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- J-8841-2015 (1)
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In the experiments presented in this work, linear and non-linear femtosecond time-resolved spectrsocopy were applied to investigate the structure-function and functiondynamics relationship in biological and artificially designed systems. The experiments presented in this work utilize femtosecond time-resolved transient absorption and transient grating as well as picosecond time-resolved fluorescence spectroscopy to investigate the photophysics and photochemistry of biological photoreceptors and address the light-induced excited-state processes in a particular molecular device that serves as a - structurally - very simple light-harvesting antenna and potentially as a catalysis-switch for the production of hydrogen in solution. The combination of white-light probe transient absorption and coherent transient grating spectroscopies yields spectral information about the excited state absorption in concert with high quality, high signal-to-noise kinetic transients, which allow for precise fitting and therefore very accurate time-constants to be extracted from the data. The use of femtosecond time-resolved transient grating spectroscopy is relatively uncommon in addressing questions concerning the excited-state reaction pathways of complex (biological) systems, and therefore the experiments presented in this work constitute according to the literature the first studies applying this technique to a a metalloporphyrin and an artificial light-harvesting antenna.
Although spintronics has aroused increasing interest, much fundamental research has to be done. One important issue is the control over the electronic spin. Therefore, spin and phase coherent transport are very important phenomena. This thesis describes experiments with mercury based quantum well structures. This narrow gap material provides a very good template to study spin related effects. It exhibits large Zeeman spin splitting and Rashba spin-orbit splitting. The latter is at least four to five times larger than in III-V semiconductors. Initially a short review on the transport theory was presented. The main focus as on quantisation effects that are important to understand the related experiments. Thus, Shubnikov-de Haas and the quantum Hall effect have been analysed. Due to the first fabrication of nanostructures on Hg-based quantum well samples, the observation of ballistic transport effects could be expected. Hence, the Landauer-B¨uttiker theory has been introduced which gives the theoretical background to understand such effects. With respect to the main topic of this thesis, phase coherence has been introduced in detail. Experiments, where coherence effects could be observed, have been explained theoretically. Here, possible measurement setups have been discussed, e.g., a ring shaped structure to investigate the Aharonov-Bohm and related effects. Due to the fact, that all experiments, described in this thesis, were performed on Hg-based samples, the exceptional position of such samples among the “classical” semiconductors has been clarified. Hg1-xMnx Te quantum wells are type-III QWs in contrast to the type-I QWs formed by e.g., GaAs/AlGaAs heterostructures. With a well width of more than 6 nm and a manganese content of less than 7% they exhibit an inverted band alignment. Band structure calculations based on self consistent Hartree calculations have been presented. The common description of a diluted magnetic semiconductor with the Brillouin function has been introduced and the experiments to obtain the empiric parameters T0 and S0 have been presented. Rashba spin-orbit splitting and giant Zeeman splitting have been explained theoretically and the magnetic ordering of a spin glass as well as the relevant interactions therein have been discussed. The next chapter describes the first realisation of nanostructures on Hg-based heterostructures. Several material specific problems have been solved, but the unique features of this material system mentioned above justify the effort. Interesting new insight could be found and will be found with these structures. Onto a series of QW samples, cross-shaped structures with several lead widths have been patterned. With the non-local resistance measurement setup, evidence for quasiballistic transport was demonstrated in cross-shaped structures with lead widths down to 0.45 mm. The non-local bend resistance and a regime of rebound trajectories as well as the anomalous Hall effect could be identified. Monte-Carlo simulations of the classical electron trajectories have been performed. A good agreement with the experimental data has been achieved by taking a random scattering process into account. Encouraged by this success the technology has been improved and ring-shaped structures with radii down to 1 mm have been fabricated. Low temperature (below 100 mK), four terminal resistance measurements exhibit clear Aharonov-Bohm oscillations. The period of the oscillations agrees very well with a calculation that takes only the sample geometry into account. One goal using such a structure is the experimental prove of the spin-orbit Berry phase. Therefore an additional Shottky gate on top of the ring was needed. With this structure evidence for the Aharonov-Casher effect was observed. Here, a perpendicular applied electric field causes analogous oscillations as does the magnetic field in the AB effect. A subsequent change in the Rashba SO splitting due to several applied gate voltages while measuring the AB effect should reveal the SO Berry phase. Although initially evidence of a phase change was detected, a clear proof for the direct measurement of the SO Berry phase could not be found. In the future, with an advanced sample structure, e.g., with an additional Hall bar next to the ring, which permits a synchronous measurement of the Rashba splitting, it might be possible to measure the SO Berry phase directly. In manganese doped HgTe QWs two different effects simultaneously cause spin splitting: the giant Zeeman and the Rashba effect. By analysing the Shubnikovde Haas oscillations and the node positions of their beating pattern, it has been possible to separate these two effects. Whereas the Rashba effect can be identified by its dependence on the structure inversion asymmetry, varied by the applied gate voltage, the giant Zeeman splitting is extracted from its strong temperature dependence, because Rashba splitting is temperature independent. The analysis revealed, that the Rashba splitting is larger than or comparable to the giant Zeeman splitting even at moderately high magnetic fields. In an extraordinary HgMnTe QW sample, that exhibits the n= 1 quantum Hall plateau from less than 1 T up to 28 T, the anomalous Hall effect could be excluded. Intense studies on the temperature dependence of the QHE as well as band structure calculations have revealed this extraordinary behaviour to be an ordinary band structure effect of this system. In a series of mesoscopic structures on nonmagnetic and magnetic QWs, an investigation of the universal conductance uctuations have been carried out. In the
It has been known for a long time that Drosophila can learn to discriminate not only between different odorants but also between different concentrations of the same odor. Olfactory associative learning has been described as a pairing between odorant and electric shock and since then, most of the experiments conducted in this respect have largely neglected the dual properties of odors: quality and intensity. For odorant-coupled short-term memory, a biochemical model has been proposed that mainly relies on the known cAMP signaling pathway. Mushroom bodies (MB) have been shown to be necessary and sufficient for this type of memory, and the MB-model of odor learning and short-term memory was established. Yet, theoretically, based on the MB-model, flies should not be able to learn concentrations if trained to the lower of the two concentrations in the test. In this thesis, I investigate the role of concentration-dependent learning, establishment of a concentration-dependent memory and their correlation to the standard two-odor learning as described by the MB-model. In order to highlight the difference between learning of quality and learning of intensity of the same odor I have tried to characterize the nature of the stimulus that is actually learned by the flies, leading to the conclusion that during the training flies learn all possible cues that are presented at the time. The type of the following test seems to govern the usage of the information available. This revealed a distinction between what flies learned and what is actually measured. Furthermore, I have shown that learning of concentration is associative and that it is symmetrical between high and low concentrations. I have also shown how the subjective quality perception of an odor changes with changing intensity, suggesting that one odor can have more than one scent. There is no proof that flies perceive a range of concentrations of one odorant as one (odor) quality. Flies display a certain level of concentration invariance that is limited and related to the particular concentration. Learning of concentration is relevant only to a limited range of concentrations within the boundaries of concentration invariance. Moreover, under certain conditions, two chemically distinct odorants could smell sufficiently similarly such, that they can be generalized between each other like if they would be of the same quality. Therefore, the abilities of the fly to identify the difference in quality or in intensity of the stimuli need to be distinguished. The way how the stimulus is analyzed and processed speaks in favor of a concept postulating the existence of two separated memories. To follow this concept, I have proposed a new form of memory called odor intensity memory (OIM), characterized it and compared it to other olfactory memories. OIM is independent of some members of the known cAMP signaling pathway and very likely forms the rutabaga-independent component of the standard two-odor memory. The rutabaga-dependent odor memory requires qualitatively different olfactory stimuli. OIM is revealed within the limits of concentration invariance where the memory test gives only sub-optimal performance for the concentration differences but discrimination of odor quality is not possible at all. Based on the available experimental tools, OIM seems to require the mushroom bodies the same as odor-quality memory but its properties are different. Flies can memorize the quality of several odorants at a given time but a newly formed memory of one odor interferes with the OIM stored before. In addition, the OIM lasts only 1 to 3 hours - much shorter than the odor-quality memory.
Emery-Dreifuss muscular dystrophy (EDMD) is a rare genetic disorder characterised by early contractures of the elbows, Achilles tendons and spine, slowly progressive muscle wasting and cardiomyopathy associated with cardiac conduction defect. The autosomal dominant form is caused by mutations in the LMNA gene which gives rise to lamin A and lamin C proteins by alternative splicing. These A-type lamins, together with B-type lamins, form the nuclear lamina, a network of intermediate filament proteins underlining the nuclear envelope. In order to ascertain the role lamin A and C separately contribute to the molecular phenotype, we analysed ten LMNA mutations and one single nucleotide polymorphism (SNP) in transfection studies in COS7 fibroblasts and, partially, in C2C12 myoblasts. The EGFP or DsRed2 tagged lamins were exogenously expressed either individually or both A-types together and examined by light and electron microscopy. The protein mobility of lamin A mutants was determined by FRAP analysis. Additionally, a co-immunoprecipitation binding assay of in vitro synthesised A-type lamins and emerin was performed.Eight of the LMNA mutations (R50S, R133P, E358K, E358K+C<T1698, E361K, R527P, L530P, R541S and G602S) and the SNP C<T1698, when expressed in lamin A, exhibited a range of nuclear mis-localisation patterns from a wild type phenotype to the formation of nuclear aggregates. Two mutations (T150P and delQ355) led to the severe mis-localisation of the exogenous protein and additionally affected nuclear envelope reassembly and mid-body protein composition after mitosis. Exogenously expressed DsRed2 tagged wild type and mutant lamin C was only inserted into the nuclear lamina if co-expressed with the equivalent EGFP tagged lamin A construct, except for the T150P mutation which prevented either lamin from reaching the nuclear lamina. The T150P, R527P and L530P mutations reduced the ability of lamin A, but not lamin C from binding to emerin. These data indicate that mutations in the rod domain of lamin A mainly impair its function as a structural protein, whereas mutations of the globular tail domain appear to disrupt protein-protein interactions important for gene regulation and signal transduction processes. In addition, our results suggest specific functional roles for the emerin-lamin A and emerin-lamin C containing protein complexes; this is the first report to propose that the A-type lamin mutations may be differentially dysfunctional for the same LMNA mutation.
In this thesis, I introduce the Virtual Brain Protocol, which facilitates applications of the Standard Brain of Drosophila melanogaster. By providing reliable and extensible tools for the handling of neuroanatomical data, this protocol simplifies and organizes the recurring tasks involved in these applications. It is demonstrated that this protocol can also be used to generate average brains, i.e. to combine recordings of several brains with the same features such that the common features are emphasized. One of the most important steps of the Virtual Insect Protocol is the aligning of newly recorded data sets with the Standard Brain. After presenting methods commonly applied in a biological or medical context to align two different recordings, it is evaluated to what extent this alignment can be automated. To that end, existing Image Processing techniques are assessed. I demonstrate that these techniques do not satisfy the requirements needed to guarantee sensible alignments between two brains. Then, I analyze what needs to be taken into account in order to formulate an algorithm which satisfies the needs of the protocol. In the last chapter, I derive such an algorithm using methods from Information Theory, which bases the technique on a solid mathematical foundation. I show how Bayesian Inference can be applied to enhance the results further. It is demonstrated that this approach yields good results on very noisy images, detecting apparent boundaries between structures. The same approach can be extended to take additional knowledge into account, e.g. the relative position of the anatomical structures and their shape. It is shown how this extension can be utilized to segment a newly recorded brain automatically.
Diese Arbeit wurde durch Experimente zur Potential- und Stromverteilung in Quanten-Hall- Systemen motiviert, die in den letzten Jahren in der Abteilung von Klitzing am MPI für Festkörperforschung durchgeführt wurden und ergaben, dass elektrostatische Abschirmungseffekte in zweidimensionalen Elektronensystemen (2DES), die den ganzzahligen Quanten-Hall-Effekt (QHE) zeigen, sehr wichtig für das Verständnis der Stromverteilung innerhalb der Probe und der extremen Genauigkeit der gemessenen quantisierten Werte des Hall-Widerstands sind. Daraus ergab sich für die hier vorgelegte Arbeit das folgende Programm. Zunächst wird, nach einem einleitenden Kapitel, in Kapitel 2 der Formalismus vorgestellt, mit dem in den späteren Kapiteln Elektronendichten und elektrostatische Potentiale, die z.B. das 2DES auf eine Probe mit Streifengeometrie eingrenzen, selbstkonsistent berechnet werden. Diese Selbstkonsistenz besteht aus zwei Teilen. Erstens wird, bei vorgegebenem Potential, die Elektronendichte berechnet. Zweitens wird aus vorgegebener Ladungsverteilung, bestehend aus (positiven) Hintergrundladungen und der (im ersten Schritt berechneten) Elektronenladungsdichte, und geeigneten Randbedingungen (konstantes Potential auf metallischen Gates) durch Lösen der Poisson-Gleichung das elektrostatische Potential berechnet. Wenn wir im ersten Schritt, unter Berücksichtigung der Fermi-Dirac-Statistik, die Elektronendichte quantenmechanisch aus den Energieeigenfunktionen und -werten berechnen, erhalten wir die Hartree-Näherung, die die Dichte als nichtlokales Funktional des Potentials liefert. Wenn man die Ausdehnung der Wellenfunktionen auf der Längenskala, auf der sich das Potential typischerweise ändert, vernachlässigen kann, so vereinfacht sich die Hartree-Näherung zur Thomas- Fermi-Näherung, die einen lokalen Zusammenhang zwischen Elektronendichte und Potential beschreibt. Die meisten der konkreten Rechnungen wurden im Rahmen dieser selbstkonsistenten Thomas-Fermi-Poisson-Näherung durchgeführt. Im Kapitel 3 wird allgemein das Abschirmverhalten eines 2DES im hohen Magnetfeld untersucht. Wir betrachten die Antwort auf eine harmonische Potentialmodulation im unbegrenzten 2DES und in streifenförmig begrenzten Systemen mit zwei unterschiedlichen Arten von Randbedingungen. Bei tiefen Temperaturen und hohen Magnetfeldern finden wir extrem nichtlineare Abschirmung. Im unbegrenzten 2DES charakterisieren wir die Abschirmung, indem wir die gesamte Variation des selbstkonsistent berechneten Potentials als Funktion der Amplitude des aufgeprägten cosinus-Potentials berechnen. Bei festem Magnetfeld ergeben sich so Stufenfunktionen, deren Gestalt stark vom Füllfaktor der Landau-Niveaus im homogenen Zustand ohne aufgeprägtes Potential abhängt (siehe Abbildungen 3.2- 3.6). Vielleicht noch unerwartetere Kurven ergeben sich, wenn man bei festem Modulationspotential die Varianz des selbstkonsistenten Potentials gegen das Magnetfeld B aufträgt (Abb. 3.9). Die Resultate lassen sich aber leicht verstehen und (bei Temperatur T = 0) in einem einfachen Schema (Abb. 3.7) zusammenfassen. Als ordnendes Prinzip stellt sich heraus, dass sich stets Zustände einstellen, in denen die Elektronendichte möglichst wenig von der bei verschwindendem Magnetfeld abweicht. Wenn die Zyklotronenergie groß gegen die thermische Energie kBT ist, erfordert das, dass in den großen Bereichen, in denen die Dichte variiert, ein Landau-Niveau unmittelbar an dem, im Gleichgewicht konstanten, elektrochemischen Potential liegen muss (En, “pinning”). Man nennt diese Bereiche kompressibel. In den kompressiblen Bereichen können Elektronen leicht umverteilt werden, d.h. die Dichte ist leicht veränderbar und in diesen Bereichen gibt es extrem effektive Abschirmung. Existieren kompressible Bereiche mit unterschiedlichen Landau-Niveaus (En) am elektrochemischen Potential, z.B. bei großer Modulation oder weil die Dichte zum Probenrand hin abnimmt, so gibt es zwischen benachbarten kompressiblen Bereichen mit unterschiedlichen Landau-Quantenzahlen n “inkompressible” Bereiche, in denen zwischen zwei Landau-Niveaus liegt. Dort sind alle Landau-Niveaus unterhalb von besetzt, die oberhalb leer. Folglich ist dort der Füllfaktor ganzzahlig und die Dichte konstant. Das Wechselspiel zwischen kompressiblen und inkompressiblen Bereichen bestimmt das Abschirmverhalten. Randeffekte erweisen sich nur in solchen Magnetfeldintervallen als wichtig für die Abschirmung im Inneren einer streifenförmigen Probe, in denen (schon ohne aufgeprägte Modulation) in der Probenmitte ein neuer inkompressibler Streifen entsteht. Im Kapitel 4 wird die Rolle der inkompressiblen Streifen in einer idealisierten, streifenförmigen Hall-Probe untersucht. Mithilfe einer lokalen Version des Ohmschen Gesetzes berechnen wir bei vorgegebenen Gesamtstrom die Stromdichte und das nun ortsabhängige elektrochemische Potential, dessen Gradient die Stromdichte treibt. Für den lokalen Leitfähigkeitstensor nehmen wir ein für homogenes 2DES berechnetes Resultat und ersetzen den Füllfaktor jeweils durch den lokalen Wert. Dadurch ergibt sich, dass bei Existenz inkompressibler Streifen der gesamte Strom auf diese Streifen eingeschränkt ist, in denen die Komponenten des spezifischen Widerstands die Werte des freien, idealen 2DES haben, also verschwindenden longitudinalen und quantisierten Hall-Widerstand. Aus Hartree-Rechnungen zeigen wir, dass es inkompressible Streifen nur in Magnetfeldintervallen endlicher Breite (um ganzzahlige Füllfaktoren) gibt und dass in der Nähe von Füllfaktor 4 es nur inkompressible Streifen mit dem lokalen Füll-faktor \nu(x) = 4 gibt, aber nicht solche mit \nu(x) = 2, in Gegensatz zu dem Ergebnis der Thomas-Fermi-Poisson-Näherung, die hier nicht gültig ist. Um diese Unzulänglichkeit der Thomas-Fermi-Poisson-Näherung und Artefakte des strikt lokalen Modells zu beheben, führen wir die Rechnungen mit einem (auf der Skala des mittleren Elektronenabstands) gemittelten Leitfähigkeitstensors aus. Damit erhalten wir, im Rahmen einer Linear-Response-Rechnung, sehr schöne Übereinstimmung mit den Potentialmessungen, die diese Dissertation motivierten, einen kausalen Zusammenhang zwischen der Existenz inkompressibler Streifen und der Existenz von Plateaus im QHE, und ein Verständnis der extremen Genauigkeit, mit der die quantisierten Widerstandswerte reproduziert werden können, unabhängig von Probenmaterial und -geometrie. Im Kapitel 5 untersuchen wir das Zufallspotential, in dem sich die Elektronen bewegen. Wir gehen davon aus, dass sich hinter einer undotierten Schicht eine Ebene mit zufällig verteilten ionisierten Donatoren befindet, deren Coulomb-Potentiale sich zu dem Zufallspotential überlagern. Wir weisen darauf hin, dass sich die langreichweitigen Fluktuationen dieses Potentials anders verhalten als die kurzreichweitigen. Die kurzreichweitigen klingen mit dem Abstand der Donatorebene von der Ebene des 2DES exponentiell ab, werden aber (bei B = 0) nur schwach durch das 2DES abgeschirmt. Diese Fluktuationen haben wir durch die endlichen Leitfähigkeiten und die Stoßverbreiterung der Landau-Niveaus berücksichtigt. Die langreichweitigen Fluktuationen, andererseits, sind nur schwach von der Entfernung der Donatorebene abhängig, werden aber stark vom 2DES abgeschirmt. Diese sollte man bei der selbstkonsistenten Abschirmungsrechnung explizit berücksichtigen. Erste Versuche in dieser Richtung zeigen, dass sie die Quanten-Hall-Plateaus verbreitern, verschieben und stabilisieren können. Sie sollten besonders bei breiten Proben wichtig werden, bei denen sie zusätzliche inkompressible Streifen im Probeninneren verursachen können. Schließlich diskutieren wir in Kapitel 6 Abschirmungseffekte in einem Doppelschichtsystem aus zwei parallelen 2DES. Interessante neue Effekte treten auf, wenn die Schichten verschiedene Dichten haben. Das Auftreten inkompressibler Streifen in der einen Schicht kann dann drastische Auswirkungen auf die andere Schicht haben. Widerstandsmessungen in Abhängigkeit vom Magnetfeld, die kürzlich an solchen Systemen durchgeführt wurden, zeigen, dass am Rande eines QH-Plateaus Hysterese auftritt, d.h. dass die für ansteigendes Magnetfeld gemessene Kurve nicht mit der für abfallendes Magnetfeld gemessenen Kurve übereinstimmt, wenn dieser Magnetfeldbereich in ein QH-Plateau der anderen Schicht fällt. Wir entwickeln ein Modell und beschreiben Modellrechnungen, die dieses Phänomen plausibel machen.
This thesis contributes to the field of silicon chemistry, with a special emphasis on the chemistry of penta- and hexacoordinate silicon.The spirocyclic zwitterionic Lambda5Si-silicates 1–6 with a (2,2,6,6-tetramethylpiperidinio)- methyl group and two identical bidentate chelate ligands derived from glycine, (S)-alanine, (S)-phenylalanine, (S)-valine, (S)-tert-leucine, or (S)-proline bound to the silicon(IV) coordination center were synthesized and structurally characterized for the first time.The hitherto unknown spirocyclic zwitterionic Lambda5Si-silicates 7–12 with an (ammonio)- methyl group and two identical bidentate chelate ligands derived from (S)-lactic acid, (S)-3- phenyllactic acid, or (S)-mandelic acid were synthesized and structurally characterized in the solid state (elemental analyses (C, H, N), crystal structure analyses, 15N and 29Si VACP/MAS solid-state NMR experiments) and in solution (except 10; 1H, 13C, and 29Si NMR experiments)The spirocyclic zwitterionic Lambda5Si-silicates 13, 15, and 16 with an (ammonio)methyl group and two bidentate meso-oxolane-3,4-diolato(2–) ligands bound to the silicon(IV) coordination center were synthesized for the first time. The already existent compound 14 was resynthesized in order to perform a crystal structure analysis. All compounds were characterized by elemental analyses (C, H, N), 29Si VACP/MAS solid-state NMR experiments, and solution NMR studies (1H, 13C, 15N, and 29Si NMR experiments), and compounds 14–16 were additionally studied by single-crystal X-ray diffraction.The already existent zwitterionic Lambda5Si-silicate 17 was synthesized by new methods, including a remarkable Si–C cleavage reaction with benzoin. To investigate the dynamic behavior of the known zwitterionic Lambda5Si-silicate 18 in solution, VT 1H NMR experiments in CD2Cl2 were performed in the temperature range –100 °C to 23 °C.The hexacoordinate silicon compounds 19–22 containing multidentate ligands derived from citric acid or (S)-malic acid were synthesized for the first time. The anionic Lambda6Si-silicates 19–22 were structurally characterized in the solid state by single-crystal X-ray diffraction and VACP/MAS NMR spectroscopy (13C, 15N, 29Si). Upon dissolution in water at 20 °C, spontaneous hydrolysis of the Lambda6Si-silicate anions was observed.
The plant cuticle as an interface between the plant interior and the adjoining atmosphere plays an important role in any interaction between the plant and its environment. Transport processes across the cuticles were the object of countless research since many decades. However, bulk of the work done was focused on transport of lipophilic molecules. It is highly plausible to examine the penetration of lipophilic compounds, since the cuticle is dominated by lipophilic compartments itself, and the most crop protection agents have lipophilic character. As a result of this research, cuticular transport of lipophilic compounds is relatively well understood. Since several years, examinations were expanded on transport of hydrophilic molecules. In the present study, a direct comparison was made between transport properties of lipophilic and hydrophilic compounds, which allows an objective assessment of the mechanism governing their penetration. The results of this present study debunked the existence of two different pathways across isolated cuticles of Hedera helix (English ivy), a lipophilic and a hydrophilic pathway. This finding was supported by examinations regarding to accelerator and temperature effects on the mobility of both pathways, because the hydrophilic path is insensitive to them - in contrary to the lipophilic one. The lipophilic pathway is rigorously restricted to lipophilic molecules and the hydrophilic pathway is only accessible for hydrophilic molecules. Uncharged hydrophilic compounds can cross the cuticle even the molecules are of relatively large dimensions. In contrast to that, dissociable compounds with a molar volume higher than 110 cm³ mol-1 are excluded from cuticular penetration. Differences in the mobility of uncharged and dissociable molecules might be a hint towards the chemical nature of the polar pathways. It is assumed, that both, cellulose and pectin fibrils, traverse the cuticle which are originated from the epidermal cell wall. While uncharged carbohydrates might be able to penetrate across a pathway made up of cellulose and pectin, dissociated amino acids might be restricted to the cellulose path. This could be a plausible explanation for the higher mobility and the higher cuticle/water partition coefficients of the carbohydrates compared with the amino acids. A hydrophilic pathway was found with isolated grapevine cuticles, too. The apparent size selectivity of the hydrophilic pathway implies transport via narrow pores. From the present data, a mean pore radius of 0.31 nm (H. helix) or rather 0.34 nm (V. vinifera) was calculated. The absolute number of pores per cm² is 1.1 x 109 for H. helix and 3.3 x 109 for V. vinifera cuticles. This finding and the enlarged pore size distribution of grapevine cuticles might be an explanation for the transport of uncharged and dissociable hydrophilic compounds of higher molar volume like paraquat dichloride - in contrast to ivy membranes Wax extraction of ivy membranes uncovers additional pores, which explains the increased mobilities of the hydrophilic compounds across dewaxed membranes. From these extensive measurements it is very conspicuous, that the bulk of cuticular water transpiration occurs via the polar pathway. Since the work was focused on cuticular penetration of primary metabolites like amino acids and carbohydrates, a mechanistic explanation of leaching processes is obtained, simultaneously. In cuticular research, an inconsistent terminology regarding the transport path of the hydrophilic compounds was used. The term ‘hydrophilic pathway’ is definitely correct, since it makes no statement with regard to the shape of this path. In contrast to that, the terms ‘polar pore’ or ‘aqueous pore’ could imply that there is a tube or rather a water-filled tube traversing the cuticle. However - at this point of time – the imagination about the shape of this path is a pathway across interfibrilar gaps within polysaccharide strains. The proposed diameter of these interfibrilar gaps fits very well to the diameter determined in this study. Therefore, the imagination of a pore is not unfounded, but it is a very narrow pore, definitely. Additionally, this pathway is a very straight pathway which corresponds to this simplified imagination. An expanded study was done with paraquat dichloride, which was applied as aqueous droplets on grapevine cuticles. It is assumed that these model membranes reflect transport properties which are very close to that of relevant crops and weeds. The predominating parameter for paraquat penetration is the moisture, either originated from a relative humidity of at least 75% or provided by added chemicals. There is a tendency for good suitability of hygroscopic additives. Increased paraquat penetration was also obtained by raised concentrations and removal of the cuticular waxes.
Wireless communication is nothing new. The first data transmissions based on electromagnetic waves have been successfully performed at the end of the 19th century. However, it took almost another century until the technology was ripe for mass market. The first mobile communication systems based on the transmission of digital data were introduced in the late 1980s. Within just a couple of years they have caused a revolution in the way people communicate. The number of cellular phones started to outnumber the fixed telephone lines in many countries and is still rising. New technologies in 3G systems, such as UMTS, allow higher data rates and support various kinds of multimedia services. Nevertheless, the end of the road in wireless communication is far from being reached. In the near future, the Internet and cellular phone systems are expected to be integrated to a new form of wireless system. Bandwidth requirements for a rich set of wireless services, e.g.\ video telephony, video streaming, online gaming, will be easily met. The transmission of voice data will just be another IP based service. On the other hand, building such a system is by far not an easy task. The problems in the development of the UMTS system showed the high complexity of wireless systems with support for bandwidth-hungry, IP-based services. But the technological challenges are just one difficulty. Telecommunication systems are planned on a world-wide basis, such that standard bodies, governments, institutions, hardware vendors, and service providers have to find agreements and compromises on a number of different topics. In this work, we provide the reader with a discussion of many of the topics involved in the planning of a Wireless LAN system that is capable of being integrated into the 4th generation mobile networks (4G) that is being discussed nowadays. Therefore, it has to be able to cope with interactive voice and video traffic while still offering high data rates for best effort traffic. Let us assume a scenario where a huge office complex is completely covered with Wireless LAN access points. Different antenna systems are applied in order to reduce the number of access points that are needed on the one hand, while optimizing the coverage on the other. No additional infrastructure is implemented. Our goal is to evaluate whether the Wireless LAN technology is capable of dealing with the various demands of such a scenario. First, each single access point has to be capable of supporting best-effort and Quality of Service (QoS) demanding applications simultaneously. The IT infrastructure in our scenario consists solely of Wireless LAN, such that it has to allow users surfing the Web, while others are involved in voice calls or video conferences. Then, there is the problem of overlapping cells. Users attached to one access point produce interference for others. However, the QoS support has to be maintained, which is not an easy task. Finally, there are nomadic users, which roam from one Wireless LAN cell to another even during a voice call. There are mechanisms in the standard that allow for mobility, but their capabilities for QoS support are yet to be studied. This shows the large number of unresolved issues when it comes to Wireless LAN in the context of 4G networks. In this work we want to tackle some of the problems.
Chemical neurotransmission is a complex process of central importance for nervous system function. It is thought to be mediated by the orchestration of hundreds of proteins for its successful execution. Several synaptic proteins have been shown to be relevant for neurotransmission and many of them are highly conserved during evolution- suggesting a universal mechanism for neurotransmission. This process has checkpoints at various places like, neurotransmitter uptake into the vesicles, relocation of the vesicles to the vicinity of calcium channels in order to facilitate Ca2+ induced release thereby modulating the fusion probability, formation of a fusion pore to release the neurotransmitter and finally reuptake of the vesicles by endocytosis. Each of these checkpoints has now become a special area of study and maintains its own importance for the understanding of the overall process. Ca2+ induced release occurs at specialized membrane structures at the synapse known as the active zones. These are highly ordered electron dense grids and are composed of several proteins which assist the synaptic vesicles in relocating in the vicinity of Ca2+ channels thereby increasing their fusion probability and then bringing about the vesicular fusion itself. All the protein modules needed for these processes are thought to be held in tight arrays at the active zones, and the functions of a few have been characterized so far at the vertebrate active zones. Our group is primarily interested in characterizing the molecular architecture of the Drosophila synapse. Due to its powerful genetics and well-established behavioural assays Drosophila is an excellent system to investigate neuronal functioning. Monoclonal antibodies (MABs) from a hybridoma library against Drosophila brain are routinely used to detect novel proteins in the brain in a reverse genetic approach. Upon identification of the protein its encoding genetic locus is characterized and a detailed investigation of its function is initiated. This approach has been particularly useful to detect synaptic proteins, which may go undetected in a forward genetic approach due to lack of an observable phenotype. Proteins like CSP, Synapsin and Sap47 have been identified and characterized using this approach so far. MAB nc82 has been one of the shortlisted antibodies from the same library and is widely used as a general neuropil marker due to the relative transparency of immunohistochemical whole mount staining obtained with this antibody. A careful observation of double stainings at the larval neuromuscular junctions with MAB nc82 and other pre and post-synaptic markers strongly suggested an active zone localization of the nc82 antigen. Synaptic architecture is well characterized in Drosophila at the ultrastructural level. However, molecular details for many synaptic components and especially for the active zone are almost entirely unknown. A possible localization at the active zone for the nc82 antigen served as the motivation to initiate its biochemical characterization and the identification of the encoding gene. In the present thesis it is shown by 2-D gel analysis and mass spectrometry that the nc82 antigen is a novel active zone protein encoded by a complex genetic locus on chromosome 2R. By RT-PCR exons from three open reading frames previously annotated as separate genes are demonstrated to give rise to a transcript of at least 5.5 kb. Northern blots produce a prominent signal of 11 kb and a weak signal of 2 kb. The protein encoded by the 5.5 kb transcript is highly conserved amongst insects and has at its N-terminus significant homology to the previously described vertebrate active zone protein ELKS/ERC/CAST. Bioinformatic analysis predicts coiled-coil domains spread all over the sequence and strongly suggest a function involved in organizing or maintaining the structure of the active zone. The large C-terminal region is highly conserved amongst the insects but has no clear homologues in veretebrates. For a functional analysis of this protein transgenic flies expressing RNAi constructs under the control of the Gal4 regulated enhancer UAS were kindly provided by the collaborating group of S.Sigrist (Gِttingen). A strong pan-neuronal knockdown of the nc82 antigen by transgenic RNAi expression leads to embryonic lethality. A relatively weaker RNAi expression results in behavioural deficits in adult flies including unstable flight and impaired walking behavior. Due to this peculiar phenotype as observed in the first knockdown studies the gene was named “bruchpilot” (brp) encoding the protein “Bruchpilot (BRP)” (German for crash pilot). A pan-neuronal as well as retina specific downregulation of this protein results in loss of ON and OFF transients in ERG recordings indicating dysfunctional synapses. Retina specific downregulation also shows severely impaired optomotor behaviour. Finally, at an ultrastructural level BRP downregulation seems to impair the formation of the characteristic T-shaped synaptic ribbons at the active zones without significantly altering the overall synaptic architecture (in collaboration with E.Asan). Vertebrate active zone protein Bassoon is known to be involved in attaching the synaptic ribbons to the active zones as an adapter between active zone proteins RIBEYE and ERC/CAST. A mutation in Bassoon results in a floating synaptic ribbon phenotype. No protein homologous to Bassoon has been observed in Drosophila. BRP downregulation also results in absence of attached synaptic ribbons at the active zones. This invites the speculation of an adapter like function for BRP in Drosophila. However, while Bassoon mutant mice are viable, BRP deficit in addition to the structural phenotype also results in severe behavioural and physiological anomalies and even stronger downregulation causes embryonic lethality. This therefore suggests an additional and even more important role for BRP in development and normal functioning of synapses in Drosophila and also in other insects. However, how BRP regulates synaptic transmission and which other proteins are involved in this BRP dependant pathway remains to be investigated. Such studies certainly will attract prominent attention in the future.
The development of ethanol tolerance is due to changes in synaptic plasticity. Since the mechanisms mediating synaptic plasticity are probably defective in the mutant hangAE10, it was a goal of the present study to find out how HANG contributes to synaptic plasticity. In particular, it was important to clarify in which neuronal process HANG plays a role. Antibody stainings against HANG revealed that the protein is localized in all neuronal nuclei of larval and adult brains; the staining is absent in hangAE10, thus confirming that this P-element insertion stock is a protein null for HANG. Detailed analysis of the subnuclear distribution of HANG showed that HANG immunoreactivity is enriched at distinct spots in the nucleus in a speckled pattern; these speckles are found at the inside of the nuclear membrane and do not colocalize with chromatin nor with the nucleolus; thus, HANG is probably involved in the stabilization, processing or export of RNAs. As synaptic plasticity can be studied in single neurons at the larval neuromuscular junction, the morphology of the synaptic terminals of hangAE10 mutants was analyzed at muscle 6/7, segment A4. These studies revealed that hangAE10 mutants display a 40 % increase in bouton number and axonal branch length; in addition, some boutons have an abnormal hourglass-like shape, suggesting that they are arrested in a semi-separated state following the initiation of bouton division. The increase in bouton number of hang mutants is mainly due to an increase in numbers of type Ib boutons. The analysis of the distribution of several synaptic markers in hang mutants did not show abnormalities. The presynaptic expression of HANG in hang mutants rescues the increase in bouton number and axonal branch length, thus proving that the phenotypes seen in the P-element insertion hangAE10 are attributable to the lack of HANG rather than to effects of the P-element marker rosy or to a secondary hit on the same chromsome during mutagensis. This finding is further supported by the fact that postsynaptic expression of HANG does not rescue the abnormal NMJ morphology of hangAE10. Alterations in cAMP levels regulate the number of boutons; since hang mutants display an increase in bouton number, the questions was whether this morphological abnormality was due to defects in cAMP signalling. To test this hypothesis, hangAE10 NMJs were compared to those of the hypomorphic allele dnc1 that has a defective cAMP cascade. Some aspects of the NMJ phenotype (e.g. the increase in bouton number and the unaltered ratio of active zones per bouton area) are similar in hangAE10 and dnc1, other differ. Expression of a UAS-dnc transgene in hangAE10 mutants does not modify the phenotype. In summary, the results of this study indicate that nuclear protein HANG might be involved in isoform-specific splicing of genes required for synaptic plasticity at the NMJ.
The present research is concerned with the topic of socially induced affect. In previous research the focus was mainly on affective convergence. A prominent topic in that context was “emotional contagion” (Hatfield, Cacioppo, & Rapson, 1994). Affective divergence has been also been found. However, its influence on the theoretical debate remained weak. Besides research on emotions also social comparison research attended to the topic. In order to explain affective divergence and convergence an integrative model based on social comparison processes is proposed here. Based on the selective accessibility model (Mussweiler, 2003) it is assumed that affective convergence can be seen as assimilation to a comparison standard (the observed model). Therefore, the basic assumption is that a comparison between an observer and the model takes place. Affective divergence corresponds to an affective contrast from that standard. Which of these two phenomena occurs depends on the type of comparison processes that took place. Six experiments were conducted. In Experiment 1 it was shown that comparisons intensify the social induction of affect. The influence of the comparison focus was studied in Experiments 2 and 3. If the perceiver searches for similarities between the self and the model, affective convergence occurs. If differences are searched for, affective divergence is found. The latter is mainly found under special circumstances, e.g. if the model belongs to another social group (Experiment 3). In Experiment 1-3 it was shown comparisons influence the social induction of affect. In Experiment 4-6 the underlying processes were explored. The selective accessibility model (Mussweiler, 2003) attributes a central role to the selective activation of self-knowledge in order to explain judgmental assimilation and contrast. In Experiments 4 and 5 the role of the self was explored more thoroughly. Evidence for socially induced affect (affective convergence) has only been found when the self has been previously activated. When the self was not activated no such effect was found. The assumption that the activation of specific self-knowledge is the basis for socially induced affect was tested in Experiment 5. Results supported the assumption. The present experiments give rise to the assumption that social comparisons are a key element in the social induction of affect. Affective convergence and divergence are explained and processes for the affect induction are defined. The findings also have implications for research on automatic behaviour and especially to explain automatic contrast. In addition implications for social comparison research can be derived.
The development of free floating exchange rates can hardly be explained by macroeconomic fundamentals as supposed by traditional economic theories. Therefore, prominent economists yet conclude that there exists an ‘exchange rate disconnect puzzle’ (see Obstfeld and Rogoff [2000]). The observable exchange rate trends are often attributed to an excessive speculative trading behavior of foreign exchange market participants. In this study we deal with psychological factors, which may be important for understanding the observable exchange rate movements. Thus, our study belongs to the new research field of behavioral economics, which considers the relevance of psychological factors in economic contexts. The main objective of behavioral economists is to develop a more realistic view of the actual human behavior in the context of economics. Therefore, behavioral economists often refer to the work of behavioral decision theorists, who introduced new concepts under the general heading of bounded rationality. Central to the concept of bounded rationality is the assumption that humans’ actual behavior deviates from the ideal of economic rationality due to at least two reasons: first, decisions are usually based on an incomplete information basis (limited information) and, second, the information processing of human beings is limited by their computational capacities (limited cognitive resources). Due to these limitations people are forced to apply simplification mechanisms in information processing. Important simplification mechanisms, which play a decisive role in the process judgment and decision making, are simple heuristics. Simple heuristics can principally be characterized as simple rules of thumb, which allow quick and efficient decisions even under a high degree of uncertainty. In this study, our aim is to analyze the relevance of simple heuristics in the context of foreign exchange markets. In our view, the decision situation in foreign exchange markets can serve as a prime example for decision situations in which simple heuristics are especially relevant as the complexity of the decision situation is very high. The study is organized as follows. In Chapter II, we deal with the exchange rate disconnect puzzle. In particular, we discuss and check the main implications of the traditional economic approach for explaining exchange rate movements. The asset market theory of exchange rate determination implies that exchange rates are mainly driven by the development of macroeconomic fundamentals. Furthermore the asset market theory assumes that foreign exchange market participants form rational expectations concerning future exchange rate developments and that exchange rates are determined in efficient markets. Overall the empirical evidence suggests that the traditional approach for explaining exchange rate changes is at odds with the data. Chapter III addresses the existence of long and persistent trends in exchange rate time series. Overall, our empirical analysis reveals that exchange rates show a clear tendency to move in long and persistent trends. Furthermore, we discuss the relevance of speculation in foreign exchange markets. With regard to the impact of speculation, economic theory states that speculation can have either a stabilizing effect or a destabilizing effect on exchange rates. At the end of Chapter III, we examine the Keynesian view on the functioning of asset markets. In Chapter IV we explore the main insights from the new research field of behavioral economics. A main building block of behavioral economics is the concept of bounded rationality first introduced by Herbert Simon [1955]. In the centre of the concept of bounded rationality is a psychological analysis of the actual human judgment and decision behavior. In Chapter IV, we discuss the concept of bounded rationality in detail and illustrate important insights of behavioral decision theories. In particular, we deal with the relevance of simple heuristics in the context of foreign exchange markets. Chapter V provides experimental and empirical evidence for the suggested relevance of simple heuristics in foreign exchange markets. In the first experiment, we deal with the human expectation formation. We compare point forecasts of the EUR/USD exchange rate surveyed from professional analysts and experimentally generated point forecasts of students for a simulated exchange rate time series. The results show that the forecasting performance of both groups differs substantially. Afterwards we analyze the nature of expectation formation of both groups in detail to reveal similarities and differences, which allow us to draw reasonable explanations for the differences in the forecasting performances. In the second experiment, we analyze the expectation formation in an experimental foreign exchange market. This approach allows us to consider the relevance of expectation feedback as individuals’ expectations directly influence the actual realization of the time series. Thus, Keynes’ predictions on the importance of conventions in asset markets can be analyzed. Overall, both experiments reveal that the human beings tend to apply simple trend heuristics, when forming their expectations about future exchange rates. In the empirical part of Chapter V we deal with the usefulness of such simple trend heuristics in real world. Only if simple trend heuristics lead to profits in the specific environment of foreign exchange markets, their application can be recommended. Thus, we analyze the profitability of simple technical analysis tools in foreign exchange markets. Finally, Chapter VI provides concluding remarks.
Because of growth and development, plant tissues are characterised by a permanent change in source-sink relations. Tissues with a net carbohydrate export (source) or import (sink) have to adopt their actual demand for assimilates according to the developmental status. Furthermore, plants, as sessile life forms, have developed regulatory mechanisms that enable a flexible response of assimilate partitioning to specific requirements of the habitat, like biotic and abiotic stress factors and changing light conditions. The distribution of assimilates involves specific enzyme functions including sugar transporters and sucrose cleaving enzymes and is regulated by a variety of stimuli. Extracellular invertases cover an essential function in apoplastic phloem unloading and play an important role in regulating source-sink relations. This property is reflected by the occurrence of different invertase isoenzymes with specific expression and regulation patterns that enable a co-ordination of the carbohydrate metabolism in diverse tissues, at different developmental stages, and under varying environmental conditions. Improved knowledge of extracellular invertase function might allow altering growth, development or pathogen resistance of crop plants in a specific way. The present study is aimed at elucidating the regulation patterns and functions of three members of the extracellular invertase gene family of tomato, Lin5, Lin6, and Lin7. Detailed promoter analysis revealed a tissue- and developmental-specific expression of isoenzymes and corresponding regulation patterns. Lin5 shows a developmental regulated expression in fruits. Lin6 is expressed in early developmental stages starting in germinating seeds; in grown up plants Lin6 is solely expressed in pollen and upon wound-stimulation. Lin7 is exclusively expressed in tapetum and pollen tissue. The hormonal regulation of all three isogenes was analysed in detail, whereby known GA- and JA-mediated flower phenotypes could be correlated with invertase functions. In addition, an important role of Lin7 invertase in pollen germination was demonstrated in a functional approach. This is the most profound analysis of extracellular invertases in the delicate process of floral organ development that includes three tomato isoenzymes. In particular, dissection of the individual roles of Lin5, Lin6, and Lin7 reveals novel insights in carbohydrate supply during flower and fruit development. The analysed tissue-specific promoters are profitable tools in plant biotechnology, which in particular applies to the pollen-specific Lin7 promoter. It has been demonstrated that the Lin6 promoter serves as target for hormonal-, sugar-, and wound-mediated signalling pathways. Moreover, a functional interaction of circadian oscillator elements of A. thaliana with the Lin6 promoter and a diurnal rhythm of Lin6 expression have been substantiated. This complex regulation pattern is reflected by the identification of many well-defined cis-acting elements within the Lin6 promoter. This feature supports an integration of various stimuli mediated via extracellular invertase expression resulting in a co-ordinated cellular response to changing internal and external conditions. As sugars on their part induce Lin6 expression, this could result in signal amplification via a positive feedback loop. Furthermore, the extensive appearance and constellation of cisacting elements within the Lin6 promoter provides the basis to answer questions in signal cross-talk and signal integration in plant gene expression. In addition, the Lin6 promoter was successfully used as an inducible expression system. In transgenic tobacco lines an invertase inhibitor was expressed under control of the cytokinin-inducible Lin6 promoter. Thereby, a causal relationship between cytokinin and extracellular invertase for the delay of senescence was demonstrated. This study emphasises the importance of inducible expression systems to address specific questions on a molecular basis. The above-mentioned promoter sequences were obtained via sequential genome walks. Hereby two interesting structural features appeared. First, Lin5 and Lin7 genes are arranged in a direct tandem repeat on the genome. Second, a CACTA-like transposon insertion in intron I of the Lin5 gene was revealed. A primer pair deduced from the transposase region of this transposon allowed the amplification of similar sequences of various Solanaceae species.
In the last years, visual methods have been introduced in industrial software production and teaching of software engineering. In particular, the international standardization of a graphical software engineering language, the Unified Modeling Language (UML) was a reason for this tendency. Unfortunately, various problems exist in concrete realizations of tools, e.g. due to a missing compliance to the standard. One problem is the automatic layout, which is required for a consistent automatic software design. The thesis derives reasons and criteria for an automatic layout method, which produces drawings of UML class diagrams according to the UML specification and issues of human computer interaction, e.g. readability. A unique set of aesthetic criteria is combined from four different disciplines involved in this topic. Based on these aethetic rules, a hierarchical layout algorithm is developed, analyzed, measured by specialized measuring techniques and compared to related work. Then, the realization of the algorithm as a Java framework is given as an architectural description. Finally, adaptions to anticipated future changes of the UML, improvements of the framework and example drawings of the implementation are given.
The maximum of the brain electrical field after NoGo stimuli is located more anteriorly than that after stimuli that tells participants to respond. The difference in topography was called NoGo-Anteriorization (NGA). Recently, there was a debate, whether the NGA is related to a central inhibitory process or not. However, experiments showed that the NGA is not the result of motor potentials during Go trials, the NGA does not represent higher response conflict and or higher mental effort in NoGo trials, and the NGA is not based on less cognitive response selection in NoGo trials. Therefore, the experiments support the assumption that the NGA is connected to an inhibitory mechanism in NoGo conditions.
In a three-year study the current aeolian transportation processes were examined in a linear dune area previously used for grazing near Nizzana at the Israeli-Egyptian border. The research area was subject to heavy grazing across the border, which led to the total destruction of the natural vegetation in the period of 1967 to 1982. As a consequence, intensified aeolian activity and significant changes of the morphology of the dunes were observed. After the end of the grazingg on the Israeli side, a rapid return of the vegetation in the interdune corridors and on the footslopes of the dunes took place. In addition also a reduction of obviously active areas on the dune crests was observed. The situation on Egyptian territory west the border remained unchanged until today. This study is aimed at understanding the changed aeolian morphodynamics east the border. The emphasis was placed on the investigation of the spatial and temporal distribution of aeolian sand transport as well as on the influencing factors morphology, surface condition and vegetation.
The establishment of genomic approaches including the sequence determination of complete bacterial genomes started a new era in microbiological research. Since then more than two hundred prokaryotic and eukaryotic genomes have been completely sequenced, and there are additional complete genome projects including different bacterial species and strains in progress (http://www.tigr.org, http://www.sanger.ac.uk). The continously growing amount of bacterial DNA sequence information gives us also the possibility to gain deeper insight into bacterial pathogenesis. With the help of comparative genomics, microbiological research can focus on those DNA sequences that are present in pathogenic bacteria but are absent in non-pathogenic strains. With this knowledge and with the help of molecular biological methods such as PCR,DNA-chip technology, subtractive hybridisation, transcriptomics and proteomics we can analyse in detail what makes a particular bacterial strain pathogenic. This knowledge also gives us the possibility to develop new vaccines, therapeutic approaches or diagnostic tools. The aim of this work was the structural and functional analysis of DNA regions of uropathogenic Escherichia coli strain 536 that belong to the flexible E. coli gene pool. The first part of this thesis focused on the identification and structural characterisation of pathogenicity island V of strain 536 (PAI V536). PAI V536 is integrated at the pheV tRNA gene at 64 minutes of the E. coli K-12 chromosome. In addition to the intact pheV tRNA gene, a truncated copy ('pheV) that represents the last 22 bp of this gene’s 3'-end was identified 49 kb downstream of pheV on PAI V536. The analysis of the DNA sequence flanked by pheV and 'pheV revealed characteristics that are typical of PAIs. This DNA region exhibits homology to IS-elements and prophages and also comprises determinants coding for the Pix fimbriae, a phosphoglycerate transport system, an autotransporter, as well as for hypothetical proteins. Downstream of 'pheV, the K15 capsule determinant (kpsK15) of this strain is located. Structural analysis of the 20-kb kpsK15 locus revealed a so far unknown genetic organisation indicative of recombination events between a group 2 and group 3 capsule gene cluster. Downstream of the capsule determinant, the genes encoding a type II secretion system (general secretion pathway -GSP) are located on PAI V536. The K15 capsule locus was functionally characterized. Specific inactivation of each of the regions 1 to 3 of the kpsK15 gene cluster, and the use of a K15 capsule-specific antiserum demonstrated that this determinant is the functional K15 capsule locus of strain 536. It has been shown in an experimental murine model of ascending urinary tract infection with suckling mice that the K15 capsule contributes to urovirulence. Interestingly, the K15 capsule is not involved in serum resistance of strain 536. Inactivation of the PAI V536-encoded type II secretion system excluded a role of this general secretion pathway for capsule biosynthesis and virulence of strain 536 in the murine ascending urinary tract infection model. In the second part of the thesis, the transferability of PAIs was further investigated. Using PAI II536 as a model, mobilisation of this island from strain 536 into suitable recipient strains was investigated. For this purpose, an antibiotic resistance cassette, the R6K origin of replication as well as plasmid pGP704 carrying the mobilisation region of plasmid RP4 have been inserted into PAI II536. Transformation with the helper plasmid RP4, resulted a derivative of strain 536 that was used as a donor for conjugation experiments, while for recipient the pir + laboratory strain SY327 was used. After deletion the circularised PAI II536 was mobilised with the help of the conjugative helper plasmid (RP4) into the recipient laboratory strain SY327. The frequency of this event was about 10-8. It was also demonstrated that in the transconjugant strains the mobilized PAI II536 could be permanently present as a circular form and also can be integrated into the chromosome at the same chromosomal insertion site (leuX) as in the donor strain 536. Furthermore, after mobilisation and chromosomal integration of PAI II536 it was possible to remobilise this PAI back to a PAI II536-negative derivative of strain 536. The results obtained in this thesis increase our knowledge of the structure and function of a pathogenicity island of uropathogenic E. coli strain 536 and shed some light on the mechanisms contributing to genome plasticity and evolution of pathogenic E. coli variants.
Spreds are a new Sprouty-related family of membrane-associated proteins inhibiting the MAPK signaling pathway by interacting with Ras and Raf-1. Different studies have already demonstrated the inhibitory function of Spreds in cell culture systems, but the in vivo function of Spreds in the whole organism was still unclear. Therefore, Spred-2 knockout mice were generated using a gene trap approach. The Spred-2 deficiency was verified on RNA and protein levels and the lack of functional Spred-2 protein in mice caused a dwarf phenotype similar to achondroplasia, the most common form of human dwarfism. Spred-2-/- mice showed reduced growth and body weight, they had a shorter tibia length and showed narrower growth plates as compared to wildtype mice. Spred-2 promoter activity and protein expression were detected in chondrocytes, suggesting an important function of Spred-2 in chondrocytes and bone development. Furthermore, stimulation of chondrocytes with different FGF concentrations showed earlier and augmented ERK phosphorylation in Spred-2-/- chondrocytes as compared to Spred-2+/+ chondrocytes. These observations suggest a model, in which loss of Spred-2 inhibits bone growth by inhibiting chondrocyte differentiation through upregulation of the MAPK signaling pathway. An additional observation of Spred-2-/- mice was an increased bleeding phenotype after injuries, whereas the bleeding volume was extremely enlarged and the bleeding time was significantly prolonged. So far, hypertension as cause could be excluded, but to discover the physiological reasons for this phenotype, the different steps of the clotting cascade have to be investigated further. As the Spred-2 promoter activity studies demonstrated a high and specific Spred-2 expression in vascular smooth muscle cells and previous studies showed an interaction of Spreds with RhoA, a key regulator of vascular smooth muscle contraction, the regulation of smooth muscle contractility seems to be a good candidate of this phenomenon. Moreover, Spred-1 and Spred-2 specific antibodies were generated as important tools to study the protein expression patterns in mice. Furthermore, nothing was known about the Spred-2 promoter region and its regulation. Here, a detailed in situ analysis of the physiological promoter activity profile in the gene trapped Spred-2-deficient mouse strain was shown. In these mice, the beta-galactosidase and neomycin fusion gene (β-geo) of the gene trap vector was brought under control of the endogenous Spred-2 promoter, giving the opportunity to monitor Spred-2 promoter activity in practically every organ and their corresponding sub-compartments. X-Gal staining of sections of newborn and adult mice revealed 1) a very high Spred-2 promoter activity in neural tissues and different glands; 2) a high activity in intestinal and uterine smooth muscle cells, and kidney; 3) a low activity in heart, testis, lung, and liver; 4) an almost lacking activity in skeletal muscle and spleen, and 5) very interestingly, a very distinct and strong activity in vascular smooth muscle cells. Moreover, comparison of newborn and adult mouse organs revealed a nearly congruent Spred-2 promoter activity. These detailed data provide valuable information for further studies of the physiological functions of Spred-2 in organs showing strong Spred-2 promoter activity, which are in most of these organs still unclear. Finally, gene targeting vectors for Spred-1 and Spred-2 were cloned, to generate ES cells with a floxed exon 2 of the Spred-1 and Spred-2 gene, respectively. Now, these ES cells are valuable tools to establish conditional knockout mice. This is of major interest to investigate the physiological tissue specific functions of Spred-1 and Spred-2, especially if the double knockout mice are not viable.
Somites are repeated epithelial segments that are generated in a rhythmic manner from the presomitic mesoderm (PSM) in the embryonic tailbud. Later, they differentiate into skeletal muscle, cartilage and dermis. Somitogenesis is regulated by a complex interplay of different pathways. Notch/Delta signaling is one of the pathways well characterized in zebrafish through mutants affected in its different components. Previous work in mouse, chicken and zebrafish has shown that also additional components are required during somitogenesis, most importantly through an FGF and Retinoic acid (RA) gradient, as well as Wnt signaling. However, no zebrafish mutants with defects in these pathways showing specific somite malformations are described. This was explained by functional redundancies among related genes that have resulted from a whole genome duplication which occurred in a teleost fish ancestor 350 million years ago. As distinct duplicates exist in different teleost species, a large scale mutagenesis screen in the medaka (Oryzias latipes) has been performed successfully in Kyoto, Japan. I analyzed nine of the isolated medaka mutants that show variable aspects of somitic phenotypes. This includes a complete or partial loss of somite boundaries (e.g. bms and sne), somites with irregular sizes and shapes (e.g. krz and fsl) or partially fused and enlarged somites (e.g. dpk). Although some of these medaka mutants share characteristics with previously described zebrafish somite mutants, most of the mutants represent unique phenotypes, not obtained in the zebrafish screens. In-situ hybridization analyses with marker genes implicated in the segmentation clock (e.g. her7), establishment of anterior-posterior (A-P) polarity (e.g. mesp) and differentiation of somites (e.g. myf5, lfng) revealed that the medaka mutants can be separated into two classes. Class I shows defects in tailbud formation and PSM prepatterning, and lateron somite boundary formation was impaired in these mutants. A unique member of this class with a novel phenotype is the doppelkorn (dpk) mutant that has single fused or enlarged somites. This phenotype has not been reported till now in zebrafish somite mutants. In-situ analyses on dpk showed that stabilization of the cyclically expressed somitogenesis clock genes must be affected in this mutant. This is accompanied by a disrupted regulation of A-P polarity genes like mesp. This suggests that dpk is a mutant deficient in the wave front, which is necessary for the down-regulation of oscillating genes in the anterior PSM. Furthermore, as the initiation of oscillation of all three cyclic her genes was unaffected in dpk embryos, I could exclude that this mutant in affected in the Notch/Delta pathway. Another mutant that belongs to this class is the samidare (sam) mutant. Morphologically, sam mutants are similar to zebrafish after eight (aei). In both cases, the first 7-9 somites are formed properly, but after this somite formation ceases. Different to the situation in aei, sam mutant embryos presented an additional defect in the mid-hindbrain boundary (MHB) region. Similar MHB defects were described in the zebrafish fgf8 mutant acerebellar (ace). In ace zebrafish mutant, somites were only slightly defective, although FGF signaling has been shown to be important for somite formation in chicken, mouse and zebrafish. This was explained by functional redundancy between fgf8 and fgf24 ligands in the tailbud of zebrafish. Thus, it is interesting to suggest that the sam mutant, based on the parallel defects in somites and MHB, is a potential member of the FGF signaling pathway muatnts. It was shown that FGF plays a crucial role during MHB formation in medaka. In addition, I showed that fgf8 acts non-redundantly during tailbud formation and somitogenesis in medaka. Furthermore, I showed that FGF signaling regulates somite size also in medaka and that fgfr1 is the only FGF receptor expressed in the tailbud and somites. In class II medaka somite mutants, PSM prepatterning appears normal, whereas A-P polarity, boundary formation, epithelialization or the later differentiation of somites appears to be affected. Such mutants have not been isolated so far in zebrafish, mice or chicken. Therefore, medaka class II somite mutants seem to be a novel group of mutants that opens new perspectives to analyze A-P polarity regulation, determination and boundary formation in the presence of a normally functioning clock in the PSM. Identifying the encoding genes for all analyzed medaka somite mutants will contribute to the understanding of the molecular interactions of different signaling pathways involved during somitogenesis, and is expected to result in the identification of new components.
The Bafoussam area in west Cameroon is located within the Cameroon Neoproterozoic orogenic belt (north of the Congo craton) which is part of the Central African Fold Belt (CAFB).The evolution of the CAFB is related to the collision between the convergent West African craton, the São Francisco – Congo cratons and the Sahara Metacraton. The outcrop area stretches over a surface of ~1000 km2 and dominantly consists of granitoids which intruded wall-rocks of gneiss and migmatite during the Pan-African orogeny. The Bafoussam granitoid emplacement was influenced by the N 30 °E strike-slip shear zone in the prolongation of the Cameroon Volcanic Line, but also by the N 70 °E Central Cameroon Shear Zone. In the field, these two shear directions are expressed in the schistosity and foliation trajectories, fault orientation and the alignment of the volcanic cones as well. In the Bafoussam area, four types of granitoids can be distinguished, including: (i) the biotite granitoid, (ii) the deformed biotite granitoid, (iii) the mega feldspar granitoid, and (iv) the two-mica granitoid. These granitoids occur as elongated plutons hosting irregular mafic enclaves (amphibole-bearing, biotite-rich, and metagabbroic types) and are frequently cut by late pegmatites, aplite dykes and quartz veins. Petrographically, they range in composition from syenogranite (major), alkali-feldspar granite, granodiorite, monzogranite, quartz-syenite, quartzmonzonite to quartz-monzodiorite. Potassium feldspar, quartz, plagioclase and biotite are the principal phases, in cases accompanied by amphibole and accessory minerals such as apatite,zircon, monazite, titanite, allanite, ilmenite and magnetite. Sericite, epidote and chlorite are secondary minerals. In addition, the two-mica granitoid contains primary muscovite and sometimes igneous garnet. In the granitoids, potassium feldspar is orthoclase (microcline and orthoclase: Or81–97Ab19–3), and plagioclase is mainly oligoclase with some albite and andesine (An3–35Ab96–64).Biotite is Fe-rich (meroxene and lepidomelane, with some siderophyllite), having high Fe2+/(Fe2+ + Mg) ratios of 0.40–0.80. It is a re-equilibrated primary biotite and suggests calc-alkaline and peraluminous nature of the host granitoids. Amphibole is edenitic and magnesian hastingsitic hornblende, with high Mg/(Mg + Fe2+) ratios of 0.50–0.62. The evolution of the hornblende was dominated by the edenitic, tschermakitic, pargasitic and hastingsitic substitution types. Primary muscovite is iron-rich [Fe2+/(Fe2+ + Mg) = 0.52–0.82] and has experienced celadonite and paragonite substitutions. Igneous garnet is almandine–spessartine (XFe = 0.99 and XMn = 0.46–0.56). The euhedral grain shapes of garnet crystals and the absence of inclusions coupled with the high Mn and Fe2+contents (2.609–3.317 a.p.f.u and 2.646–3.277 a.p.f.u,respectively) and low Mg contents (0.012–0.038 a.p.f.u) clearly point to its plutonic origin. The Mn-depletion crystallization model is suggested for the origin of the analyzed garnet, i.e. initial crystallization of garnet inducing early decrease of Mn in the original melt. Aluminum-in-hornblende and phengite barometric estimates show that the granitoids crystallized at 4.2 ± 1.1 to 6.6 ± 1.0 kbar, corresponding to emplacement depths of 15–24 km.Zircon and apatite saturation temperature calibrations and hornblende–plagioclase thermometry yielded emplacement temperatures between 772 ± 41 and 808 ± 34 °C. Except the two-mica granitoid, the titanite–magnetite–quartz assemblage gives oxygen fugacities ranging from 10–17 to 10–13, suggesting that the granitoids were produced by an oxidized magma. Since the twomica granitoid lacks magnetite, it was originated from a magma under reducing conditions, below the quartz–fayalite–magnetite buffer. Fluid inclusions in quartz from hydrothermal veins are secondary in nature and are found in trails along healed microcracks or in clusters. Two types of fluid inclusion have been recognized, mixed aqueous–non-aqueous volatile fluid inclusions subdivided into aqueous-rich mixed and non-aqueous volatile-rich mixed fluid inclusions, and pure aqueous fluid inclusions.The non-aqueous volatile-rich mixed fluid inclusions are one-, two-, or three-phase inclusions, whereas the aqueous-rich mixed fluid inclusions are exclusively three-phase inclusions. Both have similar low to moderate salinities (1 to 10 equiv. wt. %). The total homogenization temperatures of the aqueous-rich mixed fluid inclusions are slightly lower than those of the nonaqueous volatile-rich mixed fluid inclusions, ranging from 150 to 250 °C and 170 to 300 °C,respectively. They contain nearly pure CO2, or CO2 with addition of 4.1–13.5 mole % CH4 as volatile constituents. Pure aqueous fluid inclusions are two-phase with lower total homogenization temperatures (130–150 °C) and salinities ranging from 3 to 8 equiv. wt. %. They display mixing salt system characteristics, having NaCl as the dominant salt and considerable amounts of other divalent cations. Aqueous-rich mixed fluid inclusions and pure aqueous fluid inclusions exhibit a low geothermal gradient value of 18 °C/km, whereas the non-aqueous volatiles-rich mixed fluid inclusions have a high density which correspond to high geothermal gradient of 68 °C/km. The studied granitoids are intermediate to felsic in compositions (56.9–74.6 wt. % SiO2)and have high contents of alkalis K2O (1.73–7.32 wt. %) and Na2O (1.25–5.13 wt. %) but low abundances in MnO (0.01–0.20 wt. %), MgO (0.10–3.97 wt. %), CaO (0.37–4.85 wt. %), P2O5(up to 0.90 wt. %). They display variable contents in TiO2 (0.07–0.91 wt. %), Fe2O3* (total Fe = 0.96–7.79 wt. %) and Al2O3 (12.0–17.6 wt. %) contents. The granitoids show a wide range of high-field-strength elements (HFSE) and large ion lithophile elements (LILE) contents, with felsic granitoids being enriched in HFSE and the intermediate granitoids displaying in contrast high LILE concentrations. They exhibit chemical characteristics of non-alkaline to mid-alkaline, alkali-calcic, calc-alkaline, K-rich to shoshonitic, ferriferous affinities. Chondrite-normalized rare earth element (REE) patterns are characterized by a strong enrichment in light compared to heavy REEs [(La/Sm)N = 3.23–9.65 and (Ga/Lu)N = 1.45–5.54, respectively], with small to significant negative Eu anomalies (Eu/Eu* = 0.28–1.08). Ocean ridge granites (ORG)normalized multi-elements spidergrams display typical collision-related granites pattern, with characteristic negative anomalies of Ba, Nb and Y, and positive anomalies in Rb, Th and Sm. The granitoids under study are genetically I-type granitoids (biotite granitoid, deformed biotite granitoid and mega feldspar granitoid) and one S-type granitoid (two-mica granitoid). The I-type granitoids are metaluminous (ASI: 0.70–1.00) or moderately peraluminous if highly fractionated (ASI: 1.01–1.06). The geochemistry and petrological features of these I-type granitoids argue for close genetic relationships and it is suggest that they originated from a single parent magma. The observed variability in mineralogy and major and trace element compositions in these granitoids are then the reflection of the fractional crystallization that evolved separation of plagioclase, biotite, K-feldspar and accessory minerals at the level of emplacement. The two mica S-type granitoid is exclusively peraluminous (ASI: 1.07–1.25) and classified as a peraluminous leucocratic granitoid or leucogranite. It is marked in its CIPW normative composition by the permanent presence of corundum, ranging between 0.12 and 3.03. The Bafoussam granitoids were emplaced in a syn- to post-collisional tectonic environment. The observed deformational features and the concentrations in Y, less than 40 ppm, confirm that they are related to an orogenesis. Whole-rock Rb–Sr isochrons defines an igneous crystallization ages of 540 ± 27 Ma for the biotite granitoid and 587 ± 41 Ma for the mega feldspar granitoid. These ages fit with the range of Pan-African granitoid ages (650–530 Ma) in West Cameroon and correspond to the Pan-African D2 deformation event in the Neoproterozoic Cameroon orogenic belt. The two-mica granitoid yields an older Rb–Sr isochron age of 663 ± 62 Ma which is considered to be probably a mixing age. The Nd–Sr isotopic compositions indicate that the I-type granitoids have been produced by partial melting of a tonalite–granodiorite source in the lower crust. This is supported by their initial 87Sr/86Sr(600 Ma) ratios (0.705–0.709) and by their WNd(600 Ma) values (0.2 to –6.3, mainly < 0). The two-mica granitoid was generated by partial melting of a greywacke-dominated source involving biotite-limited, biotite dehydration melting. Chemical data of the two-mica granitoid that support this hypothesis are low CaO/Na2O (0.11–0.38) and Sr/Ba (0.20–0.30), the high Rb/Sr (2.26–7.00), the high initial 87Sr/86Sr(600 Ma) ratios ranging from 0.708 to 0.720, the large range in Al2O3/TiO2 (47–204) and the negative WNd(600 Ma) values (–9.9 to –14.0). Moreover,the higher initial 87Sr/86Sr(600 Ma) ratios of the two-mica granitoid are consistent with an upper crust origin. The depleted mantle Nd model ages (TDM) of 1.3–2.3 Ga indicate that the studied granitoids originated by partial melting of Paleoproterozoic and Mesoproterozoic crust, with limited mantle-derived magma contribution. The high initial 87Sr/86Sr(600 Ma) ratios of these granitoids coupled with the wide negative WNd(600 Ma) values strongly suggest a very long residence time in the crust of their protoliths before the melting event. The petrologic signatures of the Bafoussam granitoids are similar to those described in other Pan-African belts of western Gondwanaland such as the neighbouring provinces of Nigeria and the Central African Republic, as well as in the Borborema Province of northeastern Brazil. This supports the previous hypothesis that the Central African fold Belt including Cameroon, Nigeria and the Central African Republic provinces has a continuation in Brazil.
The genetics of species differences is an outstanding question in evolutionary biology. How do species evolve to become phenotypically distinct and how is the genetic architecture organized that underlie species differences? Phenotypic diverged traits are supposed to be frequently involved in prezygotic isolation, i.e. they prevent the formation of hybrids, whereas postzygotic isolation occurs when hybrids experience a fitness reduction. The parasitic wasp genus Nasonia represents an appropriate model system to investigate the genetics of species differences as well as the genetics of postzygotic isolation. The genus consists of three species N. vitripennis, N. longicornis and N. giraulti that differ particularly in male traits that are assumed to posses an adaptive significance: courtship behaviour and wing size differences. The courtship behaviour consists of cyclically repeated series of head nods that are separated by pauses. The stereotypic performance allowed to split up the display into distinct courtship components. Males of N. vitripennis bear vestigial forewings and are incapable of flight, whereas N. longicornis wear intermediate sized wings and N. giraulti is fully capable of flying. Nasonia species can produce interspecific hybrids after removing Wolbachia bacteria induced hybrid incompatibilities with antibiotics. Postzygotic isolation occurs to different extent and is asymmetric among reciprocal crosses, e.g. inviability is stronger in the N. vitripennis (♀) x N. longicornis (♂) cross than in the N. longicornis (♀) x N. vitripennis (♂) cross. The formation of hybrids allow to study the genetic of species differences in QTL (quantitative trait locus) analyses as well as the genetics of postzygotic isolation causing hybrid inviability. The aim of the study was to investigate the genetic architecture of differences in courtship behaviour and wing size between N. vitripennis and N. longicornis and to assess the genetics of postzygotic isolation to gain clues about the evolutionary processes underlying trait divergence and establishment of reproductive isolation between taxa. In a QTL analysis based on 94 F2-hybrid individuals of an LV cross only few QTL for wing size differences have been found with relatively large effects, although a large proportion of the phenotypic variance remained unexplained. The QTL on courtship behaviour analysis based on 94-F2 hybrid males revealed a complex genetic architecture of courtship behaviour with QTL of large phenotypic effects that explained more than 40 % of the phenotypic variance in one case. Additionally, an epistatic analysis (non-additive interlocus interaction) of courtship QTL revealed frequent genetic interchromsomal relations leading in some instances to hybrid specific effects, e.g. reversion of phenotypic effects or the transgression of phenotypes. A QTL analysis based on a threefold sample size revealed, however, an overestimation of QTL effects in the analysis based on smaller sample size pointing towards a genetic architecture of many loci with small effects governing the phenotypic differences in courtship behaviour. Furthermore, the the study comprised the analysis of postzygotic isolation in the reciprocal crosses N. vitripennis (♀) x N. longicornis (♂) versus N. longicornis (♀) x N. vitripennis (♂) located several loci distributed over different chromosomes that are involved in hybrid incompatibility. The mapping of hybrid incompatibility regions reproduced for the first time the observed asymmetries in the strength of postzygotic isolation in reciprocal crosses of between the more distant related taxa within the genus Nasonia. Stronger postzygotic incompatibilities in the VL cross are supposed to result from the superposition of nuclear-nuclear incompatibilities with nuclear-cytoplasmic incompatibilities, whereas the coincidences of these to types of incompatibilities were found to be much weaker in the reciprocal LV cross.
Platelet interaction with the subendothelium is essential to limit blood loss after tissue injury. However, upon rupture of atherosclerotic plaques, this interaction may result in blood vessel occlusion leading to life threatening diseases such as myocardial infarction or stroke. Among the subendothelial matrix proteins, collagen is considered to be the most thrombogenic component as it directly activates platelets. Platelets interact with collagen, either indirectly through glycoprotein (GP) Ib-V-IX receptor complex, or directly through the major collagen receptor on the platelet surface, GPVI. The work presented here focused on studying the cellular regulation of GPVI. In addition, a possible role for GPVI in thrombus formation induced by atherosclerotic plaque material was investigated and it was found that GPVI plays an important role in this process. Using a recently published mitochondrial injury model, it was found that GPVI contains a cleavage site for a platelet-expressed metalloproteinase. Further studies showed that platelet activation by CRP, or thrombin induced down-regulation of GPIb, but not GPVI. In parallel, cellular regulation of GPV was studied and it was found that GPV is cleaved in vitro by the metalloproteinase ADAM17. In previous studies it was shown that injection of mice with the anti-GPVI mAb, JAQ1, induces GPVI down-regulation, which is associated with a strong, but transient, thrombocytopenia. Using new anti-GPVI mAbs, which bind different epitopes on the receptor, it is shown in this study that GPVI down-regulation occurs in an epitope-independent manner. Further experiments showed that antibody treatment induces a transient, but significant increase in bleeding time. Using different genetically modified mice, it is shown that, upon antibody injection, GPVI is both, shed from the platelet surface and internalized into the platelet. Signaling through the immunoreceptor tyrosine-based activation motif (ITAM) of the FcR chain is essential for both processes, while LAT and PLC2 are essential for the shedding process only. Antibody-induced increase in bleeding time and thrombocytopenia were absent in LAT deficient mice, showing that it is possible to uncouple the associated side effects from the down-regulation process. As antibody-induced GPVI internalization still occurs in LAT and PLC2 deficient mice, this suggests a novel signaling pathway downstream of GPVI that has not been described so far.
This study explores and examines the geomorphology of a large endorheic basin, approximately twice the size of Luxemburg, situated in the Etosha National Park, Namibia. The main focus is directed on how and when this depression, known as Etosha Pan, came into being. Geomorphological investigation was complemented and guided primarily by the application and interpretation of satellite-derived information. Etosha Pan has attracted scientific investigations for nearly a century. Unfortunately, their efforts resulted into two diverging and mutually exclusive views with respect to its development. The first and oldest view dates back to the 1920s. It hypothesized Etosha Pan as a desiccated palaeolake which was abandoned following the river capture of its major fluvial system, the Kunene River. The river capture was assumed to have taken place in the Pliocene/Early Pleistocene. In spite of the absence of fluvial input that the Kunene contributed, the original lake was thought to have persisted until some 35 ka ago, long after the Kunene severed its ties with the basin. The current size of the basin and its playa status was interpreted to have resulted from deteriorating climatic conditions. The opposing view emerged in the 1980s and gained prominence in the 1990s. This view assumed that there were an innumerable number of small pans on the then surface of what later to become Etosha Pan. Since the turn of the Pliocene to Early Pleistocene, these individual pans started to experience a combined effect of fluvial erosion during the rainy season and wind deflation during the dry period. The climatic regime during that entire period was postulated to be semi-arid as today. This climatic status was used to rule out any existence of a perennial lake within the boundary of Etosha since the Quaternary. Ultimately, these denudational processes, taking place in a seasonal rhythm, caused the individual pans to deepen and widen laterally into each other and formed a super-pan that we call Etosha today. Thus the Kunene River had no role to play in the development of the Etosha Pan according to this model. However, proponents of this model acknowledged that the Kunene once fed into the Owambo Basin and assigned the end of the Tertiary to the terminal phase of that inflow. Findings of this study included field evidence endorsing the postulation that the Kunene River had once flowed into the Owambo Basin. Its infilled valley, bounding with the contemporary valley of the Kunene near Calueque, was identified and points towards the Etosha Pan. It is deliberated that a large lake, called Lake Kunene, existed in the basin during the time. Following the deflection of the Kunene River to the coast under the influence of river incision and neo-tectonic during the Late Pliocene, new dynamics were introduced over the Owambo Basin surface. After the basin was deprived of its major water and sediment budget that the Kunene River contributed, it was left with only smaller rivers, most notably the Cuvelai System, as the only remaining supplier. This resulted in the Cuvelai System concentrating and limiting its collective load deposition to a lobe of Lake Kunene basin floor. The accident of that lobe is unclear, but it is likely that it constituted the deepest part of the basin at the time or it was influenced by neo-tectonic that helped divert the Kunene River or both. Against the backdrop of fluvial action that was initiating the new lake, most parts of the rest of the basin, then denied of lacustrine activity, were intermittently riddled with a veneer of sediment, especially during phases of intensified aeolian activity. In the mean time, the area that was regularly receiving fluvial input started to shape up as a distinct lake with the depositions of sediments around the water-body, primarily via littoral action, serving as embankment. Gradually, a shoreline is formed and assisted in fixing and delineating the spatial extent of the new and much smaller lake, called Lake Etosha. That Lake Etosha is the predecessor of the modern day Etosha Pan. Indicators for a perennial lake found in this study at Etosha include fossil fragments of Clariidae species comparable to modern species measuring some 90 cm, and those of sitatunga dated to approximately 5 ka. None of these creatures exist today at Etosha because of their ecological requirements, which among others, include permanent water. The sitatunga, in addition, is known as the only truly amphibious antelope in the world. Since its inception, the new lake underwent a number of geomorphological modifications. A prominent character amongst these modifications is the orientation of the lake, which has its long-axis oriented in the ENE-WSW direction. It resulted from wave action affected by the prevailing dominant northeasterly wind, which is believed to have been in force since the Middle Pleistocene. Lake Etosha has also witnessed phases of waning and waxing under the influence of the prevailing climatic regime. Over the last 150 ka, the available data intercepted about seven phases of high lake levels. These data are generally in agreement with regional palaeoclimatic data, particularly when compared with those obtained from neighbouring Makgadikgadi Pans in Botswana. The last recorded episode of the wet phase at Etosha was some 2,400 years before the present.
The genus Pogonomyrmex is predisposed for analyzing the evolution of ant colony characteristics in general and the sociogenetic structure in particular, due to the renowned biology of several species and the diversity of mating frequency and queen number. This variation in the sociogenetic structure of colonies produces a high variance in intracolonial relatedness which can be a major component driving the evolution of various colony characteristics. To exactly determine the variability of the intracolonial relatedness in the genus Pogonomyrmex both were analyzed, the number of matrilines and patrilines, in selected members of Pogonomyrmex, namely P. (sensu stricto) rugosus, P. (sensu stricto) badius and P. (Ephebomyrmex) pima using DNA fingerprint techniques. The evolution of these colony characteristics were tried to be explained within a phylogenetic framework. For that purpose we constructed a gene-tree of 39 species of the genus Pogonomyrmex. The taxon sampling covered about 83 % of the North American species and 43 % of the South American species. Effective multiple mating of queens was confirmed for P. rugosus (me=4.1) and P. badius (me=6.7). Additionally, both species are monogynous. These results corroborate behavioral observations of multiple mating for these species. Multiple mating is now known from 9 Pogonomyrmex species (behavioral evidence for 3 species – genetic evidence for 6 species). However, in P. (E.) pima all queens that were analyzed were single mated (me=1.0). Therefore, multiple mating may have either evolved early during the evolution of the genus Pogonomyrmex and has subsequently been lost in the subgenus Ephebomyrmex (plesiomorphic hypothesis), or it has first been evolved in the subgenus Pogonomyrmex sensu stricto (apomorphic hypothesis). In P. huachucanus, a species basal to the North- American sensu stricto complex, smaller effective mating number of queens compared to its sensu stricto relatives (J. Gadau and C.-P. Strehl, unpublished) probably do mirror a change from monandry to polyandry during the evolution of more advanced sensu stricto species, which would support the apomorphic hypothesis. The intracolonial relatedness in P. (E.) pima is however rather low. This is probably the result of multiple reproducing queens (polygyny). Polygyny is also documented for at least four other species of the subgenus Ephebomyrex, but so far P. (E.) pima is the only species with genetic evidence. It might be that there was an evolutionary trade-off within the subgenus Ephebomyrmex between polyandry and polygyny. Therefore, both subgenera retained a high intracolonial genetic diversity. This high genetic diversity might be one cause for the success and radiation of the genus Pogonomyrmex in arid environments. Evolution might have favored high genetic diversity of Pogonomyrmex colonies, because it helps colonies to improve their colonial organization and efficiency in performing external tasks. At least in P. badius a link between patrilines and physical polyethism was found, indicative of an improvement of colonial organization via polyandry. Furthermore, the documented extreme levels of polyandry might help P. badius females to overcome the possibility of inbreeding due to restricted dispersal. Restricted dispersal is also found in P. (E.) pima due to wingless, intermorphic queens. However, in P. (E.) pima inbreeding is probably prevented by outcrossing via males because no significant inbreeding is found. In the presented gene trees the subgenus Pogonomyrmex Ephebomyrmex was separated from the subgenus Pogonomyrmex sensu stricto. Therefore, P. Ephebomyrmex might be elevated to generic status, also due to its distinct morphological and life history characters. Nevertheless, for a precise taxonomic revision a broader complement of species has to be applied. Regularly a low number of unrelated workers was found in P. rugosus colonies, which probably stem from brood raids between mature and founding colonies. It is well known that most founding colonies are destroyed by neighboring conspecific mature colonies, but so far it was assumed that the brood of these colonies was also destroyed. This often neglected aspect might be an important fitness token for mature colonies.
Two phases of reef sampling were carried out. The first included regular samples taken along the coastline of Aqaba (27km long) at depths of 4-15m, and used to determine spatial distribution of pollution. The second phase included three 20cm-deep cores obtained from within the industrial zone. These cores were drilled from pre-dated communities, where the growth rate was determined earlier to be 10mm y-1, therefore the core obtained represented a period of 20 years (i.e. 1980-2000). The cores were used to reconstruct the metal pollution history at the most heavily used site along the coast (industrial zone).All samples were examined with respect to their metal content of Cd, Pb, Cu, Zn, Ni, and Cr. Almost all of them have shown records above the calculated background values. Mean values of Cd, Pb, Cu, Zn, Ni and Cr recorded along the coast were 1,25; 4,26; 9,76; 11,40; 2,29 and 10,522, µg g-1 respectively, and for core samples 1.4; 4.2; 5.7; 6.4; 2.3 and 8.21 µg g-1 respectively. Spatial distribution of metal enrichment in reef samples have shown a general and clear increasing trend towards the south. Same increasing trend was also in core samples where the six metals have shown a prominent increasing trend towards the core surface indicating an increase of coastal activities during the last twenty years. High and relatively high values were recorded at the oil port, the industrial area and main port, and thus categorized as highly impacted areas. Intermediate metal content were recorded in samples of the north beach, and thus classified as being relatively impacted, where the lowest metal concentrations were observed at the marine reserve, the least impacted site along the coast. The high enrichment of metal is attributed mainly to anthropogenic impacts. The natural inputs of the six metals studied in the Gulf of Aqaba are generally very low, due to the geographic positions and the absence of wadi discharge and as a result of low rainfall. Several potential sources of heavy metals were investigated. The industrial-related activities, port operations and phosphate dust were among the main sources currently threatening the marine ecosystem in Aqaba. Applying the Principle Components Analysis method (PCA) to all samples taken along the coastline has resulted in categorizing three different groups according to their metal enrichment, the first is composed of samples taken from the north beach and the main port with intermediate to high enrichment, the second joined the samples of the marine park and the marine reserve with low and relatively low enrichment, and the last group joined samples of the industrial zone and the oil port with high enrichment. The Principle Component Scores were also utilized to confirm the spatial distribution and relationships of the examined heavy metals along the coast. Two models (interpolated by SURFER  7.0 and ArcView 3.2a) were developed, the first was based on the PC scores of the first component, and shows clearly the positive anomalies in metal concentrations along the coast. The second model was developed by plotting the second factor scores on a landuse map of Aqaba. According to these models, it has shown that the positive anomalies are associated with three different zones; industrial area, the main port and the oil port. The results have shown that coral reefs can be used as good environmental indicator for assessments and monitoring processes, and they can provide data and information on both the spatial distribution of pollution and their history. The present work is the first to document the environmental status along the whole coast of Aqaba and the first to use coral reef as a tool/ indicator.
Corynebacterium glutamicum is together with C. callunae and C. efficiens a member of the diverse group of mycolic-acid containing actinomycetes, the mycolata. These bacteria are potent producer of glutamate, lysine and other amino acids on industrial scale. The cell walls of most actinomycetes contain besides an arabinogalactan-peptidoglycan complex large amounts of mycolic acids. This three-layer envelope is called MAP (mycolyl-arabinogalactan-peptidoglycan) complex and it represents a second permeability barrier beside the cytoplasmic membrane similar to the outer membrane of Gram-negative bacteria. In analogy to the situation in the outer membrane of Gram-negative bacteria, channels are present in the mycolic acid layer of the mycobacterial cell wall for the passage of hydrophilic solutes. Molecular studies have provided far-reaching findings on the amino acid flux and its balance in C. glutamicum in general, but the L-glutamate export still remains unknown. The properties of the outer layers, typical of mycolata, seem to be of major importance in this process, and diffusion seems to play a key role for this part of the cell wall. The major aim of this thesis was to identify and study novel channel-forming proteins of the amino acid producers C. glutamicum, C. callunae and C. efficiens. Cell wall extracts of the organisms were investigated and a novel pore-forming protein, named PorH, that is homologue in all three organisms, was detected and characterized. PorHC.glut was isolated from C. glutamicum cells cultivated in minimal medium. The protein was identified in lipid bilayer experiments and purified to homogeneity by fast-protein liquid chromatography across a HiTrap-Q column. The purified protein forms cation-selective channels with a diameter of about 2.2 nm and an average single-channel conductance of about 2.5 nS in 1 M KCl in the lipid bilayer assay. Organic solvent extracts were used to study the permeability properties of the cell wall of C. callunae and C.efficiens. The cell extracts contained channel-forming activity, the corresponding proteins were purified to homogeneity by fast-protein liquid chromatography across a HiTrap-Q column and named PorHC.call and PorHC.eff. Channels formed by PorHC.call are cation-selective with a diameter of about 2.2 nm and an average single-channel conductance of 3 nS, whereas PorHC.eff forms slightly anion selective channels with an average single-channel conductance of 2.3 nS in 1 M KCl in the lipid bilayer assay. The PorH proteins were partially sequenced and the corresponding genes, which were designated as porH, were identified in the published genome sequence of C. glutamicum and C. efficiens. The chromosome of C. callunae is not sequenced, but PorHC.call shows a high homology to PorHC.eff and PorHC.glut. The proteins have no N-terminal extension, only the inducer methionine, which suggests that secretion of the proteins could be very similar to that of PorAC.glut of C. glutamicum. PorHC.glut is coded in the bacterial chromosome by a gene that is localized in the vincinity of the porAC.glut gene, within a putative operon formed by 13 genes that are encoded by the minus strand. Both porins are cotranscribed and coexist in the cell wall, which was demonstrated in RT-PCR and immunological detection experiments. The arrangement of porHC.glut and porAC.glut on the chromosome is similar to that of porBC.glut and porCC.glut and it was found that PorAC.glut, PorHC.glut, PorBC.glut and PorCC.glut coexist in the cell wall of C. glutamicum. The molecular mass of about 6 kDa of the PorH channel forming proteins is rather small and suggests that the cell wall channels are formed by oligomers. A possibly hexameric form was demonstrated for PorHC.glut in Western blot analysis with anti- PorHC.glut antibodies. Secondary structure predictions for PorHC.glut, PorHC.call and PorHC.eff predict that a stretch of about 42 amino acids of PorHC.glut and 28 amino acids of PorHC.call and PorHC.eff forms amphipathic -helices with a total length of 6.3 nm and 4.2 nm respectively. This should be sufficient to cross the mycolic acid layer. Another objective of this work was to establish an heterologous expression system for corynebacterial channel-forming proteins, to investigate the channel-forming properties of the up to now only hypothetical porins PorA, PorB, PorC from C. efficiens and PorC from C. glutamicum. We could demonstrate with recombinant expression experiments in E. coli that porBC.eff and porCC.eff encode for channel-forming proteins. They are, like PorBC.glut, anion-selective with a similar single-channel conductance of 1 nS in 1 M KCl.
In a first aspect of this work, the development of photonic crystal based widely tunable laser diodes and their monolithic integration with photonic crystal based passive waveguide and coupler structures is explored theoretically and experimentally. In these devices, the photonic crystal is operated in the photonic bandgap which can be used for the realization of effective reflectors and waveguide structures. Such tunable light sources are of great interest for the development of optical network systems that are based on wavelength division multiplexing. In a second aspect of this work, the operation of a photonic crystal block near the photonic band edge is investigated with respect to the so-called superprism effect. After a few introductory remarks that serve to motivate this work, chapter 3 recapitulates some aspects of semiconductor lasers and photonic crystals that are essential for the understanding of this work so that the reader should be readily equipped with the tools to appreciate the results presented in this work.
Rhodococcus equi is a Gram-positive intracellular pathogen which can cause severe bronchopneumonia in foals. In recent years, the role of this bacterium as human pathogen has been noted, as R.equi infections in humans have increase in frequency. This increase is associated with the rise in immunosupressed individuals, specially AIDS patients, where infection leads to symptoms and pathology similar to those seen in foals with a high mortality rate. Due to its capability to survive and multiply in murine and equine macrophages, R.equi has been classified as a facultative intracellular bacterium. R.equi is found frequently in macrophages in alveolar infiltrate from infected animals. The pathogenicity of R.equi depends on its ability to exist and multiply inside macrophages and has been associated with the presence of virulence plasmids. It has been observed that, inside foal alveolar macrophages, R.equi-containing vacuoles (RCVs) do not mature into phagolysosomes. However, most of the intracellular events during R.equi infection have not been investigated in detail. The aim of this study was to elucidate the intracellular compartmentation of R.equi and the mechanism by which the bacteria avoid destruction in host macrophages. The importance of the virulence-associated plasmids of R.equi for the establishment of RCVs was also evaluated. Furthermore, the intracellular fate of viable and non-viable R.equi was compared in order to study whether viability of R.equi influeciantes the establishment of RCVs. In this study, the RCV was characterized by using a variety of endocytic markers to follow the path of the bacteria trhough murine macropages. Transmission electron microscopy-base analysis showed that R.equi was found equally frequently in phagosomes with loosely or thightly apposed membranes, and RCV often contains numerous membranous vesicles. Laser scanning microscopy of infected macrophages showed that the majority of phagosomes containing R.equi acquired transiently the early endosomal markers Rab5, Ptlns3P, and EEA-1, suggesting initially undisturbed phagosome maturation. Although the RCV acquired some late endosomal markers, such as Rab7, LAMP-1, and Lamp-2, they did not acquired vATPase, did not interact with pre-labeled lysosomes, and failed to acidify. These data clearly suggest that the RCV is a compartment which has left vacuoles that resemble multivesicular body compartments (MVB), which are transport intermediates between early and late endosomes and display internal vesicles very similar to the ones observed within RCVs. Analyisis of several R.equi strains containing either VapA- or VapB-expressing plasmids or neither demonstrated that the possession of the virulence-associated plasmids does not affect phagosome trafficking over a two hour period of infection. The finding that non-viable R.equi was still able to inhibit phagosome maturation (although not to the same extent as viable R.equi did) suggests that heat-insensitive factors, such as cell periphery lipids, may play a major role in inhibition of phagosome maturation, although heat-sensitive factors may also be involved.
Nonlinear frequency conversion of low-energy fs laser pulses was investigated in solid-state media. Raman conversion in the white-light-free regime of impulsive stimulated Raman scattering was achieved by pumping KGW crystal with Bessel beam. Efficient supercontinuum generation was demonstrated for sub-microjule pulses focused into microstructure fiber. Application of four-wave mixing techniques to monitoring of the excited-state dynamics in polyatomic molecules was demonstrated. Time constants of the processes related to vibrational energy redistribution upon the initial photoexcitation of stilbene-3 were determined by means of pump-CARS technique, where CARS process served as an effective mode-selective filter. Spectral as well as temporal properties of electronic relaxation pathway in azulene derivatives were explored by using transient population gratings and pump-probe transient absorption techniques.
Very small, thioglycerol (TG)-capped CdS nanoparticles were synthesized by a wet chemical technique and investigated in the framework of this thesis. Also glutathione-capped particles were investigated for a comparison of the capping agents. High-resolution photoelectron spectroscopy using high-brilliance synchrotron radiation was applied as the major tool for the characterization of these particles. Additionally, the particles were investigated with UV-VIS absorption spectroscopy, XPS using a laboratory source, valence band photoemission spectroscopy (VBPES), near-edge x-ray absorption spectroscopy (NEXAFS), and micro-Raman spectroscopy to address various aspects of the particles. In the beginning, an overview on size quantization effects is given to create a theoretical background behind the work presented in this thesis. Furthermore, an overview of various conventional techniques for size determination is presented. Exact information about size, shape and size distribution of nanoparticles is not yet achievable because of experimental limitations of the various size determination methods. Nanoparticles, with a range of sizes from 1.1 to 4. 2 nm, were synthesized using non-aqueous preparation and a TG capping. It is demonstrated that the use of the non-aqueous wet chemical synthesis method enables the production of very small particles and prohibits the aging of the particles. Furthermore, TG capping leads to a significant improvement for a narrow size distribution. Moreover, the results are very reproducible with TG capping and non-aqueous synthesis. Monodispersed particles can be produced by a size selective precipitation method, however, the reproducibility is questionable due to the aqueous medium of the synthesis in this case. High-resolution photoemission measurements on the small particles, i.e., 1.1 nm (CdS-A), 1.4 nm (CdS-B), 1.7 nm (CdS-C), and 1.8 nm (CdS-D, glutathione-capped), revealed five components as constituents of the S 2p signal after a careful data evaluation. Furthermore, it was observed that the particles with different sizes and capping show differences in the photoemission spectra and also in the beam damage behaviour. The different components of CdS-B were assigned as S atoms with different Cd neighbors, S atoms from thiol and S atoms in a partially oxidized state, based on the observed intensity changes of these components as a function of photon energy and beam damage, and on previous photoemission work on CdS nanoparticles [23, 45]. Furthermore, it was found that this assignment cannot be directly transferred to other particles. A new approach of structural model-based photoemission intensity calculations in comparison with the experimental data is presented. This enables us to understand subtle features in the photoemission spectra, in particular the intensity changes of the different components as a function of photon energy and beam exposure. This approach is especially applied to CdS-B (as some structural information for this particle is avialable from XRD), using three different structural models. It is found that a structural model with 33 S atoms can explain the experimental intensity changes of CdS-B. Furthermore, it is found that the photoemission spectra can be used to determine the particle size indirectly, as other plausible models show significant deviation from the experimental data. To study the various aspects by calculations, such as the influence of the particle shape and of the value of the mean free path, a program developed with L. Weinhardt and O. Fuchs is used for the intensity calculations. In order to determine a reasonable value of the mean free path for the used photon energies, two different equations from previous reports (Seah et al. and Powell et al.) are applied. As average mean free path values for the two photon energies we chose 5.5 ± 2 Å (254 eV) and 14 ± 2 Å (720 eV). The program calculation confirms the result of simple “manual” calculations of the different models. Moreover, it is tested that the value of , used in the calculations does not produce any significant influence on the calculation results. Another interesting feature is derived from the calculations that a model with a rather round shape produces similar intensity ratios for the different components to those of the data. Thus this new approach of analysis of photoemission spectra offers a way to determine particle sizes and to some extent to give an impression of the approximate particle shape. Furthermore, it is observed that the electronic band gap is larger compared to the optical band gap, which was attributed to an enhanced electron-hole correlation for optical absorption in small particles. The XPS experiments performed in the laboratory using an x-ray tube, show that the thin films produced from a freshly synthesized nanoparticle solution are fairly homogeneous and non-charging. Moreover, annealing experiments indicated that TG-capped particles posses less thermal stability as compared to MPA-capped particles. It was demonstrated that beam-induced effects play a major role. However, the knowledge of the time scale for such effects gives the possibility to record photoemission spectra with fairly good signal quality and to extrapolate to zero radiation damage. Further, particles with different sizes and capping show different beam damage behaviour. The thin film preparation by electrophoresis results in significant changes in the spectrum indicating agglomeration, while the drop-deposition technique points towards spectral changes on the rim of the sample, which can be avoided by focusing the radiation to the centre of the deposited dried drop. Micro-Raman experiments carried out in collaboration with C. Dem, Dr. M. Schmitt and Prof. W. Kiefer exhibited major differences in the spectra of nanoparticles as compared to those of the capping molecule thioglycerol. For instance, the absence of the S-H vibrational modes indicates the consumption or removal of all unreacted capping molecules. There is definitely a need for further detailed investigations concerning various interesting aspects of this work. For instance, it would be of significance to extend the program calculations to more models. Also more information about the band gap opening has to be gathered in order to find out the reason for the larger electronic band gap as compared to the optical band gap. The photoemission analysis approach using a model calculation has to be extended to differently prepared nanoparticles, in particular, to address the differences in the location of the various species in the particle as a function of preparation. The efforts of XRD simulations by C. Kumpf et al. [50] may reveal significant new information about the particle size and the size distribution. It can be expected that the program calculations, if extended to more models, can prove the potential of photoelectron spectroscopy to serve as a tool for size and shape determination of nanoparticles, which is a new contribution to the investigation of nanoparticles.
Within the studies concerning metallo-silanols, halfsandwich-tungsten complexes have been silanol-functionalized at the cyclopentadienyl ligand. The stability and the condensation behavior have been investigated. Thus, it was shown that these complexes are stable enough for isolation but they are reactiv enough for time-effective condensation reactions with diverse chlorosilanes, chlorostannanes or metalhalogenides. These processes are characterized by an increased reactivity in contrast to metallo-silanols with a direct metal-bonded silanol group and proves that the separation of the silanol group has to be regarded as a successful manipulation. In addition, this modification allows a wide variation of the ligand sphere of the metal which was shown by H/Cl exchange, methylation, silylation or phosphine substitution. These changes evoke a small but significant influence on the silanol group. For example leads an introduced phosphine to an enhanced stability of the silanol function. A further separation of the silanol group from the metal by an additional alkylidene spacer leads to the complete lost of the stabilizing effect of the metal fragment and generates silanols which show a condensation behavior very similar to those of ordinary organosilanols.
Protein kinase B (PKB), a serine threonine kinase, is highly involved in the regulation of cellular proliferation and survival. To characterize PKB’s function in lymphocyte development and activation, transgenic (tg) mice that express a membrane targeted constitutively active form of PKBa (myr PKB) in T and B cells were analysed. Thymocytes from myr PKB tg mice showed enhanced proliferation after T cell receptor (TCR) engagement compared to wild type (wt) mice. Astonishingly, myr PKB tg thymocytes were capable to proliferate in response to PMA only and were also less sensitive to inhibition by the calcineurin inhibitors CsA or FK506, which indicates the proliferative response of myr PKB tg T cells is relatively independent of calcium mobilisation and calcineurin activity. In addition, when TCR signalling was inhibited by the MEKinase inhibitor PD98059 or the Srckinase inhibitor PP1 myr PKB tg thymocytes again were more resistant to inhibition. Western blot analysis revealed myr PKB enhances activation of the kinases Lck, Raf and Erk after TCR/CD3 stimulation. Thus, myr PKB renders proliferative responses of thymocytes more sensitive to TCR signals by positive regulation of the Lck-Raf-MEK-Erk signalling pathway. Studies on the cellular location of the tg protein showed myr PKB is located in membrane socalled “lipid rafts”. Furthermore, we found that after TCR/CD3 ligation endogenous cytoplasmic PKB moves into “lipid rafts”, which highlights PKB as a crucial mediator of TCR proximal signalling events. Analysing three different TCR tg model systems for positive and negative selection of immature precursors in the thymus, we found myr PKB promotes positive selection of CD4+ but not CD8+ T cells. This most likely results from PKB’s positive cross-talk on Lck-Raf-Erk signalling, which is known to influence thymocyte selection and CD4/CD8-lineage choice. Furthermore, myr PKB enhances phosphorylation of glycogen synthase kinase 3 (GSK3), a negative regulator of the transcription factor NFAT (nuclear factor of activated T cells) and T cell activation, and of the adapter protein c-Cbl. Concerning negative selection, myr PKB enhanced (OT1 mice), reduced (HY mice) or had no influence (OT2 mice) on negative selection. Thus, myr PKB’s effect on negative selection strongly depends on the model system analysed and this most likely results from differences in TCR affinity/avidity and TCR specificity for MHC. 106 Peripheral CD4+ T cells from myr PKB tg mice showed enhanced production of both Th1 and Th2 cytokines. Furthermore, after TCR/CD3 stimulation in the presence of TGF-b1, wt CD4+ T cells showed a drastic inhibition of proliferation, whereas myr PKB tg CD4+ T cells proliferated even better, i.e. they were resistant to the inhibitory TGF-b1 signals. Expression of myr PKB in B cells leads to reduced Ca2+ flux and proliferation after BCR stimulation, but activation of Lyn, SLP-65, c-Cbl and GSK-3 were enhanced. When we analysed B cell subsets in myr PKB tg mice, a decrease in immature and mature B cells became obvious, whereas cell numbers for marginal zone (MZ) B cells were normal. In aged myr PKB tg mice we detected a very strong reduction of pro/pre and immature B cell populations in the bone marrow, indicating PKB is very important for maintenance of B cell development. Furthermore, myr PKB also lead to a strong reduction of peritoneal B-1 cells. However, expression of NFATc1, which is required for B-1 cell development, was comparable between wt and myr PKB tg B-1 cells. To analyse the effect of myr PKB on immunoglobulin production, mice were immunized with thymus dependent (TD) and independent (TI) antigens. In both cases, B cell responses were strongly elevated in myr PKB tg mice. Finally, RT-PCR analyses of in vitro expanded B cells revealed increased Blimp-1 and Notch3 expression in myr PKB tg B cells, which might be primary candidates involved in their enhanced effector function. In summary, this study clearly shows an important cross-talk between PKB and various critical signalling molecules downstream of the TCR and BCR. Thereby active PKB modulates and regulates the thresholds for thymocyte selection and T cell activation as well as for B cell development and function.
A large variety of sex determination systems have been described in fish. However, almost no information is available about sex determination in the classical fish models, the zebrafish Danio rerio and the pufferfish Takifugu rubripes. A DNA-binding protein gene called dmrt1bY (or DMY) has been recently described as an outstanding candidate for the primary sex-determining gene in the medaka fish Oryzias latipes. But this gene is not the universal master sex-determining gene in teleost fish, since dmrt1bY is not found in most other fishes. Hence, other fish models need to be examined including the platyfish Xiphophorus maculatus. Xiphophorus maculatus has three types of sex chromosomes (X, Y and W; females are XX, WX or WY; males are XY or YY). Its gonosomes are at an early stage of differentiation. The sex-determining locus on the sex chromosomes is flanked by two receptor tyrosine kinase genes, the Xmrk oncogene and its protooncogenic progenitor gene egfrb, which both delimit a region of about 0.6 centiMorgans. This situation should allow the positional cloning of the sex-determining gene (SD) of the platyfish. For this purpose, Bacterial Artificial Chromosome (BAC) contigs were assembled from a BAC library of XY males constructed in our laboratory, using the oncogene Xmrk, egfrb, as well as a Y-specific pseudogene called ps-criptY as starting points. The ps-criptY sequence was found to be closely linked to the SD gene, since no recombination was observed between SD and ps-criptY in more than 400 individuals tested. Two major BAC contigs for the X chromosome (about 2.5 Mb) and three major BAC contigs for the Y chromosome (about 3.5 Mb) were built up and analyzed by strategic sequencing. These are some of the largest contigs ever assembled for the sex chromosomes of a non-mammalian vertebrate species. The molecular analysis of the ps-criptY contig was the major objective of this work. The Y-specific ps-criptY contig has been extended over 1 Mb in this work with 58 identified molecular markers. Approximatively 700 kb of non-redundant sequences has been obtained from this contig by strategic sequencing. Numerous Y-linked markers from the contig including ps-criptY were also detected on the X chromosome. Nevertheless, major structural differences were observed between the X and Y chromosomes. Particularly, a large region, which is present at one copy on the X chromosome and contains several candidate genes, was found to be duplicated on the Y chromosome. Evidence for an inversion in the sex-determining region and for the Y-specific accumulation of a repeated sequence called XIR was also obtained. Such events might correspond to an initiation of differentiation between both types of gonosomes. Accumulation of transposable elements was also observed in the ps-criptY contig. A DNA transposable element, helitron, was isolated from the sex-determining region of X. maculatus. Three copies of helitron are located on the ps-criptY contig and one copy on the X-linked contig (helitron has roughly 15 copies per haploid genome). No in-frame stop codon, truncation or intron was found in these four copies, which present high nucleotide identities to each other. This suggests that helitron elements might be active or have been recently active in X. maculatus. A consensus open reading frame of helitron was also assembled from medaka (Oryzias latipes) genomic sequences. Two candidate genes from the ps-criptY contig are also located on the W chromosome in the X. maculatus Usumacinta strain (heterogamety). These markers show the relationship between the different types of gonosomes and allow to compare the male and female heterogameties in the platyfish. Several gene candidates were identified in the ps-criptY contig. However, some of them such as msh2, cript, igd and acr probably correspond to pseudogenes. Interestingly, a novel gene, called swimy, is exclusively expressed in spermatogonia of the adult testis. Swimy is a gene encoding a DNA-binding protein with several putative DNA-binding domains. The data suggest that swimy is a very promising candidate for the master SD gene. Another novel gene, which is called fredi and encodes a novel helix-turn-helix protein, is predominately expressed in the adult testis and currently under scrutiny. There is no doubt that the master SD gene of X. maculatus will be identified by positional cloning. Further molecular analysis of the contigs built in this work will shed new light on the molecular mechanism of sex determination and the evolution of sex chromosomes in fish.
Cloning and functional characterization of novel genes expressed preferentially in the human retina
(2005)
The human retina is a multi-layered neuronal tissue specialized for the reception and processing of visual information. The retina is composed of a great diversity of neuronal cell types including rod and cone photoreceptors, bipolar cells, ganglion cells, amacrine cells, horizontal cells and Müller glia. In response to light, a coordinated series of molecular events, the so-called phototransduction cascade, is triggered in photoreceptor cells and the signals from the photoreceptors are further processed by the bipolar and ganglion cells to the higher centers of the brain. The retina as highly complex system may be greatly susceptible to genetic defects which can lead to a wide range of disease phenotypes. Therefore, isolation and characterisation of the genes active in the human retina will facilitate our deeper understanding of retinal physiology and mechanisms underlying retinal degeneration and provide novel candidates for the retinal disease genes. To identify novel genes that are specifically or predominantly expressed in the human retina, a cDNA library enriched for retina specific transcripts was generated using suppression subtractive hybridization (SSH) technique. In total, 1113 clones were randomly isolated from the retina SSH cDNA library and partially sequenced. On the basis of BLASTN algorithm analysis these clones were classified into four categories including those with I) significant homology to known human genes (766/1113), II) significant homology to partial transcripts and hypothetical gene predictions (162/1113), III) no homology to known mRNAs (149/1113), and IV) vector sequences and clones derived from mitochondrial genes (36/1113). After correcting for redundancy, category I represented 234 known human genes and category II a total of 92unknown transcripts. Clones from category I, were selected for expression analysis by RT-PCR in a great number of human tissues. This resulted in the identification of 16 genes which were expressed exclusively in the retina, 13 which were highly expressed in the retina compared to other tissues, 12 genes which were specifically expressed in neuronal tissues and 48 ubiquitously expressed genes. Thus, our expression analysis resulted in the identification of 29 genes exclusively or abundantly transcribed in the human retina. Of those, retina specific genes L25,L33, L35, L37, L38 and L40 were selected for further analysis. To characterize the complete mRNA sequences of these transcripts a full-length human retina cDNA library was constructed. The analysis of the L25 gene revealed three splicing variants of the ABCC5 gene, consequently named ABCC5_SV1 (SV1), ABCC5_SV2 (SV2) and ABCC5_SV3 (SV3).These isoforms comprise the first five exons of ABCC5 and additional novel exons named 5a, 5b and 5c, generated by differential exon usage. The determined lengths of the three transcripts are 2039 bp, 1962 bp, and 1887 bp in size, respectively. RT-PCR, real-time PCR and Northern blot analysis of ABCC5 as well as the isoforms SV1, SV2 and SV3demonstrated high levels of expression for all transcripts in the retina compared to other tissues. Analysis of their nucleotide sequences revealed that inclusion of exon 5a in splicing variant SV1 produced a frame shift and premature termination codon (PTC). Our data show that this splice variant is the target of nonsense mediated mRNA decay (NMD). This was shown by inhibition of protein synthesis with antibiotics puromycin and anisomycin in human cell lines A-RPE 19 and Y79. Our analysis resulted in an increase of the PTC containing transcript and a decrease of the ABCC5 transcript. Conversely, the amount of both transcripts (SV1 and ABCC5) returned to pre-treatment levels after removal of the inhibitors. Together, our results suggest that alternative splicing of the ubiquitously expressed ABCC5 gene in addition to NMD is involved in retina-specific transcriptional regulation of the mRNA level of ABCC5. In contrast, additional experiments demonstrated that the levels of expression ofSV2 and SV3 isoforms do not appear to influence ABCC5 transcription. Several of the cloned genes were selected for additional genotyping of single nucleotide polymorphisms (SNPs) in order to construct their SNP maps which are going to be used for future association studies of complex disease AMD. Thus, identification of novel retinal genes and their functional characterization will further our elucidation of retinal physiology in general and in the diseased state in particular, by providing candidate retinal disease genes.
In this PhD thesis, we develop models for the numerical simulation of epitaxial crystal growth, as realized, e.g., in molecular beam epitaxy (MBE). The basic idea is to use a discrete lattice gas representation of the crystal structure, and to apply kinetic Monte Carlo (KMC) simulations for the description of the growth dynamics. The main advantage of the KMC approach is the possibility to account for atomistic details and at the same time cover MBE relevant time scales in the simulation. In chapter 1, we describe the principles of MBE, pointing out relevant physical processes and the influence of experimental control parameters. We discuss various methods used in the theoretical description of epitaxial growth. Subsequently, the underlying concepts of the KMC method and the lattice gas approach are presented. Important aspects concerning the design of a lattice gas model are considered, e.g. the solid-on-solid approximation or the choice of an appropriate lattice topology. A key element of any KMC simulation is the selection of allowed events and the evaluation of Arrhenius rates for thermally activated processes. We discuss simplifying schemes that are used to approximate the corresponding energy barriers if detailed knowledge about the barriers is not available. Finally, the efficient implementation of the MC kinetics using a rejection-free algorithm is described. In chapter 2, we present a solid-on-solid lattice gas model which aims at the description of II-VI(001) semiconductor surfaces like CdTe(001). The model accounts for the zincblende structure and the relevant surface reconstructions of Cd- and Te-terminated surfaces. Particles at the surface interact via anisotropic nearest and next nearest neighbor interactions, whereas interactions in the bulk are isotropic. The anisotropic surface interactions reflect known properties of CdTe(001) like the small energy difference between the c(2x2) and (2x1) vacancy structures of Cd-terminated surfaces. A key element of the model is the presence of additional Te atoms in a weakly bound Te* state, which is motivated by experimental observations of Te coverages exceeding one monolayer at low temperatures and high Te fluxes. The true mechanism of binding excess Te to the surface is still unclear. Here, we use a mean-field approach assuming a Te* reservoir with limited occupation. In chapter 3, we perform KMC simulations of atomic layer epitaxy (ALE) of CdTe(001). We study the self-regulation of the ALE growth rate and demonstrate how the interplay of the Te* reservoir occupation with the surface kinetics results in two different regimes: at high temperatures the growth rate is limited to one half layer of CdTe per ALE cycle, whereas at low enough temperatures each cycle adds a complete layer. The temperature where the transition between the two regimes occurs depends mainly on the particle fluxes. The temperature dependence of the growth rate and the flux dependence of the transition temperature are in good qualitative agreement with experimental results. Comparing the macroscopic activation energy for Te* desorption in our model with experimental values we find semiquantitative agreement. In chapter 4, we study the formation of nanostructures with alternating stripes during submonolayer heteroepitaxy of two different adsorbate species on a given substrate. We evaluate the influence of two mechanisms: kinetic segregation due to chemically induced diffusion barriers, and strain relaxation by alternating arrangement of the adsorbate species. KMC simulations of a simple cubic lattice gas with weak inter-species binding energy show that kinetic effects are sufficient to account for stripe formation during growth. The dependence of the stripe width on control parameters is investigated. We find an Arrhenius temperature dependence, in agreement with experimental investigations of phase separation in binary or ternary material systems. Canonical MC simulations show that the observed stripes are not stable under equilibrium conditions: the adsorbate species separate into very large domains. Off-lattice simulations which account for the lattice misfit of the involved particle species show that, under equilibrium conditions, the competition between binding and strain energy results in regular stripe patterns with a well-defined width depending on both misfit and binding energies. In KMC simulations, the stripe-formation and the experimentally reported ramification of adsorbate islands are reproduced. To clarify the origin of the island ramification, we investigate an enhanced lattice gas model whose parameters are fitted to match characteristic off-lattice diffusion barriers. The simulation results show that a satisfactory explanation of experimental observations within the lattice gas framework requires a detailed incorporation of long-range elastic interactions. In the appendix we discuss supplementary topics related to the lattice gas simulations in chapter 4.
The subject of this thesis was the cloning and the initial biochemical and functional characterisation of novel human proteins with an N-terminal Ena-VASP homology (EVH)-1 domain and a C-terminal Sprouty homologous region (SPR), which are related to the Drosophila AE33 protein. During the course of this work, three mouse homologues of the AE33 fly protein have been reported and termed Sprouty-related protein with an EVH-1 domain 1, 2 and 3 (Spred-1, -2, -3)(Wakioka et al, 2001; Kato et al, 2003). Spred-1, -2 and -3 are membrane associated substrates of receptor tyrosine kinases and they act as negative regulators of the Ras pathway during growth factor stimulation. As the Spred-family members seem to exert similar functions, the specific function of each member remains enigmatic. Therefore, we investigated the mRNA and protein expression patterns of the two murine protein family members Spred-1 and Spred-2 on the whole organ level. Furthermore, we focussed on the cellular localisation and the role of human and murine Spred-2 in the organism. The expression patterns of Spred-1 and Spred-2 differed markedly among various tissues and cell types. In mouse, Spred-1 is abundantly expressed in adult brain, cerebellum, and fetal tissues, whereas Spred-2 was ubiquitously expressed. In humans, Spred-2 was found to be strongly expressed in glandular epithelia and in invasive cytotrophoblasts, and at the subcellular level its immunoreactivity was associated with secretory vesicles and was found to colocalise with Rab11 GTPase. The new human Spred gene family was investigated in detail. Cloning of the fulllength form of human Spred-2 resulted in an 1254 bp coding sequence, corresponding to a 418 amino-acids protein. Immunoblotting with a set of affinitypurified antibodies confirmed the expression of a 47 kDa protein and suggested the presence of additional differently sized variants. Cloning of various shortened Spred- 2 mRNAs and identification of 2 additional human Spred genes (localised on different chromosomes) with their respective EST (expressed sequence tag) revealed that the new human Spred gene family displays extensive splicing, leading to the generation of short and long Spred proteins. All protein isoforms and splicing variants contain an EVH1-domain located at the N-terminus of the protein. The full-length forms (“a” forms) comprised the SPR, another functional domain localised at the C-terminus whereas the short variants (Spred-1b, 2 c-e, 3 c) lack the entire C-terminal SPR domain or part of it. The existence of short and long splicing variants of Spred-1, -2 and -3 revealed a common principle of organisation and splicing pattern in the Spred family. Functional analyses of the 5 cloned Spred-2 splicing variants revealed differential subcellular localisation and differential regulation of serum- and EGF- mediated ERK activation in HEK-293 cells. Taken together, these results indicate a highly specific expression pattern of Spred-1 and Spred-2 in various tissues suggesting a specific physiological role for the individual Spred isoform in these tissues. For example, Spred-2 appears to be involved in regulating secretory pathways. Furthermore, the human Spred family contains three genes, which are subject to extensive alternative splicing resulting in at least 8 different proteins with differential subcellular localisation and differential regulatory potential of the MAPK pathways during growth factor stimulation.
In this work a new algorithm to determine quantum control fields from the instantaneous response of systems has been developed. The derived fields allow to establish a direct connection between the applied perturbation and the molecular dynamics. The principle is most easily illustrated in regarding a classical forced oscillator. A particle moving inside the respective potential is accelerated if an external field is applied acting in the same direction as its momentum (heating). In contrary, a deceleration is achieved by a field acting in the opposite direction as the momentum (cooling). Furthermore, when the particle reaches a classical turning point and then changes its direction, the sign of the field has to be changed to further drive the system in the desired way. The frequency of the field therefore is in resonance with the oscillator. This intuitively clear picture of a driven classical oscillator can be used for directing (or controlling) quantum mechanical wave packet motion. The efficiency of the instantaneous dynamics algorithm was demonstrated in treating various model problems, the population transfer in double well potentials, excitation and dissociation of selective modes, and the population transfer between electronic states. Although it was not tried to optimize the fields to gain higher yields, the control was found to be very efficient. Driving population transfer in a double well potential could be shown to take place with nearly 100% efficiency. It was shown that selective dissociation within the electronic ground state of HOD can be performed by either maximizing a selected coordinate's differential momentum change or the energy absorption. Concerning the population transfer into excited electronic states, a direct comparison with common control algorithms as optimal control theory and genetic algorithms was accomplished using a one-dimensional representation of methyl iodide. The fields derived from the various control theories were effective in transferring population into the chosen target state but the underlying physical background of the derived optimal fields was not obvious to explain. The instantaneous dynamics algorithm allowed to establish a direct relation between the derived fields and the underlying molecular dynamics. Bound-to-bound transitions could be handled more effectively. This was demonstrated on the sodium dimer in a representation of 3 electronic states being initially in its vibronic ground state. The objective was to transfer population into a predefined excited state. Choosing the first or the second state as a target, the control fields exhibited quite different features. The pulse-structure is related to the excited state wave packet, moving in, and out of the Franck-Condon region. Changing the control objective, the derived control field performed pure electronic transitions on a fast time-scale via a two-step transition. Futhermore, orientational effects have been investigated. The overall-efficiency of the population transfer for differently oriented molecules was about 70 % or more if applying a control field derived for a 45° orientation. Spectroscopic methods to gain information about the outcome of the control process have been investigated. It was shown that pump/probe femtosecond ionization spectroscopy is suited to monitor time-dependent molecular probability distributions. In particular, time-dependent photoelectron spectra are able to monitor the population in the various electronic states. In the last chapter a different possibility of controlling molecules was regarded by investigating molecular iodine with a setup similar to the STIRAP (“Stimulated Raman Adiabatic passage”) scenario. The possibility to extend this technique to a fs-time scale was examined in theory as well as in experiments, the latter being performed by Dr. Torsten Siebert in the Kiefer group, University of Würzburg. It was shown that off-resonant excitation with implementation of the pulses with a higher intensity of the Stokes pulse as compared to the pump pulse - describing a so-called f-STIRAP like configuration - was shown to effectively transfer population into excited ground-state vibrational levels. This was theoretically underlined by comparing the numerically exact coupling case with the adiabatic picture. The process was described to run in the vicinity of adibaticity. A new model explaining the process by the system's vector rotating around the dressed state vector will be adopted in future calculations. Altogether, a new promising algorithm to control dynamical processes based on the instantaneous response has been developed. Because the derived control fields have been shown to be very efficient in selectively influencing molecules, it is to be expected that farther reaching applications can be realized in future investigations.
Neuromelanin (NM) is a complex polymer pigment found in catecholaminergic neurons of the human substantia nigra and locus ceruleus. The structure of this molecule is poorly characterised, and the physiological function of it in the brain is unknown. In vitro data, based upon synthetic dopamine melanins (DAM), suggest that these pigments may exhibit radical scavenging properties, but in the presence of iron, DAM acts as a proxidant. These data suggested that NM may be associated with the especial vulnerability of pigmented dopaminergic cells in Parkinson´s disease (PD), a disorder in which nigral iron levels are increased and the relatively specific loss of the pigmented neurons of the substantia nigra. Given the rarity of NM, and the difficulty of isolating this material from the human brain, all functional studies of NM published to date have utilised a synthetic dopamine melanin in place of the native pigment. In the current work we investigated the effects of NM from the healthy human brain and synthetic DAM on cell health and oxidative status in human-derived cell lines. Methods SK-N-SH, a human neuroblastoma cell line, and U 373, a human glioblastoma cell line was chosen to represent human neuronal and glial cell types. NM was isolated from the SN of adult human subjects from Australia and Germany with no history of neurological or neurodegenerative diseases. Synthetic DAM was prepared by autooxidation of dopamine. DAM and NM samples were added to the cultures with fresh media to final concentrations of 0.05 or 0.1 mg/ml. In some experiments cells were incubated with Fenton reagent (400µM FeSO4 plus 200µM H2O2) in the presence or absence of melanin or the iron chelator desferoxamine mesylate (100µM). The cells were incubated at 37 °C at 5% CO2 for varying periods of time as described. Lactate dehydrogenase (LDH) activity and Lipid peroxidation were measured. Hydroxyl radical production in the cultures was estimated used a modification of the salicylic acid spin-trapping method. All experiments were performed three times in triplicate and analysed using regression analysis and one- or two-way Analysis of Variance followed by Bonferroni’s t test corrected for multiple comparisons as appropriate. Results Following 24 hr incubation, both the native NM and the synthetic DAM pigment could be seen as electron dense granules both within the cell bodies of the SK-N-SH and U373 cells. The melanin was incorporated into the cell via an invagination of the cell membrane. DAM but not NM significantly increased the LDH activity and lipid peroxidation as well as the hydroxyl radical production. Co-incubation of Fenton reagent with either DAM or NM resulted in additive effects, compared to the levels elicited by Fenton reagent and the melanins alone. When added the iron chelator desferoximine together with Fenton reagent attentuated lipid peroxidation and hydroxyl radical production to control levels. In contrast, lipid peroxidation and hydroxyl radical production in U373 cells exposed to NM or DAM did not differ to that measured in untreated cells. Discussion Human neuron-derived cell line is a useful approach to address the effects of NM on dopaminergic neuron function. This is the first work to use internalised NM isolated from the healthy human brain as a model of intraneuronal pigment in vitro. Cell line functional studies showing cellular changes induced by DAM but not NM demonstrated that DAM is relatively toxic to cells but not NM. DAM represents a poor functional model of NM in that it displays a marked toxicity unrepresentative of the effects of the native melanin. Both NM and DAM were unable to attentuate the toxic effects of the added oxidative stimulus, this probably due to the exceeding the chelating capacity of NM. Future studies should point to the characterization and role of NM under in vivo conditions. The development of strategies to protect the neuromelanin in dopaminergic neurons may have important therapeutic implications not only for PD.
BMPs influence a variety of cellular processes. They have been shown to regulate proliferation, differentiation, migration and apoptosis and thus play central roles during developmental processes and tissue homeostasis. Ligand mediated signal transduction is transmitted via BMP type I and BMP type II receptors, both members of the serine/threonine kinase superfamily. The BMP receptor mediated signal transduction is not explored in detail. Therefore our aim was to address different aspects of BMP mediated signal transduction with main focus on BRII and its regulation. Due to the existence of two alternative splice variants, a long and a short form, the function of the two variants and the impact of the C-terminal extension are of general interest. Moreover, mutations in the BMPR2 gene were identified to be responsible for PPH, a autosomal dominant lung disease. In this thesis, BRII phosphorylation and signalling mediated by different receptor oligomers were investigated and multiple BRII associated proteins were identified. We could show that the oligomerization pattern of BMP receptors exhibits a higher degree of flexibility compared to other receptors of that superfamily. In the present work the BMP2 mediated signal transduction should be examined, depending on the receptor oligomerization pattern. Using kinase-deficient mutants, it could be demonstrated, that signalling via preformed BMP receptor complexes is mediated by the well characterized Smad1/5/8 pathway, whereas signalling initiated by BMP2 induced recruitment of the receptors activates the p38 pathway and leads to Alkaline Phosphatase production. To further study signalling events triggered directly from the BRII a proteomics-based screen for BRII associated proteins was performed. 53 associated proteins were found, the majority being signal transducing molecules, but in addition metabolic proteins, transcriptional regulators and others were identified. These proteins enable to gain a deeper insight in BMP mediated signalling. One of the interactors, the receptor tyrosine kinase c-kit, was characterized in more detail. It could be demonstrated, that BRII and c-kit form a complex in vitro and in vivo, and the interaction is enhanced upon BMP2 stimulation. 2D phosphopeptid mapping showed that BRII is phosphorylated at S757 upon activation of c-kit by SCF. Moreover, c-kit and its ligand SCF are modulating BMP2 pathways, by enhancing Smad1/5 phosphorylation, Smad-transcriptional activity, Alkaline Phosphatase production and expression of Cbfa1. All these pathways hint towards modulation of the osteoblast development via c-kit. Thus, we were able to develop a novel paradigm for the BMP2 meditated signalling. One of the initial triggers for BRII is the auto-phosphorylation of BRII. Here we analyze ligand-independent as well as ligand-dependent phosphorylation of BRII. Some phosphorylation sites in BRII were identified. The general phosphorylation occurs mostly on serines. S815, S818 and Y825 are identified targets of phosphorylation whose function is still unclear. However phosphorylation of S336 is demonstrated to be essential for BRII activation. The elucidation of BMP receptor phosphorylation and oligomerization as well as the impact of a number of BRII associated proteins (such as c-kit), demonstrated in this thesis that BMP signalling has to be regulated precisely on multiple levels. This can be useful for the development of selective signalling inhibitors for basic research and therapeutic approaches of PPH and other diseases.
In the present thesis, two projects on the use of microarray technology for molecular epidemiology of Neisseria meningitidis have been followed. The first one evaluated microarrays based on polymorphism-directed oligonucleotide design for typing of N. meningitidis adopting the multilocus sequence typing (MLST) concept. The number of oligonucleotides needed to cover all known polymorphisms was much lower compared to the number needed if a tiling strategy would have been chosen. Initial experiments using oligonucleotides 28-32 nucleotides in length, revealed that the applied hybridisation protocols were highly specific. However, despite of several optimisation steps, the rate of misidentification of oligonucleotides remained >1.8% in consecutive validation experiments using arrays representing the genetic diversity at three MLST loci. This finding led to the assumption that the high density of polymorphic sites and extensive GC-content variations at N. meningitidis MLST loci hindered the successful implementation of MLST microarrays based on polymorphism-directed oligonucleotide design. In the 1980s, the ET-15 clone emerged within the ST-11 complex of N. meningitidis. This new clone was associated with severe meningococcal disease and outbreaks world-wide. Therefore, the goal of the second project was to identify genetic differences between ET-15 strains and other ST-11 strains using whole genome microarray technology. Three genes encoding hypothetical proteins were identified to be present in all ET-15 strains but absent in other ST-11 strains. This finding together with unpublished observation from our group suggested that several genome alterations occurred before the clonal expansion of the ET-15 clone started. The role that these three genes play in the pathogenicity of the ET-15 clone is unclear. The genome comparisons revealed furthermore that studies of the ET-15 clone displayed approximately two-fold less gene content variation than ST-11 strains not belonging to the ET-15 clone. This finding is in accordance with the recent emergence and clonal expansion of the ET-15 variant.
This thesis contains two major parts: The first part introduces the reader into three independent concepts of treating strongly correlated many body physics. These are, on the analytical side the SO(5)-theory (Chap.3), which poses the general frame. On the numerical side these are the Stochastic Series Expansion (SSE) (Chap.1) and the Contractor Renormalization Group (CORE) approach (Chap. 2}). The central idea of this thesis was to combine these above concepts, in order to achieve a better understanding of the high-T_c superconductors (HTSC). The results obtained by this combination can be found in the second major part of this thesis (chapters 4 and 5). The main idea of this thesis, i.e., to combine the SO(5)-theory with the capabilities of bosonic Quantum-Monte Carlo simulations and those of the CORE approach, has been proven to be a very successful Ansatz. Two different approaches, one based on symmetry and one on renormalization-group arguments, motivate an effective bosonic Hamiltonian. In a subsequent step the effective Hamiltonian has been simulated efficiently using the SSE. The results reproduce salient experiments on high-T_c superconductors. In addition, it has been shown that the model can be extended to capture also charge ordering. These results also form a profound basis for further studies, for example one could address the open question of SO(5)-symmetry restoration at a multicritical point in the extended pSO(5) model, where longer ranged interactions are included.
To analyze the role of protein kinase B(PKB)on developmental and functional aspects of T cells, we have generated transgenic mouse lines expressing a constitutively active form of PKB (myrPKB) in early stages of T cell development.Peripheral CD4+ T cells from PKB tg mice are hyperreactive, more efficient in producing th1 and th2 cytokines and show faster and CD28 co-stimulation independent cell cycle progression.Interestingly PKB tg T cells are resistant to CsA treatment in proliferation and cytokine production.Further analysis show PKB tg CD4+ T cells have a drastically reduced nuclear translocation of NFAT proteins and this is due to a direct interaction between PKB and NFAT. To study whether the negative regulatiopn of NFATs by PKB affects T cell development, we analyzed double tg mice expressing both, a constitutively active version of calcineurin (dCam) and myrPKB. dCam tg mice have a severe block in thymocyte development at the DN3 stage.But in the dCam/PKB double tg mice this developmental block is significantly rescued.This rescue of thymocyte development by PKB is due to the expression of RAG1 and subsequent TCRb chain expression. CsA treatment of neonatal thymic lobes from dCam mice restores normal thymocyte development, indicating involvement of NFATs in the severe block in dCam thymocyte development.Confocal studies clearly established that compared to dCam DN cells there is a significant reduction in the nuclear levels of NFATc1 and NFATc3 in dCam/PKB cells.Downregulation of nuclear NFAT levels by myrPKB thus seems to be an essential parameter in dCam cells to proceed with normal differentiation. In summary, the data from PKB tg peripheral CD4+ T cells and dCam/PKB double tg thymocytes clearly establish PKB as an important modulator of T cell development and function and PKB as a novel negative regulator of NFAT activation.
The hoatzin (Opisthocomus hoazin) is an enigmatic bird that lives in the riparian lowlands of northern South America. Among its peculiar attributes are 1) microbial foregut fermentation, unique in birds, to convert plant cellulose in the foliage which it consumes into simple sugars, 2) an ongoing debate about the puzzling taxonomic position, although a relationship to the Cuculiformes appears likely, 3) adaptive wing claws in the young which are used for climbing, and 4) co-operative breeding behaviour. Despite the information available on digestive mode and taxonomy little has been published on its breeding biology and behaviour and until now almost all knowledge was based on a study in the savannah of Venezuela. This is the first detailed study of the hoatzin’s nesting ecology in a rainforest habitat. From 1995-1998 and in 2000 I monitored a hoatzin population which consisted of approximately 700 individuals in an Amazonian rainforest in Ecuador situated in the Cuyabeno Wildlife Reserve (between 0°02’ N, 76°0’ W, 0°03’ S, and 76°14’ W). The area is composed of various black water lagoons and small rivers, flooded forests and terra firme forest. Primarily, I examined group composition and breeding pattern and success related to traits such as clutch and egg size, offspring sex ratio and the number of parents involved in a common breeding attempt. Apart from standardised observations and monitoring I took blood samples from chicks, which were later used for molecular sexing and for DNA fingerprints. Food plants were collected and determined and a rough habitat mapping was conducted. Since the impacts of boat tourism in the area became apparent I investigated the interactions of adult and young hoatzins with tourists and measured the plasma concentration of the hormone corticosterone in chicks as an indicator of stress. Each chapter has its own introduction to the specific topic and can be read independently. The main findings of this study are: The reproduction of the hoatzin was timed strictly following the bimodal rainy pattern in the area. There was only one breeding attempt per year. Only 18% of breeding attempts ended successfully with at least one fledgling. Incubation started with the first egg laid and led to hatching asynchrony. In most cases only the A-chick survived and there is evidence for a brood reduction strategy. I observed egg size variation patterns both within the clutches and between the clutches. Approximately 80% of breeding attempts were carried out with auxiliaries. Units with alloparentals had a higher breeding success than single pairs. The results indicate a trade-off between helping and group size. DNA band-sharing comparisons revealed the existence of joint-nests, where several females laid their eggs in one single nest. The clutches of these joint-nests suffered severe egg loss during all stages of incubation. Breeding success did not differ between single- and joint-nests. The primary offspring sex ratio was biased towards daughters. There was no differential mortality between the sexes until fledging. Individual breeding units employed an adaptive production of offspring of each sex according to their current group size. Rainforest tourism negatively influenced the survival and growth of young, not yet fledged hoatzins. In addition tourist-exposed young showed a stronger hormonal stress response than their conspecifics from undisturbed sites. In contrast, breeding adults appear to have habituated to tourist boats and exposure to observers.
The bacteriophage Lambda is a virus which infects bacteria carrying LamB protein in their outer membrane. GpJ, a protein of the tail of the phage, is involved in the binding to LamB. The study of the interaction between GpJ expressed as fusion protein and LamB was performed in order to investigate the interaction between the bacteriophage Lambda and LamB. The fusion proteins are called MBP-gpJ and His-gpJ. MBP-gpJ is a chimeric protein representing Maltose Binding Protein connected to the Cterminal part of the GpJ protein (residue 684 until 1132), graciously given by Pr. Charbit (Paris, France). MBP-gpJ, expressed in E.coli and purified, bound to the exoplasmic side of LamB and LamB variants in planar lipid bilayer experiments and allowed a complete and reversible blockage of LamB channels. In order to obtain data about the binding of the GpJ fragment alone to LamB, an other fusion protein without MBP was created, called His-gpJ. His-gpJ is the C-terminal part of GpJ (684-1132) in fusion with a 6×Histidine-tag, produced as insoluble form in E.coli. After renaturation, a soluble protein can be obtained. Without MBP, the GpJ fragment still bound to LamB in planar lipid bilayer experiments, but did not block significantly its channels, as previously observed after addition of MBP-gpJ. The interaction between His-gpJ and LamB or LamB mutants was also demonstrated on SDSPAGE and immunodetection by the presence of high molecular mass bands. Furthermore, the use of variants of lamB allowed to demonstrate that the C-terminal fragment of GpJ does not bind to the same area on the surface of LamB than GpJ involved in the tail of the Lambda phage.
This study investigates the abundance and geographic distribution of the hawkmoth species (Lepidoptera: Sphingidae) of Southeast-Asia and analyses the resulting patterns of biodiversity, biogeography and macroecology. Data on the distribution of species were retrieved from published and unpublished faunal lists and museum collections (in close cooperation with the Natural History Museum, London). Over 34,500 records of the global distribution of the 380 species that occur in Southeast-Asia (including New Guinea and the Solomon Islands) were used for a GIS-supported estimate of distributional ranges, which can be accessed at http://www.sphingidae-sea.biozentrum.uni-wuerzburg.de, an Internet site that also provides pictures of the species and checklists for 114 islands of the Malesian region. The abundance of species in local assemblages was assessed from nightly collections at artificial light sources. Using a compilation of own samples as well as published and unpublished data from other sources, local abundance data on 93 sites were used for analysis, covering 159 species or 17,676 specimens.
According to the hygiene hypothesis, the exposure to infectious agents in early childhood prevents the development of allergen-specific Th2 immune responses because it establishes Th1-based immunity or alternatively, induces the generation of T regulatory cells. Based on this theory, the present study pretended to identify promising microorganism-derived vaccine candidates against allergic asthma in the murine model. In the first part of this work, the efficacy of four different known Th1-inducing adjuvants, i.e. live BCG, heat-killed BCG, CpG and PPD, as components of vaccines aimed at inhibiting allergic asthma was compared. All the adjuvants were effective in inhibiting the development of allergen-induced airway eosinophilia, mucus production, and with the exception of PPD also airway hyperreactivity (AHR), when they were applied together with OVA/alum. Suppression of airway eosinophilia was not observed in IFN-gamma- or IL-12-deficient mice (hk-BCG, CpG-ODN and PPD). Interestingly, live BCG was still able to suppress allergen-induced Th2 responses in the absence of either IFN-gamma or IL-12. The effect of live BCG was also independent on IL-10-, TLR-2-, TLR-4- or MyD88-mediated signaling. When mice vaccinated with the different adjuvants together with OVA/alum were subjected to a second period of OVA/alum immunization, only live and hk-BCG were able to efficiently suppress the development of airway inflammation. This effect could be adoptively transferred by CD4+ T cells. Taken together our data suggest that live BCG>>hk-BCG>CpG>PPD are effective in suppressing allergen-induced Th2 responses. Secondly, the evaluation of a dendritic cell-based vaccination strategy leading to the induction of allergen-specific Th1 cells to protect against the development of allergen-specific Th2 responses was performed. The application of OVA-pulsed BM-DC maturated with CpG was unable to reduce airway eosinophilia and inflammation in OVA-immunized mice. OVA-specific IgG1 or IgE serum levels were also not reduced. The experiments using LC pulsed with OVA yielded similar results. However, the mice vaccinated with CpG/OVA pulsed BM-DC had greatly enhanced levels of OVA-specific IgG2a in the serum, suggesting the induction of allergen-specific Th1 responses in vivo. Thus, these data suggest that the vaccination of mice with OVA-pulsed BM-DC matured with CpG or OVA-pulsed LC did not result in a reduction of allergen-specific Th2 responses in a murine model of severe atopic asthma. Lastly, NES, an excretory/secretory product derived from the helminth Nippostrongylus brasiliensis was evaluated as a new potential adjuvant to prevent the development of allergic responses. The application of NES together with OVA/alum greatly inhibited the development of airway eosinophilia, airway goblet cell metaplasia and mucus production and the development of airway hyperreactivity after metacholine challenge. Furthermore, OVA-specific IgG1 and IgE levels in the serum were also strongly reduced. NES preparations contained small amounts of endotoxin, which may explain these results. However, the suppressive effects of NES on the development of allergen-specific Th2 responses was independent upon IFN-gamma or TLR-4 and still observed in mice treated with LPS-depleted NES. NES reduced OVA-induced Th2 responses also in a IL-10-independent manner. In addition, the digestion with proteinase K or the heat-treatment of NES did not abolish its ability to inhibit allergen-induced Th2 responses. Interestingly, NES suppress OVA-specific Th2 responses in vivo in the presence of a strong NES-specific Th2 environment. Taken together our results suggest that the helminth N. brasiliensis secretes substances which interfere with the development of allergic Th2 responses. In summary, distinct substances derived from microorganisms or helminths which may be used as potential adjuvants to prevent the development of allergic Th2 responses were identified. These findings contribute to the design of efficient vaccines protecting humans from developing allergic asthma.
We examined the regulation of NFATc1 in different lymphomas and observed an inversed correlation between the methylation status and expression of NFATc1. Our data demonstrate that aberrant DNA methylation associated with chromatin remodeling within nfatc1 locus is a major mechanism for the repression of NFATc1 expression, suggesting that the DNA methylation-mediated transcriptional silencing of NFATc1 may be a critical event in the tumorogenesis of ALCLs and cHLs. Furthermore, the DNA methylation of human nfatc1 promoter region could be used as a novel biomarker of tumor progression. Our results indicate a close link between the loss of immunoreceptor signaling and NFATc1 expression in human lymphomas. For both ALCLs and cHLs, defects in immunoreceptor signaling have been described which result in a loss of receptor-mediated gene expression programs (Schwering et al., 2003; Bonzheim et al., 2004; Marafioti et al., 2004). In T cells, one indicator gene of these programs appears to be the nfatc1 gene whose expression is controlled by TCR signals (Chuvpilo et al., 2002a). In contrast, in T cells NFATc1 expression is unaffected by TCR signals, and NFATc2 was found to be expressed at normal levels in ALCLs and cHLs (L.K., unpubl. data). Moreover, the activity of NF-kappaB factors which can bind to certain NFAT binding sites and share a distantly-related DNA binding domain with NFATs is strongly elevated in cHL cells (Bargou et al., 1997; Hinz et al., 2001; Hinz et al., 2002) suggesting that NFATs and NF-kappaBs exert very different effects on generation and maintenance of Hodgkin’s lymhomas. However, it should be mentioned that in Burkitt’s and further B cell lymphomas in which NFATc1 proteins are strongly expressed and controlled by receptor signals (Kondo et al., 2003), they could exert a promoting function in tumor development. The genes of p53 family members p63 and p73 are prominent examples for mammalian genes whose products can act both as oncoproteins and tumor suppressor genes (Hibi et al., 2000; Stiewe and Putzer, 2002), and it is likely that more genes exist which encode both tumor suppressors and oncoproteins. It remains to be shown whether the nfatc1 gene is one of them.
In this thesis we analyze CP violating effects of MSSM phases in production and two-body decays of neutralinos, charginos and sfermions. For different supersymmetric processes we define and calculate CP-odd asymmetries, which base on triple products. We present numerical results for electron-positron collisions at a future linear collider with a center of mass energy of 500-800 GeV, high luminosity and longitudinally polarized beams.
In this work, we studied in great detail how the unknown parameters of the SUSY seesaw model can be determined from measurements of observables at or below collider energies, namely rare flavor violating decays of leptons, slepton pair production processes at linear colliders and slepton mass differences. This is a challenging task as there is an intricate dependence of the observables on the unknown seesaw, light neutrino and mSUGRA parameters. In order to separate these different influences, we first considered two classes of seesaw models, namely quasi-degenerate and strongly hierarchical right-handed neutrinos. As a generalisation, we presented a method that can be used to reconstruct the high energy seesaw parameters, among them the heavy right-handed neutrino masses, from low energy observables alone.