, that a clear explanation of how ferromagnets achieve their unique magnetic properties came to light. The electron carries an intrinsic electric charge and intrinsic angular momentum. Use of this property in a device was achieved in 1998 when Fert and Gru¨nberg independently found that the resistance of FM/NM/FM trilayer depended on the angle between the magnetization of the two layers. This phenomena which is called giant magnetoresistance (GMR) brought spin transfer into mainstream. This new discovery created a brand new research fi called “spintronics” or “spin based electronics” which exploits the intrinsic spin of electron.
As expected spintronics delivered a new generation of magnetic devices which are currently used in magnetic disk drives and magnetic random access memories (MRAM). The potential advantages of spintronics devices are non-volatility, higher speed, increased data density and low power consumption. GMR devices are already used in industry as magnetic memories and read heads.
The quality of GMR devices can be increased by developing new magnetic materials and also by going down to nanoscale. The desired characteristic properties of these new materials are higher spin polarization, higher curie temperature and better spin filtering. Half-metals are a good candidate for these devices since they are expected to have high polarization. Some examples of half-metals are Half-Heusler alloy, full Heusler alloy and Perovskite or double Perovskite oxides. The devices discussed in this thesis have NiMnSb half-Heusler alloy and permalloy as the ferromagnetic layers separated by Cu as the nonmagnetic layer.
This dissertation includes mainly two parts, fabrication and characterization of nan- opillars. The layer stack used for the fabrication is Ru/Py/Cu/NiMnSb which is grown on an InP substrate with an (In,Ga)As buff by molecule beam epitaxy (MBE). A new method of fabrication using metal mask which has a higher yield of working samples over the previous method (using the resist mask) used in our group is discussed in detail. Also, the advantages of this new method and draw backs of the old method are explained thoroughly (in chapter 3).
The second part (chapters 4 and 5) is focused on electrical measurements and charac- terization of the nanopillar, specially with regard to GMR and spin-transfer torque (STT)
measurements. In chapter 4, the results of current perpendicular the plane giant mag- netoresistance (CPP-GMR) measurements at various temperatures and in-plane magnetic fi are presented. The dependence of CPP-GMR on bias current and shape anisotropy of the device are investigated. Results of these measurements show that the device has strong shape anisotropy.
The following chapter deals with spin-transfer torque induced magnetic switching measurements done on the device. Critical current densities are on the order of 106 A/cm2, which is one order of magnitude smaller than the current industry standards. Our results show that the two possible magnetic configurations of the nanopillar (parallel and anti-parallel) have a strong dependence on the applied in-plane magnetic fi Fi- nally, four magnetic fi regimes based on the stability of the magnetic configuration (P stable, AP stable, both P and AP stable, both P and AP unstable) are identified.
The discovery of the Giant Magneto Resistance (GMR) effect in 1988 by Albert Fert [Baib 88] and Peter Grünberg [Bina 89] led to a rapid development of the field of spintronics and progress in the information technology. Semiconductor based spintronics, which appeared later, offered a possibility to combine storage and processing in a single monolithic device. A direct result is reduced heat dissipation. The observation of the spin Seebeck effect by Ushida [Uchi 08] in 2008 launched an increased interest and encouraged research in the field of spin caloritronics. Spintronics is about the coupling of charge and spin transport. Spin caloritronics studies the interaction between heat and spin currents. In contrast to spintronics and its variety of applications, a particular spin-caloritronic device has not yet been demonstrated. However, many of the novel phenomena in spin caloritronics can be detected in most spintronic devices. Moreover, thermoelectric effects might have a significant influence on spintronic device operation. This will be of particular interest for this work. Additional knowledge on the principle of coupling between heat and spin currents uncovers an alternative way to control heat dissipation and promises new device functionalities.
This thesis aims to further extend the knowledge on thermoelectrics in materials with strong spin-orbit coupling, in this case the prototypical ferromagnetic semiconductor (Ga,Mn)As. The study is focused on the thermoelectric / thermomagnetic effects at the interface between a normal metal and the ferromagnetic (Ga,Mn)As. In such systems, the different interfaces provide a condition for minimal phonon drag contribution to the thermal effects. This suggests that only band contributions (a diffusion transport regime) to these effects will be measured.
Chapter 2 begins with an introduction on the properties of the studied material system, and basics on thermoelectrics and spin caloritronics. The characteristic anisotropies of the (Ga,Mn)As density of states (DOS) and the corresponding magnetic properties are described. The DOS and magnetic anisotropies have an impact on the transport prop- erties of the material and that results in effects like tunneling anisotropic magnetores- istance (TAMR) [Goul 04]. Some of these effects will be used later as a reference to the results from thermoelectric / thermomagnetic measurements. The Fingerprint tech- nique [Papp 07a] is also described. The method gives an opportunity to easily study the anisotropies of materials in different device geometries.
Chapter 3 continues with the experimental observation of the diffusion thermopower of (Ga,Mn)As / Si-doped GaAs tunnel junction. A device geometry for measuring the diffusion thermopower is proposed. It consists of a Si - doped GaAs heating channel with a Low Temperature (LT) GaAs / (Ga,Mn)As contact (junction) in the middle of the channel. A single Ti / Au contact is fabricated on the top of the junction. For transport characterization, the device is immersed in liquid He. A heating current technique is used to create a temperature difference by local heating of the electron system on the Si:GaAs side. An AC current at low frequency is sent through the channel and it heats the electron population in it, while the junction remains at liquid He temperature (experimentally con- firmed). A temperature difference arises between the heating channel and the (Ga,Mn)As contact. As a result, a thermal (Seebeck) voltage develops across the junction, which we call tunnelling anisotropic magneto thermopower (TAMT), similar to TAMR. TAMT is detected by means of a standard lock-in technique at double the heating current frequency (at 2f ). The Seebeck voltage is found to be linear with the temperature difference. That dependence suggests a diffusion transport regime. Lattice (phonon drag) contribution to the thermovoltage, which is usually highly nonlinear with temperature, is not observed.
The value of the Seebeck coefficient of the junction at 4.2 K is estimated to be 0.5 µV/K.
It is about three orders of magnitude smaller than the previously reported one [Pu 06]. Subsequently, the thermal voltage is studied in external magnetic fields. It is found that the thermopower is anisotropic with the magnetization direction. The anisotropy is explained with the anisotropies of the (Ga,Mn)As contact. Further, switching events are detected in the thermopower when the magnetic field is swept from negative to positive fields. The switchings remind of a spin valve signal and is similar to the results from previous experiments on spin injection using a (Ga,Mn)As contacts in a non-local detection scheme. That shows the importance of the thermoelectric effects and their possible contribution to the spin injection measurements. A polar plot of the collected switching fields for different magnetization angles reveals a biaxial anisotropy and resembles earlier TAMR measurements of (Ga,Mn)As tunnel junction. A simple cartoon model is introduced to describe and estimate the expected thermopower of the studied junction. The model yields a Fermi level inside of the (Ga,Mn)As valence band. Moreover, the model is found to be in good agreement with the experimental results.
The Nernst effect of a (Ga,Mn)As / GaAs tunnel junction is studied in Chapter 4. A modified device geometry is introduced for this purpose. Instead of a single contact on the top of the square junction, four small contacts are fabricated to detect the Nernst signal. A temperature difference is maintained by means of a heating current technique described in Chapter 3. A magnetic field is applied parallel to the device plane. A voltage drop across two opposite contacts is detected at 2f. It appears that a simple cosine function with a parameter the angle between the magnetization and the [100] crystal direction in the (Ga,Mn)As layer manages to describe this signal which is attributed to the anomalous Nernst effect (ANE) of the ferromagnetic contact. Its symmetry is different than the Seebeck effect of the junction. For the temperature range of the thermopower measurements the ANE coefficient has a linear dependence on the temperature difference (∆T). For higher ∆T, a nonlinear dependence is observed for the coefficient. The ANE coefficient is found to be several orders of magnitude smaller than any Nernst coefficient in the literature. Both the temperature difference and the size of the ANE coefficient require further studies and analysis. Switching events are present in the measured Nernst signal when the magnetic field is swept from positive to negative values. These switchings are related to the switching fields in the ferromagnetic (Ga,Mn)As. Usually, there are two states which are present in TAMR or AMR measurements - low and high resistance. Instead of that, the Nernst signal appears to have three states - high, middle and low thermomagnetic voltage. That behaviour is governed not only by the magnetization, but also by the characteristic of the Nernst geometry.
Chapter 5 summarizes the main observations of this thesis and contains ideas for future work and experiments.
Synapsins are conserved synapse-associated hosphoproteins involved in the fine regulation of neurotransmitter release. The aim of the present project is to study the phosphorylation of synapsins and the distribution of phospho-synapsin in the brain of Drosophila melanogaster.
Three antibodies served as important tools in this work, a monoclonal antibody (3C11/α-Syn) that recognizes all known synapsin isoforms and two antisera against phosphorylated synapsin peptides (antiserum PSyn(S6) against phospho-serine 6 and antiserum PSyn(S464) against phospho-serine 464). These antisera were recently generated in collaboration with Bertram Gerber and Eurogentec. ...
Organisms have evolved endogenous clocks which allow them to organize their behavior, metabolism and physiology according to the periodically changing environmental conditions on earth. Biological rhythms that are synchronized to daily changes in environment are governed by the so-called circadian clock. Since decades, chronobiologists have been investigating circadian clocks in various model organisms including the fruitfly Drosophila melanogaster, which was used in the present thesis.
Anatomically, the circadian clock of the fruitfly consists of about 150 neurons in the lateral and dorsal protocerebrum, which are characterized by their position, morphology and neurochemistry. Some of these neurons had been previously shown to contain either one or several neuropeptides, which are thought to be the main signaling molecules used by the clock. The best investigated of these neuropeptides is the Pigment Dispersing Factor (PDF), which had been shown to constitute a synchronizing signal between clock neurons as well as an output factor of the clock.
In collaboration with various coworkers, I investigated the roles of three other clock expressed neuropeptides for the generation of behavioral rhythms and the partly published, partly unpublished data are presented in this thesis. Thereby, I focused on the Neuropeptide F (NPF), short Neuropeptide F (sNPF) and the Ion Transport Peptide (ITP). We show that part of the neuropeptide composition within the clock network seems to be conserved among different Drosophila species. However, the PDF expression pattern in certain neurons varied in species deriving from lower latitudes compared to higher latitudes. Together with findings on the behavioral level provided by other people, these data suggest that different species may have altered certain properties of their clocks - like the neuropeptide expression in certain neurons - in order to adapt their behavior to different habitats.
We then investigated locomotor rhythms in Drosophila melanogaster flies, in which neuropeptide circuits were genetically manipulated either by cell ablation or RNA interference (RNAi). We found that none of the investigated neuropeptides seems to be of equal importance for circadian locomotor rhythms as PDF. PDF had been previously shown to be necessary for rhythm maintenance in constant darkness (DD) as well as for the generation of morning (M) activity and for the right phasing of the evening (E) activity in entrained conditions. We now demonstrate that NPF and ITP seem to promote E activity in entrained conditions, but are clearly not the only factors doing so. In addition, ITP seems to reduce nighttime activity. Further, ITP and possibly also sNPF constitute weak period shortening components in DD, thereby opposing the effect of PDF. However, neither NPF or ITP, nor sNPF seem to be necessary in the clock neurons for maintaining rhythmicity in DD.
It had been previously suggested that PDF is released rhythmically from the dorsal projection terminals. Now we discovered a rhythm in ITP immunostaining in the dorsal projection terminals of the ITP+ clock neurons in LD, suggesting a rhythm in peptide release also in the case of ITP. Rhythmic release of both ITP and PDF seems to be important to maintain rhythmic behavior in DD, since constantly high levels of PDF and ITP in the dorsal protocerebrum lead to behavioral arrhythmicity.
Applying live-imaging techniques we further demonstrate that sNPF acts in an inhibitory way on few clock neurons, including some that are also activated by PDF, suggesting that it acts as signaling molecule within the clock network and has opposing effects to PDF. NPF did only evoke very little inhibitory responses in very few clock neurons, suggesting that it might rather be used as a clock output factor. We were not able to apply the same live-imaging approach for the investigation of the clock neuron responsiveness to ITP, but overexpression of ITP with various driver lines showed that the peptide most likely acts mainly in clock output pathways rather than inter-clock neuron communication.
Taking together, I conclude that all investigated peptides contribute to the control of locomotor rhythms in the fruitfly Drosophila melanogaster. However, this control is in most aspects dominated by the actions of PDF and rather only fine-tuned or complemented by the other peptides. I assume that there is a high complexity in spatial and temporal action of the different neuropeptides in order to ensure correct signal processing within the clock network as well as clock output.
Tumor angiogenesis is essential for the growth of solid tumors as their proliferation and survival is dependent on consistent oxygen and nutrient supply. Anti-angiogenic treatments represent a therapeutic strategy to inhibit tumor growth by preventing the formation of new blood vessels leading to starvation of the tumor. One of the best characterized anti angiogenic therapeutics is the monoclonal antibody bevacizumab (Avastin), which targets and neutralizes VEGF leading to disruption of the VEGF signaling pathway. Until today, bevacizumab has found its way into clinical practice and has gained approval for treatment of different types of cancer including colorectal cancer, non-small cell lung cancer, breast cancer and renal cell carcinoma. Signaling of VEGF is mediated through VEGF receptors, mainly VEGFR2, which are primarily located on the cell surface of endothelial cells. However, there has been evidence that expression of VEGF receptors can also be found on tumor cells themselves raising the possibility of autocrine and/or paracrine signaling loops. Thus, tumor cells could also benefit from VEGF signaling, which would promote tumor growth. The aim of this study was to investigate if bevacizumab has a direct effect on tumor cells in vitro. To this end, tumor cell lines from the NCI-60 panel derived from four different tumor types were treated with bevacizumab and angiogenic gene and protein expression as well as biological outputs including proliferation, migration and apoptosis were investigated. Most of the experiments were performed under hypoxia to mimic the in vivo state of tumors. Overall, there was a limited measurable effect of bevacizumab on treated tumor cell lines according to gene and protein expression changes as well as biological functions when compared to endothelial controls. Minor changes in terms of proliferation or gene regulation were evident in a single tumor cell line after VEGF-A blockade by bevacizumab, which partially demonstrated a direct effect on tumor cells. However, the overall analysis revealed that tumor cell lines are not intrinsically affected in an adverse manner by bevacizumab treatment.
Besides the functional analysis of tumor cells, embryonic stem cell derived endothelial cells were characterized to delineate vascular Hey gene functions. Hey and Hes proteins are the best characterized downstream effectors of the evolutionary conserved Notch signaling pathway, which mainly act as transcriptional repressors regulating downstream target genes. Hey proteins play a crucial role in embryonic development as loss of Hey1 and Hey2 in mice in vivo leads to a severe vascular phenotype resulting in early embryonic lethality. The major aim of this part of the thesis was to identify vascular Hey target genes using embryonic stem cell derived endothelial cells utilizing a directed endothelial differentiation approach, as ES cells and their differentiation ability provide a powerful in vitro system to study developmental processes. To this end, Hey deficient and Hey wildtype embryonic stem cells were stably transfected with an antibiotic selection marker driven by an endothelial specific promoter, which allows selection for endothelial cells. ESC-derived endothelial cells exhibited typical endothelial characteristics as shown by marker gene expression, immunofluorescent staining and tube formation ability. In a second step, Hey deficient ES cells were stably transfected with doxycycline inducible Flag-tagged Hey1 and Hey2 transgenes to re-express Hey proteins in the respective cell line. RNA-Sequencing of Hey deficient and Hey overexpressing ES cells as well as ESC-derived endothelial cells revealed many Hey downstream target genes in ES cells and fewer target genes in endothelial cells. Hey1 and Hey2 more or less redundantly regulate target genes in ES cells, but some genes were regulated by Hey2 alone. According to Gene Ontology term analysis, Hey target genes are mainly involved in embryonic development and transcriptional regulation. However, the response of ESC-derived endothelial cells in regulating Hey downstream target genes was rather limited when compared to ES cells, which could be due to lower transgene expression in endothelial cells. The limited response also raises the possibility that target gene regulation in endothelial cells is not only dependent on Hey gene functions alone and thus loss or overexpression of Hey genes in this in vitro setting does not influence target gene regulation.
The discontinuous mountain permafrost zone is characterized by its heterogeneous distribution of frozen ground and a small-scale variability of the ground thermal regime. Large parts of these areas are covered by glacial till and sediments that were exposed after the recession of the glaciers since the 19th century. As response to changed climatic conditions permafrost-affected areas will lose their ability as sediment storage and on the contrary, they will act as source areas for unconsolidated debris. Along with modified precipitation patterns the degradation of the discontinuous mountain permafrost zone will (temporarily)
increase its predisposition for mass movement processes and thus has to be monitored in a differentiated way.
Therefore, the spatio-temporal dynamics of frozen ground are assessed in this study based on results obtained in three glacier forefields in the Engadin (Swiss Alps) and at the Zugspitze (German Alps). Sophisticated techniques are required to uncover structural differences in the subsurface. Thus, the applicability of advanced geophysical methods is tested for alpine environments and proved by the good 3D-delineation of a permafrost body and by the detection of detailed processes in the active layer during snow melt. Electrical resistivity tomography (ERT) approaches (quasi-3D, daily monitoring) reveal
their capabilities to detect subsurface resistivity changes both, in space and time. Processes and changes in regard to liquid water content and ice content are observed to exist at short distances even though the active layer is not subject to a considerable thickening
over the past 7 years. The stability of the active layer is verified by borehole temperature data. No synchronous
trend is recognized in permafrost temperatures and together with multi-annual electrical resistivity data they indicate degradation and aggradation processes to occur at the same time. Different heat transfer mechanisms, especially during winter, are recognized by means of temperature sensors above, at, and beneath the surface. Based on surface and borehole temperature data the snow cover is assessed as the major controlling factor for the thermal regime on a local scale. Beyond that, the debris size of the substrate, which modifies the snow cover and regulates air exchange processes above the ground, plays a crucial role as an additional buffer layer. A fundamental control over the stability of local permafrost patches is attributed to the ice-rich transient layer at the base of the active layer. The refreezing of melt water in spring is illustrated with diurnal ERT monitoring data from glacier forefield Murtèl.
Based on these ERT and borehole temperature data a conceptual model of active layer processes between autumn and spring is developed. The latent heat that is inherent in the transient layer protects the permafrost beneath from additional energy input from the surface as long as the refreezing of melt water in spring prevails and sufficient ice is build up each spring. Permafrost sites without a transient layer show considerably higher
temperatures at their table and are more prone to degradation in the years and decades ahead. As main investigation area a glacier forefield beneath the summits of Piz Murtèl and Piz Corvatsch in the Swiss Engadin was chosen. It is located west of the well-known
rock glacier Murtèl. Here, a permafrost body inside and adjacent to the lateral moraine was investigated and could be delineated very well. In the surrounding glacier forefield no further indications of permafrost occurrence could be made. Geophysical data and temperature values from the surface and from a permafrost borehole were compared with long-term data from proximate glacier forefield Muragl (Engadin). Results from both
sites show a considerable stability of the active layer depth in summer while at the same time geophysical data demonstrate annual changes in the amount of liquid water content and ice content in the course of years.
A third investigation area is located in the German Alps. The Zugspitzplatt is a high mountain valley with considerably more precipitation and thicker snow cover compared to both Swiss sites. In close proximity to the present glacier and at a large talus slope beneath the summit crest ground ice could be observed. The high subsurface resistivity values and comparable data from existing studies at the Zugspitze may indicate the presence of sedimentary ice in the subsurface of the karstified Zugspitzplatt. Based on these complementary data from geophysical and temperature measurements as
well as geomorphological field mapping the development of permafrost in glacier forefields under climate change conditions is analyzed with cooperation partners from the SPCC project. Ground temperature simulations forced with long-term climatological data are modeled to assess future permafrost development in glacier forefield Murtèl. Results suggest that permafrost is stable as long as the ice-rich layer between the active layer and
the permafrost table exists. After a tipping point is reached, the disintegration of frozen ground starts to proceed rapidly from the top.
In this work, high-energy observables arising during different phases of SN explosions are studied with respect to their potential for allowing conclusions on suggested explosion scenarios and physical mechanisms that are thought to influence the evolution of SNe in a major way. The focus on selected observables at keV and MeV energies is motivated by the appearance of large degeneracies that can even be found for disparate scenarios in many wavelength regimes. Since the discussed emission in the high-energy regime is directly linked to nuclear processes being usually very distinct for different suggested physical models, the signatures at keV and MeV energies allow for meaningful comparisons of simulations with observations.
In this paper the relationship between corporate sustainability performance and corporate financial performance is researched. It is hypothesized that a better sustainability performance of firms leads to financial success in terms of increased EBIT and Market Capitalization. Furthermore 17 environmental activities and their assumed impact on financial benefits are analyzed for ten different industry sectors. The data sample for this research paper has been taken from Thomson Reuters Database ASSET4 and includes 3115 firms. The results show that there is a positive and non-linear link between the sustainability performance and the financial performance of firms, intending that financially more successful firms can gain greater benefits from being sustainable than less successful firms do. Furthermore sustainable environmental activities have been identified for different industry sectors, which indicate to lead to an increase of the financial performance.
The experimental technique predominantly employed within the scope of this Thesis constitutes one subarea of femtochemistry: the time-resolved spectroscopy of photoin-
duced chemical reactions in the liquid phase by means of molecular signatures in the mid-infrared (MIR) spectral range. Probing transient vibrational states, i.e., dynamic
changes in the vibrational motion of specic molecular subunits or functional Groups allows for a distinct separation and assignment of measured signals to emerging molecular species. For this purpose, one key building block is indispensable, which most of the investigations carried out within the eld of femtochemistry have in common: a coherent light source delivering ultrashort laser pulses with a temporal duration that matches the femtosecond time scale on which molecular motions typically occur. This instrumentation enables the observation of photoinduced chemical reactions from the
starting point|the excitation event to the appearance of intermediates to the nal formation of stable photoproducts after several pico- or nanoseconds.
This work comprises the acquisition and presentation of time-resolved spectroscopic data related to promising molecular systems upon photoexcitation as well as the im-
plementation and testing of experimental optical techniques both for the presented experiments but as well for experiments conceivable in the future. In addition, linear spectroscopy measurements and quantum-chemical simulations on the emerging chemical species have been carried out. In so doing, the primary processes and subse-
quently emerging reaction products of two compounds on a timescale of several nanoseconds after photoexcitation have been elucidated in great detail. Both compounds, the
[Mn(CO)3(tpm)]+ (tpm = tris(2-pyrazolyl)methane) CO-releasing molecule (CORM) and the 5-diazo Meldrum's acid (DMA), are of academic interest but in addition belong
to molecular classes that might be utilized in the near future as dark-stable prodrugs under physiological conditions or that are already utilized in industrial chemistry procedures, respectively. The ndings of both studies gave rise to implement and examine two techniques for prospective transient absorption experiments, namely the shaping and characterization of ultraviolet (UV) laser pulses and the recording of two-photon excitation spectra. Beyond that, since each of the depicted experiments is based on the detection of weak transient absorption signals in the MIR spectral region, two dif-
ferent detection schemes, via chirped-pulse upconversion (CPU) on the one hand and via direct multichannel MCT detection on the other hand, have been juxtaposed at the
conclusion of this work. Since both techniques are suitable in femtosecond pump-probe measurements but thereby exhibit individual strengths and weaknesses, a comparative study provides clarication of the respective pros and cons. The first study introduced within this work investigates the complex photochemistry
of DMA, a photoactive compound used in lithography and industrial chemistry. By femtosecond MIR transient absorption spectroscopy covering several nanoseconds, the
light-induced dynamics and ultrafast formation of several photoproducts from the manifold of reaction pathways have been disclosed to form a coherent picture of the overall
reaction scheme. After UV excitation of DMA dissolved in methanol to the second excited state S2, 70% of excited molecules relax back to the S0 ground state. In compet-
ing processes, they can either undergo an intramolecular Wolff rearrangement to form ketene, which reacts with a solvent molecule to an enol intermediate and further to carboxylate ester, or they rst relax to the DMA S1 state, from where they can isomerize to a diazirine. The third competing reaction channel, having the lowest quantum efficiency with respect to the rst two channels, is the formation of a singlet carbene out of the S1 state. From there an ylide can arise or, via an intersystem crossing, the triplet form of the carbene follows. Whereas the primary reaction steps occur on a picosecond timescale, the subsequently arising intermediates and stable photoproducts are formed
within a few hundreds to thousands of picoseconds. For a reliable identication of the involved compounds, density functional theory calculations on the normal modes and
Fourier-transform infrared spectroscopy of the reactant and the photoproducts in the chemical equilibrium accompany the analysis of the transient spectra. Additional experiments in ethanol and isopropanol led to slight spectral shifts as well as elongated time
constants due to steric hindrance in transient spectra connected with the ester Formation channel, further substantiating the assignment of the occurring reaction pathways and photoproducts.
The study demonstrated that the combination of linear and time-resolved spectroscopic measurements in conjunction with quantum-chemical calculations constitutes a powerful tool to unravel even highly complex photoreactions exhibiting multiple consecutive intermediate states within parallel reaction pathways. Although some of the individual reaction steps, for example the ketene formation via Wolff rearrangement, have been observed on ultrashort time scales before, this work encompassed the Observation of the whole set of appearing photoproducts of DMA in different alcohol solutions within several nanoseconds. In this sense, the ultrafast photochemistry of DMA represents a prototype example for a multisequential reaction scheme, elucidated by the capabilities of femtosecond MIR spectroscopy.
With a modified instrumentation concerning amongst others the system delivering the fundamental laser pulses or the generation of the UV pump pulses, the next ob-
jective within this work was to elucidate the primary processes upon UV Irradiation of a manganese tricarbonyl CORM in aqueous environment. The time-resolved
experiment was performed with two different pump wavelengths and furthermore supported by linear spectroscopy methods and time-dependent density functional theory (TDDFT) calculations on the excited states as well as DFT calculations on the ground
states. The measurements revealed that irradiating the compound with UV excitation pulses primarily leads to ultrafast photolysis of one CO ligand. Geminate recombination may occur within one picosecond but it remains a minor process as the photolyzed CO
group is liberated and the unoccupied coordination site is predominantly filled by an incoming solvent molecule. There was no evidence for hot CO bands, i.e., the remaining CO ligands|in the dicarbonyl photoproduct as well as in the intact CORM are not vibrationally excited through the UV excitation of the CORM. According to this, the excess energy merges into low-frequency vibrational modes associated with the molecule as a whole. Since studies on a macroscopic scale at irradiation times of several minutes prove that UV irradiation eventually leads to the release of two or even all three CO
ligands, further loss of CO most likely necessitates manganese oxidation or another interaction with light. To clarify the latter, a consecutive UV pulse was employed in order to excite the photoproducts subsequent to the initial pump interaction. However, the data obtained was not instructive enough to denitely exclude the manganese oxidation being responsible for the loss of further CO groups. Besides the exchange of a CO Group by a solvent molecule or the geminate recombination, the employment of two different excitation wavelengths in combination with ndings derived from the TDDFT calculations suggested another reaction process, namely the possibility that the excitation does not lead to any bond cleavage at all. As the CORM under investigation is tissue-selective and cytotoxic against cancer cells, knowledge of these rst photoinduced reaction steps is essential for a full understanding of its biological activity. Inspired by these two studies, experimental techniques for prospective transient absorption measurements have been implemented and tested within preparative measure-
ments. First, in the course of a UV-pump-MIR-probe experiment with specically tailored excitation pulses, one could pursue the aim of coherently controlling the outcome of a photoreaction in the liquid phase. Out of the rich photochemistry of DMA the vibrational signature of a particular molecular species might thereby serve as a feedback signal, which is a central part of a learning loop that adaptively determines the pulse shape that steers the quantum mechanical system upon photoexcitation into a desired direction. This motivated the installation and testing of devices by means of which the shaping and characterization of ultrashort laser pulses in the UV could be performed. Second, motivated by the biological applications of CORMs, one can imagine a scenario where a certain amount of CORMs is deposited inside cancerous tissue. Since the activation of CO loss by means of UV pulses is not possible due to the absorption characteristics of biological tissue, the simultaneous excitation via two photons from the visible spectral regime seems appealing. However, success or failure of such an application depends on whether the deposited compound efficiently absorbs two photons simultaneously, i.e., whether the two-photon absorption cross section is large enough. Therefore, a setup to record two-photon excitation spectra under full consideration of
the crucial laser pulse parameters like the pulse duration, energy and central wavelength was arranged and tested. The rst results were obtained with a commercially available reference system (Mn2CO10) but the setup as well as the described measurement and
data analysis procedure can easily be applied to record the two-photon absorption cross section of more promising molecular systems. Third, as the detection of probe pulses
in the MIR spectral region is part of each time-resolved measurement throughout this thesis, a comparison between the newly established technique of CPU and direct multi-
channel MCT detection is presented by means of pump{probe experiments on Mn2CO10 and Co4CO12 with a 1 kHz shot-to-shot data acquisition. It was shown that the CPU detection technique scores with its high spectral resolution and coverage of the easy-to-handle and more cost-effective CCD detectors. On the other hand, in the course of the additional nonlinear upconversion process intensity fluctuations of the chirped fundamental pulses are transferred to the probe spectrum in the visible regime. This entails a lower signal-to-noise ratio than the direct MCT detection, which can be compensated by an additional normalization procedure applied to the CPU probe pulses. As a consequence, the CPU detection scheme offers more flexibility for future investigations
employing MIR probe pulses. This is of great importance for many applications within the presented eld of femtochemistry as a huge variety of time-resolved investigations on a multitude of systems in the liquid phase is based on the detection of weak transient
absorption signals in the MIR spectral region.
In this work, femtosecond laser pulses are used to launch optical excitations on different nanostructures. The excitations are confined below the diffraction limit and propagate along the nanostructures.
Fundamental properties of these ultrashort optical near fields are determined by characterizing the far-field emission after propagation with a setup developed for this task. Furthermore, control of the nanooptical excitations' spatial and temporal evolution is demonstrated for a designed nanostructure.
The nature of dark matter and the origin of the baryon asymmetry are two of the deepest mysteries of modern particle physics. In the absence of hints regarding a possible solution to these mysteries, many approaches have been developed to tackle them simultaneously leading to very diverse and rich models. We give a short review where we describe the general features of some of these models and an overview on the general problem. We also propose a diagrammatic notation to label the different models.
Bacterial mastitis is caused by invasion of the udder, bacterial multiplication and induction of
inflammatory responses in the bovine mammary gland. Disease severity and the cause of disease are
influenced by environmental factors, the cow’s immune response as well as bacterial traits. Escherichia coli (E. coli) is one of the main causes of acute bovine mastitis, but although pathogenic E. coli strains can be classified into different pathotypes, E. coli causing mastitis cannot unambiguously be distinguished from commensal E. coli nor has a common set of virulence factors
been described for mastitis isolates. This project focussed on the characterization of virulence-
associated traits of E. coli mastitis isolates in comprehensive analyses under conditions either
mimicking initial pathogenesis or conditions that E. coli mastitis isolates should encounter while entering the udder. Virulence-associated traits as well as fitness traits of selected bovine mastitis or faecal E. coli strains were identified and analyzed in comparative phenotypic assays. Raw milk whey was introduced to
test bacterial fitness in native mammary secretion known to confer antimicrobial effects.
Accordingly, E. coli isolates from bovine faeces represented a heterogeneous group of which some
isolates showed reduced ability to survive in milk whey whereas others phenotypically resembled
mastitis isolates that represented a homogeneous group in that they showed similar survival and
growth characteristics in milk whey. In contrast, mastitis isolates did not exhibit such a uniform phenotype when challenged with iron shortage, lactose as sole carbon source and lingual
antimicrobial peptide (LAP) as a main defensin of milk. Reduced bacterial fitness could be related to LAP suggesting that bacterial adaptation to an intramammary lifestyle requires resistance to host
defensins present in mammary secretions, at least LAP.
E. coli strain 1303 and ECC-1470 lack particular virulence genes associated to mastitis isolates. To find out whether differences in gene expression may contribute to the ability of E. coli variants to cause mastitis, the transcriptome of E. coli model mastitis isolates 1303 and ECC-1470 were analyzed to
identify candidate genes involved in bacterium-host interaction, fitness or even pathogenicity during bovine mastitis.
DNA microarray analysis was employed to assess the transcriptional response of E. coli 1303 and
ECC-1470 upon cocultivation with MAC-T immortalized bovine mammary gland epithelial cells to
identify candidate genes involved in bacterium-host interaction. Additionally, the cell adhesion and invasion ability of E. coli strain 1303 and ECC-1470 was investigated. The transcriptonal response to the presence of host cells rather suggested competition for nutrients and oxygen between E. coli and MAC-T cells than marked signs of adhesion and invasion. Accordingly, mostly fitness traits that may also contribute to efficient colonization of the E. coli primary habitat, the gut, have been utilized by the mastitis isolates under these conditions. In this study, RNA-Seq was employed to assess the bacterial transcriptional response to milk whey.
According to our transcriptome data, the lack of positively deregulated and also of true virulence-associated determinants in both of the mastitis isolates indicated that E. coli might have adapted by other means to the udder (or at least mammary secretion) as an inflammatory site. We identified traits that promote bacterial growth and survival in milk whey. The ability to utilize citrate promotes fitness and survival of E. coli that are thriving in mammary secretions. According to our results, lactoferrin has only weak impact on E. coli in mammary secretions. At the same time bacterial determinants involved in iron assimilation were negatively regulated, suggesting that, at least during the first hours, iron assimilation is not a challenge to E. coli colonizing the mammary gland. It has been hypothesized that cellular iron stores cause temporary independency to extracellular accessible iron. According to our transcriptome data, this hypothesis was supported and places iron uptake
systems beyond the speculative importance that has been suggested before, at least during early
phases of infection. It has also been shown that the ability to resist extracytoplasmic stress, by oxidative conditions as well as host defensins, is of substantial importance for bacterial survival in mammary secretions.
In summary, the presented thesis addresses important aspects of host-pathogen interaction and
bacterial conversion to hostile conditions during colonization of the mastitis inflammatory site, the mammary gland.
Healthy Dietary Interventions and Lipoprotein (a) Plasma Levels: Results from the Omni Heart Trial
(2014)
Background: Increased lipoprotein(a) [Lp(a)] levels are associated with atherosclerotic cardiovascular disease. Studies of dietary interventions on changes in Lp(a) are sparse. We aimed to compare the effects of three healthy dietary interventions differing in macronutrient content on Lp(a) concentration.
Methods: Secondary analysis of a randomized, 3-period crossover feeding study including 155 (89 blacks; 66 whites) individuals. Participants were given DASHtype healthy diets rich in carbohydrates [Carb], in protein [Prot] or in unsaturated fat [Unsat Fat] for 6 weeks each. Plasma Lp(a) concentration was assessed at baseline and after each diet.
Results: Compared to baseline, all interventional diets increased mean Lp(a) by 2 to 5 mg/dl. Unsat Fat increased Lp(a) less than Prot with a difference of 1.0 mg/dl (95% CI, -0.5, 2.5; p=0.196) in whites and 3.7 mg/dl (95% CI, 2.4, 5.0; p<0.001) in blacks (p-value between races=0.008); Unsat Fat increased Lp(a) less than Carb with a difference of 20.6 mg/dl, 95% CI, -2.1, 0.9; p=0.441) in whites and 21.5 mg/dl (95% CI, -0.2, -2.8; p=0.021) in blacks (p-value between races=0.354). Prot increased Lp(a) more than Carb with a difference of 0.4 mg/dl (95% CI, -1.1, 1.9; p=0.597) in whites and 2.2 mg/dl (95%CI, 0.9, 3.5; p=0.001) in blacks (p-value between races=0.082).
Conclusion: Diets high in unsaturated fat increased Lp(a) levels less than diets rich in carbohydrate or protein with greater changes in blacks than whites. Our results suggest that substitutions with dietary mono- and polyunsaturated fatty acids in healthy diets may be preferable over protein or carbohydrates with regards to Lp(a).