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Organic solar cells have great potential to become a low-cost and clean alternative to conventional photovoltaic technologies based on the inorganic bulk material silicon. As a highly promising concept in the field of organic photovoltaics, bulk heterojunction (BHJ) solar cells consist of a mixture of an electron donating and an electron withdrawing component. Their degree of intermixing crucially affects the generation of photocurrent. In this work, the effect of an altered blend morphology on polaron pair dissociation, charge carrier transport, and nongeminate recombination is analyzed by the charge extraction techniques time delayed collection field (TDCF) and open circuit corrected transient charge extraction (OTRACE). Different comparative studies cover a broad range of material systems, including polymer and small-molecule donors in combination with different fullerene acceptors. The field dependence of polaron pair dissociation is analyzed in blends based on the polymer pBTTT-C16, allowing a systematic tuning of the blend morphology by varying the acceptor type and fraction. The effect of both excess photon energy and intercalated phases are minor compared to the influence of excess fullerene, which reduces the field dependence of photogeneration. The study demonstrates that the presence of neat fullerene domains is the major driving force for efficient polaron pair dissociation that is linked to the delocalization of charge carriers. Furthermore, the influence of the processing additive diiodooctane (DIO) is analyzed using the photovoltaic blends PBDTTT-C:PC71BM and PTB7:PC71BM. The study reveals amulti-tiered alteration of the blend morphology of PBDTTT-C based blends upon a systematic increase of the amount of DIO. Domains on the hundred nanometers length scale in the DIO-free blend are identified as neat fullerene agglomerates embedded in an intermixed matrix. With the addition of the additive, 0.6% and 1% DIO already substantially reduces the size of these domains until reaching the optimum 3% DIO mixture, where a 7.1% power conversion efficiency is obtained. It is brought into connection with the formation of interpenetrating polymer and fullerene phases. Similar to PBDTTT-C, the morphology of DIO-free PTB7:PC71BM blends is characterized by large fullerene domains being decreased in size upon the addition of 3% DIO. OTRACE measurements reveal a reduced Langevin-type, super-second order recombination in both blends. It is demonstrated that the deviation from bimolecular recombination kinetics cannot be fully attributed to the carrier density dependence of the mobility but is rather related to trapping in segregated PC71BM domains. Finally, with regard to small-molecule donors, a higher yield of photogeneration and balanced transport properties are identified as the dominant factors enhancing the efficiency of vacuum deposited MD376:C60 relative to its solution processed counterpart MD376:PC61BM. The finding is explained by a higher degree of dimerization of the merocyanine dye MD376 and a stronger donor-acceptor interaction at the interface in the case of the vacuum deposited blend.
Bacterial mastitis is caused by invasion of the udder, bacterial multiplication and induction of
inflammatory responses in the bovine mammary gland. Disease severity and the cause of disease are
influenced by environmental factors, the cow’s immune response as well as bacterial traits. Escherichia coli (E. coli) is one of the main causes of acute bovine mastitis, but although pathogenic E. coli strains can be classified into different pathotypes, E. coli causing mastitis cannot unambiguously be distinguished from commensal E. coli nor has a common set of virulence factors
been described for mastitis isolates. This project focussed on the characterization of virulence-
associated traits of E. coli mastitis isolates in comprehensive analyses under conditions either
mimicking initial pathogenesis or conditions that E. coli mastitis isolates should encounter while entering the udder. Virulence-associated traits as well as fitness traits of selected bovine mastitis or faecal E. coli strains were identified and analyzed in comparative phenotypic assays. Raw milk whey was introduced to
test bacterial fitness in native mammary secretion known to confer antimicrobial effects.
Accordingly, E. coli isolates from bovine faeces represented a heterogeneous group of which some
isolates showed reduced ability to survive in milk whey whereas others phenotypically resembled
mastitis isolates that represented a homogeneous group in that they showed similar survival and
growth characteristics in milk whey. In contrast, mastitis isolates did not exhibit such a uniform phenotype when challenged with iron shortage, lactose as sole carbon source and lingual
antimicrobial peptide (LAP) as a main defensin of milk. Reduced bacterial fitness could be related to LAP suggesting that bacterial adaptation to an intramammary lifestyle requires resistance to host
defensins present in mammary secretions, at least LAP.
E. coli strain 1303 and ECC-1470 lack particular virulence genes associated to mastitis isolates. To find out whether differences in gene expression may contribute to the ability of E. coli variants to cause mastitis, the transcriptome of E. coli model mastitis isolates 1303 and ECC-1470 were analyzed to
identify candidate genes involved in bacterium-host interaction, fitness or even pathogenicity during bovine mastitis.
DNA microarray analysis was employed to assess the transcriptional response of E. coli 1303 and
ECC-1470 upon cocultivation with MAC-T immortalized bovine mammary gland epithelial cells to
identify candidate genes involved in bacterium-host interaction. Additionally, the cell adhesion and invasion ability of E. coli strain 1303 and ECC-1470 was investigated. The transcriptonal response to the presence of host cells rather suggested competition for nutrients and oxygen between E. coli and MAC-T cells than marked signs of adhesion and invasion. Accordingly, mostly fitness traits that may also contribute to efficient colonization of the E. coli primary habitat, the gut, have been utilized by the mastitis isolates under these conditions. In this study, RNA-Seq was employed to assess the bacterial transcriptional response to milk whey.
According to our transcriptome data, the lack of positively deregulated and also of true virulence-associated determinants in both of the mastitis isolates indicated that E. coli might have adapted by other means to the udder (or at least mammary secretion) as an inflammatory site. We identified traits that promote bacterial growth and survival in milk whey. The ability to utilize citrate promotes fitness and survival of E. coli that are thriving in mammary secretions. According to our results, lactoferrin has only weak impact on E. coli in mammary secretions. At the same time bacterial determinants involved in iron assimilation were negatively regulated, suggesting that, at least during the first hours, iron assimilation is not a challenge to E. coli colonizing the mammary gland. It has been hypothesized that cellular iron stores cause temporary independency to extracellular accessible iron. According to our transcriptome data, this hypothesis was supported and places iron uptake
systems beyond the speculative importance that has been suggested before, at least during early
phases of infection. It has also been shown that the ability to resist extracytoplasmic stress, by oxidative conditions as well as host defensins, is of substantial importance for bacterial survival in mammary secretions.
In summary, the presented thesis addresses important aspects of host-pathogen interaction and
bacterial conversion to hostile conditions during colonization of the mastitis inflammatory site, the mammary gland.
Ziel dieser Studie ist die Darstellung des kurz- und mittelfristigen Outcomes von Hochrisiko-Patienten mit symptomatischer hochgradiger Aortenstenose nach TAVI sowie im Speziellen die Untersuchung des Outcomes von Patienten mit Low-Gradient-Aortenstenose nach TAVI.
Methoden: 50 Patienten (TAVI-Gruppe) wurde eine Aortenklappe über einen transapikalen (49 Patienten)- beziehungsweise transfemoralen (1 Patient) Zugangsweg implantiert. Es wurden perioperative- sowie unmittelbar postoperative und mittelfristige Daten nach 6 Monaten ermittelt. Dabei führten wir eine konventionelle- und spezielle echokardiographische Untersuchung-, den Lebensqualitätsfragebogen SF-36- sowie einen 6-Minuten-Gehtest durch und befragten die Patienten nach ihrem subjektiven Empfinden und Symptomatik. Eine Kontroll-Gruppe, die ebenfalls Hochrisiko-Patienten mit symptomatischer hochgradiger Aortenstenose beinhaltete, wurde konservativ-medikamentös therapiert und diente als Vergleichsgruppe. Zur näheren Untersuchung der Patienten mit Low-Gradient-Aortenstenose unterteilten wir die TAVI-Gruppe in LG-AS und HG-AS und bestimmten deren Outcome nach 6 Monaten.
Ergebnisse: Bei allen Patienten konnte die Aortenklappe erfolgreich implantiert werden. Die 30-Tages-Mortalität lag bei 4,0%, die Mortalität nach 6 Monaten bei 12%. Die echokardiographischen Untersuchungen ergaben im Follow-up eine signifikante Verbesserung der hämodynamischen Funktion (AVA: 0,69±0,15cm2 vs. 2,27±2,15cm2, mittlerer aortaler Druckgradient: 54,4±15,3mmHg vs. 13,3±5,5mmHg, maximale aortale Geschwindigkeit: 4,5±0,6m/s vs. 2,3±0,5m/s). Die Patienten zeigten 6 Monate nach TAVI eine signifikante Verbesserung der Lebensqualität, der Gehstrecke (189,4m vs. 362,9m) sowie eine subjektive Verbesserung ihrer Beschwerden. Die Patienten mit LG-AS hatten eine höhere Mortalität als Patienten ohne LG-AS (21.4% vs. 8,3%), die überlebenden Patienten zeigten jedoch ebenfalls eine signifikante Verbesserung der hämodynamischen Funktion, der Lebensqualität und der Gehstrecke.
Zusammenfassung: Diese Daten belegen gute kurz- und mittelfristige Ergebnisse bei Hochrisiko-Patienten nach TAVI und stellen eine Alternative zur konventionellen Therapie dar. Die Mortalität nach 6 Monaten war in der TAVI-Gruppe signifikant geringer als in der Kontroll-Gruppe, die myokardiale Funktion verbesserte sich und ein symptomatischer Benefit konnte gezeigt werden.
Es wurde bei Patienten mit LG-AS eine höhere Mortalität erfasst, die überlebenden Patienten zeigten jedoch eine signifikante Verbesserung der myokardialen Funktion, der Ausdauerfähigkeit sowie eine signifikant verbesserte Lebensqualität.
Analog zu den auf hochgeordneten Farbstoffarchitekturen in den biologischen Photosyntheseapparaten basierenden Energiekonversionssystemen sollte die exakte Einstellung zwischenmolekularer Wechselwirkungen auch in künstlichen Halbleitern eine entscheidende Rolle für die Weiterentwicklung organischer Elektronikmaterialien spielen. Für eine derartige, präzise Steuerung der nanoskaligen Anordnung in organischen Materialien erscheinen Merocyaninfarbstoffe wegen ihrer hochgerichteten, dipolaren Aggregation äußerst aussichtsreich. In diesem Zusammenhang war das Ziel der vorliegenden Arbeit die Ausnutzung funktionaler, stark selbstorganisierender Merocyanine, um eine gezielte Beeinflussung der Morphologie in der aktiven Schicht von BHJ-Solarzellen zu erreichen. Hierzu sollte zunächst eine umfangreiche Serie komplexer Merocyanine synthetisiert und vollständig charakterisiert werden. Im Folgenden wurde angestrebt, die optischen und elektrochemischen Eigenschaften der molekular gelösten Farbstoffe zu bestimmen und für ausgewählte, geeignete Strukturen das Selbstorganisationsverhalten im Detail zu studieren. Zuletzt sollte durch eine sorgfältige Optimierung der Prozessierungsbedingungen ein Transfer der in Lösung gefundenen, supramolekularen Strukturen in den Blend lösungsprozessierter BHJ-Solarzellen erreicht werden. Die organischen Elektronikbauteile wurden dabei im Arbeitskreis von Prof. Dr. Klaus Meerholz (Universität Köln) gefertigt und charakterisiert.
Zusammenfassend zeichnet die vorliegende Arbeit ein umfassendes Bild von der Synthese funktionaler Merocyanine, dem Studium ihrer molekularen und Selbstorganisationseigenschaften sowie ihrer Anwendung als p-Halbleitermaterialien in organischen Solarzellen. Der komplexe Molekülaufbau der dargestellten Farbstoffe führte dabei zur Ausbildung verschiedener Farbstofforganisate, deren Struktur sowohl in Lösung als auch teilweise im Festkörper aufgeklärt werden konnte. Die erfolgreiche Implementierung von H-aggregierten Spezies der Verbindung 67b in die aktive Schicht organischer BHJ-Solarzellen resultierte in der Bildung effizienter Perkolationspfade für Exzitonen und freie Ladungsträger, wodurch diese Bauteile merklich höhere Stromdichten generieren konnten und gegenüber Zellen ohne H-Spezies über 20 % gesteigerte Effizienz aufwiesen. Diese Befunde verifizieren die postulierte Hypothese, dass eine gezielte Einstellung der zwischenmolekularen Wechselwirkungen bei organischen Halbleitern zu einer Optimierung der Funktionalität organischer Elektronikmaterialien beitragen kann.
Herstellung monoklonaler Antikörper gegen das von Aspergillus fumigatus produzierte Gift Gliotoxin
(2014)
Diese Arbeit befasst sich mit der Herstellung monoklonaler Antikörper gegen Gliotoxin und eine Charakterisierung der Eigenschaften dieser Antikörper sowie ihrer Fab-Fragmente im ELISA sowie in Zellkulturen. Insgesamt konnten fünf monoklonale Antikörper generiert werden, die spezifisch für das Mykotoxin Gliotoxin waren.
Magnesiumphosphatschäume nehmen auf Grund ihrer guten Resorbierbarkeit, unter physiologischen Bedingungen, einen immer größeren Stellenwert als Knochenersatzmaterial ein. Ein weiterer Vorteil ist der neutrale pH-Wert den das entstehende Material besitzt. Magnesiumphosphatschäume besitzen eine hochporöse offenporige Struktur um zum einen den Knochen nachzuahmen und zum anderen die Steuerung und Bildung von Knochengewebe zu ermöglichen. In der vorliegenden Arbeit wurden die mechanischen Eigenschaften als auch die Zytokompatibilität der hergestellten Schäume untersucht.
Es wurden unterschiedliche Herstellungsverfahren genutzt um Magnesiumphosphatschäume zu erhalten. Zum einen das Replika- Verfahren, die dabei entstandenen Farringtonit Schäume (Mg3(PO4)2, Farringtonit) wurden zu Struvit ((NH4)Mg(PO4)•6H2O) umgewandelt bzw. mit PLGA infiltriert und auf ihre mechanische Eigenschaften hin untersucht. Zum anderen wurde ein proteinbasierter Schaumbildner verwendet. Die Zytokompatibilitätsprüfung wurde mit der Osteosarkomzelllinie MG-63 durchgeführt. Es erfolgte die Untersuchung der Zellproliferation und der Zellaktivität (WST). Zudem wurden Proben mittels Licht- und Elektronenmikroskopie analysiert. Die Feststellung der Proteinexpression erfolgte nach gelelektrophoretischer Auftrennung mittels Western Blot und PCR Analyse.
Techniken des computergestützten Wirkstoffdesigns spielen eine wichtige Rolle bei der Entwicklung neuer Wirkstoffe. Die vorliegende Arbeit befasst sich sowohl mit der Entwicklung als auch mit der praktischen Anwendung von Methoden des strukturbasierten Wirkstoffdesigns. Die Arbeit glieder sich daher in zwei Teile.
Der erste Teil beschäftigt sich mit der Entwicklung von empirischen Scoring-Funktionen, die eine Schlüsselrolle im strukturbasierten computergestützen Wirkstoffdesign einnehmen. Grundlage dieser Arbeiten sind die empirischen Deskriptoren und Scoring-Funktionen aus dem SFCscore-Programmpaket.
Dabei wurde zunächst untersucht, wie sich die Zusammensetzung der Trainingsdaten auf die Vorhersagen von empirischen Scoring-Funktionen auswirkt. Durch die gezielte Zusammenstellung eines neuen Trainingsdatensatzes wurde versucht, die Spannweite der Vorhersagen zu vergrößern, um so vor allem eine bessere Erkennung von hoch- und niedrig-affinen Komplexen zu erreichen. Die resultierende Funktion erzielte vor allem im niedrig-affinen Bereich verbesserte Vorhersagen.
Der zweite Themenkomplex beschäftigt sich ebenfalls mit der verbesserten Separierung von aktiven und inaktiven Verbindungen. Durch den Einsatz der Machine Learning-Methode RandomForest wurden dazu Klassifizierungsmodelle abgeleitet, die im Unterschied zu den klassischen Scoring-Funktionen keinen genauen Score liefern, sondern die Verbindungen nach ihrer potentiellen Aktivität klassifizieren.
Am Beispiel des mykobakteriellen Enzyms InhA konnte gezeigt werden, dass derartige Modelle den klassischen Scoring-Funktionen im Bezug auf die Erkennung von aktiven Verbindungen deutlich überlegen sind.
Der RandomForest-Algorithmus wurde im nächsten Schritt auch verwendet, um eine neue Scoring-Funktion zur Vorhersage von Bindungsaffinitäten abzuleiten. Diese Funktion wurde unter dem Namen SFCscoreRF in das SFCscore-Programmpaket implementiert. Die Funktion unterschiedet sich in einigen wesentlichen Punkten von den ursprünglichen SFCscore-Funktionen.
Zum einen handelt es sich beim RF-Algorithmus um eine nicht-lineare Methode, die im Unterschied zu den klassischen Methoden, die zur Ableitung von Scoring-Funktionen eingesetzt werden, nicht von der Additivität der einzelnen Deskriptoren ausgeht. Der Algorithmus erlaubt außerdem die Verwendung aller verfügbaren SFCscore-Deskriptoren, was eine deutlich umfassendere Repräsentation von Protein-Ligand-Komplexen als Grundlage des Scorings ermöglicht. Für die Ableitung von SFCscoreRF wurden insgesamt 1005 Komplexe im Trainingsdatensatz verwendet. Dieser Datensatz ist somit einer der größten, die bisher für die Ableitung einer empirischen Scoring-Funktion verwendet wurden.
Die Evaluierung gegen zwei Benchmark-Datensätze ergab deutlich bessere Vorhersagen von SFCscoreRF im Vergleich zu den ursprünglichen SFCscore-Funktionen. Auch im internationalen Vergleich mit anderen Scoring-Funktion konnten für beide Datensätze Spitzenwerte erreicht werden.
Weitere ausgiebige Testungen im Rahmen einer Leave-Cluster-Out-Validierung und die Teilnahme am CSAR 2012 Benchmark Exercise ergaben, dass auch SFCscoreRF Performanceschwankungen bei der Anwendung an proteinspezifischen Datensätzen zeigt - ein Phänomen, dass bei Scoring-Funktionen immer beobachtet wird. Die Analyse der CSAR 2012-Datensätze ergab darüber hinaus wichtige Erkenntnisse im Bezug auf Vorhersage von gedockten Posen sowie über die statistische Signifikanz bei der Evaluierung von Scoring-Funktionen.
Die Tatsache, dass empirische Scoring-Funktionen innerhalb eines bestimmten chemischen Raums trainiert wurden, ist ein wichtiger Faktor für die protein-abhängigen Leistungsschwankungen, die in dieser Arbeit beobachtet wurden. Verlässliche Vorhersagen sind nur innerhalb des kalibrierten chemischen Raums möglich. In dieser Arbeit wurden verschiedene Ansätze untersucht, mit denen sich diese ``Applicability Domain'' für die SFCscore-Funktionen definieren lässt. Mit Hilfe von PCA-Analysen ist es gelungen die ``Applicability Domain'' einzelner Funktionen zu visualisieren. Zusätzlich wurden eine Reihe numerischer Deskriptoren getestet, mit den die Vorhersageverlässlichkeit basierend auf der ``Applicability Domain'' abgeschätzt werden könnte. Die RF-Proximity hat sich hier als vielversprechender Ausgangspunkt für weitere Entwicklungen erwiesen.
Der zweite Teil der Arbeit beschäftigt sich mit der Entwicklung neuer Inhibitoren für das Chaperon Hsp70, welches eine vielversprechende Zielstruktur für die Therapie des multiplen Myeloms darstellt.
Grundlage dieser Arbeiten war eine Leitstruktur, die in einer vorhergehenden Arbeit entdeckt wurde und die vermutlich an einer neuartigen Bindestelle in der Interface-Region zwischen den beiden großen Domänen von Hsp70 angreift.
Die Weiterentwicklung und Optimierung dieser Leitstruktur, eines Tetrahydroisochinolinon-Derivats, stand zunächst im Vordergrund. Anhand detaillierter Docking-Analysen wurde der potentielle Bindemodus der Leitstruktur in der Interfaceregion von Hsp70 untersucht. Basierend auf diesen Ergebnissen wurde eine Substanzbibliothek erstellt, die von Kooperationspartnern innerhalb der KFO 216 synthetisiert und biologisch getestet wurde. Die Struktur-Wirkungsbeziehungen, die sich aus diesen experimentellen Daten ableiten lassen, konnten teilweise gut mit den erstellten Docking-Modellen korreliert werden. Andere Effekte konnten anhand der Docking-Posen jedoch nicht erklärt werden. Für die Entwicklung neuer Derivate ist deswegen eine umfassendere experimentelle Charakterisierung und darauf aufbauend eine Verfeinerung der Bindungsmodelle notwendig.
Strukturell handelt es sich bei Hsp70 um ein Zwei-Domänen-System, dass verschiedene allostere Zustände einnehmen kann. Um die Auswirkungen der daraus folgenden Flexibilität auf die Stabilität der Struktur und die Bindung von Inhibitoren zu untersuchen, wurden molekulardynamische Simulationen für das Protein durchgeführt.
Diese zeigen, dass das Protein tatsächlich eine überdurchschnittlich hohe Flexibilität aufweist, die vor allem durch die relative Bewegung der beiden großen Domänen zueinander dominiert wird. Die Proteinkonformation die in der Kristallstruktur hscaz beobachtet wird, bleibt jedoch in ihrer Grundstruktur in allen vier durchgeführten Simulationen erhalten. Es konnten hingegen keine Hinweise dafür gefunden werden, dass die Mutationen, welche die für die strukturbasierten Arbeiten verwendete Kristallstruktur im Vergleich zum Wildtyp aufweist, einen kritischen Einfluss auf die Gesamtstabilität des Systems haben.
Obwohl die Interface-Region zwischen NBD und SBD also in allen Simulationen erhalten bleibt, wird die Konformation in diesem Bereich doch wesentlich durch die Domänenbewegung beeinflusst und variiert. Da dieser Proteinbereich den wahrscheinlichsten Angriffspunkt der Tetrahydroisochinolinone darstellt, wurde der Konformationsraum detailliert untersucht. Wie erwartet weist die Region eine nicht unerhebliche Flexibilität auf, welche zudem, im Sinne eines ``Induced-Fit''-Mechanismus, durch die Gegenwart eines Liganden (Apoptozol) stark beeinflusst wird. Es ist daher als sehr wahrscheinlich anzusehen, dass die Dynamik der Interface-Region auch einen wesentlichen Einfluss auf die Bindung der Tetrahydroisochinolinone hat. Molekuardynamische Berechnungen werden deswegen auch in zukünftige Arbeiten auf diesem Gebiet eine wichtige Rolle spielen.
Die Analysen zeigen zudem, dass die Konformation der Interface-Region eng mit der Konformation des gesamten Proteins - vor allem im Bezug auf die relative Stellung von SBD und NBD zueinander - verknüpft ist. Das untermauert die Hypothese, dass die Interface-Bindetasche einen Angriffspunkt für die Inhibtion des Proteins darstellt.
In this work the synthesis of dendritic macromolecules and small redox cascades was reported and studies of their energy and electron transfer properties discussed.
The chromophores in the dendrimers and the redox cascades are linked via triazoles, which were built up by CuAAC. Thereby, a synthetic concept based on building blocks was implemented, which allowed the exchange of all basic components. Resulting structures include dendrimers composed exclusively of TAAs (G1–G3), dendrimers with an incorporated spirobifluorene core (spiro-G1 and spiro-G2) and the donor-acceptor dendrimer D-A-G1, in which the terminal groups are exchanged by NDIs.
Furthermore, a series of model compounds was synthesised in order to achieve a better understanding of the photophysical processes in the dendrimers.
A modification of the synthetic concept for dendrimers enabled the synthesis of a series of donor-acceptor triads (T-Me, T-Cl and T-CN) consisting of two TAA donors and one NDI acceptor unit. The intermediate TAA chromophore ensured a downhill redox gradient from the NDI to the terminal TAA, which was proved by cyclic voltammetry measurements. The redox potential of the intermediate TAA was adjusted by different redox determining substituents in the “free” p-position of the TAA. Additionally, two dyads (Da and Db) were synthesised which differ in the junction of the triazole to the TAA or the NDI, respectively. In these cascades a nodal-plane along the N-N-axes in the NDI and a large twist angle between the NDI and the N-aryl substituent guaranteed a small electronic coupling.
The photophysical investigations of the dendrimers focused on the homo-energy transfer properties in the TAA dendrimers G1–G3. Steady-state emission spectroscopy revealed that the emission takes place from a charge transfer state. The polar excited state resulted in a strong Stokes shift of the emission, which in turn led to a small spectral overlap integral between the absorption of the acceptor and the emission of the donor in the solvent relaxed state. According to the Förster theory, the overlap integral strongly determines the energy transfer rate. Fluorescence up-conversion measurements showed a strong and rapid initial fluorescence anisotropy decay and a much slower decrease on the longer time scale. The experiment revealed a fast energy transfer in the first 2 ps followed by a much slower energy hopping. Time resolved emission spectra (TRES) of the model compound M indicated a solvent relaxation on the same time scale as the fast energy transfer.
The Förster estimation of energy transfer rates in G1 explains fast energy transfer in the vibrotionally relaxed state before solvent relaxation starts. Thereby, the emission spectrum of G1 in cyclohexane served as the time zero spectrum. Thus, solvent relaxation and fast energy transfer compete in the first two ps after excitation and it is crucial to discriminate between energy transfer in the Franck-Condon and in the solvent relaxed state. Furthermore, this finding demonstrates that fast energy transfer occurs even in charge transfer systems where a large Stokes shift prevents an effective spectral overlap integral if there is a sufficient overlap integral in before solvent relaxation.
Energy transfer upon excitation was also observed in the spiro dendrimers spiro-G1 and spiro-G2 and identified by steady-state emission anisotropy measurements. It was assumed that the energy in spiro-G1 is completely distributed over the entire molecule while the energy in spiro-G2 is probably distributed over only one individual branch. This finding was based on a more polarised emission of spiro-G2 compared to spiro-G1. This issue has to be ascertained by e.g. time resolved emission anisotropy measurements in further energy transfer studies.
Concerning the electron transfer properties of TAA-triazole systems the radical cations of G1–G2, spiro-G1 and spiro-G2 and of the model compound M were investigated by steady-state absorption spectroscopy. Experiments showed that the triazole bridge exhibits small electronic communication between the adjacent chromophores but still possesses sufficient electronic coupling to allow an effective electron transfer from one chromophore to the other.
Due to the high density of chromophores, their D-A-D structure and their superficial centrosymmetry, the presented dendrimers are prospective candidates for two-photon absorption applications.
The dyads, triads and the donor-acceptor dendrimer D-A-G1 were investigated regarding their photoinduced electron transfer properties and the effects that dominate charge separation and charge recombination in these systems.
The steady-state absorption spectra of all cascades elucidated a superposition of the absorption characteristics of the individual subunits and spectra indicated that the chromophores do not interact in the electronic ground state.
Time resolved transient absorption spectroscopy of the cascades was performed in the fs- and ns-time regime in MeCN and toluene as solvent. Measurements revealed that upon with 28200 cm-1 (355) nm and 26300 cm-1 (380 nm), respectively, an electron is transferred from the TAA towards the NDI unit yielding a CS state. In the triads at first a CS1 state is populated, in which the NDI is reduced and the intermediate TAA1 is oxidised. Subsequently, an additional electron transfer from the terminal TAA2 to TAA1 led to the fully CS2 state. Fully CS states of the dyads and triads exhibit lifetimes in the ns-time regime. In contrast for Db in MeCN, a lifetime of 43 ps was observed for the CS state together with the population of a 3NDI state. The signals of the other CS states decay biexponentially, which is a result of the presence of the 1CS and the 3CS states. While magnetic field dependent measurements of Db did not show an effect due to the large singlet-triplet splitting, T-CN exhibited a strong magnetic field dependence which is an evidence for the 1CS/3CS assignment. Further analysis of the singlet-triplet dynamics are required and are currently in progress.
Charge recombination occurred in the Marcus inverted region for compounds solved in toluene and in the Marcus normal region for MeCN as solvent. However, a significant inverted region effect was observed only for Db. Triads are probably characterised by charge recombination rates in the inverted and in the normal region near to the vertex of the Marcus parabola. Hence the inverted region effect is not pronounced and the rate charge recombination rates are all in the same magnitude. However, compared to the charge recombination rate of Db the enlarged spatial distance between the terminal TAA and the NDI in the fully CS2 states in the triads resulted in reduced charge recombination rates by ca. one order of magnitude.
More important than a small charge recombination rate is an overall lifetime of the CS states and this lifetime can significantly be enhanced by the population of the 3CS state. The reported results reveal that a larger singlet-triplet splitting in the dyads led to a CS state lifetime in the us time regime while a lifetime in the ns-time regime was observed in cases of the triads. Moreover, the singlet-triplet splitting was found to be solvent dependent in the triads, which is a promising starting point for further investigations concerning singlet-triplet splitting.
The donor-acceptor dendrimer D-A-G1 showed similar characteristics to the dyads. The generation of a CS state is assumed due to a clear NDI radical anion band in the transient absorption spectrum. Noteworthy, the typical transient absorption band of the TAA radical cation is absent for D A-G1 in toluene. Bixon-Jortner analysis yielded a similar electronic coupling in D-A-G1 compared to the dyads. However, the charge recombination rate is smaller than of Db due to a more energetic CS state, which in the inverted region slows down charge recombination. In combination a singlet-triplet splitting similar to the dyads prolongs the CS state lifetime up to 14 us in diluted solution. Both effects result in an even better performance of D-A-G1 concerning energy conversion. D A-G1 is therefore a promising key structure for further studies on light harvesting applications. In a prospective study a second generation donor-acceptor dendrimer D-A-G2 might be an attractive structure accessible by “click reaction” of 13 and 8. D-A-G2 is expected to exhibit a downhill oriented gradient of CS states as assumed from the CV studies on G1–G3.
Virulent Agrobacterium tumefaciens strains transfer and integrate a DNA region of the tumor-inducing (Ti) plasmid, the T-DNA, into the plant genome and thereby cause crown gall disease. The most essential genes required for crown gall development are the T-DNA-encoded oncogenes, IaaH (indole-3-acetamide hydrolase), IaaM (tryptophan monooxygenase) for auxin, and Ipt (isopentenyl transferase) for cytokinin biosynthesis. When these oncogenes are expressed in the host cell, the levels of auxin and cytokinin increase and cause cell proliferation. The aim of this study was to unravel the molecular mechanisms, which regulate expression of the agrobacterial oncogenes in plant cells. Transcripts of the three oncogenes were expressed in Arabidopsis thaliana crown galls induced by A. tumefaciens strain C58 and the intergenic regions (IGRs) between their coding sequences (CDS) were proven to have promoter activity in plant cells. These promoters possess eukaryotic sequence structures and contain cis-regulatory elements for the binding of plant transcription factors. The high-throughput protoplast transactivation (PTA) system was used and identified the Arabidopsis thaliana transcription factors WRKY18, WRKY40, WRKY60 and ARF5 to activate the Ipt oncogene promoter. No transcription factor promoted the activity of the IaaH and IaaM promoters, despite the fact that the sequences contained binding elements for type B ARR transcription factors. Likewise, the treatment of Arabidopsis mesophyll protoplasts with cytokinin (trans-zeatin) and auxin (1-NAA) exerted no positive effect on IaaH and IaaM promoter activity. In contrast, the Ipt promoter strongly responded to a treatment with auxin and only modestly to cytokinin. The three Arabidopsis WRKYs play a role in crown gall development as the wrky mutants developed smaller crown galls than wild-type plants. The WRKY40 and WRKY60 genes responded very quickly to pathogen infection, two and four hours post infection, respectively. Transcription of the WRKY18 gene was induced upon buffer infiltration, which implicates a response to wounding. The three WRKY proteins interacted with ARF5 and with each other in the plant nucleus, but only WRKY40 together with ARF5 increased activation of the Ipt promoter. Moreover, ARF5 activated the Ipt promoter in an auxin-dependent manner. The severe developmental phenotype of the arf5 mutant prevented studies on crown gall development, nevertheless, the reduced crown gall growth on the transport inhibitor response 1 (TIR1) tir1 mutant, lacking the auxin sensor, suggested that auxin signaling is required for optimal crown gall development. In conclusion, A. tumefaciens recruits the pathogen defense related WRKY40 pathway to activate Ipt expression in T-DNA-transformed plant cells. IaaH and IaaM gene expression seems not to be controlled by transcriptional activators, but the increasing auxin levels are signaled via ARF5. The auxin-depended activation of ARF5 boosts expression of the Ipt gene in combination with WRKY40 to increase cytokinin levels and induce crown gall development.
Veränderungen der Herzratenvariabilität unter auditorischer Belastung ohne und mit Störgeräusch
(2014)
Einleitung: Die Messung der Herzratenvariabilität (HRV), d.h. der ständigen Variation des Herzschlags, ermöglicht eine Beurteilung der autonomen Funktion des Herzens und die Erfassung physischer und psychischer Belastungszustände. In der Audiologie werden Patienten anhand ihrer Leistung in audiometrischen Testverfahren beurteilt, vermehrte Höranstrengung kommt hier jedoch unzureichend zum Ausdruck. Die folgende Studie sollte klären, ob auditorische Belastung in Form eines Sprachverständnistests mit der HRV sensitiv erfasst werden kann und ob Hörsituationen mit Störgeräuschen eine höhere Stressantwort hervorrufen.
Methoden: Die Datenerhebung erfolgte an 24 jungen hörgesunden Probanden, wobei diese während der HRV-Aufzeichnung Wortlisten des Freiburger Sprachtests in Ruhe und unter Zuschaltung eines Störgeräusches (Rauschen) schriftlich wiedergeben sollten. Vor und nach der Testung erfolgten jeweils Ruhemessungen.
Ergebnisse: Auditorische Belastungen konnten mithilfe der HRV zuverlässig erfasst und von Ruhebedingungen unterschieden werden. Die Testanforderungen riefen Parameterveränderungen im Sinne einer Koaktivierung von Sympathikus und Parasympathikus hervor, wobei dieses Muster Ausdruck erhöhter Aufmerksamkeit zu sein scheint. Ein signifikanter HRV-Unterschied zwischen den beiden Schwierigkeitsgraden zeigte sich nicht. Geschlecht der Probanden und Reihenfolge der Testphasen spielten eine untergeordnete Rolle.
Schlussfolgerungen: Die HRV-Aufzeichnung scheint geeignet, Höranstrengung bei gesunden Personen objektiv zu messen. Weitere Studien an größeren Kontroll- und Patientenstichproben sollten klären, ob diese zur Verbesserung der Diagnostik und Therapie von Hörbeeinträchtigten beitragen kann.
Dynamic interactions and their changes are at the forefront of current research in bioinformatics and systems biology. This thesis focusses on two particular dynamic aspects of cellular adaptation: miRNA and metabolites.
miRNAs have an established role in hematopoiesis and megakaryocytopoiesis, and platelet miRNAs have potential as tools for understanding basic mechanisms of platelet function. The thesis highlights the possible role of miRNAs in regulating protein translation in platelet lifespan with relevance to platelet apoptosis and identifying involved pathways and potential key regulatory molecules. Furthermore, corresponding miRNA/target mRNAs in murine platelets are identified. Moreover, key miRNAs involved in aortic aneurysm are predicted by similar techniques. The clinical relevance of miRNAs as biomarkers, targets, resulting later translational therapeutics, and tissue specific restrictors of genes expression in cardiovascular diseases is also discussed.
In a second part of thesis we highlight the importance of scientific software solution development in metabolic modelling and how it can be helpful in bioinformatics tool development along with software feature analysis such as performed on metabolic flux analysis applications. We proposed the “Butterfly” approach to implement efficiently scientific software programming. Using this approach, software applications were developed for quantitative Metabolic Flux Analysis and efficient Mass Isotopomer Distribution Analysis (MIDA) in metabolic modelling as well as for data management. “LS-MIDA” allows easy and efficient MIDA analysis and, with a more powerful algorithm and database, the software “Isotopo” allows efficient analysis of metabolic flows, for instance in pathogenic bacteria (Salmonella, Listeria). All three approaches have been published (see Appendices).
Embryonale Stammzellen (ESCs) sind durch zwei charakteristische Eigenschaften definiert. Neben einer kontinuierlichen Selbsterneuerungskapazität weisen ESCs die Fähigkeit auf, in alle Zelltypen der drei Keimblätter differenzieren zu können. Diese Eigenschaften werden unter anderem durch ein Netzwerk wichtiger Pluripotenzfaktoren als auch durch epigenetische Mechanismen reguliert, welche die Transkription von Pluripotenz- und Differenzierungsgenen kontrollieren.
In murinen ESCs sind an der Repression von Differenzierungsgenen auch Polycomb group (PcG) Proteine beteiligt. Diese Proteine bauen zwei Chromatin-modifizierende Komplexe auf, die als Polycomb repressive complex 1 bzw. 2 (PRC1 bzw. PRC2) bezeichnet werden. Nach dem klassischen Modell der Polycombfunktion, katalysieren PRC1 und PRC2 gemeinsam zwei charakteristische Histonmodifikationen, die zur Repression PRC-spezifischer Zielgene beitragen. Zahlreiche Studien in den letzten Jahren belegen, dass der Proteinaufbau der PRC1 Komplexe stark variieren kann, wobei die Familie der Polycomb group RING finger (Pcgf) Proteine eine wichtige Rolle spielt. In diesem Zusammenhang definieren einzelne Pcgf Paraloge (Pcgf1 – 6) verschiedene PRC1 Varianten (PRC1.1 – 1.6), die Komplex-spezifische Bindestellen im Genom aufweisen. Diese Erkenntnisse lassen auf unterschiedliche Mechanismen der PRC1 Varianten und Pcgf Paralog-spezifische Funktionen schließen, die zum jetzigen Zeitpunkt nur wenig erforscht sind.
Für manche Pcgf Paraloge sind wichtige Rollen in verschiedenen Stammzelltypen und während der iPS Reprogrammierung bekannt. Pcgf1 (Nspc1), Pcgf2 (Mel18) und Pcgf4 (Bmi1) zeigen eine Funktion in verschiedenen adulten Stammzellen. Pcgf4 spielt darüber hinaus eine wichtige Rolle in der murinen iPS Reprogrammierung. Für Pcgf6 (Mblr) wird eine Pluripotenz-assoziierte Funktion angenommen, denn Pcgf6 ist das einzige Pcgf Paralog, das eine erhöhte Expression in murinen ESCs aufweist, die jedoch im Verlauf der ESC-Differenzierung absinkt. Außerdem zeigen murine Pcgf6 KD ESCs eine verminderte Expression der Pluripotenzgene Oct4, Sox2 und Nanog, eine De-Repression mesodermaler und Testes-spezifischer Gene als auch eine erhöhte Tendenz zur hämatopoetischen Differenzierung. Wie genau Pcgf6 an der Regulation dieser Prozesse in murinen ESCs beteiligt ist, ist nicht bekannt.
In der hier vorliegenden Dissertation wurde die Funktion von Pcgf6 in der murinen iPS Reprogrammierung untersucht. Da bereits für Pcgf4 eine Rolle in der Reprogrammierung somatischer Zellen gezeigt wurde und Pcgf6 eine erhöhte Expression in ESCs aufweist, wurde auch für Pcgf6 eine Funktion in der iPS Reprogrammierung angenommen. Zunächst konnte in dieser Arbeit gezeigt werden, dass Pcgf6 während der iPS Reprogrammierung verstärkt exprimiert wird und in iPS Zellen eine ESC-ähnliche Expression aufweist. Darüber hinaus konnte Pcgf6 in Kombination mit Oct4, Klf4 und c-Myc spezifisch den Transkriptionsfaktor Sox2 in der iPS Reprogrammierung ersetzen. Zudem wurden für OPKM-induzierte iPS Zellen charakteristische Eigenschaften pluripotenter Zellen nachgewiesen. Außerdem konnte eine Rolle von Pcgf6 als Enhancer-Faktor für die iPS Reprogrammierung ausgeschlossen werden, da die Überexpression von Pcgf6 zusammen mit den OSKM Faktoren keine additiven Effekte auf die Reprogrammierungseffizienz erzielte. Im Gegensatz dazu führte der Knockdown (KD) von Pcgf6 in embryonalen Mausfibroblasten (MEFs) zu verminderten Effizienzen nach OSKM Reprogrammierung. Darüber hinaus handelte es sich bei der Mehrheit der AP+ Kolonien, die unter Pcgf6 KD Konditionen entstanden, um partiell-reprogrammierte iPS Zellen.
Zusammengefasst zeigen die Ergebnisse der hier vorliegenden Arbeit, dass Pcgf6 ein neuer und essentieller Faktor der iPS Reprogrammierung ist, der in Kombination mit Oct4, Klf4 und c-Myc spezifisch den Transkriptionsfaktor Sox2 ersetzen kann.
More warning Advanced Driver Assistance Systems (ADAS) will be integrated into the European vehicles in the coming years, due to the ongoing progress on the way to automated driving and Euro NCAP requirements. Furthermore, upcoming technologies like Car-2-X will extend the sensory horizon of ADAS and enable the possibility to warn drivers earlier against various hazards than today. Regarding this progress, increasing numbers of different ADAS warnings will be communicated to the driver. In this context, an important question is how multiple ADAS warnings can be integrated into the Human Machine Interface (HMI) of vehicles and which warning elements are needed to ensure warning acceptance, efficiency and understandability seen from the driver’s point of view.
Two driving simulator studies were conducted and the effects of specific warning elements examined to develop a concept for the integration of upcoming warning ADAS, which focuses on early collision warnings. The implemented early warnings were defined with a warning onset of approximately two seconds before the last possible warning onset. Main questions were whether and how drivers profit from warning direction cues and/or warning object cues for their response to a hazard, and how these cues affect the acceptance of an integrated warning ADAS approach. Furthermore, it was analyzed whether a generalized warning can be used for a cluster of different ADAS concerning the group “warning of collisions”. Therefore critical scenarios in rural and urban surroundings were evaluated, including frontal and lateral (intersections) scenarios. Unnecessary warnings and false alarms have also been taken into account.
The results indicate that early warning direction cues have a high potential to assist drivers with an ADAS warning cluster which covers warning of collisions. In contrast, warning object cues seem to be less important for the drivers’ performance and acceptance regarding early collision warnings. According to these findings, this thesis provides recommendations which warning elements should be included into future ADAS warnings in favor of an integrated warning approach.
This dissertation presents controller design methodologies for a formation of cooperative mobile robots to perform trajectory tracking and convoy protection tasks. Two major problems related to multi-agent formation control are addressed, namely the time-delay and optimality problems. For the task of trajectory tracking, a leader-follower based system structure is adopted for the controller design, where the selection criteria for controller parameters are derived through analyses of characteristic polynomials. The resulting parameters ensure the stability of the system and overcome the steady-state error as well as the oscillation behavior under time-delay effect. In the convoy protection scenario, a decentralized coordination strategy for balanced deployment of mobile robots is first proposed. Based on this coordination scheme, optimal controller parameters are generated in both centralized and decentralized fashion to achieve dynamic convoy protection in a unified framework, where distributed optimization technique is applied in the decentralized strategy. This unified framework takes into account the motion of the target to be protected, and the desired system performance, for instance, minimal energy to spend, equal inter-vehicle distance to keep, etc.
Both trajectory tracking and convoy protection tasks are demonstrated through simulations and real-world hardware experiments based on the robotic equipment at Department of Computer Science VII, University of Würzburg.
In contrast to c-Myc, a deregulated expression of the MYCN gene is restricted to human neuroendocrine tumours. In most cases, the excessive activity of N-Myc results from a MYCN amplification. In neuroblastoma, amplification of MYCN is a predictor of poor prognosis and resistance to therapy. The inability to target the N-Myc protein directly necessitates the search for alternative targets. This project aimed at identifying genes specifically required for growth and survival of cells that express high levels of N-Myc using high-throughput shRNA screening combined with next generation sequencing. The identification and analysis of these genes will shed light on functional interaction partners of N-Myc.
We screened a shRNA library containing 18,327 shRNAs and identified 148 shRNAs, which were selectively depleted in the presence of active N-Myc. In addition, shRNAs targeting genes that are involved in p53 and ARF turnover and apoptosis were depleted in the cell population during the screen. These processes are known to affect N-Myc-mediated apoptosis. Consequently, these results biologically validated the screen. The 148 shRNAs that showed a significant synthetic lethal interaction with high levels of N-Myc expression were further analysed using the bioinformatics program DAVID. We found an enrichment of shRNAs that target genes involved in specific biological processes. For example, we validated synthetic lethal interactions for genes such as, THOC1, NUP153 and LARP7, which play an important role in the process of RNA polymerase II-mediated transcription elongation. We also validated genes that are involved in the neddylation pathway.
In the screen we identified Cullin 3, which is a component of the BTB-CUL3-Rbx1 ubiquitin ligase that is involved in the turnover of Cyclin E. Depletion of cullin 3 and activation of N-Myc was found to synergistically increase Cyclin E expression to supraphysiological levels, inducing S-phase arrest and a strong DNA damage response.
Together with results from a proteomics analysis of N-Myc associated proteins, our results lead us to the following hypothesis: In a neuroblastoma cell, the high levels of N-Myc result in a conflict between RNA polymerase II and the replication machinery during S-phase. The newly identified interaction partners of N- Myc are required to solve this conflict. Consequently, loss of the interaction leads to a massive DNA damage and the induction of apoptosis. In addition, inhibition or depletion of the essential components of the neddylation pathway also results in an unresolvable problem during S-phase.
Neisseria gonorrhoeae is a human-specific pathogen that causes gonorrhea. It is defined as a super bacterium by the WHO due to the emergence of gonococci that are resistant to a variety of antibiotics and a rapidly increasing infection incidence. Genome-wide investigation of neisserial gene essentiality and novel virulence factors is urgently required in order to identify new targets for anti-neisserial therapeutics. To identify essential genes and new virulence factors, a high-density mutant library in N. gonorrhoeae MS11 was generated by in vitro transposon mutagenesis. The transposon library harbors more than 100,000 individual mutants, a density that is unprecedented in gonococcal research. Essential genes in N. gonorrhoeae were determined by enumerating frequencies of transposon insertion sites (TIS) with Illumina deep sequencing (Tn-seq). Tn-seq indicated an average distance between adjacent TIS of 25 bp. Statistical analysis unequivocally demonstrated 781 genes that were significantly depleted in TIS and thus are essential for Neisseria survival. A subset of the genes was experimentally verified to comprise essential genes and thus support the outcome of the study. The hereby identified candidate essential genes thus may constitute excellent targets for the development of new antibiotics or vaccines.
In a second study, the transposon mutant library was applied in a genome-scale “negative-selection strategy” to identify genes that are involved in low phosphate-dependent invasion (LPDI). LPDI is dependent on the Neisseria porin subtype PorBIA which acts as an epithelial cell invasin in absence of phosphate and is associated with severe pathogenicity in disseminated gonococcal infections (DGI). Tn-seq demonstrated 98 genes, which were involved in adherence to host cells and 43 genes involved in host cell invasion. E.g. the hypothetical protein NGFG_00506, an ABC transporter ATP-binding protein NGFG_01643, as well as NGFG_04218 encoding a homolog of mafI in N. gonorrhoeae FA1090 were experimentally verified as new invasive factors in LPDI. NGFG_01605, a predicted protease, was identified to be a common factor involved in PorBIA, Opa50 and Opa57-mediated neisserial engulfment by the epithelial cells. Thus, this first systematic Tn-seq application in N. gonorrhoeae identified a set of previously unknown N. gonorrhoeae invasive factors which demonstrate molecular mechanisms of DGI.
Pocket-Proteine und E2F-Transkriptionsfaktoren regulieren die Expression von Zellzyklus-assoziierten Genen und spielen eine zentrale Rolle bei der Koordination der Zellteilung, Differenzierung und Apoptose. Störungen dieser Signalwege tragen zur Entstehung zahlreicher Tumorentitäten beim Menschen bei. Trotz der intensiven Untersuchung der Zellzyklusregulation sind viele Details noch unverstanden.
Der LIN-Komplex (LINC / DREAM) ist ein kürzlich entdeckter humaner Multiprotein-komplex, welcher dynamisch mit Pocket-Proteinen und E2F-Transkriptionsfaktoren interagiert. Eine essentielle Komponente des LIN-Komplexes ist das LIN9-Protein. Um die Funktion dieses Proteins bei der Zellzyklusregulation und Tumorentstehung genauer untersuchen zu können, wurde in unserer Arbeitsgruppe ein konditionelles Lin9-Knockout-Mausmodell etabliert.
Primäres Ziel der Arbeit war es, den Phänotyp embryonaler Fibroblasten (MEFs) aus diesen Mäusen zu charakterisieren. Bereits kurz nach Inaktivierung von Lin9 konnte ein stark verlangsamtes Zellwachstums beobachtet werden. In Lin9-depletierten MEFs wurden multiple mitotische Defekte detektiert, die u. a. strukturelle Auffälligkeiten des Spindelapparates, aberrante Zellkerne, Störungen der Chromosomensegregation sowie zytokinetische Defekte umfassen und in einer dramatischen Zunahme polyploider und aneuploider Zellen resultieren. Im Langzeitverlauf führen diese erheblichen Aberrationen zu einer vorzeitigen zellulären Seneszenz. Wird diese durch das Large T-Protoonkogen durchbrochen, können sich MEFs an den Verlust von Lin9 adaptieren, zeigen dann jedoch eine hochgradige genomische Instabilität und Substrat-unabhängiges Wachstum im Weichagar als Zeichen onkogener Transformation.
Im zweiten Abschnitt der vorliegenden Arbeit wurde die Genexpression in Lin9-defizienten MEFs mittels quantitativer Real Time-PCR untersucht um zu klären, ob die beschriebenen Defekte auf Veränderungen der transkriptionellen Aktivität zurück-zuführen sind. Dabei wurde eine erhebliche Reduktion der Expressionslevel mitotischer Gene nach Verlust von Lin9 beobachtet. Des Weiteren wurden zur Klärung der zu Grunde liegenden molekularen Mechanismen Chromatin-Immunpräzipitations-Experimente (ChIP) durchgeführt. Im Vergleich zu Kontrollzellen wurden dabei in Lin9-defizienten Zellen signifikante epigenetische Veränderungen bezüglich aktivierender Histon-Modifikationen an den Promotoren mitotischer Lin9-Zielgene festgestellt.
Im letzten Abschnitt der Arbeit sollten die Auswirkungen des heterozygoten Verlustes von Lin9 analysiert werden. Dabei zeigte sich, dass Lin9-haploinsuffiziente Zellen normal proliferieren, obwohl die Expression verschiedener G2/M-Gene leicht vermindert war. Es wurde jedoch eine Schwächung des mitotischen Spindelkontrollpunktes und in der Folge über mehrere Zellgenerationen eine Zunahme polyploider Zellen beobachtet. Mit Weichagar-Assays konnte gezeigt werden, dass bereits der heterozygote Verlust des Lin9-Gens zur onkogenen Transformation beiträgt.
Zusammengenommen dokumentieren diese Studien, dass LIN9 eine entscheidende Bedeutung bei der Regulation von Zellzyklus-assoziierten Genen spielt und sowohl einen essentiellen Faktor für die Zellproliferation darstellt als auch durch die Gewährleistung genomischer Stabilität tumorsuppressive Eigenschaften aufweist.
Localization microscopy is a class of super-resolution fluorescence microscopy techniques. Localization microscopy methods are characterized by stochastic temporal isolation of fluorophore emission, i.e., making the fluorophores blink so rapidly that no two are
likely to be photoactive at the same time close to each other. Well-known localization microscopy methods include dSTORM}, STORM, PALM, FPALM, or GSDIM. The biological community has taken great interest in localization microscopy, since it can enhance the resolution of common fluorescence microscopy by an order of magnitude at little experimental cost.
However, localization microscopy has considerable computational cost since millions of individual stochastic emissions must be located with nanometer precision. The computational cost of this evaluation, and the organizational cost of implementing the complex algorithms, has impeded adoption of super-resolution microscopy for a long time.
In this work, I describe my algorithmic framework for evaluating localization microscopy data.
I demonstrate how my novel open-source software achieves real-time data evaluation, i.e., can evaluate data faster than the common experimental setups can capture them.
I show how this speed is attained on standard consumer-grade CPUs, removing the need for computing on expensive clusters or deploying graphics processing units.
The evaluation is performed with the widely accepted Gaussian PSF model and a Poissonian maximum-likelihood noise model.
I extend the computational model to show how robust, optimal two-color evaluation is realized, allowing correlative microscopy between multiple proteins or structures. By employing cubic B-splines, I show how the evaluation of three-dimensional samples can be made simple and robust, taking an important step towards precise imaging of micrometer-thick samples.
I uncover the behavior and limits of localization algorithms in the face of increasing emission densities.
Finally, I show up algorithms to extend localization microscopy to common biological problems.
I investigate cellular movement and motility by considering the in vitro movement of myosin-actin filaments. I show how SNAP-tag fusion proteins enable imaging with bright and stable organic fluorophores in live cells. By analyzing the internal structure of protein clusters, I show how localization microscopy can provide new quantitative approaches beyond pure imaging.
Phospholamban (PLN) reguliert in der Herzmuskelzelle die Aktivität der Kalzium-ATPase SERCA2a und damit maßgeblich die Kinetik des myozytären Kalzium-Kreislaufs. PLN liegt im Herz in Form von Monomeren und Pentameren vor, wobei angenommen wird, dass nur die Monomere die Aktivität der SERCA2a durch direkte Interaktion hemmen. Die Funktion der Pentamere ist noch immer unklar. In der vorliegenden Arbeit sollte untersucht werden, ob PLN-Pentamere für die PKA-abhängige Phosphorylierung des PLN und damit für die Regulation der PLN-Aktivität von Bedeutung sein können.
Mit Hilfe transfizierter HEK293AD-Zellen und verschiedener PLN-Mutanten wurde gezeigt, dass sowohl PLN-Monomere als auch -Pentamere durch die PKA phosphoryliert werden, wobei die Phosphorylierung der Monomere in Anwesenheit von Pentameren geringer ist und verzögert abläuft. Ohne Pentamer war die Phosphorylierung der Monomere dagegen bereits basal und nach moderater PKA-Stimulation stärker. Ursache dafür schien eine höhere Affinität der PKA für PLN-Pentamere als für Monomere zu sein. Darüber hinaus konnte gezeigt werden, dass nicht nur PLN-Monomere sondern auch das PLN-Pentamer mit der SERCA2a interagieren und das Oligomer im Gegensatz zum PLN-Monomer nach PLN-Phosphorylierung zu einem kleinen Anteil an die SERCA2a gebunden bleibt. Auch spiegelten sich die unterschiedlichen Phosphorylierungsmuster von PLN-Pentamer und Monomer in den SERCA2a-Aktivitäten wieder. Messungen der SERCA2a-Aktivität in Mäuseherzen mit (Wildtyp und TgPLN) und ohne (TgAFA-PLN) PLN-Pentamere zeigten, dass Wildtyp-PLN und TgPLN die SERCA2a stärker inhibieren als TgAFA-PLN, was auf die stärkere basale Phosphorylierung des TgAFA-PLN zurückzuführen war. Nach PKA-Stimulation war der Anstieg der Enzymaktivität in Anwesenheit von TgPLN fast dreimal höher als in TgAFA-PLN. Analog zeigte TgPLN eine deutlichere Steigerung der Phosphorylierung der PLN-Monomere als TgAFA-PLN.
Zusammenfassend konnte gezeigt werden, dass PLN-Pentamere durch Hemmung der Monomer-Phosphorylierung deren Aktivität erhöhen mit der Folge einer verstärkten Inhibition der SERCA2a. Da die inhibitorische Wirkung durch PKA-Stimulation vollständig aufgehoben werden kann, erhöhen die Pentamere die Regulationsmöglichkeiten der SERCA2a-Aktivität.
Adipose tissue defects and related pathologies still represent major challenges in reconstructive surgery. Based on to the paradigm ‘replace with alike’, adipose tissue is considered the ideal substitute material for damaged soft tissue [1-3]. Yet the transfer of autologous fat, particularly larger volumes, is confined by deficient and unpredictable long term results, as well as considerable operative morbidity at the donor and recipient site [4-6], calling for innovative treatment options to improve patient care.
With the aim to achieve complete regeneration of soft tissue defects, adipose tissue engineering holds great promise to provide functional, biologically active adipose tissue equivalents. Here, especially long-term maintenance of volume and shape, as well as sufficient vascularization of engineered adipose tissue represent critical and unresolved challenges [7-9]. For adipose tissue engineering approaches to be successful, it is thus essential to generate constructs that retain their initial volume in vivo, as well as to ensure their rapid vascularization to support cell survival and differentiation for full tissue regeneration [9,10]. Therefore, it was the ultimate goal of this thesis to develop volume-stable 3D adipose tissue constructs and to identify applicable strategies for sufficient vascularization of engineered constructs. The feasibility of the investigated approaches was verified by translation from in vitro to in vivo as a critical step for the advancement of potential regenerative therapies.
For the development of volume-stable constructs, the combination of two biomaterials with complementary properties was successfully implemented. In contrast to previous approaches in the field using mainly non-degradable solid structures for mechanical protection of developing adipose tissue [11-13], the combination of a cell-instructive hydrogel component with a biodegradable porous support structure of adequate texture was shown advantageous for the generation of volume-stable adipose tissue. Specifically, stable fibrin hydrogels previously developed in our group [14] served as cell carrier and supported the adipogenic development of adipose-derived stem cells (ASCs) as reflected by lipid accumulation and leptin secretion. Stable fibrin gels were thereby shown to be equally supportive of adipogenesis compared to commercial TissuCol hydrogels in vitro. Using ASCs as a safe source of autologous cells [15,16] added substantial practicability to the approach. To enhance the mechanical strength of the engineered constructs, porous biodegradable poly(ε caprolactone)-based polyurethane (PU) scaffolds were introduced as support structures and shown to exhibit adequately sized pores to host adipocytes as well as interconnectivity to allow coherent tissue formation and vascularization. Low wettability and impaired cell attachment indicated that PU scaffolds alone were insufficient in retaining cells within the pores, yet cytocompatibility and differentiation of ASCs were adequately demonstrated, rendering the PU scaffolds suitable as support structures for the generation of stable fibrin/PU composite constructs (Chapter 3).
Volume-stable adipose tissue constructs were generated by seeding the pre-established stable fibrin/PU composites with ASCs. Investigation of size and weight in vitro revealed that composite constructs featured enhanced stability relative to stable fibrin gels alone. Comparing stable fibrin gels and TissuCol as hydrogel components, it was found that TissuCol gels were less resilient to degradation and contraction. Composite constructs were fully characterized, showing good cell viability of ASCs and strong adipogenic development as indicated by functional analysis via histological Oil Red O staining of lipid vacuoles, qRT-PCR analysis of prominent adipogenic markers (PPARγ, C/EBPα, GLUT4, aP2) and quantification of leptin secretion. In a pilot study in vivo, investigating the suitability of the constructs for transplantation, stable fibrin/PU composites provided with a vascular pedicle gave rise to areas of well-vascularized adipose tissue, contrasted by insufficient capillary formation and adipogenesis in constructs implanted without pedicle. The biomaterial combination of stable fibrin gels and porous biodegradable PU scaffolds was thereby shown highly suitable for the generation of volume-stable adipose tissue constructs in vivo, and in addition, the effectiveness of immediate vascularization upon implantation to support adipose tissue formation was demonstrated (Chapter 4).
Further pursuing the objective to investigate adequate vascularization strategies for engineered adipose tissue, hypoxic preconditioning was conducted as a possible approach for in vitro prevascularization. In 2D culture experiments, analysis on the cellular level illustrated that the adipogenic potential of ASCs was reduced under hypoxic conditions when applied in the differentiation phase, irrespective of the oxygen tension encountered by the cells during expansion. Hypoxic treatment of ASCs in 3D constructs prepared from stable fibrin gels similarly resulted in reduced adipogenesis, whereas endothelial CD31 expression as well as enhanced leptin and vascular endothelial growth factor (VEGF) secretion indicated that hypoxic treatment indeed resulted in a pro-angiogenic response of ASCs. Especially the observed profound regulation of leptin production by hypoxia and the dual role of leptin as adipokine and angiogenic modulator were considered an interesting connection advocating further study. Having confirmed the hypothesis that hypoxia may generate a pro-angiogenic milieu inside ASC-seeded constructs, faster vessel ingrowth and improved vascularization as well as an enhanced tolerance of hypoxia-treated ASCs towards ischemic conditions upon implanatation may be expected, but remain to be verified in rodent models in vivo (Chapter 5).
Having previously been utilized for bone and cartilage engineering [17-19], as well as for revascularization and wound healing applications [20-22], stromal-vascular fraction (SVF) cells were investigated as a novel cell source for adipose tissue engineering. Providing cells with adipogenic differentiation as well as vascularization potential, the SVF was applied with the specific aim to promote adipogenesis and vascularization in engineered constructs in vivo. With only basic in vitro investigations by Lin et al. addressing the SVF for adipose repair to date [23], the present work thoroughly investigated SVF cells for adipose tissue construct generation in vitro, and in particular, pioneered the application of these cells for adipose tissue engineering in vivo.
Initial in vitro experiments compared SVF- and ASC-seeded stable fibrin constructs in different medium compositions employing preadipocyte (PGM-2) and endothelial cell culture medium (EGM-2). It was found that a 1:1 mixture of PGM-2 and EGM-2, as previously established for co-culture models of adipogenesis [24], efficiently maintained cells with adipogenic and endothelial potential in SVF-seeded constructs in short and long-term culture setups. Observations on the cellular level were supported by analysis of mRNA expression of characteristic adipogenic and endothelial markers. In preparation of the evaluation of SVF-seeded constructs under in vivo conditions, a whole mount staining (WMS) method, facilitating the 3D visualization of adipocytes and blood vessels, was successfully established and optimized using native adipose tissue as template (Chapter 6).
In a subcutaneous nude mouse model, SVF cells were, for the first time in vivo, elucidated for their potential to support the functional assembly of vascularized adipose tissue. Investigating the effect of adipogenic precultivation of SVF-seeded stable fibrin constructs in vitro prior to implantation on the in vivo outcome, hormonal induction was shown beneficial in terms of adipocyte development, whereas a strong vascularization potential was observed when no adipogenic inducers were added. Via histological analysis, it was proven that the developed structures were of human origin and derived from the implanted cells. Applying SVF cells without precultivation in vitro but comparing two different fibrin carriers, namely stable fibrin and TissuCol gels, revealed that TissuCol profoundly supported adipose formation by SVF cells in vivo. This was contrasted by only minor SVF cell development and a strong reduction of cell numbers in stable fibrin gels implanted without precultivation. Histomorphometric analysis of adipocytes and capillary structures was conducted to verify the qualitative results, concluding that particularly SVF cells in TissuCol were highly suited for adipose regeneration in vivo. Employing the established WMS technique, the close interaction of mature adipocytes and blood vessels in TissuCol constructs was impressively shown and via species-specific human vimentin staining, the expected strong involvement of implanted SVF cells in the formation of coherent adipose tissue was confirmed (Chapter 7).
With the development of biodegradable volume-stable adipose tissue constructs, the application of ASCs and SVF cells as two promising cell sources for functional adipose regeneration, as well as the thorough evaluation of strategies for construct vascularization in vitro and in vivo, this thesis provides valuable solutions to current challenges in adipose tissue engineering. The presented findings further open up new perspectives for innovative treatments to cure soft tissue defects and serve as a basis for directed approaches towards the generation of clinically applicable soft tissue substitutes.
The first part of this thesis deals with the approximability of the traveling salesman problem. This problem is defined on a complete graph with edge weights, and the task is to find a Hamiltonian cycle of minimum weight that visits each vertex exactly once. We study the most important multiobjective variants of this problem. In the multiobjective case, the edge weights are vectors of natural numbers with one component for each objective, and since weight vectors are typically incomparable, the optimal Hamiltonian cycle does not exist. Instead we consider the Pareto set, which consists of those Hamiltonian cycles that are not dominated by some other, strictly better Hamiltonian cycles. The central goal in multiobjective optimization and in the first part of this thesis in particular is the approximation of such Pareto sets.
We first develop improved approximation algorithms for the two-objective metric traveling salesman problem on multigraphs and for related Hamiltonian path problems that are inspired by the single-objective Christofides' heuristic. We further show arguments indicating that our algorithms are difficult to improve. Furthermore we consider multiobjective maximization versions of the traveling salesman problem, where the task is to find Hamiltonian cycles with high weight in each objective. We generalize single-objective techniques to the multiobjective case, where we first compute a cycle cover with high weight and then remove an edge with low weight in each cycle. Since weight vectors are often incomparable, the choice of the edges of low weight is non-trivial. We develop a general lemma that solves this problem and enables us to generalize the single-objective maximization algorithms to the multiobjective case. We obtain improved, randomized approximation algorithms for the multiobjective maximization variants of the traveling salesman problem. We conclude the first part by developing deterministic algorithms for these problems.
The second part of this thesis deals with redundancy properties of complete sets. We call a set autoreducible if for every input instance x we can efficiently compute some y that is different from x but that has the same membership to the set. If the set can be split into two equivalent parts, then it is called weakly mitotic, and if the splitting is obtained by an efficiently decidable separator set, then it is called mitotic. For different reducibility notions and complexity classes, we analyze how redundant its complete sets are.
Previous research in this field concentrates on polynomial-time computable reducibility notions. The main contribution of this part of the thesis is a systematic study of the redundancy properties of complete sets for typical complexity classes and reducibility notions that are computable in logarithmic space. We use different techniques to show autoreducibility and mitoticity that depend on the size of the complexity class and the strength of the reducibility notion considered. For small complexity classes such as NL and P we use self-reducible, complete sets to show that all complete sets are autoreducible. For large complexity classes such as PSPACE and EXP we apply diagonalization methods to show that all complete sets are even mitotic. For intermediate complexity classes such as NP and the remaining levels of the polynomial-time hierarchy we establish autoreducibility of complete sets by locally checking computational transcripts. In many cases we can show autoreducibility of complete sets, while mitoticity is not known to hold. We conclude the second part by showing that in some cases, autoreducibility of complete sets at least implies weak mitoticity.
Abstract
Tobacco addiction is considered as a chronic relapsing disorder, characterized by compul-sive drug seeking and intake. Learning processes are stressed to account for the situational-specific expression of core features of the disorder, e.g., craving for drug, tolerance and ex-cessive consumption. According to incentive theories, smoke conditioned stimuli are hy-pothesized to be appetitive in nature, promoting craving, approach and consummatory be-havior. Commonly, smoking cues are treated as simple excitatory conditioned stimuli formed by a close and reliable overlap with the drug effect. However, the smoking ritual comprises a multitude of stimuli which may give rise to different forms of learning and con-ditioned responses partially opposing each other. Previous research suggests the predictive content and the temporal proximity of smoking stimuli to the drug effect as important de-terminants of cue reactivity. In contrast to stimuli related to the preparatory stage of smok-ing and the start of consumption (BEGIN stimuli), stimuli from the terminal stage of smok-ing (END stimuli) apparently lack high cue reactivity. Several lines of evidence suggest the poor cue properties of terminal stimuli to be related to their signaling of poor smoke availa-bility. Indeed, cue reactivity is commonly decreased when smoking appears to be unavaila-ble. Moreover, the learning literature suggests that stimuli predictive for the non-availability of reward may acquire the capacity to modulate or oppose the responses of ex-citatory conditioned stimuli. Therefore, the aim of the present thesis was to enhance our knowledge of stimulus control in human drug addiction and incentive motivation by running a series of conditioning studies with smoke intake and monetary reward as reinforcer. Sub-jective report and physiological measures of motivational valence and consummatory re-sponse tendencies were used as dependent variables.
The first experiment of this thesis used a differential conditioning paradigm to reveal evi-dence for the conditioning of preparatory and consummatory responses to a CS+ for smok-ing. Neutral pictograms served as CSs and single puffs on a cigarette as US. In line with the predictions of incentive theories, the excitatory CS+ for smoking acquired the ability to evoke an appetitive conditioned response, as indicated by enhanced activity of the M. zy-gomaticus major. Moreover, anticipation of puffing on the cigarette increased the activity of the M. orbicularis oris (lip muscle), indicating the activation of consummatory response tendencies. Finally, the CS+ evoked stronger skin conductance responses, indicative of in-creased autonomic arousal and orienting in preparation for action. In contrast, the rating data were apparently unaffected by the experimental contingency. In sum, the physiological data provide support for the notion that excitatory smoke conditioning gives rise to appeti-tive and consummatory conditioned responses, which may at least partially contribute to the maintenance of tobacco addiction.
The second experiment of this thesis adapted the conditioning protocol of the first study to probe the functional significance of terminal stimuli in the control of addictive behavior. This study manipulated the predictive relationship of BEGIN and END stimuli to smoke rein-forcement to provide further support for the differential reactivity to both stimuli and the retarded (i.e., delayed) conditioning of END stimuli. Overall, the results of the first study of this thesis were conceptually replicated as the association of a BEGIN stimulus with smoke intake resulted in the acquisition of appetitive and consummatory physiological responses. Importantly, the results revealed evidence for a retarded excitatory conditioning of END stimuli. Thus, pairing of an END stimulus with smoke intake failed to produce a conditioned discrimination in terms of motivational valence and autonomic arousal, as indicated by the activity of the M. corrugator supercilii and the skin conductance data. These results provide further support for the notion that END stimuli may be weak cues for smoking. Moreover, in light of the results of the first study of this thesis, the retarded excitatory conditioning of terminal stimuli may be suggestive of an inhibitory response component, which may be re-lated to their signaling of poor smoke availability. In sum, these results add to a growing body of data, which suggest that the expression of cue reactivity may be modulated by the temporal proximity and the availability of the drug effect.
The aim of the third study of this thesis was to provide “proof of concept” for an inhibi-tory conditioning notion of terminal stimuli. In this analog study BEGIN and END stimuli were emulated as discriminative SD and S for monetary reward. During an acquisition phase conditioned inhibition was established to the S predictive of the non-availability of re-ward. Subsequently a retardation test was used to substantiate conditioned inhibition. In this test, excitatory conditioning of the previous S was compared to the excitatory condi-tioning of a novel control stimulus. Importantly, the results revealed evidence for reward conditioned inhibition as indicated by the retarded acquisition of subjective (pleasure and reward expectancy) and physiological (skin conductance and activity of the M. orbicularis oculi) responses. In sum, these results provide support for the notion that stimuli predictive for the non-availability of reward may acquire the capacity to oppose the responses of ex-citatory conditioned stimuli. Thus, future research may benefit from the consideration of inhibitory conditioning processes in drug addiction, which may be of theoretical, methodo-logical and clinical importance.
In sum, the present thesis revealed evidence for 1) an appetitive nature of excitatory condi-tioned smoking cues, 2) the dependency of this learning process on the temporal position of the conditioned stimuli in the intake ritual and 3) the acquisition of conditioned inhibition by a stimulus predictive for the non-availability of reward, as evident in retarded excitatory conditioning. Overall, these studies made a novel contribution to the field of human drug addiction and incentive motivation and provided valuable suggestions for further research.
Influenza gehört zu den häufigsten respiratorischen Erkrankungen im Kindesalter. Auf Grund der raschen weltweiten Verbreitung des im Frühjahr 2009 neu aufgetretenen pandemischen Influenza A (H1N1) 2009- Virus rief die Weltgesundheitsorganisation (WHO) am 11. Juni 2009 die höchste Pandemiestufe aus. Ziel der vorliegenden Studie war es, alle hospitalisierten Kinder < 18 Jahren im Raum Würzburg mit laborchemischem Nachweis von pandemischer Influenza A (H1N1) 2009 (PIA) zu erfassen und den klinischen Verlauf sowie die aufgetretenen Komplikationen zu beschreiben. Weiterhin wurde die PIA-assoziierte Hospitalisations-Inzidenz für das Haupteinzugsgebiet der Kliniken für verschiedene Altersgruppen berechnet und mit Hospitalisations-Inzidenzen für saisonale Influenza der Saisons 2006/2007 bis 2008/2009 verglichen.
Im Zeitraum von Juli 2009 bis März 2010 waren 94 Kinder < 18 Jahren (62% männlich) mit einer PIA-Infektion in stationärer Behandlung. Das Alter der Patienten lag im Median bei 7,1 Jahren (IQR: 3-12 Jahre). Eine Vorerkrankung bestand bei 40 Kindern (43%), wobei hier Adipositas (n=12, 30% der 40 Patienten mit Grunderkrankung), Asthma bronchiale (n=10, 25%) und neurologische Erkrankungen (n=8, 20%) am häufigsten waren. Die häufigsten Symptome bei stationärer Aufnahme waren Husten (n=75, 80% der 94 Patienten), Fieber (n=73, 78%) und Rhinitis (n=48, 51%). Eine Komplikation der PIA trat bei 37 Kindern (39%) auf, am häufigsten war eine Infektion der unteren Luftwege. Sechzehn Kinder (17%) benötigten eine Sauerstoffsupplementierung und drei Kinder (3%) wurden maschinell beatmet. Sechs Kinder (6%) wurden intensivstationär behandelt. Lediglich 3 Kinder (3%) waren gegen PIA und eines (1%) gegen saisonale Influenza geimpft. Die geschätzte Hospitalisations-Inzidenz im Würzburger Raum lag bei 118/100.000 für Kinder unter 18 Jahren und war am höchsten für Kinder unter einem Jahr (242/100.000). Die Hospitalisations-Inzidenz für saisonale Influenza A für Kinder unter 18 Jahren war in den drei vorhergehenden Saisons 2006/2007, 2007/2008 und 2008/2009 mit 41-97/100.000 niedriger als für PIA. Neben den 94 ambulant erworbenen Infektionen traten sieben nosokomiale Infektionen auf. Hierunter war ein Todesfall bei einem 16-jährigen Mädchen mit schweren Grunderkrankungen zu verzeichnen.
Trotz der hohen Hospitalisierungs-Inzidenz verlief der überwiegende Anteil an PIA-assoziierten Hospitalisierungen ohne schwere Komplikationen. Kinder mit einer Grunderkrankung waren häufiger von einer Komplikation der PIA betroffen und nur ein geringer Anteil dieser Patienten war gegen Influenza geimpft, obwohl eine explizite Impfempfehlung der Ständigen Impfkommission am Robert Koch-Institut für diese Patientengruppe besteht. Höhere Durchimpfungsraten sind notwendig, um die Krankheitslast und das Auftreten von Komplikationen zu reduzieren. Derzeit wird daher die Einführung einer generellen Empfehlung der Impfung gegen Influenza für Kinder diskutiert.
Der Meniskus, ein scheibenförmiger Faserknorpel, spielt im Kniegelenk eine bedeutende Rolle, weil er Kräfte und Druck im Kniegelenk gleichmäßig verteilt, Stöße dämpft sowie der Kraftübertragung und Stabilisierung dient. Durch die Entfernung des Gewebes, der sogenannten Totalmeniskektomie, nach einer Meniskusverletzung oder einem Riss, verändern sich die mechanischen Eigenschaften des Gelenks stark und verursachen durch die erhöhte Belastung der Gelenkflächen Arthrose. Arthrose ist weltweit die Häufigste aller Gelenkerkrankungen. Der Erhalt der körperlichen Leistungsfähigkeit und Mobilität bis ins hohe Alter sowie die Bewahrung der Gesundheit von Herz-Kreislauf- und Stoffwechselorganen zählen aufgrund des demografischen Wandels zu den großen medizinischen Herausforderungen. Die Erkrankung des muskuloskelettalen Systems stellte 2010 im Bundesgebiet die am häufigsten vorkommende Krankheitsart dar.
Während Risse in den äußeren Teilen des Meniskus aufgrund des Anschlusses an das Blutgefäßsystem spontan heilen können, können sie dies in tieferen Zonen nicht. Durch die begrenzte Heilungsfähigkeit des Knorpels bleibt langfristig der Einsatz eines Ersatzgewebes die einzige therapeutische Alternative.
In der vorliegenden Arbeit wurde als therapeutische Alternative erfolgreich ein vaskularisiertes Meniskusersatzgewebe mit Methoden des Tissue Engineering entwickelt. Es soll in Zukunft als Implantat Verwendung finden. Tissue Engineering ist ein interdisziplinäres Forschungsfeld, in dem Gewebe außerhalb des Körpers generiert werden. Schlüsselkomponenten sind Zellen, die aus einem Organismus isoliert werden, und Trägerstrukturen, die mit Zellen besiedelt werden. Die Biomaterialien geben den Zellen eine geeignete Umgebung, die die Extrazelluläre Matrix (EZM) ersetzen soll, um die Funktion der Zellen beizubehalten, eigene Matrix zu bilden. Zum Erhalt eines funktionelles Gewebes werden oftmals dynamische Kultursysteme, sogenannte Bioreaktoren, verwendet, die natürliche Stimuli wie beispielsweise den Blutfluss oder mechanische Kompressionskräfte während der in vitro Reifungsphase des Gewebes, zur Verfügung stellen. Das Gewebekonstrukt wurde auf Basis natürlicher Biomaterialien aufgebaut, unter Verwendung ausschließlich primärer Zellen, die später direkt vom Patienten gewonnen werden können und damit Abstoßungsreaktionen auszuschließen sind. Da der Meniskus teilvaskularisiert ist und die in vivo Situation des Gewebes bestmöglich nachgebaut werden sollte, wurden Konstrukte mit mehreren Zelltypen, sogenannte Ko-Kulturen aufgebaut. Neben mikrovaskulären Endothelzellen (mvEZ) und Meniskuszellen (MZ) erfolgten Versuche mit mesenchymalen Stammzellen (MSZ).
Zur Bereitstellung einer zelltypspezifischen Matrixumgebung, diente den mvEZ ein Stück Schweinedarm mit azellularisierten Gefäßstrukturen (BioVaSc®) und den MZ diente eine geeig- nete Kollagenmatrix (Kollagen Typ I Hydrogel). Die Validierung und Charakterisierung des aufgebauten 3D Meniskuskonstrukts, welches in einem dynamischen Perfusions-Bioreaktorsystem kultiviert wurde, erfolgte mit knorpeltypischen Matrixmarkern wie Aggrekan, Kollagen Typ I, II und X sowie mit den Transkriptionsfaktoren RunX2 und Sox9, die in der Knorpelentstehung von großer Bedeutung sind. Zusätzlich erfolgten Auswertungen mit endothelzellspezifischen Markern wie vWF, CD31 und VEGF, um die Vaskularisierung im Konstrukt nachzuweisen. Analysiert wurden auch die Zellvitalitäten in den Konstrukten.
Aufgrund einer nur geringen Verfügbarkeit von MZ wurden Kulturansätze mit alternativen Zellquellen, den MSZ, durchgeführt. Dafür erfolgte zunächst deren Isolation und Charakterisierung und die Auswahl einer geeigneten 3D Kollagenmatrix. Die beste Zellintegration der MSZ konnte auf einer eigens hergestellten elektrogesponnenen Matrix beobachtet werden. Die Matrix besteht aus zwei unterschiedlichen Kollagentypen, die auf insgesamt fünf Schichten verteilt sind. Die Fasern besitzen weiter unterschiedliche Ausrichtungen. Während die Kollagen Typ I Fasern in den äußeren Schichten keiner Ausrichtung zugehören, liegen die Kollagen Typ II Fasern in der mittleren Schicht parallel zueinander. Der native Meniskus war für den Aufbau einer solchen Kollagen-Trägerstruktur das natürliche Vorbild, das imitiert werden sollte. Nach der Besiedelung der Matrix mit MSZ, konnte eine Integration der Zellen bereits nach vier Tagen bis in die Mittelschicht sowie eine spontane chondrogene Differenzierung nach einer insgesamt dreiwöchigen Kultivierung gezeigt werden. Das Biomaterial stellt in Hinblick auf die Differenzierung der Zellen ohne die Zugabe von Wachstumsfaktoren eine relevante Bedeutung für klinische Studien dar.
Zur Kultivierung des 3D Meniskuskonstrukts wurde ein Bioreaktor entwickelt. Mit diesem können neben Perfusion der Gefäßsysteme zusätzlich Kompressionskräfte sowie Scherspannungen auf das Ersatzgewebe appliziert und die Differenzierung von MZ bzw. MSZ während der in vitro Kultur über mechanische Reize stimuliert werden. Ein anderes Anwendungsfeld für den neuartigen Bioreaktor ist seine Verwendung als Prüftestsystem für die Optimierung und Qualitätssicherung von Gewebekonstrukten.
The infection of a eukaryotic host cell by a bacterial pathogen is one of the most intimate examples of cross-kingdom interactions in biology. Infection processes are highly relevant from both a basic research as well as a clinical point of view. Sophisticated mechanisms have evolved in the pathogen to manipulate the host response and vice versa host cells have developed a wide range of anti-microbial defense strategies to combat bacterial invasion and clear infections. However, it is this diversity and complexity that makes infection research so challenging to technically address as common approaches have either been optimized for bacterial or eukaryotic organisms. Instead, methods are required that are able to deal with the often dramatic discrepancy between host and pathogen with respect to various cellular properties and processes. One class of cellular macromolecules that exemplify this host-pathogen heterogeneity is given by their transcriptomes: Bacterial transcripts differ from their eukaryotic counterparts in many aspects that involve both quantitative and qualitative traits. The entity of RNA transcripts present in a cell is of paramount interest as it reflects the cell’s physiological state under the given condition. Genome-wide transcriptomic techniques such as RNA-seq have therefore been used for single-organism analyses for several years, but their applicability has been limited for infection studies.
The present work describes the establishment of a novel transcriptomic approach for infection biology which we have termed “Dual RNA-seq”. Using this technology, it was intended to shed light particularly on the contribution of non-protein-encoding transcripts to virulence, as these classes have mostly evaded previous infection studies due to the lack of suitable methods. The performance of Dual RNA-seq was evaluated in an in vitro infection model based on the important facultative intracellular pathogen Salmonella enterica serovar Typhimurium and different human cell lines. Dual RNA-seq was found to be capable of capturing all major bacterial and human transcript classes and proved reproducible. During the course of these experiments, a previously largely uncharacterized bacterial small non-coding RNA (sRNA), referred to as STnc440, was identified as one of the most strongly induced genes in intracellular Salmonella. Interestingly, while inhibition of STnc440 expression has been previously shown to cause a virulence defect in different animal models of Salmonellosis, the underlying molecular mechanisms have remained obscure. Here, classical genetics, transcriptomics and biochemical assays proposed a complex model of Salmonella gene expression control that is orchestrated by this sRNA. In particular, STnc440 was found to be involved in the regulation of multiple bacterial target mRNAs by direct base pair interaction with consequences for Salmonella virulence and implications for the host’s immune response. These findings exemplify the scope of Dual RNA-seq for the identification and characterization of novel bacterial virulence factors during host infection.
Each year millions of plastic and reconstructive procedures are performed to regenerate soft tissue defects after, for example, traumata, deep burns or tumor resections. Tissue engineered adipose tissue grafts are a promising alternative to autologous fat transfer or synthetic implants to meet this demand for adipose tissue. Strategies of tissue engineering, especially the use of cell carriers, provide an environment for better cell survival, an easier positioning and supplemented with the appropriate conditions a faster vascularization in vivo. To successfully engineer an adipose tissue substitute for clinical use, it is crucial to know the actual intended application. In some areas, like the upper and lower extremities, only a thin subcutaneous fat layer is needed and in others, large volumes of vascularized fat grafts are more desirable. The use and interplay of stem cells and selected scaffolds were investigated and provide now a basis for the generation of fitted and suitable substitutes in two different application areas.
Complex injuries of the upper and lower extremities, in many cases, lead to excessive scarring. Due to severe damage to the subcutaneous fat layer, a common sequela is adhesion formation to mobile structures like tendons, nerves, and blood vessels resulting in restricted motion and disabling pain [Moor 1996, McHugh 1997]. In order to generate a subcutaneous fat layer to cushion scarred tissue after substantial burns or injuries, different collagen matrices were tested for clinical handling and the ability to support adipogenesis. When testing five different collagen matrices, PermacolTM and StratticeTM showed promising characteristics; additionally both possess the clinical approval. Under culture conditions, only PermacolTM, a cross-linked collagen matrix, exhibited an excellent long-term stability. Ranking nearly on the same level was StratticeTM, a non-cross-linked dermal scaffold; it only exhibited a slight shrinkage. All other scaffolds tested were severely compromised in stability under culture conditions. Engineering a subcutaneous fat layer, a construct would be desirable with a thin layer of emerging fat for cushioning on one side, and a non-seeded other side for cell migration and host integration. With PermacolTM and StratticeTM, it was possible to produce constructs with ASC (adipose derived stem cells) seeded on one side, which could be adipogenically differentiated. Additionally, the thickness of the cell layer could be varied. Thereby, it becomes possible to adjust the thickness of the construct to the surrounding tissue. In order to reduce the pre-implantation time ex vivo and the costs, the culture time was varied by testing different induction protocols. An adipogenic induction period of only four days was demonstrated to be sufficient to obtain a substantial adipogenic differentiation of the applied ASC. Thus, seeded with ASC, PermacolTM and StratticeTM are suitable scaffolds to engineer subcutaneous fat layers for reconstruction of the upper and lower extremities, as they support adipogenesis and are appropriately thin, and therefore would not compromise the cosmesis.
For the engineering of large-volume adipose tissue, adequate vascularization still represents a major challenge. With the objective to engineer vascularized fat pads, it is important to consider the slow kinetics of revascularization in vivo. Therefore, a decellularized porcine jejunum with pre-existing vascular structures and pedicles to connect to the host vasculature or the circulation of a bioreactor system was used. In a first step, the ability of a small decellularized jejunal section was tested for cell adhesion and for supporting adipogenic differentiation of hASC mono-cultures. Cell adhesion and adipogenic maturation of ASC seeded on the jejunal material was verified through histological and molecular analysis. After the successful mono-culture, the goal was to establish a MVEC (microvascular endothelial cells) and ASC co-culture; suitable culture conditions had to be found, which support the viability of both cell types and do not interfere with the adipogenic differentiation. After the elimination of EGF (epidermal growth factor) from the co-culture medium, substantial adipogenic maturation was observed. In the next step, a large jejunal segment (length 8 cm), with its pre-existing vascular structures and arterial/venous pedicles, was connected to the supply system of a custom-made bioreactor. After successful reseeding the vascular structure with endothelial cells, the lumen was seeded with ASC which were then adipogenically induced. Histological and molecular examinations confirmed adipogenic maturation and the existence of seeded vessels within the engineered construct. Noteworthily, a co-localization of adipogenically differentiating ASC and endothelial cells in vascular networks could be observed. So, for the first time a vascularized fat construct was developed in vitro, based on the use of a decellularized porcine jejunum. As this engineered construct can be connected to a supply system or even to a patient vasculature, it is versatile in use, for example, as transplant in plastic and reconstruction surgery, as model in basic research or as an in vitro drug testing system.
To summarize, in this work a promising substitute for subcutaneous fat layer reconstruction, in the upper and lower extremities, was developed, and the first, as far as reported, in vitro generated adipose tissue construct with integrated vascular networks was successfully engineered.
Numerical Simulations of Heavy Fermion Systems: From He-3 Bilayers to Topological Kondo Insulators
(2014)
Even though heavy fermion systems have been studied for a long time, a strong interest in heavy fermions persists to this day. While the basic principles of local moment formation, Kondo effect and formation of composite quasiparticles leading to a Fermi liquid, are under- stood, there remain many interesting open questions. A number of issues arise due to the interplay of heavy fermion physics with other phenomena like magnetism and superconduc- tivity.
In this regard, experimental and theoretical investigations of He-3 can provide valuable insights. He-3 represents a unique realization of a quantum liquid. The fermionic nature of He-3 atoms, in conjunction with the absence of long-range Coulomb repulsion, makes this material an ideal model system to study Fermi liquid behavior.
Bulk He-3 has been investigated for quite some time. More recently, it became possible to prepare and study layered He-3 systems, in particular single layers and bilayers. The pos- sibility of tuning various physical properties of the system by changing the density of He-3 and using different substrate materials makes layers of He-3 an ideal quantum simulator for investigating two-dimensional Fermi liquid phenomenology.
In particular, bilayers of He-3 have recently been found to exhibit heavy fermion behavior. As a function of temperature, a crossover from an incoherent state with decoupled layers to a coherent Fermi liquid of composite quasiparticles was observed. This behavior has its roots in the hybridization of the two layers. The first is almost completely filled and subject to strong correlation effects, while the second layer is only partially filled and weakly correlated. The quasiparticles are formed due to the Kondo screening of localized moments in the first layer by the second-layer delocalized fermions, which takes place at a characteristic temperature scale, the coherence scale Tcoh.
Tcoh can be tuned by changing the He-3 density. In particular, at a certain critical filling,
the coherence scale is expected to vanish, corresponding to a divergence of the quasiparticle effective mass, and a breakdown of the Kondo effect at a quantum critical point. Beyond the critical point, the layers are decoupled. The first layer is a local moment magnet, while the second layer is an itinerant overlayer.
However, already at a filling smaller than the critical value, preempting the critical point, the onset of a finite sample magnetization was observed. The character of this intervening phase remained unclear.
Motivated by these experimental observations, in this thesis the results of model calcula- tions based on an extended Periodic Anderson Model are presented. The three particle ring exchange, which is the dominant magnetic exchange process in layered He-3, is included in the model. It leads to an effective ferromagnetic interaction between spins on neighboring sites. In addition, the model incorporates the constraint of no double occupancy by taking the limit of large local Coulomb repulsion.
By means of Cellular DMFT, the model is investigated for a range of values of the chemical potential µ and inverse temperature β = 1/T . The method is a cluster extension to the Dy- namical Mean-Field Theory (DMFT), and allows to systematically include non-local correla- tions beyond the DMFT. The auxiliary cluster model is solved by a hybridization expansion CTQMC cluster solver, which provides unbiased, numerically exact results for the Green’s function and other observables of interest.
As a first step, the onset of Fermi liquid coherence is studied. At low enough temperature, the self-energy is found to exhibit a linear dependence on Matsubara frequency. Meanwhile, the spin susceptibility crossed over from a Curie-Weiss law to a Pauli law. Both observations serve as fingerprints of the Fermi liquid state.
The heavy fermion state appears at a characteristic coherence scale Tcoh. This scale depends strongly on the density. While it is rather high for small filling, for larger filling Tcoh is increas- ingly suppressed. This involves a decreasing quasiparticle residue Z ∼ Tcoh and an enhanced mass renormalization m∗/m ∼ Tcoh−1. Extrapolation leads to a critical filling, where the co-
herence scale is expected to vanish at a quantum critical point. At the same time, the effective mass diverges. This corresponds to a breakdown of the Kondo effect, which is responsible for the formation of quasiparticles, due to a vanishing of the effective hybridization between the layers.
Taking only single-site DMFT results into account, the above scenario seems plausible. However, paramagnetic DMFT neglects the ring exchange interaction completely. In or- der to improve on this, Cellular DMFT simulations are conducted for small clusters of size Nc = 2 and 3. The results paint a different physical picture. The ring exchange, by favor- ing a ferromagnetic alignment of spins, competes with the Kondo screening. As a result, strong short-range ferromagnetic fluctuations appear at larger values of µ. By lowering the temperature, these fluctuations are enhanced at first. However, for T < Tcoh they are increas- ingly suppressed, which is consistent with Fermi liquid coherence. However, beyond a certain threshold value of µ, fluctuations persist to the lowest temperatures. At the same time, while not apparent in the DMFT results, the total occupation n increases quite strongly in a very narrow range around the same value of µ. The evolution of n with µ is always continuous, but hints at a discontinuity in the limit Nc → ∞. This first-order transition breaks the Kondo effect. Beyond the transition, a ferromagnetic state in the first layer is established, and the second layer becomes a decoupled overlayer.
These observations provide a quite appealing interpretation of the experimental results. As a function of chemical potential, the Kondo breakdown quantum critical point is preempted by a first-order transition, where the layers decouple and the first layer turns into a ferromagnet. In the experimental situation, where the filling can be tuned directly, the discontinuous transition is mirrored by a phase separation, which interpolates between the Fermi liquid ground state at lower filling and the magnetic state at higher filling. This is precisely the range of the intervening phase found in the experiments, which is characterized by an onset of a finite sample magnetization.
Besides the interplay of heavy fermion physics and magnetic exchange, recently the spin- orbit coupling, which is present in many heavy fermion materials, attracted a lot of interest. In the presence of time-reversal symmetry, due to spin-orbit coupling, there is the possibility of a topological ground state.
It was recently conjectured that the energy scale of spin-orbit coupling can become dom- inant in heavy fermion materials, since the coherence scale and quasiparticle bandwidth are rather small. This can lead to a heavy fermion ground state with a nontrivial band topology; that is, a topological Kondo insulator (TKI). While being subject to strong correlation effects, this state must be adiabatically connected to a non-interacting, topological state.
The idea of the topological ground state realized in prototypical Kondo insulators, in par- ticular SmB6, promises to shed light on some of the peculiarities of these materials, like a residual conductivity at the lowest temperatures, which have remained unresolved so far.
In this work, a simple two-band model for two-dimensional topological Kondo insulators is devised, which is based on a single Kramer’s doublet coupled to a single conduction band. The model is investigated in the presence of a Hubbard interaction as a function of interaction strength U and inverse temperature β. The bulk properties of the model are obtained by DMFT, with a hybridization expansion CTQMC impurity solver. The DMFT approximation of a local self-energy leads to a very simple way of computing the topological invariant.
The results show that with increasing U the system can be driven through a topological phase transition. Interestingly, the transition is between distinct topological insulating states, namely the Γ-phase and M-phase. This appearance of different topological phases is possible due to the symmetry of the underlying square lattice. By adiabatically connecting both in- teracting states with the respective non-interacting state, it is shown that the transition indeed drives the system from the Γ-phase to the M-phase.
A different behavior can be observed by pushing the bare position of the Kramer’s doublet to higher binding energies. In this case, the non-interacting starting point has a trivial band topology. By switching on the interaction, the system can be tuned through a quantum phase transition, with a closing of the band gap. Upon reopening of the band gap, the system is in the Γ-phase, i. e. a topological insulator. By increasing the interaction strength further, the system moves into a strongly correlated regime. In fact, close to the expected transition to the M phase, the mass renormalization becomes quite substantial. While absent in the para- magnetic DMFT simulations conducted, it is conceivable that instead of a topological phase transition, the system undergoes a time-reversal symmetry breaking, magnetic transition.
The regime of strong correlations is studied in more detail as a function of temperature, both in the bulk and with open boundary conditions. A quantity which proved very useful is the bulk topological invariant Ns, which can be generalized to finite interaction strength and temperature. In particular, it can be used to define a temperature scale T ∗ for the onset of the topological state. Rescaling the results for Ns, a nice data collapse of the results for different values of U, from the local moment regime to strongly mixed valence, is obtained. This hints at T ∗ being a universal low energy scale in topological Kondo insulators. Indeed, by comparing T ∗ with the coherence scale extracted from the self-energy mass renormalization, it is found that both scales are equivalent up to a constant prefactor. Hence, the scale T ∗ obtained from the temperature dependence of topological properties, can be used as an independent measure for Fermi liquid coherence. This is particularly useful in the experimentally relevant mixed valence regime, where charge fluctuations cannot be neglected. Here, a separation of the energy scales related to spin and charge fluctuations is not possible.
The importance of charge fluctuations becomes evident in the extent of spectral weight transfer as the temperature is lowered. For mixed valence, while the hybridization gap emerges, a substantial amount of spectral weight is shifted from the vicinity of the Fermi level to the lower Hubbard band. In contrast, this effect is strongly suppressed in the local moment regime.
In addition to the bulk properties, the spectral function for open boundaries is studied as a function of temperature, both in the local moment and mixed valence regime. This allows an investigation of the emergence of topological edge states with temperature. The method used here is the site-dependent DMFT, which is a generalization of the conventional DMFT to inhomogeneous systems. The hybridization expansion CTQMC algorithm is used as impurity solver.
By comparison with the bulk results for the topological quantity Ns, it is found that the
temperature scale for the appearance of the topological edge states is T ∗, both in the mixed valence and local moment regime.
The number of newly detected autoantibodies (AB) targeting synaptic proteins in neurological disorders of the central nervous system (CNS) is steadily increasing. Direct interactions of AB with their target antigens have been shown in first studies but the exact pathomecha-nisms for most of the already discovered AB are still unclear. The present study investigates pathophysiological mechanisms of AB-fractions that are associated with the enigmatic CNS disease Stiff person syndrome (SPS) and target the synaptically located proteins amphiphysin or glutamate decarboxylase 65 (GAD65).
In the first part of the project, effects of AB to the presynaptic endocytic protein amphiphysin were investigated. Ultrastructural investigations of spinal cord presynaptic boutons in an es-tablished in-vivo passive-transfer model after intrathecal application of human anti-amphiphysin AB showed a defect of endocytosis. This defect was apparent at high synaptic activity and was characterized by reduction of the synaptic vesicle pool, clathrin coated vesi-cles (CCVs), and endosome like structures (ELS) in comparison to controls. Molecular inves-tigation of presynaptic boutons in cultured murine hippocampal neurons with dSTORM microscopy after pretreatment with AB to amphiphysin revealed that marker proteins involved in vesicle exocytosis (synaptobrevin 2 and synaptobrevin 7) had an altered expression in GA-BAergic presynapses. Endophilin, a direct binding partner of amphiphysin also displayed a disturbed expression pattern. Together, these results point towards an anti-amphiphysin AB-induced defective organization in GABAergic synapses and a presumably compensatory rearrangement of proteins responsible for CME.
In the second part, functional consequences of SPS patient derived IgG fractions containing AB to GAD65, the rate limiting enzyme for GABA synthesis, were investigated by patch clamp electrophysiology and immunohistology. GABAergic neurotransmission at low and high activity as well as short term plasticity appeared normal but miniature synaptic potentials showed an enhanced frequency with constant amplitudes. SPS patient IgG after preabsorption of GAD65-AB using recombinant GAD65 still showed specific synaptic binding to neu-rons and brain slices supporting the hypothesis that additional, not yet characterized AB are present in patient IgG responsible for the exclusive effect on frequency of miniature potentials.
In conclusion, the present thesis uncovered basal pathophysiological mechanisms underlying paraneoplastic SPS induced by AB to amphiphysin leading to disturbed presynaptic architec-ture. In idiopathic SPS, the hypothesis of a direct pathophysiological role of AB to GAD65 was not supported and additional IgG AB are suspected to induce distinct synaptic malfunction.
Toll-like receptors (TLR) are pattern recognition receptors (PRR) by which macrophages (MØ) sense pathogen-associated molecular patterns (PAMPs). The recognition of lipopolysaccharide (LPS), the PAMP of gram negative bacteria, by TLR4 triggers signaling cascades and leads to the pro-inflammatory activation of the cells. A recent quantitative and kinetic analysis of the phosphoproteome of LPS-activated primary macrophages highlighted the cytoskeleton as a cell compartment with an enriched protein phosphorylation. In total 44 cytoskeleton-associated proteins were regulated by this post-translational modification and thus might be involved in the control and regulation of key macrophage functions like spreading, motility and phagocytosis.
To investigate the control of cytoskeleton-associated cell functions by TLR4 activation, we first developed a method to quantitatively measure the spreading response of bone marrow MØ after stimulation with LPS. Fluorescence microscopy was used for cell imaging and visualisation of the MØ contact area. In collaboration with the Fraunhofer Institute Erlangen, we developed and validated a software tool for the semi-automated segmentation and quantitation of MØ fluorescence microscopy data, which allowed fast, robust and objective image analysis. Using this method, we observed that LPS caused time-dependent spreading, which was detectable after 1-2 h and maximal after 24 h. Next, the impact of genetic or pharmacological inhibition of known TLR signaling components was investigated. Deficiency in the adapter protein MYD88 strongly reduced spreading activity at the late time points, but had no impact early after LPS-stimulation. A similar effect was observed upon pharmacological inhibition of ERK1/2 signaling, indicating that ERK1/2 mediates MYD88-dependent MØ spreading. In contrast, MØ lacking the MAPK p38 were impaired in the initial spreading response but responded normally 8-24 h after stimulation. The genetic deletion of the MAPK phosphatases DUSP1 and DUSP16 resulted in impaired late spreading, corroborating the essential role for functional MAPK signaling in TLR4-driven MØ spreading.
To identify the contribution of other cytoskeletal phosphoproteins to MØ spreading, siRNA knockdown of selected candidate genes in primary murine MØ was employed and combined with automated quantitative image analysis. These experiments revealed a functional role for the Myosins MYO1e and MYO1f in MØ spreading. These motor proteins are strongly phosphorylated in LPS-activated MØ. Because of their ability to simultaneously bind to actin filaments and cell membrane or other proteins, we investigated their role in phagocytosis, cytokine production and antigen presentation. Phagocytosis and killing of bacteria were not affected in Myo1e-/- macrophages. However, MYO1e plays a role in chemokine secretion and antigen presentation processes. MCP1 (CCL2) release was selectively increased in Myo1e-deficient MØ and dendritic cells (DC), while cytokine secretion was unaffected. Furthermore, macrophages and DCs lacking MYO1e showed lower levels of MHC-II on the cell surface. However, mRNA levels of CCL2 and of MHC-II were unaltered. These data suggest a role for MYO1e in the transport of selected chemokines and of MHC-II molecules to the cell surface. MHC-II-restricted antigen presentation assays revealed an impaired capacity of macrophages and DC lacking MYO1e to stimulate antigen-specific T cells, suggesting that the reduced MHC-II expression is functionally relevant.
Taken together, in this study first a quantitative image analysis method was developed which allows the unbiased, robust and efficient investigation of the macrophage spreading response. Combination of this method with siRNA knockdown of selected cytoskeleton-associated phosphoproteins led to the identification of MYO1e and MYO1f as regulators of macrophage spreading. Furthermore, we identified MYO1e in MØ and DC to be essential for the intracellular transport of CCL2 and MHC-II to the cell surface and for optimal stimulation of antigen-specific CD4 T cells.
Chapter I
The gradual turnover of dead organic material into mineral nutrients is a key ecological function, linking decomposition and primary production, the essential parts of the nutrient-energy cycle. However, disturbances in terms of species or resource losses might impair the equilibrium between production and decomposition. Humanity has converted large proportions of natural landscapes and intensified land-use activity for food production. Globally, only very few areas are totally unaffected by human activity today.
To ensure the maintenance of both essential ecosystem services, knowledge about the interplay of biodiversity and ecosystem functioning as well as effects of intensified management on both is crucial. The vast majority of terrestrial biomass production as well as decomposition take place in forest ecosystems. Though forestry has a long sustainable history in Europe, its intensification during the last century has caused severe impacts on forest features and, consequently, on the associated biota, especially deadwood dependent organisms. Among these, saproxylic beetles are the most diverse group in terms of species numbers and functional diversity, but also most endangered due to habitat loss. These features classify them as ideal research organisms to study effects of intensified forestry on ecosystem services. The BELONGDEAD project located in Germany aimed to investigate deadwood decay and functional consequences of diversity changes in the associated fauna on the decomposition process from the initialisation of deadwood decay to complete degradation.
As part of the BeLongDead project, this dissertation focussed on saproxylic beetle species, thereby evaluating (1) regionally effects of tree species identity of fresh deadwood and (2) forest management of varying intensities on the diversity, abundance and community composition of saproxylic beetles (chapter II); (3) the specialisation degree of different trophic guilds of saproxylic beetles, and thus the stability and robustness of their interaction networks against disturbances (chapter III); (4) the impact of environmental features of local to regional spatial scales on species richness of saproxylic beetles differing in their habitat niche in terms of deadwood decay stages (chapter IV).
Chapter II
The vast majority of European forest ecosystems have been anthropogenically affected, leaving less than 1% of the about 1 milliard hectare as natural forests. A long history of forestry and especially the technological progress during the last century have caused massive habitat fragmentation as well as substantial loss of essential resources in European forest ecosystems. Due to this, the substrate-dependent group of saproxylic beetles has experienced severe species losses. Thus, investigations concerning saproxylic diversity and deadwood volume were badly needed. However, the importance of different deadwood in terms of tree species identity for the colonization by saproxylic beetles under different local and regional management regimes is poorly understood. Therefore, we studied possible regional differences in colonization patterns of saproxylic beetle species in a total of 688 fresh deadwood logs of 13 tree species in 9 sites of managed conifer and beech forests, and unmanaged beech forests, respectively. We found that tree species identity was an important driver in determining saproxylic species composition and abundance within fresh deadwood. However, saproxylic species showed different colonization patterns of deadwood items of the same tree species among the study regions. Regionally consistent, conifer forests were most diverse. We attribute the latter result to the historically adaption of saproxylic beetle species to semi-open forests, which conditions are actually best reflected by conifer forests. To preserve a diverse local species pool of early successional saproxylic beetles, we suggest an equal high degree of deadwood diversity in a tree species context in due consideration of regional differences.
Chapter III
The extinction risk of a particular species corresponds with its species-specific requirements on resources and habitat conditions, in other words with the width of the species` ecological niche. Species with a narrow ecological niche are defined as specialists. Members of this group experience higher extinction risk by resource limitation than generalists, which are able to utilize a variety of resources. For the classification of species as specialists or generalists, thus evaluating possible extinction risks, ecologists use the concept of interaction networks. This method has often been applied for mutualistic or antagonistic plant-animal interactions, but information for networks of detritivores is scarce. Therefore, saproxylic beetle species sampled as described in chapter II were categorised according to their larval diet; additionally their interaction networks (N=108) with 13 dead host tree species were analysed. Specialisation degree was highest for wood-digesting beetles and decreased with increasing trophic level. Also the network indices evaluating robustness and generality indicated a higher susceptibility to species extinctions for xylophagous than for mycetophagous and predatory beetles. The specialisation of xylophagous species on specific tree species might be an adaption to tree species specific ingredients stored for defence against pathogens and pests. However, we conclude that the high specialisation degree of xylophages and thus their higher extinction risk by resource loss harbours certain dangers for ecosystem function and stability as species diversity is positively linked to both.
Chapter IV
Populations depend on individual emigration and immigration events to ensure genetic exchange. For successful migration it is of utmost importance that spatially separated populations are obtainable by specimen. Migratory success depends on the one hand on the species dispersal abilities and on the other on the availability of suitable habitats in the surrounding landscape in which the distinct host populations exist. However, consequences of intensive forest management correspond not only to severe reduction of local deadwood amount, but, among others, also a change in tree species composition and high levels of fragmentation in the surrounding forest area. Saproxylic beetle species differ in their dispersal behaviour according to the temporal availability of their preferred habitat. Generally, early successional saproxylic beetles are able to disperse over large distances, whereas beetles inhabiting advanced decayed wood often remain close to their larval habitat. Due to this, environmental factors might affect saproxylic beetle guilds differently. We classified the saproxylic beetles sampled as described in chapter II according to their calculated habitat niche as early, intermediate or late successional saproxylic beetles. For the different guilds the effects of 14 environmental factors on different spatial scales (stand factors at 0.1 km radius, landscape composition at 2 km radius, and regionally differing abiotic factors in 400 km to 700 km distance) were investigated. Consistently for all guilds, species richness decreased with fragmentation at local and landscape scale, and increased in warmer climate. However, we found contradictory results between the guilds to some extent. We relate this to guild specific habitat requirements of the saproxylic beetles. Therefore, for the development of appropriate conservation practices guild-specific requirements saproxylic beetles have to be considered not only locally but on larger spatial scales.
Chapter V
In conclusion, this dissertation identified main drivers of early successional saproxylic beetle species richness on various spatial scales. Our results emphasize the importance to develop management schemes meeting species-specific and guild-specific habitat requirements of the saproxylic beetle fauna at relevant spatial and temporal scales. Therefore, short-term actions suggested for sustainable forest management should be the focus on a diverse tree species composition consisting of indigenous tree species with respect to regional differences. Moreover, senescent trees, fallen and standing deadwood should remain in the forests, and some tree individuals should be allowed to grow old. Long-term actions should involve the reduction of forest fragmentation and the connection of spatial widely separated forest fragments. Furthermore, to fully understand the effects of forest management long-term research should be conducted to compare habitat requirements of intermediate and late successional beetles with the results presented in this dissertation.
Cardiac healing after myocardial infarction (MI) represents the cardinal prerequisite for proper replacement of the irreversibly injured myocardium. In contrast to innate immunity, the functional role of adaptive immunity in postinfarction healing has not been systematically addressed. The present study focused on the influence of CD4+ T lymphocytes on wound healing and cardiac remodeling after experimental myocardial infarction in mice. Both conventional and Foxp3+ regulatory CD4+ T cells (Treg cells) became activated in heart draining lymph nodes after MI and accumulated in the infarcted myocardium. T cell activation was strictly antigen-dependant as T cell receptor-transgenic OT-II mice in which CD4+ T cells exhibit a highly limited T cell
receptor repertoire did not expand in heart-draining lymph nodes post-MI. Both OT-II and major histocompatibility complex class II-deficient mice lacking a CD4+ T cell compartment showed a fatal clinical postinfarction outcome characterized by disturbed scar tissue construction that resulted in impaired survival due to a prevalence of left-ventricular ruptures. To assess the contribution of anti-inflammatory Treg cells on wound healing after MI, the Treg cell compartment was depleted using DEREG mice that specifically express the human diphtheria toxin receptor in Foxp3-positive cells, resulting in Treg cell ablation after diphtheria toxin administration. In a parallel line of experiments, a second model of anti-CD25 antibody-mediated Treg cell immuno-depletion was used. Treg cell ablation prior to MI resulted in adverse postinfarction left-ventricular dilatation associated with cardiac deterioration. Mechanistically, Treg cell depletion resulted in an increased recruitment of pro-inflammatory neutrophils and Ly-6Chigh monocytes into the healing myocardium. Furthermore, Treg cell-ablated mice exhibited an adverse activation of conventional non-regulatory CD4+ and CD8+ T cells that
showed a reinforced infiltration into the infarct zone. Increased synthesis of TNFα and IFNγ by conventional CD4+ and CD8+ T cells in hearts of Treg cell-depleted mice provoked an M1-like macrophage polarization characterized by heightened expression of healing-compromising induced NO synthase, in line with a reduced synthesis of healing-promoting transglutaminase factor XIII (FXIII), osteopontin (OPN) and transforming growth factor beta 1 (TGFβ1).
Therapeutic Treg cell activation by a superagonistic anti-CD28 monoclonal antibody stimulated Treg cell accumulation in the infarct zone and led to an increased expression of mediators inducing an M2-like macrophage polarization state, i.e. interleukin-10, interleukin-13 and TGFβ1. M2-like macrophage differentiation in the healing infarct was associated with heightened expression of scar-forming procollagens as well as scar-stabilizing FXIII and OPN, resulting in improved survival due to a reduced incidence of left-ventricular ruptures. Therapeutic Treg cell activation and the induction of a beneficial M2-like macrophage polarization was further achieved by employing a treatment modality of high clinical potential, i.e. by therapeutic administration of IL-2/ anti-IL-2 monoclonal antibody complexes. The findings of the present study suggest that therapeutic Treg cell activation and the resulting improvement of healing may represent a suitable strategy to attenuate adverse infarct expansion, left-ventricular remodeling, or infarct ruptures in patients with MI.
The Notch signaling pathway is crucial for mammalian heart development. It controls cell-fate decisions, coordinates patterning processes and regulates proliferation and differentiation. Critical Notch effectors are Hey bHLH transcription factors (TF) that are expressed in atrial (Hey1) and ventricular (Hey2) cardiomyocytes (CM) and in the developing endocardium (Hey1/2/L). The importance of Hey proteins for cardiac development is demonstrated by knockout (KO) mice, which suffer from lethal cardiac defects, such as ventricular septum defects (VSD), valve defects and cardiomyopathy. Despite this clear functional relevance, little is known about Hey downstream targets in the heart and the molecular mechanism by which they are regulated.
Here, I use a cell culture system with inducible Hey1, Hey2 or HeyL expression to study Hey target gene regulation in HEK293 cells, in murine embryonic stem cells (ESC) and in ESC derived CM. In HEK293 cells, I could show that genome wide binding sites largely overlap between all three Hey proteins, but HeyL has many additional binding sites that are not bound by Hey1 or Hey2. Shared binding sites are located close to transcription start sites (TSS) where Hey proteins preferentially bind to canonical E boxes, although more loosely defined modes of binding exist. Additional sites only bound by HeyL are more scattered across the genome. The ability of HeyL to bind these sites depends on the C-terminal part of the protein. Although there are genes which are differently regulated by HeyL, it is unclear whether this regulation results from binding of additional sites by HeyL.
Additionally, Hey target gene regulation was studied in ESC and differentiated CM, which are more relevant for the observed cardiac phenotypes. ESC derived CM contract in culture and are positive for typical cardiac markers by qRT PCR and staining. According to these markers differentiation is unaffected by prolonged Hey1 or Hey2 overexpression. Regulated genes are largely redundant between Hey1 and Hey2. These are mainly other TF involved in e.g. developmental processes, apoptosis, cell migration and cell cycle. Many target genes are cell type specifically regulated causing a shift in Hey repression of genes involved in cell migration in ESC to repression of genes involved in cell cycle in CM.
The number of Hey binding sites is reduced in CM and HEK293 cells compared to ESC, most likely due to more regions of dense chromatin in differentiated cells. Binding sites are enriched at the proximal promoters of down-regulated genes, compared to up-or non-regulated genes. This indicates that up-regulation primarily results from indirect effects, while down-regulation is the direct results of Hey binding to target promoters. The extent of repression generally correlates with the amount of Hey binding and subsequent recruitment of histone deacetylases (Hdac) to target promoters resulting in histone H3 deacetylation.
However, in CM the repressive effect of Hey binding on a subset of genes can be annulled, likely due to binding of cardiac specific activators like Srf, Nkx2-5 and Gata4. These factors seem not to interfere with Hey binding in CM, but they recruit histone acetylases such as p300 that may counteract Hey mediated histone H3 deacetylation. Such a scenario explains differential regulation of Hey target genes between ESC and CM resulting in gene and cell-type specific regulation.
Das Enzym Catechol-O- Methyltransferase (COMT) spielt eine wichtige Rolle beim Abbau der Neurotransmitter Dopamin, Noradrenalin und Adrenalin. In dessen Gen befindet sich ein Polymorphismus (SNP), der einen Aminosäureaustausch von Valin zu Methionin an Position 158 der membrangebundenden Isoform bewirkt.. In früheren Studien zeigen die verschiedenen Genotypen des Polymorphismus Unterschiede in der emotionalen Verarbeitung, bei der die COMT Einfluss auf die Verarbeitung von negativen, aber nicht von positiven Stimuli zeigt. Neben emotionalen werden durch die COMT aber auch kognitive präfrontale Prozesse beeinflusst. Eine Aufmerksamkeitslenkung auf Bilder führt im Zeitfenster der EPN und LPP zu ähnlichen Effekten wie beim Betrachten emotionaler Bilder In dieser Studie sollte daher untersucht werden, ob die COMT- Effekte auf die Emotionsverarbeitung durch Aufmerksamkeitsprozesse begründet sind und diese unabhängig vom emotionalen Inhalt durch die Aufmerksamkeitsinstruktion auslösbar sind.
Dafür wurden bei 48 gesunden und entweder Val/Val oder Met/Met- Homozygoten Probanden während der Präsentation von IAPS Bildern mit positiven, negativen und neutralen Bildern ein EEG abgeleitet. Und es wurde die neuronale Aktivierung bei emotionalen Stimuli, in Interaktion mit der Instruktion, die Aufmerksamkeit auf eine bestimmte emotionale Kategorie zu richten, untersucht. Dabei zeigten sich die erwarteten Emotions- und Aufmerksamkeitseffekte auf EPN und LPP. Keinen Einfluss hatte der COMT-Genotyp. Dies könnte an der Interferenz der Emotionseffekte mit kognitiven Effekten des COMT- Polymorphismus liegen.
A precious treasure in traditional Chinese medicine (TCM), acupuncture played a vital and irreplaceable role in contributing to people’s health in the thousands of years of Chinese history, and in 2010 was officially added to the “Representative List of the Intangible Cultural Heritage of Humanity” by the United Nations. Because of the side-effects of long-term drug therapy for pain, and the risks of dependency, acupuncture has been widely accepted as one of the most important alternative choice therapies for treating varieties of acute and chronic pain-related disorders. The clinical application and scientific mechanism research of acupuncture have therefore increased intensively in the last few decades. Besides hand acupuncture, other treatment approaches e.g. electroacupuncture (EA) have been widely accepted and applied as an important acupuncture-related technique for acupuncture analgesia (AA) research. The involvement of opioid peptides and receptors in acute AA has been shown via pre-EA application of opioid receptor/peptide antagonists. However, existing publications still cannot illuminate the answer to the following question: how does sustained antinociception happen by EA treatment? The hypothesis of opioid peptide-mediated tonic AA might be able to answer the question.
In the first part of this thesis, the institution of a reproducible acupuncture treatment model as well as the endogenous opioid-related mechanisms was demonstrated. An anatomically-based three-dimensional (3D) rat model was established to exhibit a digital true-to-life organism, accurate acupoint position and EA treatment protocol on bilateral acupoint GB-30 Huantiao. The optimal EA treatment protocol (100 Hz, 2-3 mA, 0.1 ms, 20 min) at 0 and 24 h after induction of inflammatory pain by complete Freund’s adjuvant (CFA) on conscious free-moving rats was then established. EA elicited significant sustained mechanical and thermal antinociception up to 144 h. Post-EA application of opioid receptors (mu opioid receptor, MOR; delta opioid receptor, DOR) antagonists naloxone (NLX) and naltrindole (NTI), or opioid peptide antibodies anti-beta-endorphin (anti-END), met-enkephalin (anti-ENK) or -dynorphin A (anti-DYN) could also block this effect at a late phase (96 h) of CFA post-EA, which suggested opioid-dependent tonic analgesia was produced by EA. Meanwhile, EA also reduced paw temperature and volume at 72-144 h post CFA indicating anti-inflammatory effects. Nociceptive thresholds were assessed by paw pressure threshold (Randall-Sellito) or paw withdrawal latency (Hargreaves) and an anti-inflammatory effect was evaluated by measurement of plantar temperature and volume of inflamed paw.
The second part of the thesis further suggests the correlation between the chemokine CXCL10 (= interferon-gamma inducible protein 10, IP-10) and opioid peptides in EA-induced antinociception. Based on a comprehensive Cytokine Array of 29 cytokines, targeted cytokines interleukin (IL)-1alpha, interleukin (IL)-1beta, tumor necrosis factor (TNF)-alpha, interleukin (IL)-4, interleukin (IL)-13, interferon (IFN)-gamma as well as CXCL10 were selected and quantified by enzyme-linked immunosorbent assay (ELISA), and real time reverse transcription-polymerase chain reaction (RT-PCR) quantification confirmed upregulation of CXCL10 mRNA at both 72 and 96 h. The following hyperalgesic assessment suggested the antinociceptive effect of CXCL10. The double immunostaining localizing opioid peptides with macrophages expressed the evident upregulation of CXCR3-receptor of CXCL10 in EA treated samples as well as the significant upregulation or downregulation of opioid peptides by repeated treatment of CXCL10 or antibody of CXCL10 via behavioral tests and immune staining. Subsequent immunoblotting measurements showed non-alteration of opioid receptor level by EA, indicating that the opioid receptors did not apparently contribute to AA in the present studies. In vitro, CXCL10 did not directly trigger opioid peptide END release from freshly isolated rat macrophages. This might implicate an indirect property of CXCL10 in vitro stimulating the opioid peptide-containing macrophages by requiring additional mediators in inflammatory tissue.
In summary, this project intended to explore the peripheral opioid-dependent analgesic mechanisms of acupuncture with a novel 3D treatment rat model and put forward new information to support the pivot role of chemokine CXCL10 in mediating EA-induced tonic antinociception via peripheral opioid peptides.
Remote sensing for disease risk profiling: a spatial analysis of schistosomiasis in West Africa
(2014)
Global environmental change leads to the emergence of new human health risks. As a consequence, transmission opportunities of environment-related diseases are transformed and human infection with new emerging pathogens increase. The main motivation for this study is the considerable demand for disease surveillance and monitoring in relation to dynamic environmental drivers. Remote sensing (RS) data belong to the key data sources for environmental modelling due to their capabilities to deliver spatially continuous information repeatedly for large areas with an ecologically adequate spatial resolution.
A major research gap as identified by this study is the disregard of the spatial mismatch inherent in current modelling approaches of profiling disease risk using remote sensing data. Typically, epidemiological data are aggregated at school or village level. However, these point data do neither represent the spatial distribution of habitats, where disease-related species find their suitable environmental conditions, nor the place, where infection has occurred. As a consequence, the prevalence data and remotely sensed environmental variables, which aim to characterise the habitat of disease-related species, are spatially disjunct.
The main objective of this study is to improve RS-based disease risk models by incorporating the ecological and spatial context of disease transmission. Exemplified by the analysis of the human schistosomiasis disease in West Africa, this objective includes the quantification of the impact of scales and ecological regions on model performance.
In this study, the conditions that modify the transmission of schistosomiasis are reviewed in detail. A conceptual underpinning of the linkages between geographical RS measures, disease transmission ecology, and epidemiological survey data is developed. During a field-based analysis, environmental suitability for schistosomiasis transmission was assessed on the ground, which is then quantified by a habitat suitability index (HSI) and applied to RS data. This conceptual model of environmental suitability is refined by the development of a hierarchical model approach that statistically links school-based disease prevalence with the ecologically relevant measurements of RS data. The statistical models of schistosomiasis risk are derived from two different algorithms; the Random Forest and the partial least squares regression (PLSR). Scale impact is analysed based on different spatial resolutions of RS data. Furthermore, varying buffer extents are analysed around school-based measurements. Three distinctive sites of Burkina Faso and Côte d’Ivoire are specifically modelled to represent a gradient of ecozones from dry savannah to tropical rainforest including flat and mountainous regions.
The model results reveal the applicability of RS data to spatially delineate and quantitatively evaluate environmental suitability for the transmission of schistosomiasis. In specific, the multi-temporal derivation of water bodies and the assessment of their riparian vegetation coverage based on high-resolution RapidEye and Landsat data proofed relevant. In contrast, elevation data and water surface temperature are constraint in their ability to characterise habitat conditions for disease-related parasites and freshwater snail species. With increasing buffer extent observed around the school location, the performance of statistical models increases, improving the prediction of transmission risk. The most important RS variables identified to model schistosomiasis risk are the measure of distance to water bodies, topographic variables, and land surface temperature (LST). However, each ecological region requires a different set of RS variables to optimise the modelling of schistosomiasis risk. A key result of the hierarchical model approach is its superior performance to explain the spatial risk of schistosomiasis.
Overall, this study stresses the key importance of considering the ecological and spatial context for disease risk profiling and demonstrates the potential of RS data. The methodological approach of this study contributes substantially to provide more accurate and relevant geoinformation, which supports an efficient planning and decision-making within the public health sector.
Die Deregulation des Transkriptionsfaktors Myc ist ein charakteristisches Merkmal für eine Vielzahl von humanen Tumoren. Durch die transkriptionelle Aktivierung von Genen, die im Zusammenhang mit Metabolismus, Translation und Proliferation stehen, wird dadurch das Tumorwachstum begünstigt. Myc bildet zudem mit dem Zinkfinger-Protein Miz1 einen Komplex, der hemmend auf die Transkription von Zielgenen wirkt. Bisher sind nur wenige Myc/Miz1-reprimierte Zielgene bekannt. In der vorliegenden Arbeit konnten genomweit die DNA-Bindestellen von Myc und Miz1 durch Chromatin-Immunpräzipitationen gefolgt von Hochdurchsatzsequenzierung in einer Zervixkarzinomzelllinie bestimmt werden.
Es konnte gezeigt werden, dass Myc an Promotoren aller drei RNA-Polymerasen sowie in enhancer-Regionen bindet, während Miz1 Kernpromotoren von RNA-Polymerase II- und III-transkribierten Genen besetzt. reChIP-Experimente zeigten, dass Myc und Miz1 als Komplex an Promotoren von Zielgenen binden. Zudem wurde ein Miz1-DNA-Bindemotiv identifiziert und der transaktivierende Einfluss von Miz1 auf Gene mit diesem Motiv nachgewiesen. Das überwiegende Vorhandensein von Myc/Max-Komplexen führt zu einer Transaktivierung von E-Box-haltigen Promotoren. Andererseits erfolgt die transkriptionelle Repression von Myc/Miz1-Zielgenen an Promotoren, an denen der Myc/Miz1-Komplex vorherrscht.
In aktuellen Publikationen konnte gezeigt werden, dass nach mitogener Stimulation von Lymphozyten es zu einer Erhöhung der Myc-Expression kommt, wodurch Myc als ein genereller Transkriptionsaktivator fungiert, der alle Gene gleichermaßen induziert. Trotz hoher Myc-Mengen in Tumorzellen konnte die generelle Myc-vermittelte Transaktivierung nicht nachgewiesen werden. Zusätzlich zur Myc-abhängigen Transaktivierung von E-Box-haltigen Genen, z. B. beteiligt an Translation und RNA-Prozessierung, und der Miz1-vermittelten transkriptionellen Aktivierung von Genen mit Miz1-Motiv (z. B. involviert in Autophagie), konnte entgegen dem Modell der generellen Genamplifikation durch Myc eine Myc/Miz1-abhängige Repression von Zielgenen belegt werden. Die neu gewonnenen Erkenntnisse des Bindeverhaltens des Myc/Miz1-Komplexes und der daraus resultierenden transkriptionellen Regulation von Myc/Miz1-Zielgenen ermöglichen ein besseres Verständnis der Myc-Funktion in Tumorzellen und könnte zur Verbesserung von Tumortherapien führen.
Mesoporöse Silica-Materialien (MSM) und mikroporöse Zeolithe besitzen große innere Oberflächen und eine damit verbundene hohe Speicherkapazität von verschiedenen Molekülen. Auf Grund dieser Eigenschaften stehen poröse, silicatische Materialien seit etwa 10 Jahren im Focus der Entwicklung neuartiger Wirkstoffspeichersysteme (WSS). Die innerhalb dieser Thematik veröffentlichten wissenschaftlichen Arbeiten konnten die Fragestellungen nach dem exakten Mechanismus der Wirkstoffspeicherung und Wiederfreisetzung bisher nicht komplett beantworten.
Die vorliegende Arbeit beschäftigt sich im Besonderen mit der Beladung und Abgabe des Lokalanästhetikum Lidocain-Hydrochlorid (LidHCl) in bekannten MSM wie SBA15, MCM41 oder HMS, sowie in unterschiedlich modifizierten Zeolithen vom Typ FAU und BEA. Zusätzlich wurde der Einfluss von organischen Ankergruppen innerhalb der Porenstruktur von SBA15 auf dessen Sorptions-eigenschaften hin untersucht.
Ziel der Promotionsarbeit ist die Aufklärung des Speicher- und Freisetzungs-mechanismus dieses speziellen Speichersystems. Dazu wurden zunächst detaillierte Analysen der reinen und der mit Wirkstoff beladenen Matrizes via N2-Sorption (BET-, BJH-, t-plot-Methode), XRD, SAXS, DSC und TG durchgeführt. Außerdem wurden grafische Profile erstellt, die das Verhältnis der ad- bzw. desorbierten Wirkstoffmengen gegen die bei der Beladung eingesetzten Wirkstoffkonzentrationen (Speicherprofil) bzw. gegen die bei der Wiederfreisetzung verstrichene Zeit (Freisetzungsprofil) wiedergeben. Durch die Kombination dieser Untersuchungsmethoden konnte der jeweilige Sorptionsmechanismus, sowie der Speicherort der Wirkstoffmoleküle innerhalb der ausgewählten Matrix erfasst werden.
Der Vergleich der verschiedenen, hier untersuchten Speichersysteme zeigt, dass neben der Porengröße, die Art der Adsorbens-Adsorbat-Wechselwirkung, aber auch die Stabilität der Porenstruktur einen großen Einfluss auf die Sorption von Molekülen nimmt.
In this work the synthesis, the spectroscopic and electrochemical investigation as well as some applications of a broad diversity of indolenine squaraine dyes were presented. This diversity was based on two parent squaraine dyes, one standard trans-configured compound (M1) and one in which one central oxygen atom was replaced by a dicyanomethylene moiety (M2), which increased the acceptor strength and induced a cis-configuration. The variety of synthesised dyes included functionalised squaraine monomers, donor- and acceptor-substituted monomeric model squaraines, donor- and acceptor-squaraine copolymers, pure squaraine homopolymers, a squaraine-squaraine copolymer, as well as some conjugated cyclic oligomers.
In order to be able to synthesise all these different kinds of dyes, several bromine and boronic ester derivatives were synthesised, which enabled the use of the Suzuki cross coupling reaction, to generate model dyes and copolymers. In addition, the bromine derivatives were used to carry out the Yamamoto homocoupling reaction to the respective homopolymers and macrocycles.
The absorption maximum of unsubstituted reference dye M1 was found at ~ 15500 cm–1, while that of M2 was red-shifted to ~ 14300 cm–1 due to the increased acceptor strength of the central unit. The extinction coefficients were in the order of ~ 300000 M–1 cm–1 and ~ 200000 M–1 cm–1, respectively. It was found that the implementation of functional groups (M3–M9), additional electron donors (M10–M19) or acceptors (M20–M22) at the periphery lead to bathochromic shifts of the absorption depending on the strength of either - and/or -donating properties of the substituents.
For the bis- and triarylamine substituted dyes M10–M13 and the dibrominated dyes M5 and M7 the electronic structure of the mono- and diradical (di)cations was explored using the interplay of cyclic voltammetry, spectroelectrochemistry, and DFT calculations. It was demonstrated that the monoradical cations still show a cyanine-like character and are delocalised Robin-Day class III species due to the low redox potential of the squaraine bridge between the additional amine redox centres. To the best of my knowledge, this made M13+∙, with an N-N-distance of 26 bonds between the additional redox centres to the longest bis(triarylamine) radical cation that is completely delocalised. For the diradical dications, the situation was of larger complexity. The computed most stable energetic state of the dianisylamine-substituted dyes turned out to be a broken-symmetry state with almost equal contributions of an open-shell singlet and triplet state. In addition, it was shown that the HOMO–1→HOMO transition dominated the absorption spectra of the diradical dications where the trans-/cis-configuration of the squaraines had a direct impact due to symmetry reasons.
Based on the donor–squaraine model compounds M10–M19, a series of donor–squaraine copolymers was synthesised (P7–P12) in order to further red shift and broaden the low energy absorption band. However, these effects were only of marginal extent. Both the optical and the electrochemical derived band gaps were barely lowered compared to the respective monomeric model dyes. This was assigned to an increased squaraine-squaraine distance and resulting lower exciton coupling between the squaraine chromophores due to the bridging units. In addition, according to semiempirical calculations the bridges were twisted out of the squaraine plane what reduced conjugational effects between the chromophores. To sum up, the idea to insert additional electron rich bridging units in order to create copolymers with broad and red-shifted absorption did not fully work out for the presented systems.
The addition of strong electron accepting NDI units at the periphery resulted in M21, the most unique monomeric model squaraine in this work. The common picture of a sharp low energy squaraine absorption completely altered due to the addition of the NDIs and a rather broad and solvent dependent low energy absorption was found. Spectroelectrochemical experiments and semiempirical calculations showed that this band is a superposition of the common squaraine HOMO→LUMO transition and a partial squaraine→NDI charge transfer transition. The latter was lost upon oxidation of the squaraine and the absorption spectrum of the monocation of M21 was found to be nearly a 1:1 image of a pure squaraine monocation. Both the monomeric model M21 and the respective copolymer P13 showed low electrochemically obtained band gaps of 1.05–1.20 eV, which were the lowest of all squaraines in this work. For both dyes, transient absorption measurements in the fs-time regime revealed the ultrafast formation of a CS state via an intermediate CT state within a few ps. Besides, charge recombination to the ground state also occured within a few ps. In the polymer, there was barely any further energy or charge transfer within the excited state lifetime and therefore the CS state was confined on adjacent squaraine-NDI pairs and did not further travel along the polymer strand.
The Ni-mediated Yamamoto homocoupling reaction was applied for the synthesis of the homopolymers (P1–P5). In contrast to the donor–squaraine copolymers, those polymers revealed strongly red-shifted and broad absorption in the red to NIR region in addition to a sharp fluorescence. These features could be explained to originate mainly from the exciton coupling of localised excited states and the presence of different superstructures in solution. For the polymers P1 and P2, an elongated J-type polymer chain caused the strong lowest energy absorption band whereas a zig-zag type arrangement of the single chromophores lead to transitions into both low and high energy excited states of the excitonic manifold. For the polymers P3 and P4, several polymer fractions of different size were investigated. Here, also an elongated chain with J-type character induced the lowest energy absorption band whereas a helical H-type arrangement caused transitions to higher energies of the excitonic manifold. The fractions to which these structures were formed depended on the chain length and the solvent. In thin film measurements, it was shown that the initially in solution formed superstructures were partly retained in the thin film but could be altered by annealing procedures. A control of the superstructures should enable the controlled tuning of the optical properties. Despite the strong interaction of the chromophores in the excited state, the redox potentials of the homopolymers barely differed to those of the respective reference dyes, indicating negligible electronic interaction in the ground state.
In addition squaraine-squaraine copolymer P6, consisting of alternating parent dyes M1 and M2, was synthesised. Likewise to the homopolymers, a broad and red-shifted absorption was observed. This was explained by exciton coupling theory, which was extended to also suit alternating copolymers. In toluene, an extraordinary narrow and intense lowest energy absorption band was observed. This exchange narrowing might be a result of a highly ordered J-type structure of the polymer especially in this solvent because it was not found in others. The features of the polymer may be compared to typical J-aggregates formed from monomeric cyanine molecules for example and the polymer used as model for excitonic interactions in an alternating copolymer. Transient absorption measurements revealed a strong energy dependence of the decay traces of the copolymer, most strikingly at early decay times. This was assigned to the occurrence of multiple excitations of one polymer strand (due to the large extinction coefficients of the polymer) and resulting exciton-exciton annihilation. Due to the large exciton diffusion constants that were estimated, the static exciton-exciton annihilation was the rate limiting process of the decay, in contrast to other conjugated polymers, where in thin film measurements the decay was diffusion controlled.
To sum up, for the polymers consisting of exclusively squaraine chromophores, it was shown that the exciton coupling of single chromophores with strong transition dipole moments was a fruitful way to tune the absorption spectra.
As a side product of some of the polycondensation reactions, unprecedented cyclic conjugated oligomers such as the triarylamine-bridged dimer Dim1, the cyclic homotrimers Tri1–Tri3, and the tetramer Tet1 were obtained by recycling GPC in low yields. Especially the cyclic trimers showed unusual absorption and even more extraordinary fluorescence properties. They showed multiple fluorescence bands in the NIR that covered a range from ~ 8000–12500 cm–1 (800–1250 nm). First hints from theoretical calculations indicated that the trimer was not fully planar but comprised a mixture of both planar and bent single squaraine chromophores. However, final results of the calculations were still missing at the time of writing.
In the last part of this work, the application of some monomeric and polymeric squaraines in binary and ternary bulk heterojunction solar cells was demonstrated. Also the utilisation as a dopant in a polymer matrix in an OLED device was shown. The homopolymers P1–P4 were tested in the binary BHJ solar cells revealing poor performances and especially very low short circuit currents. The utilisation of the polymers P3 and P4 that carried the dicyanomethylene group resulted in higher open circuit voltages due to the lower LUMO energy levels but still an overall poor performance. Neither for the different alkyl chains nor for the size of the polymers was a trend observed. In the ternary BHJ solar cells, small amounts of either monomer M14 or polymers P1A, P4–1 or P13 were added to a P3HT/PCBM system in order to generate an additional pathway for charge or energy transfer that should result in a better device performance. However, for none of the tested squaraines, improved solar cells could be built. In similarity to the binary solar cells, the short circuit currents were lower compared to a P3HT/PCBM reference device. These low short circuit currents indicated that the morphology of the squaraine dyes was the major limitation in those devices. It is possible that the dimethyl groups at the indolenine hindered a favoured alignment of the compounds that would allow decent charge transport. In the squaraine doped OLED the squaraine M6 worked rather well as an NIR emitter. Already at low dye loads the fluorescence of the host polymer SY-PPV was completely quenchend and emission from the squaraine was observed. For electroluminescence measurements, a lower dye load (0.5 wt.%) compared to the photoluminescence measurements was sufficient, indicating that apart from FRET additional quenching mechanisms were at work in the electrically driven devices such as charge carrier dynamics.
Studies on receptor signaling and regulation in platelets and T cells from genetically modified mice
(2014)
Receptors with tyrosine-based signaling motifs control essential functions of hematopoietic cells, including lymphocytes and platelets. Downstream of the platelet receptor glycoprotein (GP) VI and the T cell receptor (TCR) the immunoreceptor tyrosine-based activation motif (ITAM) initiates a signaling cascade that involves kinases, adapter and effector proteins and finally leads to cellular activation. This thesis summarizes the results of three studies investigating different aspects of receptor signaling and regulation in platelets and T cells.
In the first part, the impact of constitutive Ca2+ influx on TCR signaling and T cell physiology was investigated using a transgenic mouse line with a mutation in the Ca2+ sensor stromal interaction molecule 1 (STIM1). The elevated cytoplasmic Ca2+ level resulted in an altered phosphorylation pattern of the key enzyme phospholipase (PL) Cγ1 in response to TCR stimulation, but without affecting its enzymatic activity. Withdrawal of extracellular Ca2+ or inhibition of the phosphatase calcineurin restored the normal phosphorylation pattern. In addition, there was a decrease in the release of Th2-type cytokines interleukin 4, 5 and 13 upon stimulation in vitro.
The second part of the thesis deals with the role of the adapter protein growth factor receptor-bound protein 2 (Grb2) in platelets using a megakaryocyte/platelet-specific knockout mouse line. Loss of Grb2 severely impaired signaling of GPVI and C-type lectin-like receptor 2 (CLEC-2), a related hemITAM receptor. This was attributed to defective stabilization of the linker for activation of T cells (LAT) signalosome and resulted in reduced adhesion, aggregation, Ca2+ mobilization and procoagulant activity downstream of (hem)ITAM-coupled receptors in vitro. In contrast, the signaling pathways of G protein-coupled receptors (GPCRs) and the integrin αIIbβ3, which do not utilize the LAT signalosome, were unaffected. In vivo, the defective (hem)ITAM signaling caused prolonged bleeding times, however, thrombus formation was only affected under conditions where GPCR signaling was impaired (upon acetylsalicylic acid treatment). These results establish Grb2 as an important adapter protein in the propagation of GPVI- and CLEC-2-induced signals.
Finally, the proteolytic regulation of the immunoreceptor tyrosine-based switch motif (ITSM)-bearing receptor CD84 in platelets was investigated. This study demonstrated that in mice CD84 is cleaved by two distinct and independent proteolytic mechanisms upon platelet activation: shedding of the extracellular part, which is exclusively mediated by a disintegrin and metalloproteinase (ADAM) 10 and cleavage of the intracellular C-terminus by the protease calpain. Finally, the analysis of soluble CD84 levels in the plasma of transgenic mice revealed that shedding of CD84 by ADAM10 occurs constitutively in vivo.
The auditory system is an exquisitely complex sensory organ dependent upon the synchronization of numerous processes for proper function. The molecular characterization of hereditary hearing loss is complicated by extreme genetic heterogeneity, wherein hundreds of genes dispersed genome-wide play a central and irreplaceable role in normal hearing function. The present study explores this area on a genome-wide and single gene basis for the detection of genetic mutations playing critical roles in human hearing.
This work initiated with a high resolution SNP array study involving 109 individuals. A 6.9 Mb heterozygous deletion on chromosome 4q35.1q35.2 was identified in a syndromic patient that was in agreement with a chromosome 4q deletion syndrome diagnosis. A 99.9 kb heterozygous deletion of exons 58-64 in USH2A was identified in one patient. Two homozygous deletions and five heterozygous deletions in STRC (DFNB16) were also detected. The homozygous deletions alone were enough to resolve the hearing impairment in the two patients. A Sanger sequencing assay was developed to exclude a pseudogene with a high percentage sequence identity to STRC from the analysis, which further solved three of the six heterozygous deletion patients with the hemizygous, in silico predicted pathogenic mutations c.2726A>T (p.H909L), c.4918C>T (p.L1640F), and c.4402C>T (p.R1468X). A single patient who was copy neutral for STRC and without pathogenic copy number variations had compound heterozygous mutations [c. 2303_2313+1del12 (p.G768Vfs*77) and c.5125A>G (p.T1709A)] in STRC. It has been shown that STRC has been previously underestimated as a hearing loss gene. One additional patient is described who does not have pathogenic copy number variation but is the only affected member of his family having hearing loss with a paternally segregating translocation t(10;15)(q26.13;q21.1).
Twenty-four patients without chromosomal aberrations and the above described patient with an USH2A heterozygous deletion were subjected to a targeted hearing loss gene next generation sequencing panel consisting of either 80 or 129 hearing-relevant genes. The patient having the USH2A heterozygous deletion also disclosed a second mutation in this gene [c.2276G>T (p.C759F)]. This compound heterozygous mutation is the most likely cause of hearing loss in this patient. Nine mutations in genes conferring autosomal dominant hearing loss [ACTG1 (DFNA20/26); CCDC50 (DFNA44); EYA4 (DFNA10); GRHL2 (DFNA28); MYH14 (DFNA4A); MYO6 (DFNA22); TCF21 and twice in MYO1A (DFNA48)] and four genes causing autosomal recessive hearing loss were detected [GJB2 (DFNB1A); MYO7A (DFNB2); MYO15A (DFNB3), and USH2A]. Nine normal hearing controls were also included. Statistical significance was achieved comparing controls and patients that revealed an excess of mutations in the hearing loss patients compared to the control group. The family with the GRHL2 c.1258-1G>A mutation is only the second family published worldwide with a mutation described in this gene to date, supporting the initial claim of this gene causing DFNA28 hearing loss. Audiogram analysis of five affected family members uncovered the progressive nature of DFNA28 hearing impairment. Regression analysis predicted the annual threshold deterioration in each of the five family members with multiple audiograms available over a number of years.
In einer ständig älter werdenden Bevölkerung, in der auch die Senioren einen unverändert hohen Anspruch an ihre Lebensqualität aufrechterhalten, kommt dem Ersatz verschlissener Gelenke und hier besonders der Hüftendoprothetik eine ständig wachsende Bedeutung zu. Ausgehend von den Erfolgen der minimal-invasiven Chirurgie in anderen chirurgischen Disziplinen entwickelte sich dieser Zweig seit Beginn des Jahrtausendes auch in der Hüftchirurgie: 2005 stellte Rachbauer eine minimal-invasive Variante des seit 1887 bekannten anterioren Zugangs zur Hüfttotalendoprothesenimplantation vor. Zum kurzfristigen postoperativen Intervall existieren bereits zahlreiche Studien. Hier zeigt der anteriore Zugang entscheidende Vorteile im Vergleich zu anderen Zugängen. Hervorzuheben sind ein geringeres postoperatives Schmerzausmaß, eine kürzere stationäre Liegedauer und eine schnellere Rehabiliation. Ein gravierender Nachteil des anterioren Zugangs besteht darin, dass er aufgrund des schmalen Operationskanals eine hohe Qualifikation des Operateurs erfordert und mit einer anfänglich erhöhten Komplikationsrate vergesellschaftet sein kann.
Ziel der vorliegenden Arbeit war es, die Resultate des minimal-invasiven anterioren Zugangs in einem mittelfristigen postoperativen Intervall mit den Resultaten des lateralen Zugangs, den man als eine weithin etablierte konventionelle Methode betrachten kann, zu vergleichen. Untersucht wurden 85 über einen minimal-invasiven anterioren Zugang implantierte primäre Hüfttotalendoprothesen nach durchschnittlich 3,7 Jahren post operationem, denen 86 Fälle mit einem lateralen Zugang nach durchschnittlich 5,5 Jahren entgegengestellt wurden. Beide Gruppen unterschieden sich nicht signifikant in Alter und Geschlechterverteilung. Der signifikante Unterschied der Nachuntersuchungsintervalle ist ohne Relevanz, da sich sich beide Gruppen in einer komplikationsarmen postoperativen Phase befinden, die in etwa vom 2. bis zum 10. Postoperativen Jahr geht.
Die Gruppen wurden in Funktion (HHS), Aktivität (UCLA activity score), Schmerzen (abgeleitet aus dem HHS), Komplikationsraten und Gesundheitsempfinden (SF-36) miteinander verglichen.
Die vorliegende Arbeit kam zu den folgenden Ergebnissen über den mittelfristigen Zeitraum: Die Unterschiede in der Funktion waren marginal, die HHS-Durchschnittswerte in beiden Gruppen waren exzellent und nicht signifikant unterschiedlich. Ebenso zeigten beide Gruppen gleichwertige Ergebnisse im subjektiven Gesundheitsempfinden (SF-36). Ein weiteres wichtiges Erfolgskriterium war die Frage nach der durch die Operation erreichten Aktivität. Hier fand sich eine Diskrepanz zwischen UCLA und TWB. Der UCLA ist zur Aktivitätsmessung weit verbreitet. Im UCLA zeigten sich die Patienten der lateralen Gruppe aktiver. Der TWB ergab gleiche Aktivität in beiden Gruppen. Nach dem eingehenden Vergleich beider Fragebögen, kamen wir in dieser Arbeit jedoch zu der Auffassung, dass der UCLA zwar als ein schnell erhebbarer Test für den klinischen Alltag praktisch ist, der wesentlich aufwendigere TWB aber zuverlässigere Ergebnisse liefert.
Die Komplikationsraten waren in beiden Gruppen gering. Die Wahrscheinlichkeit, eine der erfassten Komplikationen zu erleiden, betrug 10,7% für den minimal-invasiven und 10,5% für den klassischen Zugang. Um aber nicht nur die Quantität, sondern auch die Qualität der aufgetretenen Komplikationen erfassen zu können, wurde in dieser Arbeit der Komplikationsindex eingeführt, der die registrierten Komplikationen in Gruppen verschiedener Schweregrade unterteilt. Eine schwere Komplikation floss mit 10 Punkten, eine mittlere mit 5 und eine leichte Komplikation mit einem Punkt in den Komplikationsindex ein. Der anteriore Zugang zeigte so mit insgesamt 26 Punkten einen deutlich geringeren Komplikationsindex als der laterale mit insgesamt 60 Punkten. Dem entsprach eine Reoperationsrate von 1,2% unter den anterioren Patienten im Vergleich zu 3,3% bei den lateralen. Die Schaft- und die Pfannenüberlebensrate lag in beiden Gruppen bei 100%.
Zusammenfassend zeigt die vorliegende Arbeit, dass der anteriore Zugang viele Vorteile gegenüber dem lateralen Zugang aufweist. Die entscheidenden Unterschiede finden sich im kurzfristigen postoperativen Zeitraum. Zu einem mittelfristigen Zeitpunkt erzielen beide Zugänge gleichwertige Ergebnisse.
Welche langfristigen Resultate das noch relativ junge Verfahren des minimal-invasiven anterioren Zugangs hervorbringen wird, muss durch künftige prospektiv randomisierte Studien großer Fallzahlen belegt werden.
Considering its social, economic and natural conditions the Mediterranean Area is a highly vulnerable region by designated affections of climate change. Furthermore, its climatic characteristics are subordinated to high natural variability and are steered by various elements, leading to strong seasonal alterations. Additionally, General Circulation Models project compelling trends in specific climate variables within this region. These circumstances recommend this region for the scientific analyses conducted within this study. Based on the data of the CMIP3 database, the fundamental aim of this study is a detailed investigation of the total variability and the accompanied uncertainty, which superpose these trends, in the projections of temperature, precipitation and sea-level pressure by GCMs and their specific realizations. Special focus in the whole study is dedicated to the German model ECHAM5/MPI-OM. Following this ambition detailed trends and mean values are calculated and displayed for meaningful time periods and compared to reanalysis data of ERA40 and NCEP. To provide quantitative comparison the mentioned data are interpolated to a common 3x3° grid.
The total amount of variability is separated in its contributors by the application of an Analysis of Variance (ANOVA). For individual GCMs and their ensemble-members this is done with the application of a 1-way ANOVA, separating a treatment common to all ensemble-members and variability perturbating the signal given by different initial conditions. With the 2-way ANOVA the projections of numerous models and their realizations are analysed and the total amount of variability is separated into a common treatment effect, a linear bias between the models, an interaction coefficient and the residuals.
By doing this, the study is fulfilled in a very detailed approach, by considering yearly and seasonal variations in various reasonable time periods of 1961-2000 to match up with the reanalysis data, from 1961-2050 to provide a transient time period, 2001-2098 with exclusive regard on future simulations and 1901-2098 to comprise a time period of maximum length. The statistical analyses are conducted for regional-averages on the one hand and with respect to individual grid-cells on the other hand. For each of these applications the SRES scenarios of A1B, A2 and B1 are utilized. Furthermore, the spatial approach of the ANOVA is substituted by a temporal approach detecting the temporal development of individual variables. Additionally, an attempt is made to enlarge the signal by applying selected statistical methods.
In the detailed investigation it becomes evident, that the different parameters (i.e. length of temporal period, geographic location, climate variable, season, scenarios, models, etc…) have compelling impact on the results, either in enforcing or weakening them by different combinations. This holds on the one hand for the means and trends but also on the other hand for the contributions of the variabilities affecting the uncertainty and the signal. While temperature is a climate variable showing strong signals across these parameters, for precipitation mainly the noise comes to the fore, while for sea-level pressure a more differentiated result manifests. In turn, this recommends the distinguished consideration of the individual parameters in climate impact studies and processes in model generation, as the affecting parameters also provide information about the linkage within the system.
Finally, an investigation of extreme precipitation is conducted, implementing the variables of the total amount of heavy precipitation, the frequency of heavy-precipitation events, the percentage of this heavy precipitation to overall precipitation and the mean daily intensity from events of heavy precipitation. Each time heavy precipitation is defined to exceed the 95th percentile of overall precipitation. Consecutively mean values of these variables are displayed for ECHAM5/MPI-OM and the multi-model mean and climate sensitivities, by means of their difference between their average of the past period of 1981-2000 and the average of one of the future periods of 2046-2065 or 2081-2100. Following this investigation again an ANOVA is conducted providing a quantitative measurement of the severity of change of trends in heavy precipitation across several GCMs.
Besides it is a difficult task to account for extreme precipitation by GCMs, it is noteworthy that the investigated models differ highly in their projections, resulting partially in a more smoothed and meaningful multi-model mean. Seasonal alterations of the strength of this behaviour are quantitatively supported by the ANOVA.
Als Herzfrequenzvariabilität (HRV) wird die Frequenzänderung zwischen den einzelnen Herzaktionen bezeichnet. Da das autonome Nervensystem – vor allem über die respiratorische Sinusarrhythmie – einen großen Einfluss auf die HRV hat, kann umgekehrt von der HRV auf den aktuellen Zustand des autonomen Nervensystems rückgeschlossen werden. So ist bekannt, dass anhand der HRV Aussagen über die Prognose kritisch kranker Patienten auf Intensivstationen getroffen werden können. Aber auch körperliche und mentale Belastung verändern die HRV messbar.
Mit dem Ziel, den Einfluss anspruchsvoller Hörsituationen auf die HRV zu untersuchen, wurden bei 20 Probanden Sprachtests (Freiburger Einsilber) mit verschiedenen Schalldruckpegeln durchgeführt. Vor und während den Sprachtests erfolgte die Aufzeichnung eines EKG, aus dem verschiedene Komponenten der HRV berechnet wurden.
Es zeigte sich, dass anspruchsvolle Hörsituationen die HRV beeinflussen. Komponenten der HRV ändern sich sowohl mit steigender Schwierigkeit des Sprachtests, als auch gegenüber einem Ruheintervall signifikant.
Die Messung der HRV scheint deshalb eine Möglichkeit, Höranstrengung objektiv messbar zu machen.
Desmosomen sind Zell-Zell-Kontakte, die eine starke interzelluläre Haftung vermitteln. Sie sind daher besonders wichtig für die Integrität von Geweben wie der Haut, die laufend einer starken mechanischen Beanspruchung ausgesetzt sind. Pemphigus vulgaris ist eine Autoimmundermatose, die zur Ausbildung schlaffer Blasen durch Spaltbildung in der Epidermis führt. Als ursächlich dafür wurden Autoantikörper gegen die desmosomalen Cadherine Dsg1 und 3 herausgestellt, die in Desmosomen vorkommen. cAMP ist ein wichtiger Botenstoff des Zellstoffwechsels und an der Regulierung und Modulation einer Vielzahl von zellulären Prozessen beteiligt, darunter auch die Stabilisierung der Endothelbarriere über Stärkung der Haftung eines klassischen Cadherins, nämlich VE-Cadherin.
In Anknüpfung an die vorliegenden Daten aus Pemphigus- und Endothelforschung beschäftigt sich diese Arbeit mit der Rolle von cAMP bei Pemphigus vulgaris. Es wurde in Keratinozytenkultur sowie im neonatalen Pemphigus-Mausmodell untersucht, ob die Erhöhung der intrazellulären cAMP-Spiegel einen Einfluss auf PV-IgG-induzierte morphologische und funktionelle Veränderungen hat.
Eine Erhöhung des intrazellulären cAMP-Spiegels konnte sowohl in vitro als auch in vivo als protektiv herausgestellt werden. In Keratinozytenkultur konnte gezeigt werden, dass eine Erhöhung des intrazellulären cAMP-Spiegels durch Forskolin/Rolipram oder Isoproterenol in der Lage war, die PV-IgG-induzierten morphologischen Veränderungen, die Dsg3-Depletion, sowie den Adhäsionsverlust zu blockieren. Weiterhin konnte die Blasenbildung in vivo durch cAMP-Erhöhung vollständig verhindert werden.
Im Anschluss wurde untersucht, ob die Inkubation mit PV-IgGs einen Einfluss auf die intrazellulären cAMP-Spiegel in vitro hat. Dabei konnte gezeigt werden, dass die Zellen mit einer Erhöhung der cAMP-Spiegel reagieren, wenn auch in einem geringeren Ausmaß als durch die eingesetzten Mediatoren. Somit kann cAMP als Rettungsmechanismus der Zellen angesehen werden und es wurde daraufhin der Einfluss von cAMP auf die Regeneration von Keratinozyten nach PV-IgG-Inkubation untersucht. Dieser Prozess konnte durch eine cAMP-Erhöhung verbessert werden und erwies sich als partiell abhängig von PKA. Schlussendlich konnte nachgewiesen werden, dass cAMP in vitro wie in vivo über die Blockade der p38MAPK-Aktivierung protektiv wirkt.
Zusammenfassend konnte so ein neuer Einblick in die zelluläre Antwort von Keratinozyten auf Pemphigus-Autoantikörperbindung gewonnen werden. Dieser könnte auch im Hinblick auf die Entwicklung neuer therapeutischer Strategien bei Pemphigus vulgaris wichtig sein.
Cord blood hematopoietic stem cells (CB-HSCs) are an outstanding source for the treatment of a variety of malignant and non-malignant disorders. However, the low amount of cells collected per donor is often insufficient for treatment of adult patients. In order to make sufficient numbers of CB-HSCs available for adults, expansion is required. Different approaches were described for HSC expansion, however these approaches are impeded by the loss of engrafting potential during ex vivo culture. Little is known about the underlying molecular mechanisms. Epigenetic mechanisms play essential roles in controlling stem cell potential and fate decisions and epigenetic strategies are considered for HSC expansion. Therefore, this study aimed to characterize global and local epigenotypes during the expansion of human CB-CD34+, a well established CB progenitor cell type, to better understand the molecular mechanisms leading to the culture-associated loss of engrafting potential. Human CB-CD34+ cells were cultured using 2 different cytokine cocktails: the STF cocktail containing SCF, TPO, FGF-1 and the STFIA cocktail, which combines STF with Angiopoietin-like 5 (Angptl5) and Insulin-like growth factor-binding protein 2 (IGFBP2). The latter expands CB-HSCs ex vivo. Subsequently, the NOD-scid gamma (NSG) mouse model was used to study the engraftment potential of expanded cells. Engraftment potential achieved by fresh CB-CD34+ cells was maintained when CB-CD34+ cells were expanded under STFIA but not under STF conditions. To explore global chromatin changes in freshly isolated and expanded CB-CD34+ cells, levels of the activating H3K4me3 and the repressive H3K27me3 histone marks were determined by chromatin flow cytometry and Western blot analyses. For analysis of genome-wide chromatin changes following ex vivo expansion, transcriptome profiling by microarray and chromatin immunoprecipitation combined with deep sequencing (ChIP-seq) were performed. Additionally, local chromatin transitions were monitored by ChIP analyses on promoter regions of developmental and self-renewal factors. On a global level, freshly isolated CD34+ and CD34- cells differed in H3K4me3 and H3K27me3 levels. After 7 days of expansion, CD34+ and CD34- cells adopted similar levels of active and repressive marks. Expanding the cells without IGFBP2 and Angptl5 led to a higher global H3K27me3 level. ChIP-seq analyses revealed a cytokine cocktail-dependent redistribution of H3K27me3 profiles. Chemical inhibition of the H3K27 methyltransferase EZH2 counteracted the culture-associated loss of NSG engraftment potential. Collectively, the data presented in this study revealed that by adding epigeneticly active compounds in the culture media we observed changes on a chromatin level which counteracted the loss of engraftment potential. H3K27me3 rather than H3K4me3 may be critical to establish a specific engraftment supporting transcriptional program. Furthermore, I identified a critical function for the Polycomb repressive complex 2-component EZH2 in the loss of engraftment potential during the in vitro expansion of HPSCs. Taken together this thesis provides a better molecular understanding of chromatin changes upon expansion of CB-HSPCs and opens up new perspectives for epigenetic ex vivo expansion strategies.
Im Rahmen der Suche nach genetischen Korrelaten für die Suszeptibilität für Herzrhythmusstörungen wurde man auf die Genfamilie mit der sogenannten Popey-Domäne aufmerksam.
Ein Gen aus dieser Familie ist das Popdc2-Gen, welches für Transmembranproteine codiert, die möglicherweise eine Rolle in der Zell-Adhäsion und Zell-Interaktion spielen. Diese fanden sich sowohl in adulten Mäusen als auch im Reizleitungssystem des menschlichen Herzens in höherer Dichte. Eine systemische elektrophyiologische Charakterisierung der Podpc2-Nullmutanten erbrachte normale AV-Überleitungseigenschaften und Sinusknotenerholzeit. Im Vergleich zu den Wildtyp-Mäusen zeigten die transgenen Tiere eine erhöhte ektope Aktivität im Ventrikel nach Katecholamin-Stimulation(z.B. Kammerflimmern), sowie öfter Vorhofflimmern nach Burstmanövern.
Arrhythmien konnten signifikant häufiger bei Popdc2-Knockout-Mäusen > 9 Monaten nachgewiesen werden, dies könnte auf eine altersabhängige Alteration hindeuten. Möglicherweise spielt das Popdc2-Gen eine wichtige Rolle in der Pathogenese des plötzlichen Herztods durch ventrikuläre Arrhythmien.
SPRED proteins are inhibitors of the Ras/ERK/MAPK signaling pathway, an evolutionary highly conserved and very widespread signaling cascade regulating cell proliferation, differentiation, and growth. To elucidate physiological consequences of SPRED2 deficiency, SPRED2 KO mice were generated by a gene trap approach. An initial phenotypical characterization of KO mice aged up to five months identified SPRED2 as a regulator of chondrocyte differentiation and bone growth. Here, the loss of SPRED2 leads to an augmented FGFR-dependent ERK activity, which in turn causes hypochondroplasia-like dwarfism. However, long term observations of older KO mice revealed a generally bad state of health and manifold further symptoms, including excessive grooming associated with severe self-inflicted wounds, an abnormally high water uptake, clear morphological signs of kidney deterioration, and a reduced survival due to sudden death. Based on these observations, the aim of this study was to discover an elicitor of this complex and versatile phenotype.
The observed kidney degeneration in our SPRED2 KO mice was ascribed to hydronephrosis characterized by severe kidney atrophy and apoptosis of renal tubular cells. Kidney damage prompted us to analyze drinking behavior and routine serum parameters. Despite polydipsia, which was characterized by a nearly doubled daily water uptake, the significantly elevated Na+ and Cl- levels and the resulting serum hyperosmolality could not be compensated in SPRED2 KOs. Since salt and water balance is primarily under hormonal control of aldosterone and AVP, we analyzed both hormone levels. While serum AVP was similar in WTs and KOs, even after experimental water deprivation and an extreme loss of body fluid, serum aldosterone was doubled in SPRED2 KO mice. Systematic investigation of contributing upstream hormone axes demonstrated that hyperaldosteronism developed independently of an overactivated Renin-Angiotensin system as indicated by halved serum Ang II levels in KO mice. However, aldosterone synthase expression in the adrenal gland was substantially augmented. Serum corticosterone, which is like aldosterone released from the adrenal cortex, was more than doubled in SPRED2 KOs, too. Similar to corticosterone, the production of aldosterone is at least in part under control of pituitary ACTH, which is further regulated by upstream hypothalamic CRH release. In fact, stress hormone secretion from this complete hypothalamic-pituitary-adrenal axis was upregulated because serum ACTH, the mid acting pituitary hormone, and hypothalamic CRH, the upstream hormonal inductor of HPA axis activity, were also elevated by 30% in SPRED2 KO mice. This was accompanied by an upregulated ERK activity in paraventricular nucleus-containing hypothalamic brain regions and by augmented hypothalamic CRH mRNA levels in our SPRED2 KO mice. In vitro studies using the hypothalamic cell line mHypoE-44 further demonstrated that both SPRED1 and SPRED2 were able to downregulate CRH promoter activity, CRH secretion, and Ets factor-dependent CRH transcription. This was in line with the presence of various Ets factor binding sites in the CRH promoter region, especially for Ets1.
Thus, this study shows for the first time that SPRED2-dependent inhibition of Ras/ERK/MAPK signaling by suppression of ERK activity leads to a downregulation of Ets1 factor-dependent transcription, which further results in inhibition of CRH promoter activity, CRH transcription, and CRH release from the hypothalamus. The consecutive hyperactivity of the complete HPA axis in our SPRED2 KO mice reflects an elevated endogenous stress response becoming manifest by excessive grooming behavior and self-inflicted skin lesions on the one hand; on the other hand, in combination with elevated aldosterone synthase expression, this upregulated HPA hormone release explains hyperaldosteronism and the associated salt and water imbalances. Both hyperaldosteronism and polydipsia very likely contribute further to the observed kidney damage.
Taken together, this study initially demonstrates that SPRED2 is essential for the appropriate regulation of HPA axis activity and of body homeostasis.
To further enlighten and compare consequences of SPRED2 deficiency in mice and particularly in humans, two follow-up studies investigating SPRED2 function especially in heart and brain, and a genetic screen to identify human SPRED2 loss-of-function mutations are already in progress.
In this work, a novel method for estimating the relative pose of a known object is presented, which relies on an application-specific data fusion process. A PMD-sensor in conjunction with a CCD-sensor is used to perform the pose estimation. Furthermore, the work provides a method for extending the measurement range of the PMD sensor along with the necessary calibration methodology. Finally, extensive measurements on a very accurate Rendezvous and Docking testbed are made to evaluate the performance, what includes a detailed discussion of lighting conditions.
CD70-abhängige und spezifische Aktivierung von TRAILR1 oder TRAILR2 durch scFv:CD70-TRAIL-Mutanten
(2014)
Das Ziel dieser Arbeit bestand darin, den T-Zell-inhibierenden Effekt eines CD70-blockierenden Antikörpers mit einer Fc-unabhängigen Zelltod-induzierenden Aktivität auf CD70-exprimierende Tumoren zu kombinieren. Dazu wurden Fusionsproteine hergestellt und untersucht, die aus einer CD70-bindenden scFv-Domäne sowie aus einer TRAIL-Domäne bestehen.
Der CD70-spezifische monoklonale Antikörper lαhCD70 sowie der beretis bekannte hCD70-spezifische Antikörper 1F6 blockieren mit hoher Effizienz die CD27/CD70-Interaktion von CD70-exprimierenden Zelllinien (Mino, OVCAR-3, U-266) und inhibieren dadurch die Induktion der IL8-Produktion durch diese Zellen in kokultivierten HT1080-CD27-Zellen. IL8 wird durch den klassischen NFκB-Signalweg reguliert und ist für den pro-angiogenetischen Effekt von entscheidender Bedeutung (Abb. 2, 3). Mit Hilfe zellulärer Gleichgewichtsbindungsstudien mit mono- und trimeren scFv:lαhCD70-GpL-Fusionsproteinen (Abb. 4) auf Mino- und OVCAR-3-Zellen konnte gezeigt werden, dass die Trimerisierung in beiden Zelllinien zu einer Steigerung der apparenten Affinität der scFv:lαhCD70-CD70 Interaktion führt und damit einen Effekt auf die CD70-Belegung hat (Abb. 5). Für die Konstruktion der Fusionsproteine wurde sowohl Wildtyp-TRAIL als auch TRAIL-Mutanten mit Präferenz für den TRAILR1 oder TRAILR2 verwendet. Die TRAILR-Präferenz der verwendeten TRAIL-Mutanten (wt, mutR1, mutR2) wurde nicht nur in zellulären GpL-Bindungsstudien (Abb. 7) sondern zusätzlich auch in TRAILR Immobilisierungsexperimenten (Abb. 8) bewiesen. Hier zeigte sich, dass bei TRAILR1 keine Interaktion mit TRAILmutR2, so wie bei TRAILR2 keine signifikante Bindung mit TRAILmutR1 erfolgte. Nur der TRAIL-Wildtyp band signifikant an beide TRAIL-Todesrezeptoren. Vitalitätsexperimente (Abb. 10) und Western-Blot Analysen der Caspase-Prozessierung (Abb. 11) bestätigten die starke TRAILR1- bzw. TRAILR2-Spezifität der TRAILmutR1- und TRAILmutR2-Varianten. Im Gegensatz zu den unvernetzten löslichen TRAIL-Trimeren waren nur die
quervernetzten TRAIL-TNC-Varianten in der Lage, eine signifikante Apoptose-Signalkaskade bei relativ geringen Konzentrationen zu induzieren. Die toxischen ED50-Konzentrationen der unoligomerisierten TRAIL-Formen lagen um einen Faktor 100 höher als die der oligomerisierten Varianten. Zusammenfassend zeigten die ED50-Werte der Zytotoxizitätsexperimente von M2-oligomerisierten zu -unoligomerisierten trimeren TRAIL-Varianten bei allen Fusionskonstrukten und Zelllinien eine eindeutige Verstärkung der Apoptoseinduktion durch die M2-Quervernetzung. Bei Jurkat- und Mino-Zellen konnte größtenteils erst nach Oligomerisierung überhaupt eine Bioaktivität bzw. eine Zelltodinduktion beobachtet werden. In OVCAR-3-Zellen zeigte sich eine 100-1000 fache apoptotische Verstärkung durch die Oligomerisierung (Abb. 10). Weiterhin zeigten Zytotoxizitätsexperimente, dass sich durch Bindung an hCD70 das Ausmaß der Toxizität der Fusionsproteine auf allen CD70-exprimierenden Zelllinien 10-100x verstärkte (Abb. 15, 17). In Übereinstimmung mit der verstärkten TRAIL-Todesrezeptor-Aktivierung durch die CD70-Bindung der scFv-TRAIL-Fusionsproteine, konnte durch eine CD70-Blockade die Caspase-8 Aktivierung und die Prozessierung von Caspase-3 signifikant unterbunden werden (Abb. 18). Die Trimerisierung des scFv:lαhCD70-Antikörpers führte zu keiner Apoptose und beeinflußte auch nicht die Aktivität von TRAIL (Abb. 19) was belegt, dass die beobachteten Effekte auf einer stärkeren TRAIL-induzierten Apoptose nach CD70-Bindung der Konstrukte beruhen muss.
Die Fusionsproteine beseitigen somit nachweislich einerseits das Problem der limitierenden Aktivität von löslichem TRAIL über ihre Verankerung an CD70 (Abb. 15-20) und anderseits die potentielle unerwünschte CD70-vermittelte protumorale CD27-Stimulation (Abb. 3). Darüber hinaus könnten die TRAILR-spezifischen TRAIL-Mutanten helfen, Nebeneffekte zu reduzieren, die primär durch den jeweils anderen TRAIL-Todesrezeptor vermittelt werden. Jedoch sind weiter Forschungen insbesondere in vivo Experimente notwendig, um Aussagen über Funktionalität, Halbwertszeiten, sowie Effektivität und Verträglichkeit treffen zu können.
In this work, a model-based acceleration of parameter mapping (MAP) for the determination of the tissue parameter T1 using magnetic resonance imaging (MRI) is introduced. The iterative reconstruction uses prior knowledge about the relaxation behavior of the longitudinal magnetization after a suitable magnetization preparation to generate a series of fully sampled k-spaces from a strongly undersampled acquisition. A Fourier transform results in a spatially resolved time course of the longitudinal relaxation process, or equivalently, a spatially resolved map of the longitudinal relaxation time T1.
In its fastest implementation, the MAP algorithm enables the reconstruction of a T1 map from a radial gradient echo dataset acquired within only a few seconds after magnetization preparation, while the acquisition time of conventional T1 mapping techniques typically lies in the range of a few minutes. After validation of the MAP algorithm for two different types of magnetization preparation (saturation recovery & inversion recovery), the developed algorithm was applied in different areas of preclinical and clinical MRI and possible advantages and disadvantages were evaluated.