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This thesis is divided into three parts with the main goal allocating novel antimicrobial compounds that could be used as future antibiotics. The first part aimed to evaluate the potential of plant suspension cultures for the production of antimicrobial proteins. The extracellular, intracellular and cell wall bound fractions of seven heterotrophic and photomixotrophic plant cell suspension cultures treated with nine different elicitors were tested for the elicitor dependent production of antimicrobial proteins. Bioactivities were tested against a selected panel of human isolates including Gram-positive and Gram-negative bacteria as well as fungi using the disc diffusion assay. The intracellular fractions of elicited cell cultures were more active than extracellular fractions while the cell wall bound fractions showed lowest activities. Among the 21 fractions tested, the intracellular fraction of Lavendula angustifolia elicited with DC3000 was most active against Candida maltosa. The second most active fraction was the intracellular fraction of Arabidopsis thaliana elicited with salicylic acid which was moreover active against all test strains. The antimicrobial activity of elicited Arabidopsis thaliana cell cultures was tested by bioautography to locate the antimicrobial proteins in the crude extract. The intracellular fraction of photomixotrophic Arabidopsis thaliana cells elicited with salicylic acid was selected for further gel filtration chromatography on S-200 column leading to the purification of one 19 kDa antimicrobially active protein, designated, AtAMP. Our findings suggest that elicited plant cell cultures may present a new promising alternative source of antimicrobial proteins. The second part comprises the isolation of actinomycetes associated with marine sponges and testing the bioactivities of new species for further investigations. Actinobacterial communities of eleven taxonomically different sponges that had been collected from offshore Ras Mohamed (Egypt) and from Rovinj (Croatia) were investigated by a culture-based approach using different standard media for isolation of actinomycetes and media enriched with aqueous sponge extract to target rare and new actinomycete species. Phylogenetic characterization of 52 representative isolates out of 90 based on almost complete sequences of genes encoding 16S rRNA supported their assignment to 18 different actinomycete genera. Altogether 14 putatively new species were identified based on sequence similarity values below 98.2% to other strains in the NCBI database. The use of M1 agar amended with aqueous sponge extract yielded a putative new genus related to Rubrobacter which highlighting the need for innovative cultivation protocols. Biological activity testing showed that five isolates were active against Gram-positives only, one isolate was active against Candida albicans only and one isolate showed activity against both groups of pathogens. Moreover, the antiparasistic activity was documented for four isolates. These results showed a high diversity of actinomycetes associated with marine sponges as well as highlighted their potential to produce anti-infective agents. The third part of the thesis focused on the isolation and structure elucidation of new bioactive compounds. Streptomyces strain RV15 recovered from sponge Dysidea tupha, was selected for further chemical analysis by virtue of the fact that it exhibited the greatest antimicrobial potential against Staphylococcus aureus as well as Candida albicans among the all tested strains. Moreover, members of the genus Streptomyces are well known as prolific producers of interesting pharmacologically active metabolites. Chemical analysis of the methanolic crude extract using different chromatographic tools yielded four new compounds. The structures of the new compounds were spectroscopically elucidated to be four new cyclic peptides, namely, cyclodysidins A-D. Their bioactivity was tested against different proteases, bacteria and Candida as well as tumor cell lines. The compounds did not show any significant activities at this point.
Malaria still persists as one of the deadliest infectious disease in addition to AIDS and tuberculosis. lt is a leading cause of high mortality and morbidity rates in the developing world despite of groundbreaking research on global eradication of the disease initiated by WHO, about half a century ago. Lack of a commercially available vaccine and rapid spread of drug resistance have hampered the attempts of extinguishing malaria, which still leads to an annual death toll of about one million people. Resistance to anti-malarial compounds thus renders search for new target proteins imperative. The kinome of the human malaria parasite Plasmodium falciparum comprises representatives of most eukaryotic protein kinase groups, including kinases which regulate proliferation and differentiation processes. Several reports till date have suggested involvement of parasite kinases in the human host and as well as in the mosquito vector. Kinases essential for life cycle stages of the parasite represent promising targets for anti-malarial compounds thus, provoking characterization of additional malarial kinases. Despite extensive research on most plasmodial enzymes, very little information is available regarding the four identified members of the cyclin dependent kinase like kinase (CLK) family. Thus, the present thesis dealt with the functional characterization of four members of the PfCLK kinase family of the parasite denoted as PfCLK-1/Lammer, PfCLK-2, PfCLK-3 and PfCLK-4 with a special focus on the first two kinases. Additionally, one Ca2+/Calmodulin dependent putative kinase-related protein, PfPKRP, presumed to be involved in sexual stage development of the parasite, was investigated for its expression in the life cycle of the parasite. In other eukaryotes, CLK kinases regulate mRNA splicing through phosphorylation of Serine/Arginine-rich proteins. Transcription analysis revealed abundance of PfCLK kinase genes throughout the asexual blood stages and in gametocytes. By reverse genetics approach it was demonstrated that all four kinases are essential for completion of the asexual replication cycle of P. falciparum. PfCLK 1/Lammer possesses two nuclear localization signals and PfCLK-2 possesses one of these signals upstream of the C-terminal catalytic domains. Protein level expression and sub-cellular localization of the two kinases was determined by generation of antiserum directed against the kinase domains of the respective kinase. Indirect immunofluorescence, Western blot and electron microscopy data confirm that the kinases are primarily localized in the parasite nucleus, and in vitro assays show that both enzymes are associated with phosphorylation activity. Finally, mass spectrometric analysis of co immunoprecipitated proteins shows interactions of the two PfCLK kinases with proteins, which have putative nuclease, phosphatase or helicase functions. PfPKRP on the other hand is predominantly expressed during gametocyte differentiation as identified from transcriptional analysis. Antiserum directed against the catalytic domain of PfPKRP detected the protein expression profile in both asexual and gametocyte parasite lysates. Via immunofluorescence assay, the kinase was localized in the parasite cytoplasm in a punctuated manner, mostly in the gametocyte stages. Reverse genetics resulted in the generation of PfPKRP gene-disruptant parasites, thus demonstrating that unlike CLK kinases, PfPKRP is dispensable for asexual parasite survival and hence might have crucial role in sexual development of the parasite. On one hand, characterization of PfCLK kinases exemplified the kinases involved in parasite replication cycle. Successful gene-disruption and protein expression of PfPKRP kinase on the other hand, demonstrated a role of the kinase in sexual stage development of the parasite. Both kinase families therefore, represent potential candidates for anti-plasmodial compounds.
In order to survive, organisms avoid threats and seek rewards. Classical conditioning is a simple model to explain how animals and humans learn associations between events that allow them to predict threats and rewards efficiently. In the classical conditioning paradigm, a neutral stimulus is paired with a biologically significant event (the unconditioned stimulus – US). In virtue of this association, the neutral stimulus acquires affective motivational properties, and becomes a conditioned stimulus (CS+). Defensive responses emerge for pairings with an aversive US (e.g., pain), and appetitive responses emerge for pairing with an appetitive event (e.g., reward). It has been observed that animals avoid a CS+ when it precedes an aversive US during a training phase (CS+ US; forward conditioning); whereas they approach a CS+ when it follows an aversive US during the training phase (US CS+; backward conditioning). These findings indicate that the CS+ acquires aversive properties after a forward conditioning, whereas acquires appetitive properties after a backward conditioning. It is thus of interest whether event timing also modulates conditioned responses in such an opponent fashion in humans, who are capable of explicit cognition about the associations. For this purpose, four experiments were conducted in which a discriminative conditioning was applied in groups of participants that only differed in the temporal sequence between CS+ onset and US onset (i.e., the interstimulus interval – ISI). During the acquisition phase (conditioning), two simple geometrical shapes were presented as conditioned stimuli. One shape (CS+) was always associated with a mild painful electric shock (i.e., the aversive US) and the other one (CS-) was never associated with the shock. In a between-subjects design, participants underwent either forward or backward conditioning. During the test phase (extinction), emotional responses to CS+ and CS- were tested and the US was never presented. Additionally, a novel neutral shape (NEW) was presented as control stimulus. To assess cognitive components, participants had to rate both the valence (the degree of unpleasantness or pleasantness) and the arousal (the degree of calmness or excitation) associated with the shapes before and after conditioning. In the first study, startle responses, an ancestral defensive reflex consisting of a fast twitch of facial and body muscles evoked by sudden and intense stimuli, was measured as an index of stimulus implicit valence. Startle amplitude was potentiated in the presence of the forward CS+ whilst attenuated in the presence of the backward CS+. Respectively, the former response indicates an implicit negative valence of the CS+ and an activation of the defensive system; the latter indicated an implicit positive valence of the CS+ and an activation of the appetitive system. In the second study, the blood-oxygen level dependent (BOLD) response was measured by means of functional magnetic resonance imaging (fMRI) to investigate neural responses after event learning. Stronger amygdala activation in response to forward CS+ and stronger striatum activation in response to backward CS+ were found in comparison to CS-. These results support the notion that the defensive motivational system is activated after forward conditioning since the amygdala plays a crucial role in fear acquisition and expression. Whilst the appetitive motivational system is activated after backward conditioning since the striatum plays a crucial role in reward processing. In the third study, attentional processes underlying event learning were observed by means of steady-state visual evoked potentials (ssVEPs). This study showed that both forward and backward CS+ caught attentional resources. More specifically, ssVEP amplitude was higher during the last seconds of forward CS+ that is just before the US, but during the first seconds of backward CS+ that is just after the US. Supposedly, attentional processes were located at the most informative part of CS+ in respect to the US. Participants of all three studies rated both forward and backward CS+ more negative and arousing compared to the CS-. This indicated that event timing did not influence verbal reports similarly as the neural and behavioral responses indicating a dissociation between the explicit and implicit responses. Accordingly, dual process theories propose that human behavior is determined by the output of two systems: (1) an impulsive implicit system that works on associative principles, and (2) a reflective explicit system that functions on the basis of knowledge about facts and values. Most importantly, these two systems can operate in a synergic or antagonistic fashion. Hence, the three studies of this thesis congruently suggest that the impulsive and the reflective systems act after backward association in an antagonistic fashion. In sum, event timing may turn punishment into reward in humans even though they subjectively rate the stimulus associated with aversive events as being aversive. This dissociation might contribute to understand psychiatric disorders, like anxiety disorders or drug addiction.
The human gut is home for thousands of microbes that are important for human life. As most of these cannot be cultivated, metagenomics is an important means to understand this important community. To perform comparative metagenomic analysis of the human gut microbiome, I have developed SMASH (Simple metagenomic analysis shell), a computational pipeline. SMASH can also be used to assemble and analyze single genomes, and has been successfully applied to the bacterium Mycoplasma pneumoniae and the fungus Chaetomium thermophilum. In the context of the MetaHIT (Metagenomics of the human intestinal tract) consortium our group is participating in, I used SMASH to validate the assembly and to estimate the assembly error rate of 576.7 Gb metagenome sequence obtained using Illumina Solexa technology from fecal DNA of 124 European individuals. I also estimated the completeness of the gene catalogue containing 3.3 million open reading frames obtained from these metagenomes. Finally, I used SMASH to analyze human gut metagenomes of 39 individuals from 6 countries encompassing a wide range of host properties such as age, body mass index and disease states. We find that the variation in the gut microbiome is not continuous but stratified into enterotypes. Enterotypes are complex host-microbial symbiotic states that are not explained by host properties, nutritional habits or possible technical biases. The concept of enterotypes might have far reaching implications, for example, to explain different responses to diet or drug intake. We also find several functional markers in the human gut microbiome that correlate with a number of host properties such as body mass index, highlighting the need for functional analysis and raising hopes for the application of microbial markers as diagnostic or even prognostic tools for microbiota-associated human disorders.
This thesis consists of three major chapters, each of which has been separately published or under the process for publication. The first chapter is about anatomical characterization of the mushroom body of adult Drosophila melanogaster. The mushroom body is the center for olfactory learning and many other functions in the insect brains. The functions of the mushroom body have been studied by utilizing the GAL4/UAS gene expression system. The present study characterized the expression patterns of the commonly used GAL4 drivers for the mushroom body intrinsic neurons, Kenyon cells. Thereby, we revealed the numerical composition of the different types of Kenyon cells and found one subtype of the Kenyon cells that have not been described. The second and third chapters together demonstrate that the multiple types of dopaminergic neurons mediate the aversive reinforcement signals to the mushroom body. They induce the parallel memory traces that constitute the different temporal domains of the aversive odor memory. In prior to these chapters, “General introduction and discussion” section reviews and discuss about the current understanding of neuronal circuit for olfactory learning in Drosophila.
Regulation of pathogen-inducible volatile compounds in Arabidopsis and their role in plant defense
(2010)
Plants are constantly attacked by pathogenic microbes. As a result, they have evolved a plethora of constitutive and inducible defense responses to defend against attempted pathogen infection. Although volatile organic compounds have been implicated in plant defense, direct evidence of their function in plant resistance is still lacking. I have examined the role of VOCs in Arabidopsis defense against the hemibiotrophic bacterial pathogen Pseudomonas syringae pv. maculicola. The obtained results show that the vegetative parts of Arabidopsis produces and emits the volatile phenylpropanoid MeSA and three kinds of terpenoids, (E,E)-4,8,12-trimethyltrideca-1,3,7,11-tetraene (TMTT), alpha-ionon and beta-farnesen, upon avirulent and virulent P. syringae inoculation. Whereas the most abundant volatiles, MeSA and TMTT, are already produced at early stages of infection in the compatible and incompatible interaction, enhanced emission of alpha-ionon and beta-farnesen can only be detected in later stages of the compatible interaction. It was revealed that pathogen-induced synthesis of TMTT in Arabidopsis requires the JA signaling pathway but occurs independently of SA defense signaling. Similarly, the production of MeSA is dependent on JA signaling but not on the SA defense signaling pathway. Furthermore, production of MeSA is dependent on the function of ISOCHORISMATE SYNTHASE1, which produces its precursor SA. Upon inoculation with avirulent P. syringae, endogenously produced JA activates the JA signalling pathway to mediate MeSA and TMTT synthesis. By contrast, in the compatible Arabidopsis-Psm interaction, production of MeSA predominantly depends on the P. syringea the virulence factor coronatine, which activates JA downstream signaling. To learn more about the role of inducible VOCs in plant defense responses, I have identified an Arabidopsis T-DNA insertions line with a defect in the TERPENE SYNTHASE4 (TPS4) gene. Emission profiles from this mutant revealed that the induced production of TMTT but not of alpha-ionone, beta-farnesene or MeSA are abolished, demonstrating that TPS4 specifically regulates the P. syringae-induced synthesis of TMTT in Arabidopsis. The lack of TMTT in tps4 mutants, however, does not affect plant defense responses and resistance induction against P. syringae. This excludes a role of the terpenoid as an effective phytoalexin in Arabidopsis leaves against the bacterial pathogen. Moreover, tps4 mutant plants are still able to mount a SAR response, excluding a signaling function of TMTT during SAR. An important aim of our studies was to address the defensive role of MeSA, the major VOC emitted from P. syringae-inoculated Arabidopsis leaves. MeSA has been recently proposed as a critical long distance signal in the development of SAR. I found that two independent T-DNA insertions lines with defects in expression of the pathogen-inducible SA methyl transferase gene BSMT1 are completely devoid of pathogen-induced production of MeSA. However, bsmt1 mutant plants are capable to increase the level of SA in systemic, non-infected leaves of Arabodopsis and develop SAR like wild-type plants upon local P. syringae-inoculation. Thus, MeSA does not function as a critical SAR signal in Arabidopsis. Further experiments showed that SA accumulation in distant leaves occurs due to de novo synthesis through isochorismate synthase. In addition, we also ruled out a critical defensive role of MeSA at inoculation sites, because bsmt1 mutants are able to build up SA-dependent defense responses and local resistance in a wild-type-like manner. The conversion of SA to MeSA and subsequently emission of MeSA from the plant might help the plant to detoxify an excess of SA. This process is regulated by the JA pathway and might be one means to mediate negative crosstalk between JA and SA signaling. Moreover, the COR-triggered conversion of SA to MeSA and emission of the volatile methyl ester could be a way by which virulent P. syringae is able to attenuate the SA-defense pathway.
Für die Lösung der quantenmechanischen Bewegungsgleichungen, die komplexe, molekulare Systeme beschreiben, sind effiziente und verlässliche Näherungsverfahren erforderlich. Die Dichtefunktionaltheorie (DFT) stellt für die Behandlung der Elektronenwechselwirkung in vielen Fällen den besten Kompromiss zwischen Effizienz und Genauigkeit dar. Im Rahmen der DFT wird die gesamte nicht-klassische Elektron-Elektron-Wechselwirkung im so genannten Austausch-Korrelationsfunktional angenähert. Viele solcher Näherungen sind semi-empirischer Natur, andere wurden ausschließlich von physikalischen Überlegungen abgeleitet. In globalen Hybridfunktionale wird ein konstanter Anteil der integrierten DFT-Austauschenergiedichte durch exakten Austausch aus der Hartree-Fock Näherung ersetzt. Das populärste Funktional B3LYP enthält 20 % exakten Austausch und mehrere empirische Parameter. Der optimale Prozentsatz hängt allerdings sehr stark von den zu berechnenden Systemen und molekularen Eigenschaften ab. Eine Lösung dieses Problems sollten lokale Hybridfunktionale liefern, in denen die Beimischung der exakten Austauschenergiedichte über eine lokale Mischfunktion (LMF) gesteuert wird und daher positions- und molekülabhängig ist. In dieser Arbeit wird ein semi-empirischer Ansatz für die Entwicklung neuer lokaler Hybridfunktionale verfolgt: während die Energiedichten unverändert aus etablierten Näherungen zum Austauschkorrelationsfunktional übernommen werden, stehen parametrisierte LMFs im Zentrum der Untersuchungen. Die verschiedenen LMFs beinhalten neben mindestens einem empirischen Parameter eine Variable die vom Quotienten der von-Weizsäcker kinetischen Energiedichte und der korrelierten kinetischen Energiedichte (sogenannte t-LMFs) bzw. dem reduzierten Dichtegradienten (bezeichnet als t-LMFs) abhängt. Weitere LMFs werden durch zusätzliche Berücksichtigung der Spinpolarisation erhalten. Alle Parameter werden an Atomisierungsenergien bzw. Reaktionsbarrieren bekannter molekularer Testsätze gefittet. Durch Visualisierung der LMFs können zusätzlich Einblicke in den physikalischen Hintergrund und in Möglichkeiten der Weiterentwicklung gewonnen werden. Es wurde beispielsweise beobachtet, dass entlang einer gedehnten Bindung höhere Werte der LMF und damit größere Beimischungen exakter Austauschenergie in Übergangszuständen einhergehen. Dieser Effekt ist für t-LMFs am ausgeprägtesten und korreliert mit besseren Ergebnissen für Reaktionsbarrieren mit lokalen Hybridfunktionalen, die auf einer t-LMF basieren. Bis auf wenige Ausnahmen leiten sich die lokalen Hybridfunktionale in dieser Arbeit aus dem Austausch- und Korrelationsfunktional der lokalen Dichtenäherung (LSDA) ab und enthalten keine Gradientenkorrektur im Sinne der GGA (generalized gradient approximation). Die neuen Funktionale wurden zunächst nicht-selbstkonsistent in eine Entwicklerversion des quantenchemischen Programmpaketes Turbomole implementiert. Das bedeutet, für gegebene Molekülorbitale bzw. eine gegeben Elektronendichte kann lediglich die Gesamtenergie berechnet werden. Dies ist eine anerkannte Näherung, die vor allem für die Optimierung der Parameter eine große Zeitersparnis darstellt. Um letztlich orbitalabhängige, molekulare Eigenschaften berechnen zu können wird neben der Gesamtenergie auch noch das zugehörige lokale Hybridpotential benötigt. Für die selbstkonsistente Implementierung wird die funktionale Ableitung der Austauschkorrelationsenergie nach den Orbitalen bestimmt. Daraus resultierend müssen neben den üblichen lokalen Austauschkorrelationspotentialtermen auch Integrale berechnet werden, die das mit der LMF gewichtete nicht-lokale exakte Austauschpotential enthalten. Die entsprechenden Terme kann man, genauso wie die exakte Austauschenergiedichte an sich, nicht analytisch berechnen. Früheren Ansätzen folgend wurden sie in der vorliegenden Arbeit in einer Basissatzentwicklung angenähert, wobei der Einfachheit halber die atomaren Basisfunktionen verwendet wurden. Um die Genauigkeit dieser sogenannten RI (resolution of the identity)-Näherung validieren zu können und auch schon im Hinblick auf die Anpassung einer Hilfsbasis, wurde darüber hinaus die numerische Berechnung aller Integrale, die das exakte Austauschpotential und die entsprechende Energiedichte enthalten, implementiert. Unter Verwendung der RI-Näherung ist der Rechenaufwand lokaler Hybride vergleichbar mit dem globaler Hybridfunktionale: Während die formale Skalierung in Abhängigkeit der Systemgröße gleich ist, ergab sich ein etwas höherer Vorfaktor für die lokalen Hybride. Verschiedene Literaturbekannte Testsätze mit Atomisierungsenergien, Reaktionsbarrieren, Dissoziationsenergien oder Gleichgewichtsabständen, die teilweise einige Schwächen bisheriger Dichtefunktionalnäherungen aufdecken, wurden berücksichtigt. Für die 223 Atomisierungsenergien des G3 Testsatzes stellen alle unsere Funktionale eine signifikante Verbesserung gegenüber B3LYP dar. Atomisierungsenergien sind insofern ein sensibler Test, da alle Bindungen gebrochen werden und Fehlerkompensation eine untergeordnete Rolle spielt. Vor allem lokale Hybridfunktionale, deren LMFs neben der kinetischen Energiedichte explizit von der Spinpolarisation abhängen, lieferten hervorragende Resultate. Obwohl im Vergleich zu Atomisierungsenergien für die korrekte Berechnung von Reaktionsbarrieren im Allgemeinen mehr exakter Austausch benötigt wird, sind unsere Funktionale auch für zwei Testsätze mit jeweils 38 Reaktionsbarrieren besser als B3LYP. Zwar kann mit einem globalen Hybrid mit 50 % exaktem Austausch eine geringere Abweichung von den Richtwerten erzielt werden, aber ein solches Funktional ist für thermochemische Daten unzureichend. Hier wurde erstmals gezeigt, dass lokale Hybridfunktionale ohne Gradientenkorrektur sowohl für Thermochemie als auch für Kinetik zufrieden stellende Ergebnisse liefern können. Das Dissoziationsverhalten symmetrischer Radikalkationen stellt für die hier diskutierten Dichtefunktionale nach wie vor eine Herausforderung dar: Die Dissoziationsenergien von sieben Modellsystemen werden mit unseren Funktionalen stark überschätzt und Gleichgewichtsabstände unterschätzt. Insgesamt sind die Werte nur marginal besser als mit B3LYP. Neben Eigenschaften von Hauptgruppenverbindungen wurden zudem Übergangsmetalldimere und -monohydride untersucht. Für erstere ist eine gute Beschreibung dynamischer sowie statischer Elektronenkorrelation ausschlaggebend. In den Hydriden andererseits dominiert mit gängigen Dichtefunktionalen die unphysikalische Selbstwechselwirkung eines Elektrons mit sich selbst. Für die 3d-Übergangsmetalldimere sind die getesteten Funktionale genauso gut wie B3LYP und für die Hydride etwas besser. Atomare s-d Transferenergien von 3d Übergangsmetallen verbleiben auch für unsere lokalen Hybridfunktionale, die insgesamt schlechtere Ergebnisse erzielen als B3LYP, noch problematisch. Das hierfür geeignetste lokale Hybridfunktional basiert auf einer s-LMF und beinhaltet LYP Korrelation. Für die isotropen Hyperfeinkopplungskonstanten (HFCCs) kleiner Hauptgruppenverbindungen wurden zufriedenstellende Ergebnisse (ähnlich wie B3LYP) mit einem t-LMF basierten lokalen Hybrid erzielt. Die RI Näherung zum lokalen Hybridpotential wurde dem numerisch exakten Potential für die Berechnung von Gesamtenergien, isotrope HFCCs und Orbitalenergien für verschiedene Basissätze gegenübergestellt. Wie erwartet ist der Fehler für Gesamtenergien mit der RI-Näherungen vergleichsweise gering, vor allem relativ zu den verbleibenden Abweichungen von experimentellen Energien. Der Vergleich der mittleren absoluten Abweichung von experimentellen Werten für 26 isotrope HFCCs zeigt sogar für mittelgroße und kontrahierte IGLO Basissätze nur geringe Unterschiede zwischen dem RI-Potential und dem numerisch exakten lokalen Hybridpotential. Die Analyse der HFCCs einzelner Moleküle und der Orbitalenergien des CN Moleküls offenbart allerdings, dass Ungenauigkeiten aufgrund der RI-Näherung hier eine größere Rolle spielen, vor allem wenn zu kleine atomare Basissätze verwendet werden. Von den untersuchten lokalen Hybriden stellen sich einige als hervorragende Kandidaten für die Berechnung thermochemischer und kinetischer Eigenschaften heraus. Jeweils unterschiedliche Funktionale erzielen darüber hinaus mit den besten bekannten Funktionalen vergleichbare Ergebnisse für isotrope Hyperfeinkopplungskonstanten und ausgewählte Eigenschaften kleiner Übergangsmetallverbindungen. Die in dieser Arbeit präsentierten lokalen Hybridfunktionale stellen daher einen wichtigen Schritt in der Entwicklung universeller Näherungen zum Austauschkorrelationsfunktional dar. Zur akkuraten Beschreibung molekularer Eigenschaften von Übergangsmetallkomplexen und dem Dissoziationsverhalten von Radikal-Kation-Dimeren neben Thermochemie und Kinetik, werden in Zukunft wohl komplexere LMFs benötigt. Um konkurrenzfähige lokale Hybride mit gradientenkorrigierter Austausch- und Korrelationsenergiedichte zu entwickeln, müssen darüber hinaus weitere Studien zum Einfluss des abweichenden Eichursprungs der miteinander kombinierten Austauschenergiedichten durchgeführt werden. Eine andere Möglichkeit ist die Entwicklung speziell abgestimmter Korrelationsfunktionale für lokale Hybride. Außerdem sollte die Qualität der RI-Näherung zum lokalen Hybridpotential detaillierter untersucht werden. Hierfür könnten zum Beispiel Ionisierungsenergien und Elektronenaffinitäten herangezogen werden. Um zusätzliche Abweichungen oder sogar fälschlicherweise "zu gute" Ergebnisse bei Validierungsrechnungen zu vermeiden, sollten Hilfsbasen für die Entwicklung des nicht-lokalen exakten Austauschpotentials implementiert und optimiert werden. Einer der nächsten Implementierungsschritte sollte auch Gradienten bezüglich der Kernkoordinaten beinhalten, um die Validierung der neuen lokalen Hybridfunktionale auf Strukturoptimierungen auszuweiten.
The genus Borrelia belongs to the Spirochaetes phylum which is far related to Gram negative bacteria. This phylum possesses a characteristic long helically coiled shape with lengths that vary from 5 to 250 μm. Other pathogens as Treponema and Leptospira which cause syphilis and leptospirosis, also belong to the Spirochaetes. Borrelia itself is the causative agent of two human diseases, the Lyme disease and relapsing fever. Borreliae are pathogenic bacteria which cycle between their arthropod vector, in most cases a tick, and a mammal host, very often small rodents. This complex life cycle requires an extraordinary protein up- and down-regulation in order to survive in such different organisms and avoid their immunologic systems. Lyme disease is a multisystemic disease that can affect different organs like skin, joints and nervous system. A red rash with concentric rings, called erythema migrans is a distinctive manifestation that allows clinical diagnosis. It appears after the bite of an infected tick and spreads out to diameters that can reach 15 cm. Relapsing fever is characterized by sudden recurrent fever peaks accompanied with chills, headache, muscle and joint pain and nausea. Both diseases are easily treated with antibiotics in early infection stages. Borrelia species possess a small genome. Many of their genes are related with virulence and the adaptation to the different hosts. The absence of genes in Borrelia involved in the biosynthesis of amino acids, fatty acids or nucleotide is very remarkable. This metabolic deficiency makes Borrelia species dependent on substances produced by the host. The first step in nutrient uptake is accomplished by porins. Bacterial porins are water-filled channels that facilitate the transport of essential molecules through the outer membrane. Four porins have been described in Borrelia up to this point. P66, P13 and Oms28 have been found in Borrelia burgdorferi while Oms38 was discovered in relapsing fever spirochetes. P66 is a singular porin with an extremely high single channel conductance of 11 nS. P13 is a small protein with an α-helical secondary structure which does not fit into the general porin model. The function of Oms28 as a porin has been questioned recently due to its periplasmic membrane-associated location. Finally, Oms38 is a specific porin for dicarboxilates with homologues in Lyme disease species. The aim of this thesis was to broaden the knowledge of the P66 and P13 porins described in the genus Borrelia. Both differ in structure and size from the general Gram negative porin model and could be highly involved in specific tasks in the genus Borrelia. In the first project of this thesis, the presence and pore forming capacity of P66 was studied in several Borrelia species including members of the relapsing fever group. P66 is the best studied porin in Borrelia with a dual function as porin and adhesin. This knowledge is restricted to B. burgdorferi and little or nothing is known about homologues in other Borrelia species. Therefore, three Lyme disease and three relapsing fever species were chosen as representative agents of the genus and the pore forming activity of their P66 homologues was studied. Five out of the six homologues exhibited a similar single channel conductance in a range from 9 to 11 nS. All of them showed no selectivity for cations or anions, and they were voltage dependent starting at different voltages from 30 to 70 mV. Only in the case of the B. hermsii homologue no pore forming activity could be established. It remains unclear if the lack of activity was due to an evolutionary loss of its porin function or to a higher sensibility to the detergents used for purification. In another project, the controversial P66 pore diameter of B. burgdorferi was analyzed with an empirical method. In a former study, the diameter of the P66 channel was estimated to be 2.6 nm based on theoretical considerations. This diameter is rather large and could impair the outer membrane protective function. Different non-electrolytes were used to study the P66 pore diameter indicating a 1.8 nm entrance diameter and a 0.8 nm inner constriction. In addition, the blockage of the channel with some of those non-electrolytes disclosed an oligomeric organization formed by approximately eight independent channels. Such a structure has not been observed so far in any other living organism and could be exclusive of Borrelia or spirochetes. The third project of this thesis deal with the recombinant production of a B. burgdorferi protein with immunogenic potential. This protein might be used to develop new diagnosis tests and therapeutic treatments. P13 is an outer membrane protein present in LD and RF species and it does not have any other known bacterial homologue. These facts make of P13 a good candidate to be used as a therapeutic target. For such purpose, P13 was cloned in two organisms. First, in Escherichia coli were two different constructs were designed to establish the role of a periplasmic cleaved C-terminus. Second, in a virus based vector delivered by Agrobacterium tumefaciens into tobacco plant cells. The vector replicates inside the plant cells spreading the infection to adjacent cells and at the same time producing the recombinant protein. This second expression method should enable the production of large amounts of the recombinant protein reducing time and costs. The last project of this thesis looked into the outer membrane complexome of B. burgdorferi focusing on the P13 and P66 porin complexes. Blue Native Page and second dimension SDS Page were the technique chosen for this purpose. P66 could be shown to be the only protein involved in the formation of the 11 nS pore which complex is probably formed by eight monomers. It was also possible to divide this complex in two halves with approximately half the molecular weight and a conductance of 5.5 nS. In the case of the P13 complex, a possible association with the lipoprotein OspC was revealed. The gel extraction of the P13 complex and its test with the Back Lipid Bilayer assay exhibited a 0.6 nS activity. This is in high contrast with the 3.5 nS activity previously described for this protein. To sum up, P66 is a porin present in many Borrelia species including not only LD but also RF species and which homologues show similar biophysical properties. The diameter of this pore is smaller than previously thought and it has molecular weight sieving properties. In the case of P13, its recombinant procurement will allow the use of P13 as a diagnostic and therapeutic target. The possible association with OspC could facilitate to unravel in future experiments the function of this intriguing protein.
Avian pathogenic Escherichia coli (APEC) represent a subset of the so-called extraintestinal pathogenic Escherichia coli (ExPEC) pathotype that can cause various extraintestinal infections in humans and animals. APEC are the causative agent of localized colibacillosis or systemic infection in poultry. In this latter case, the syndrome starts as an infection of the upper respiratory tract and develops into a systemic infection. Generally, ExPEC are characterized by a broad variety of virulence-associated factors that may contribute to pathogenesis. Major virulence factors, however, that clearly define this pathotype, have not been identified. Instead, virulence-associated genes of ExPEC and thus also of APEC could be used in a mix-and-match-fashion. Both pathotypes could not be clearly distinguished by molecular epidemiology, and this suggested a hypothetical zoonotic risk caused by APEC. Accordingly, the main scientific question of this study was to characterize common traits as well as differences of APEC and human ExPEC variants that could either support the possible zoonotic risk posed by these pathogenic E. coli strains or indicate factors involved in host specificity. Comparative genomic analysis of selected APEC and human ExPEC isolates of the same serotype indicated that these variants could not be clearly distinguished on the basis of (i) general phenotypes, (ii) phylogeny, (iii) the presence of typical ExPEC virulence genes, and (iv) the presence of pathoadaptive mutations. Allelic variations in genes coding for adhesins such as MatB and CsgA or their regulators MatA and CsgD have been observed, but further studies are required to analyze their impact on pathogenicity. On this background, the second part of this thesis focused on the analysis of differences between human ExPEC and APEC isolates at the gene expression level. The analysis of gene expression of APEC and human ExPEC under growth conditions that mimick their hosts should answer the question whether these bacterial variants may express factors required for their host-specificity. The transcriptomes of APEC strain BEN374 and human ExPEC isolate IHE3034 were compared to decipher whether there was a specific or common behavior of APEC and human ExPEC, in response to the different body temperatures of man (37°C) or poultry (41°C). Only a few genes were induced at 41 °C in each strain relative to growth at 37 °C. The group of down-regulated genes in both strains was markedly bigger and mainly included motility and chemotaxis genes. The results obtained from the transcriptome, genomic as well as phenotypic comparison of human ExPEC and APEC, supports the idea of a potential zoonotic risk of APEC and certain human ExPEC variants. In the third part of the thesis, the focus was set on the characterization of Mat fimbriae, and their potential role during ExPEC infection. Comparison of the mat gene cluster in K-12 strain MG1655 and O18:K1 isolate IHE3034 led to the discovery of differences in (i) DNA sequence, (ii) the presence of transcriptional start and transcription factor binding sites as well as (iii) the structure of the matA upstream region that account for the different regulation of Mat fimbriae expression in these strains. A negative role of the H-NS protein on Mat fimbriae expression was also proven at 20 °C and 37 °C by real-time PCR. A major role of this fimbrial adhesin was demonstrated for biofilm formation, but a significant role of Mat fimbriae for APEC in vivo virulence could not yet be determined. Interestingly, the absence of either a functional matA gene or that of the structural genes matBCDEF independently resulted in upregulation of motility in E. coli strains MG1655 and IHE3034 by a so far unknown mechanism. In conclusion, the results of this thesis indicate a considerable overlap between human and animal ExPEC strains in terms of genome content and phenotypes. It becomes more and more apparent that the presence of a common set of virulence-associated genes among ExPEC strains as well as similar virulence gene expression patterns and phylogenetic backgrounds indicate a significant zoonotic risk of avian-derived E. coli isolates. In addition, new virulence factors identified in human ExPEC may also play a role in the pathogenesis of avian ExPEC.
Cysteines play important roles in the biochemistry of many proteins. The high reactivity, redox properties, and ability of the free thiol group to coordinate metal ions designate cysteines as the amino acids of choice to form key catalytic components of many enzymes. Also, cysteines readily react with reactive oxygen and nitrogen species to form reversible oxidative thiol modifications. Over the last few years, an increasing number of proteins have been identified that use redox-mediated thiol modifications to modulate their function, activity, or localization. These redox-regulated proteins are central players in numerous important cellular processes. First aim of this study was to discover nitric oxide (NO) sensitive proteins in E. coli, whose redox-mediated functional changes might explain the physiological alterations observed in E. coli cells suffering from NO-stress. To identify E. coli proteins that undergo reversible thiol modifications upon NO-treatment in vivo, I applied a differential thiol trapping technique combined with two-dimensional gel analysis. 10 proteins were found to contain thiol groups sensitive to NO-treatment. Subsequent genetic studies revealed that the oxidative modifications of AceF & IlvC are, in part, responsible for the observed NO-induced growth inhibition. Noteworthy, the majority of identified protein targets turned out to be specifically sensitive towards reactive nitrogen species. This oxidant specificity was tested on one NO-sensitive protein, the small subunit of glutamate synthase. In vivo and in vitro activity studies demonstrated that glutamate synthase rapidly inactivates upon nitric oxide treatment but is resistant towards other oxidative stressors. These results imply that reactive oxygen and nitrogen species affect distinct physiological processes in bacteria. The second aim of my study was to identify redox-sensitive proteins in S. cerevisiae and to use their redox state as in vivo read-out to assess the role of oxidative stress during the eukaryotic aging process. I first determined the precise in vivo thiol status of almost 300 yeast proteins located in the cytosol and sub-cellular compartments of yeast cells using a highly quantitative mass spectrometry based thiol trapping technique, called OxICAT. The identified proteins can be clustered in four groups: 1) proteins, whose cysteine residues are oxidation resistant; 2) proteins with structurally or functionally important cysteine modifications 3) proteins with highly oxidation-sensitive active site cysteines, which are partially oxidized in exponentially growing yeast cells due to their exquisite sensitivity towards low amounts of ROS; 4) proteins that are reduced in exponentially growing cells but harbor redox-sensitive cysteine(s) that affect the catalytic function of the protein during oxidative stress. These oxidative stress sensitive proteins were identified by exposure of yeast cells to sublethal concentrations of H2O2 or superoxide. It was shown that the major targets of peroxide- and superoxide-mediated stress in the cell are proteins involved in translation, glycolysis, TCA cycle and amino acid biosynthesis. These targets indicate that cells rapidly redirect the metabolic flux and energy towards the pentose phosphate pathway in an attempt to ensure the production of the reducing equivalent NADPH to counterattack oxidative stress. These results reveal that the quantitative assessment of a protein’s oxidation state is a valuable tool to identify catalytically active and redox-sensitive cysteine residues. The OxICAT technology was then used to precisely determine extent and onset of oxidative stress in chronologically aging S. cerevisiae cells by utilizing the redox status of proteins as physiological read-out. I found that chronological aging yeast cells undergo a global collapse of the cellular redox homeostasis, which precedes cell death. The onset of this collapse appears to correlate with the yeast life span, as caloric restriction increases the life span and delays the redox collapse. These results suggest that maintenance of the redox balance might contribute to the life expanding benefits of regulating the caloric intake of yeast. Clustering analysis of all oxidatively modified proteins in chronological aging yeast revealed a subset of proteins whose oxidative thiol modifications significantly precede the general redox collapse. Oxidation of these early target proteins, which most likely results in a loss of their activity, might contribute to or even cause the observed loss of redox homeostasis (i.e., thioredoxin reductase) in chronologically aging yeast. These studies in aging yeast expand our understanding how changes in redox homeostasis affect the life span of yeast cells and confirm the importance of oxidative thiol modifications as key posttranslational modifications in pro- and eukaryotic organisms.
Cooperation is beneficial for social groups and is exemplified in its most sophisticated form in social insects. In particular, eusocial Hymenoptera, like ants and honey bees, exhibit a level of cooperation only rarely matched by other animals. To assure effective defense of group members, foes need to be recognized reliably. Ants use low-volatile, colony-specific profiles of cuticular hydrocarbons (colony odor) to discriminate colony members (nestmates) from foreign workers (non-nestmates). For colony recognition, it is assumed that multi-component colony odors are compared to a neuronal template, located in a so far unidentified part of the nervous system, where a mismatch results in aggression. Alternatively, a sensory filter in the periphery of the nervous system has been suggested to act as a template, causing specific anosmia to nestmate colony odor due to sensory adaptation and effectively blocking perception of nestmates. Colony odors are not stable, but change over time due to environmental influences. To adjust for this, the recognition system has to be constantly updated (template reformation). In this thesis, I provide evidence that template reformation can be induced artificially, by modifying the sensory experience of carpenter ants (Camponotus floridanus; Chapter 1). The results of the experiments showed that template reformation is a relatively slow process taking several hours and this contradicts the adaptation-based sensory filter hypothesis. This finding is supported by first in-vivo measurements describing the neuronal processes underlying template reformation (Chapter 5). Neurophysiological measurements were impeded at the beginning of this study by the lack of adequate technical means to present colony odors. In a behavioral assay, I showed that tactile interaction is not necessary for colony recognition, although colony odors are of very low volatility (Chapter 2). I developed a novel stimulation technique (dummy-delivered stimulation) and tested its suitability for neurophysiological experiments (Chapter 3). My experiments showed that dummy-delivered stimulation is especially advantageous for presentation of low-volatile odors. Colony odor concentration in headspace was further increased by moderately heating the dummies, and this allowed me to measure neuronal correlates of colony odors in the peripheral and the central nervous system using electroantennography and calcium imaging, respectively (Chapter 4). Nestmate and non-nestmate colony odor elicited strong neuronal responses in olfactory receptor neurons of the antenna and in the functional units of the first olfactory neuropile of the ant brain, the glomeruli of the antennal lobe (AL). My results show that ants are not anosmic to nestmate colony odor and this clearly invalidates the previously suggested sensory filter hypothesis. Advanced two-photon microscopy allowed me to investigate the neuronal representation of colony odors in different neuroanatomical compartments of the AL (Chapter 5). Although neuronal activity was distributed inhomogeneously, I did not find exclusive representation restricted to a single AL compartment. This result indicates that information about colony odors is processed in parallel, using the computational power of the whole AL network. In the AL, the patterns of glomerular activity (spatial activity patterns) were variable, even in response to repeated stimulation with the same colony odor (Chapter 4&5). This finding is surprising, as earlier studies indicated that spatial activity patterns in the AL reflect how an odor is perceived by an animal (odor quality). Under natural conditions, multi-component odors constitute varying and fluctuating stimuli, and most probably animals are generally faced with the problem that these elicit variable neuronal responses. Two-photon microscopy revealed that variability was higher in response to nestmate than to non-nestmate colony odor (Chapter 5), possibly reflecting plasticity of the AL network, which allows template reformation. Due to their high variability, spatial activity patterns in response to different colony odors were not sufficiently distinct to allow attribution of odor qualities like ‘friend’ or ‘foe’. This finding challenges our current notion of how odor quality of complex, multi-component odors is coded. Additional neuronal parameters, e.g. precise timing of neuronal activity, are most likely necessary to allow discrimination. The lower variability of activity patterns elicited by non-nestmate compared to nestmate colony odor might facilitate recognition of non-nestmates at the next level of the olfactory pathway. My research efforts made the colony recognition system accessible for direct neurophysiological investigations. My results show that ants can perceive their own nestmates. The neuronal representation of colony odors is distributed across AL compartments, indicating parallel processing. Surprisingly, the spatial activity patterns in response to colony are highly variable, raising the question how odor quality is coded in this system. The experimental advance presented in this thesis will be useful to gain further insights into how social insects discriminate friends and foes. Furthermore, my work will be beneficial for the research field of insect olfaction as colony recognition in social insects is an excellent model system to study the coding of odor quality and long-term memory mechanisms underlying recognition of complex, multi-component odors.
Since the beginning, central banks have used a wide range of instruments to achieve their ultimate purpose of price stability. One measure in the authorities toolbox is a foreign exchange market intervention. The discussion about this instrument has come a long way. So far, the discussion relied mainly on industrialized countries' experiences. The negative outcomes of most studies with respect to the effectiveness of the intervention tool, opened up a discussion, whether interventions should be used by the authorities to manage exchange rate aspects. Consequently, the question about the dynamics of foreign exchange market interventions is now open to the subject-matter of developing and emerging market countries. Monetary policy in those countries often constitutes an active management of exchange rates. However, the basic discussions about intervention dynamics have had one essential drawback. Neither the primary literature of industrialized countries nor studies dealing with developing countries have considered the fact that intervention purposes and the corresponding effects are likely to vary over time. This thesis is designed to provide the reader with essential issues of central bank interventions, and aims to give further, as well as new contributions, in terms of empirical research on interventions in emerging markets. The main objectives of this study are the analysis of central bank intervention motives, and the corresponding effects on exchange rates in emerging markets. The time dependency of both issues is explicitly considered, which states a novelty in academic research of central bank interventions. Additionally, the outcomes are discussed against the background of underlying economic and monetary policy fundamentals. This could well serve as a starting point for further research.
Summary: I previously demonstrated that conditional overexpression of the neuronal nitric oxide synthase (nNOS) inhibited L-type Ca2+-channels and decreased myocardial contractility1 (Burkard N. et al. (2007). Circ Res 100, 32-44). However, nNOS has multiple targets within the cardiac myocyte and it is possible that interesting biological functions of this protein remain to be elucidated. In this study, I showed that nNOS overexpression has a cardioprotective effect after ischemia-reperfusion injury by inhibiting mitochondrial function and reducing the generation of reactive oxygen species (ROS). The effect of conditional nNOS overexpression in cardiac myocytes in ischemiareperfusion injury was assessed. Ischemia-reperfusion injury in WT mice resulted in nNOS accumulation in the mitochondria. Similary, transgenic nNOS overexpression caused nNOS abundance in mitochondria. Electron microscopy of mouse myocardium from nNOS overexpressing mice showed that after induction of its expression, nNOS is additionally localised in mitochondria. nNOS translocation into mitochondria was dependent on HSP90. Ischemia-reperfusion experiments in isolated hearts showed a cardioprotective effect of nNOS overexpression (30min post-ischemia, LVDP 27.0±2.5mmHg in non-induced animals vs. 45.2±1.9mmHg in nNOS overexpressing mice, n=12, p<0.05). Consistently with this finding, in vivo the infarct size within the area at risk was significantly decreased in nNOS overexpressing mice compared to non-induced animals (36.6±8.4 relative % vs. 61.1±2.9 relative %, n=12, p<0.05). nNOS overexpression also caused a significant increase in mitochondrial nitrite levels accompanied by a decrease of cytochrome c oxidase activity (72.0±8.9units/ml in nNOS overexpressing mice vs. 113.2±17.1units/ml in non-induced mice, n=12, p<0.01) resulting in an inhibition of mitochondrial function. Accordingly, O2-consumption (MVO2) in isolated heart muscle stripes was decreased in nNOS overexpressing mice, already under resting conditions (0.016±0.0015 vs. 0.024±0.006ml[O2] x mm-3 x min-1, n=13, p<0.05). Additionally, this study showed that the ROS concentration was significantlydecreased in hearts of nNOS overexpressing mice compared to non-induced animals (6.14±0.685 vs. 14.53±1.7μM, n=8, p<0.01). Application of different inhibitors, Western Blot analysis and activity assays showed that the lower ROS concentration in nNOS overexpressing mice was caused by inhibition of the xanthine oxidoreductase (XOR) activity by the increased abundance of nNOS expression. In summary, this study demonstrated that the conditional transgenic overexpression of nNOS resulted in myocardial protection after ischemia-reperfusion injury. Besides reduction of myocardial Ca2+-overload after reperfusion this might be caused by inhibition of mitochondrial function through nNOS, which reduced myocardial oxygen consumption already under baseline conditions (Burkard N. conditionally accepted by
This thesis is concerned with the statistical physics of various systems far from thermal equilibrium, focusing on universal critical properties, scaling laws and the role of fluctuations. To this end we study several models which serve as paradigmatic examples, such as surface growth and non-equilibrium wetting as well as phase transitions into absorbing states. As a particular interesting example of a model with a non-conventional scaling behavior, we study a simplified model for pulsed laser deposition by rate equations and Monte Carlo simulations. We consider a set of equations, where islands are assumed to be point-like, as well as an improved one that takes the size of the islands into account. The first set of equations is solved exactly but its predictive power is restricted to the first few pulses. The improved set of equations is integrated numerically, is in excellent agreement with simulations, and fully accounts for the crossover from continuous to pulsed deposition. Moreover, we analyze the scaling of the nucleation density and show numerical results indicating that a previously observed logarithmic scaling does not apply. In order to understand the impact of boundaries on critical phenomena, we introduce particle models displaying a boundary-induced absorbing state phase transition. These are one-dimensional systems consisting of a single site (the boundary) where creation and annihilation of particles occur, while particles move diffusively in the bulk. We study different versions of these models and confirm that, except for one exactly solvable bosonic variant exhibiting a discontinuous transition with trivial exponents, all the others display a non-trivial behavior, with critical exponents differing from their mean-field values, representing a universality class. We show that these systems are related to a $(0+1)$-dimensional non-Markovian model, meaning that in nonequilibrium a phase transition can take place even in zero dimensions, if time long-range interactions are considered. We argue that these models constitute the simplest universality class of phase transition into an absorbing state, because the transition is induced by the dynamics of a single site. Moreover, this universality class has a simple field theory, corresponding to a zero dimensional limit of direct percolation with L{\'e}vy flights in time. Another boundary phenomena occurs if a nonequilibrium growing interface is exposed to a substrate, in this case a nonequilibrium wetting transition may take place. This transition can be studied through Langevin equations or discrete growth models. In the first case, the Kardar-Parisi-Zhang equation, which defines a very robust universality class for nonequilibrium moving interfaces, is combined with a soft-wall potential. While in the second, microscopic models, in the corresponding universality class, with evaporation and deposition of particles in the presence of hard-wall are studied. Equilibrium wetting is related to a particular case of the problem, corresponding to the Edwards-Wilkinson equation with a potential in the continuum approach or to the fulfillment of detailed balance in the microscopic models. In this thesis we present the analytical and numerical methods used to investigate the problem and the very rich behavior that is observed with them. The entropy production for a Markov process with a nonequilibrium stationary state is expected to give a quantitative measure of the distance form equilibrium. In the final chapter of this thesis, we consider a Kardar-Parisi-Zhang interface and investigate how entropy production varies with the interface velocity and its dependence on the interface slope, which are quantities that characterize how far the stationary state of the interface is away from equilibrium. We obtain results in agreement with the idea that the entropy production gives a measure of the distance from equilibrium. Moreover we use the same model to study fluctuation relations. The fluctuation relation is a symmetry in the large deviation function associated to the probability of the variation of entropy during a fixed time interval. We argue that the entropy and height are similar quantities within the model we consider and we calculate the Legendre transform of the large deviation function associated to the height for small systems. We observe that there is no fluctuation relation for the height, nevertheless its large deviation function is still symmetric.
The main aim of this thesis was the synthesis and structural characterization of penta and hexacoordinate silicon(IV) complexes. In the course of these studies, the neutral pentacoordinate silicon(IV) complexes 38, 39, 43−48, 54 and 55 were prepared. Furthermore, the neutral hexacoordinate silicon(IV) complexes 33−36, 49, 50, 52, 53, 56−62, 63, 64 and 65 were synthesized. All compounds were characterized by elemental analyses, NMR spectroscopy in solution (1H, 13C, 15N, 29Si) and in the solid-state (13C, 15N, 29Si VACP/MAS NMR), as well as single-crystal X-ray diffraction (except 45, 47−49, 52, 53 and 63).
In the framework of this thesis, new UV-patternable organic-inorganic hybrid polymers with higher refractive indices than reported in the literature for photonic applications were developed and studied with respect to their chemical structure, their optical properties, and their ability of being patterned by 1PP and 2PP. Particularly with 2PP, one could create 3D structures using the novel hybrid materials. The materials were prepared from hydrolysis and polycondensation reactions of · organo-alkoxysilanes and titanium alkoxide precursors, modified with and without CL and organo-alkoxysilanes precursors, and · organo-alkoxysilanes, titanium alkoxide and organophosphorus precursors. The major scope of this work was to increase the refractive index of ORMCER® materials based on only organo-alkoxysilanes. Thus, the parameters which influence the refractive index were investigated thoroughly. In particular, the synthesis parameters such as the introduction of titanium alkoxide and its concentration, the organo-alkoxysilanes, the catalyst concentration, the solvent used, but, also the processing parameters such as, the UV exposure dose, initiator concentration, and developer were investigated.
Synthesis and Characterization of an Oligo(Phenylene Ethynylene)-Based Perylene Bisimide Foldamer
(2010)
The present work is part of the currently only rudimentary understanding of the structure-property relationships in the self-assembly of pi-conjugated organic molecules. Such structures may reveal favorable photophysical and semiconducting properties due to the weak non-covalent pi-pi interactions between the monomer units. The specific mutual orientation of the dyes is known to evoke individual functional properties for the condensed matter, however, the related electronic processes are still not well-understood and further enhancements of functional properties are seldom triggered by rational design. The pi-pi self-assembly structures of perylene bisimide (PBI) dyes are promising, versatile materials for organic electronic devices and have been elected for this thesis as an archetype aggregate system to investigate the dye-dye interactions in more detail. In cooperation with experts in the field of spectroscopy and theory the development of reliable routines towards a better understanding of the origins of the functional properties may be feasible, and, on a longer time-line, such knowledge may enable optimization of functional organic materials. Having designed such structures entailed the challenge of developing feasible synthesis strategies, and to actually generate the targeted molecules by synthesis. Several synthesis approaches were conducted until finally a perylene bisimide foldamer was obtained based on a Sonogashira co-polymerization reaction. After purification and enrichment of the larger-sized species by means of semi-preparative gel permeation chromatography (GPC) the average size of an octamer (8500 Da) species was determined by analytical GPC. The low polydispersity index (PD) of 1.1 is indicative of a sharp size distribution of the oligomers. This average size was confirmed by performing diffusion ordered NMR spectroscopy (DOSY). Furthermore, MALDI-TOF mass analysis substantiated the structural integrity of the co-polymerization product. Solvent-dependent UV/vis spectroscopic investigations demonstrated that intramolecular PBI aggregates are reversibly formed, indicating that this oligomer is able to fold and unfold in the intended manner upon changing external conditions. In the unfolded states, the PBI moieties are closely arranged due to the short OPE bridges (< 2.4 nm), which is expressed by an exciton coupling interaction of the dyes and therefore the characteristic monomer absorption pattern of the PBI chromophore cannot be obtained in the unfolded states. More interestingly, the folded state revealed a pronounced aggregate spectrum of the PBIs, however, striking differences in the shape of the absorption spectrum compared to our previously investigated PBI self-assembly were obtained.
Arabidopsis thaliana (A.th.) mesophyll cells play a pivotal role in the regulation of the drought stress response. The signaling & transport components involved in drought stress regulation within lipid rafts of the plasma membrane were investigated by DRM isolation from highly purified plasma membranes. Detergent treatment with Brij-98 and Triton X-100 resulted in a total of 246 DRM proteins which were identified by nano HPLC-MS/MS. The majority of these proteins could be isolated by Triton X-100 treatment (78.5 %) which remains the ”golden” standard for the isolation of DRMs. Comparing in-gel and in-solution digestion approaches disclosed additional protein identifications for each method but the in-gel approach clearly delivered the majority of the identified proteins (81.8 %). Functionally, a clear bias on signaling proteins was visible – almost 1/3 of the detected DRM proteins belonged to the group of kinases, phosphatases and other signaling proteins. Especially leucine-rich repeat receptor-like protein kinases and calcium-dependent protein kinases were present in Brij-98 & Triton X-100 DRMs, for instance the calcium-dependent protein kinase CPK21. Another prominent member of DRMs was the protein phosphatase 2C 56, ABI1, which is a key regulator of the ABA-mediated drought stress response in A.th. The lipid raft localization of the identified DRM proteins was confirmed by sterol-depletion with the chemical drug MCD. Proteins which depend upon a sterol-rich environment are depleted from DRMs by MCD application. Especially signaling proteins exhibited a strong sterol-dependency. They represented the vast majority (41.5 %) among the Triton X-100 DRM proteins which were no longer detected following MCD treatment. AtRem 1.2 & 1.3 could be shown to be sterol-dependent in mesophyll cells as well as two CPKs (CPK10 & CPK21) and the protein phosphatase ABI1. AtRem 1.2 & 1.3 could be proven to represent ideal plant lipid raft marker proteins due to their strong presence in Triton X-100 DRMs and dependency upon a sterol-rich environment. When fluorescence labeled AtRem 1.2 & 1.3 were transiently expressed in A.th. leaves, they localized to small, patchy structures at the plasma membrane. CPK21 was an intrinsic member of Triton X-100 DRMs and displayed extreme susceptibility to sterol-depletion by MCD in immunological and proteomic assays. Calcium-dependent protein kinases (CPKs) have already been studied to be involved in drought stress regulation, for instance at the regulation of S-type anion channels in guard cells. Hence, further transient expression studies with the anion channel SLAH3, protein kinase CPK21 and its counterpart, protein phosphatase ABI1 were performed in Nicotiana benthamiana. Transient co-expression of CPK21 and the anion channel SLAH3, a highly mesophyll- specific homologue of the guard cell anion channel SLAC1, resulted in a combined, sterol-dependent localization of both proteins in DRMs. Supplementary co-expression of the counterpart protein phosphatase ABI1 induced dislocation of SLAH3 from DRMs, probably by inactivation of the protein kinase CPK21. CPK21 is known to regulate the anion channel SLAH3 by phosphorylation. ABI1 dephosphorylates CPK21 thus leading to deactivation and dislocation of SLAH3 from DRMs. All this regulative events are taking place in DRMs of A.th. mesophyll cells. This study presents the first evidence for a lipid raft-resident protein complex combining signaling and transport functions in A.th. Future perspectives for lipid raft research might target investigations on the lipid raft localization of candidate DRM proteins under presence of abiotic and biotic stress factors. For instance, which alterations in the DRM protein composition are detectable upon exogenous application of the plant hormone ABA? Quantitative proteomics approaches will surely increase our knowledge of the post-transcriptional regulation of gene activity under drought stress conditions.
Protein phosphatases can be classified into at least three major families based on amino acid sequences at their active sites. A newly emerging phosphatase family contains the active site sequence DXDX(T/V), and belongs to the haloacid dehalogenase (HAD) superfamily of hydrolases, a ubiquitous and evolutionarily conserved enzyme family. Although the existence of 58 human HAD enzymes has been predicted by database analysis, our understanding of their biological functions remains rudimentary.By database mining amd phylogenetic analysis of human HAD phosphatases, we have found a marked increase in cell area of spreading cells, as well as accelerated cell spreading onfibronectin. Taken together, we have identified and characterized AUM as a novel member of the emerging family of aspartate-dependent protein tyrosine phosphatases. Our findings implicate AUM as an important regulator of Src-dependent cytoskeletal dynamics during cell adhesion and migration. a previously unidentified enzyme with homology to Chronophin, a cytoskeletal regulatory HAD phosphatase. We have cloned and characterized this novel enzyme and named it AUM,for actin remodeling, ubiquitously expressed, magnesium-dependent HAD phosphatase. By Northern blot, real-time PCR and Western blot analysis, we show that AUM is broadly expressed in all major human and mouse tissues with highest levels found in testis. Using immunohistochemistry, we can show that AUM is specifically expressed in maturing germ cells and that its expression peaks during spermiogenesis. To characterize the substrate preference of AUM, we have conducted an in vitro phosphatase substrate screen with 720 phosphopeptides derived from human phosphorylation sites. AUM exclusively dephosphorylates phosphotyrosine (pTyr)-containing peptides. Furthermore, only 17 pTyr peptides (~2% of all pTyr peptides investigated) acted as AUM substrates, indicating a high degree of substrate specificity. Putative AUM substrates include proteins involved in cytoskeletal dynamics and tyrosine kinase signaling.In accordance with the phosphopeptide screen, phosphatase overlay assays employing whole-cell extracts of pervanadate-treated HeLa cells show that AUM dephosphorylates only a limited number of tyrosyl-phosphorylated proteins.The role of AUM for cellular signaling was investigated in response to epidermal growth factor (EGF) stimulation in a spermatogonial cell line (GC-1 spg). The overexpression of AUM reduces, whereas the RNAi-mediated depletion of endogenous AUM increases EGF inducedtyrosine phosphorylation, including changes in the phosphorylation of the EGF receptor itself. Interestingly, in vitro kinase/phosphatase assays with purified Src and AUM indicate that AUM can activate Src, which in turn phosphorylates and inactivates AUM. Although it is at present unclear how Src and AUM regulate each other, our initial findings suggests that AUM enhances Src kinase activity independently of its phosphatase activity, whereas Src diminishes AUM phosphatase activity in a kinase dependent manner. On a cellular level, AUM-depleted cells are characterized by altered actin cytoskeletal dynamics and adhesion, as indicated by stabilized actin filaments, enlarged focal adhesions,a marked increase in cell area of spreading cells, as well as accelerated cell spreading on fibronectin. Taken together, we have identified and characterized AUM as a novel member of the emerging family of aspartate-dependent protein tyrosine phosphatases. Our findings implicate AUM as an important regulator of Src-dependent cytoskeletal dynamics during cell adhesion and migration.
In this study poplar trees have been examined under different stress conditions. Apart from the detailed descriptions above two main conclusions might be drawn: i) A small plant like Arabidopsis thaliana is highly susceptible to stress situations that might become life-threatening compared to a tree that has extremely more biomass at its disposal. Such an organism might be able to compensate severe stress much longer than a smaller one. It seems therefore reasonable that a crop like Arabidopsis reacts earlier and faster to a massive threat. ii) In poplar both tested stress responses seemed to be regulated by hormones. The reactions to abiotic salt stress are mainly controlled by ABA, which also has a strong impact upon cold and drought stress situations. The term commonly used for ABA is “stress hormone” and is at least applicable to all abiotic stresses. In case of herbivory (biotic stress), jasmonic acid appears to be the key-player that coordinates the defence mechanism underlying extrafloral nectary and nectar production. Thus the presented work has gained a few more insights into the complex network of general stress induced processes of poplar trees. Future studies will help to understand the particular role of the intriguing indirect defence system of the extrafloral nectaries in more detail.
The Apologetic revisited: Exonerating Luke from an Ancestral Exegetical and Theological Burden
(2010)
The trend in the scholarship of Luke has been that of presenting Luke as a theologian interested in the survival of Christianity in the Roman world. Becuase of this aim, he seems to overlook the wrongdoings of the Powerful in his time inorder not to endanger the peace of Christianity. However, the intention of this work is to show the defiance and fearlessness of Luke in his dealings with the Rich and the Powerful. He never compromised with the basic teachings of Christianity. A second proper look opens the critical dynamics of his Gospel and the acts, beginning with the Magnificat running through the angelic annunciation scene and the temptation and ending with the punishment of Herod Agrippa in the Acts. The reader beholds a hitherto unknown Luke, who operates within a particular critical stance to the Powerful.
Reactive oxygen species (ROS) are continuously generated in cells and are involved in physiological processes including signal transduction but also their damaging effects on biological molecules have been well described. A number of reports in the literature implicate excessive oxidative stress and/or inadequate antioxidant defense in the pathogenesis of cancer, atherosclerosis, chronic and age related disorders. Several studies have indicated that activation of the renin-angiotensin-aldosterone-system can lead to the formation of ROS. Epidemiological studies have revealed higher renal cell cancer incidences and also higher cancer mortalities in hypertensive individuals. Recently, our group has shown that perfusion of the isolated mouse kidney with Ang II or treatment of several cell lines with Ang II leads to formation of DNA damage and oxidative base modifications. Here, we tried to scrutinize the pathway involved in genotoxicity of Ang II. We confirmed the genotoxicity of Ang II in two kidney cell lines of human origin. Ang II treatment led to the production of superoxide anions which we could hinder when we used the membrane permeable superoxide dismutase (SOD) mimetic TEMPOL. One of the enzymes which is activated in the cells after Ang II treatment and is able to produce ROS is NADPH oxidase. We demonstrated the activation of NADPH oxidase in response to Ang II by upregulation of its p47 subunit using RT-PCR. Also, pPhosphorylation of p47 subunit of NADPH oxidase after Ang II treatment was enhanced. Using two inhibitors we showed that NADPH oxidase inhibition completely prevents DNA damage by Ang II treatment. To differentiate between Nox2 and Nox4 isoforms of NADPH oxidase subunits in the genotoxicity of Ang II, we performed siRNA inhibition and found a role only for Nox4, while Nox2 was not involved. Next, we investigated PKC as a potential activator of NADPH oxidase. We showed that PKC becomes phosphorylated after Ang II treatment and also that inhibition of PKC hinders Ang II from damaging the cells. Our results from using several inhibitors of different parts of the pathway revealed that PKC activation in this pathway is dependent on the action of PLC on membrane phospholipids and production of IP3. IP3 binds to its receptor at endoplasmic reticulum (ER), opening a channel which allows calcium efflux into the cytoplasm. In this manner, both ER calcium stores and extracellular calcium cooperate so that Ang II can exert its genotoxic effect. PLC is activated by AT1R stimulation. We could also show that the genotoxicity of Ang II is mediated via AT1R signaling using the AT1R antagonist candesartan. In conclusion, here we have shown that Ang II is able to damage genomic damage in cell lines of kidney origin. The observed damage is associated with production of ROS. A decrease in Ang II-induced DNA damage was observed after inhibition of G-proteins, PLC, PKC and NADPH oxidase and interfering with intra- as well as extracellular calcium signaling. This leads to the following preliminary model of signaling in Ang II-induced DNA damage: binding of Ang II to the AT1 receptor activates PLC via stimulation of G-proteins, resulting in the activation of PKC in a calcium dependent manner which in turn, activates NADPH oxidase. NADPH oxidase with involvement of its Nox4 subunit then produces reactive oxygen species which cause DNA damage. Dopamine content and metabolism in the peripheral lymphocytes of PD patients are influenced by L-Dopa administration. The PD patients receiving a high dose of L-Dopa show a significantly higher content of dopamine in their lymphocytes compared to PD patients who received a low dose of L-Dopa or the healthy control. Central to many of the processes involved in oxidative stress and oxidative damage in PD are the actions of monoamine oxidase (MAO), the enzyme which is responsible for the enzymatic oxidation of dopamine which leadsing to production of H2O2 as a by-product. We investigated whether dopamine oxidation can cause genotoxicity in lymphocytes of PD patents who were under high dose L-Dopa therapy and afterward questioned the occurrence of DNA damage after dopamine treatment in vitro and tried to reveal the mechanism by which dopamine exerts its genotoxic effect. The frequency of micronuclei in peripheral blood lymphocytes of the PD patients was not elevated compared to healthy age-matched individuals, although the formation of micronuclei revealed a positive correlation with the daily dose of L-Dopa administration in patients who received L-Dopa therapy together with dopamine receptor agonists. In vitro, we describe an induction of genomic damage detected as micronucleus formation by low micromolar concentrations in cell lines with of different tissue origins. The genotoxic effect of dopamine was reduced by addition of the antioxidants TEMPOL and dimethylthiourea which proved the involvement of ROS production in dopamine-induced DNA damage. To determine whether oxidation of dopamine by MAO is relevant in its genotoxicity, we inhibited MAO with two inhibitors, trans-2-phenylcyclopropylamine hydrochloride (PCPA) and Ro 16-6491 which both reduced the formation of micronuclei in PC-12 cells. We also studied the role of the dopamine transporter (DAT) and dopamine type 2 receptor (D2R) signaling in the genotoxicity of dopamine. Inhibitors of the DAT, GBR-12909 and nomifensine, hindered dopamine-induced genotoxicity. These results were confirmed by treatment of MDCK and MDCK-DAT cells, the latter containing the human DAT gene, with dopamine. Only MDCK-DAT cells showed elevated chromosomal damage and dopamine uptake. Although stimulation of D2R with quinpirole in the absence of dopamine did not induce genotoxicity in PC-12 cells, interference with D2R signaling using D2R antagonist and inhibition of G-proteins, phosphoinositide 3 kinase and extracellular signal-regulated kinases reduced dopamine-induced genotoxicity and affected the ability of DAT to take up dopamine. Furthermore, the D2R antagonist sulpiride inhibited the dopamine-induced migration of DAT from cytosol to cell membrane. Overall, the neurotransmitter dopamine causes DNA damage and oxidative stress in vitro. There are also indications that high dose L-Dopa therapy might lead to oxidative stress. Dopamine exerts its genotoxicity in vitro upon transport into the cells and oxidization oxidation by MAO. Transport of dopamine by DAT has the central role in this process. D2R signaling is involved in the genotoxicity of dopamine by affecting activation and cell surface expression of DAT and hence modulating dopamine uptake. We provided evidences for receptor-mediated genotoxicity of two compounds with different mechanism of actions. The involvement of these receptors in many human complications urges more investigations to reveal whether abnormalities in the endogenous compounds-mediated signaling can play a role in the initiation of new conditions like carcinogenesis.
Cardiovascular disease is the most common mortality risk in the industrialized world. Myocardial infarction (MI) results in the irreversible loss of cardiac muscle, triggering pathophysiological remodelling of the ventricle and development of heart failure. Insufficient myocardial capillary density within the surviving myocardium after MI has been identified as a critical event in this process, although the underlying molecular signalling pathways of cardiac angiogenesis are mechanistically not well understood. The discovery of microRNAs (miRNAs, miRs), small non-coding RNAs with 19-25 nucleotides in length, has introduced a new level of the regulation of cardiac signalling pathways. MiRNAs regulate gene expression post-transcriptionally by binding to their complementary target messenger RNAs (mRNAs) and represent promising therapeutic targets for gene therapy. Here, it is shown that cardiac miR-24 is primarily expressed in cardiac endothelial cells and upregulated following MI in mice and hypoxic conditions in vitro. Enhanced miR-24 expression induces endothelial cell apoptosis and impairs endothelial capillary network formation. These effects on endothelial cell biology are at least in part mediated through targeting of transcription factor GATA2, histone deacetylase H2A.X, p21-activated kinase PAK4 and Ras p21 protein activator RASA1. Mechanistically, target repression abolishes respective and secondary downstream signalling cascades. Here it is shown that endothelial GATA2 is an important mediator of cell cycle, apoptosis and angiogenesis at least in part by regulation of cytoprotective heme oxygenase 1 (HMOX1). Moreover, additional control of endothelial apoptosis is achieved by the direct miR-24 target PAK4. Its kinase function is essential for anti-apoptotic Bad phosphorylation in endothelial cells. In a mouse model of MI, blocking of endothelial miR-24 by systemic administration of a specific antagonist (antagomir) enhances capillary density in the infarcted heart and preserves cardiac function. The current findings indicate miR-24 to act as a critical regulator of endothelial cell apoptosis and angiogenesis. Modulation of miR-24 may be potentially a suitable strategy for therapeutic intervention in the setting of ischemic heart diseases.
Members of the RAF protein kinase family are key regulators of diverse cellular processes. The need for isoform-specific regulation is reflected by the fact that all RAFs not only display a different degree of activity but also perform isoform-specific functions at diverse cellular compartments. Protein-protein-interactions and phosphorylation events are essential for the signal propagation along the Ras-RAF-MEK-ERK cascade. More than 40 interaction partners of RAF kinases have been described so far. Two of the most important regulators of RAF activity, namely Ras and 14-3-3 proteins, are subject of this work. So far, coupling of RAF with its upstream modulator protein Ras has only been investigated using truncated versions of RAF and regardless of the lipidation status of Ras. We quantitatively analyzed the binding properties of full-length B- and C-RAF to farnesylated H-Ras in presence and absence of membrane lipids. While the isolated Ras-binding domain of RAF exhibit a high binding affinity to both, farnesylated and nonfarnesylated H-Ras, the full-length RAF kinases demonstrate crucial differences in their affinity to Ras. In contrast to C-RAF that requires carboxyterminal farnesylated H-Ras for interaction at the plasma membrane, B-RAF also binds to nonfarnesylated H-Ras in the cytosol. For identification of the potential farnesyl binding site we used several fragments of the regulatory domain of C-RAF and found that the binding of farnesylated H-Ras is considerably increased in the presence of the cysteine-rich domain of RAF. In B-RAF a sequence of 98 amino acids at the extreme N terminus enables binding of Ras independent of its farnesylation status. The deletion of this region altered Ras binding as well as kinase properties of B-RAF to resemble C-RAF. Immunofluorescence studies in mammalian cells revealed essential differences between B- and C-RAF regarding the colocalization with Ras. In conclusion, our data suggest that that B-RAF, in contrast to C-RAF, is also accessible for nonfarnesylated Ras in the cytosolic environment due to its prolonged N terminus. Therefore, the activation of B-RAF may take place both at the plasma membrane and in the cytosolic environment. Furthermore, the interaction of RAF isoforms with Ras at different subcellular sites may also be governed by the complex formation with 14-3-3 proteins. 14-3-3 adapter proteins play a crucial role in the activation of RAF kinases, but so far no information about the selectivity of the seven mammalian isoforms concerning RAF association and activation is available. We analyzed the composition of in vivo RAF/14-3-3 complexes isolated from mammalian cells with mass spectrometry and found that B-RAF associates with a greater variety of 14-3-3 proteins than C- and A-RAF. In vitro binding assays with purified proteins supported this observation since B-RAF showed highest affinity to all seven 14-3-3 isoforms, whereas C-RAF exhibited reduced affinity to some and A-RAF did not bind to the 14-3-3 isoforms epsilon, sigma, and tau. To further examine this isoform specificity we addressed the question of whether both homo- and heterodimeric forms of 14-3-3 proteins participate in RAF signaling. By deleting one of the two 14-3-3 isoforms in Saccharomyces cerevisiae we were able to show that homodimeric 14-3-3 proteins are sufficient for functional activation of B- and C-RAF. In this context, the diverging effect of the internal, inhibiting and the activating C-terminal 14-3-3 binding domain in RAF could be demonstrated. Furthermore, we unveil that prohibitin stimulates C-RAF activity by interfering with 14-3-3 at the internal binding site. This region of C-RAF is also target of phosphorylation as part of a negative feedback loop. Using tandem MS we were able to identify so far unknown phosphorylation sites at serines 296 and 301. Phosphorylation of these sites in vivo, mediated by activated ERK, leads to inhibition of C-RAF kinase activity. The relationship of prohibitin interference with 14-3-3 binding and phosphorylation of adjacent sites has to be further elucidated. Taken together, our results provide important new information on the isoform-specific regulation of RAF kinases by differential interaction with Ras and 14-3-3 proteins and shed more light on the complex mechanism of RAF kinase activation.
The phylum Tardigrada consists of about 1000 described species to date. The animals live in habitats within marine, freshwater and terrestrial ecosystems allover the world. Tardigrades are polyextremophiles. They are capable to resist extreme temperature, pressure or radiation. In the event of desiccation, tardigrades enter a so-called tun stage. The reason for their great tolerance capabilities against extreme environmental conditions is not discovered yet. Our Funcrypta project aims at finding answers to the question what mechanisms underlie these adaption capabilities particularly with regard to the species Milnesium tardigradum. The first part of this thesis describes the establishment of expressed sequence tags (ESTs) libraries for different stages of M. tardigradum. From proteomics data we bioinformatically identified 144 proteins with a known function and additionally 36 proteins which seemed to be specific for M. tardigradum. The generation of a comprehensive web-based database allows us to merge the proteome and transcriptome data. Therefore we created an annotation pipeline for the functional annotation of the protein and nucleotide sequences. Additionally, we clustered the obtained proteome dataset and identified some tardigrade-specific proteins (TSPs) which did not show homology to known proteins. Moreover, we examined the heat shock proteins of M. tardigradum and their different expression levels depending on the actual state of the animals. In further bioinformatical analyses of the whole data set, we discovered promising proteins and pathways which are described to be correlated with the stress tolerance, e.g. late embryogenesis abundant (LEA) proteins. Besides, we compared the tardigrades with nematodes, rotifers, yeast and man to identify shared and tardigrade specific stress pathways. An analysis of the 50 and 30 untranslated regions (UTRs) demonstrates a strong usage of stabilising motifs like the 15-lipoxygenase differentiation control element (15-LOX-DICE) but also reveals a lack of other common UTR motifs normally used, e.g. AU rich elements. The second part of this thesis focuses on the relatedness between several cryptic species within the tardigrade genus Paramacrobiotus. Therefore for the first time, we used the sequence-structure information of the internal transcribed spacer 2 (ITS2) as a phylogenetic marker in tardigrades. This allowed the description of three new species which were indistinguishable using morphological characters or common molecular markers like the 18S ribosomal ribonucleic acid (rRNA) or the Cytochrome c oxidase subunit I (COI). In a large in silico simulation study we also succeeded to show the benefit for the phylogenetic tree reconstruction by adding structure information to the ITS2 sequence. Next to the genus Paramacrobiotus we used the ITS2 to corroborate a monophyletic DO-group (Sphaeropleales) within the Chlorophyceae. Additionally we redesigned another comprehensive database—the ITS2 database resulting in a doubled number of sequence-structure pairs of the ITS2. In conclusion, this thesis shows the first insights (6 first author publications and 4 coauthor publications) into the reasons for the enormous adaption capabilities of tardigrades and offers a solution to the debate on the phylogenetic relatedness within the tardigrade genus Paramacrobiotus.
China’s monetary policy aims to reach two final targets: a paramount economical target (i.e. price stability) and a less important political target (i.e. economic growth). The main actor of monetary policy is the central bank, the People’s Bank of China (PBC). But the PBC is a non-independent central bank. The State Council approves the goals of monetary policy. Very limited instrument independence means that interest rates cannot be set at the PBC’s discretion, and in-sufficient personal independence fails to insulate central bank officials from political influence. Monetary policy in China applies to two sets of monetary policy instruments: (i) instruments of the PBC; and (ii) non-central bank policy instruments. The instruments of the PBC include price-based indirect and quantity-based direct instruments. Non-central bank policy instruments include price and wage controls. The simultaneous usage of all these instruments leads to various distortions that ultimately prevent the interest rate channel of monetary transmission from functioning. Moreover, the strong influences of quantity-based direct instruments and non-central bank policy instruments bring into question the approach of indirect monetary policy in general. The PBC officially follows the monetary targeting approach with monetary aggregates as intermediate targets. Domestic loan growth and the exchange rate are defined as additional intermediate targets. In an in-depth analysis of the intermediate targets two main issues are primarily explored: (i) Are the intermediate targets of the Chinese monetary policy controllable? (ii) Is a sufficient relationship between these targets and the inflation rate observable? It is then shown that monetary aggregates are very difficult to control, but they have a satisfactory relationship with the inflation rate. Similarly, domestic loan growth is difficult to control – a fact largely attributed to the interest rate elasticity of loans – while there is a particularly close relationship between credit growth and the inflation rate. The exchange rate as an intermediate target can be controlled through foreign exchange market interventions; at the same time the exchange rate appears to have a significant relationship to the domestic inflation rate. Discussing the special issue of sterilizing foreign exchange inflows, the study concludes that between 2002 and 2008 not only no costs were incurred by sterilization operations, but that the central bank was actually able to realize a profit through foreign exchange market interventions. Based on this, it is concluded that the exchange rate target has not adversely affected the domestic orientation of monetary policy on the whole. The final part of the study examines whether there are any alternative monetary policy approaches that may be able to describe the policy approach in China; special focus is placed on nominal GDP targeting, the Taylor rule, and inflation targeting. A literature review reveals that the concept of nominal GDP targeting may be able to detect inflationary tendencies in the economy and, in combination with other indicators, it could be a suitable concept to assess the overall economic situation. The author calculates a Taylor rule for China from 1994 to 2008 and concludes that there is no close relationship between the PBC lending and the Taylor rate. The author then designs an augmented Taylor rule expanded to include a credit component (credit-augmented Taylor rule). The study shows that the augmented Taylor rule does not perform much better than the original one, but that it maps high inflationary periods relatively well. This is attributed to direct interventions into the credit markets, which have played a major role in combating inflationary cycles over the past decades. The analysis ends with an introduction of the concept of inflation targeting and an examination of whether this could describe monetary policy in China. It is clear that the PBC does not currently follow the inflation targeting approach, although the Chinese authorities could actually be able to influence inflation expectations effectively, not least through direct instruments such as price controls. The author notes that the PBC indeed had a good track record of fighting inflation between 1994 and 2008, and that this may now indicate a good time to think about introducing inflation targeting in China. The central conclusion of the study is that the proven gradual approach to economic and monetary reforms in China is reaching its limit. To break the vicious cycle that relies on the continuous use of quantity-based instruments to compensate for the ineffective price-based instruments – which in turn arises from the simultaneous use of both types of instruments – a complete shift away from quantity-based instruments is needed. Only then the approach of indirect monetary policy, which was officially introduced in 1998, could come into full play.
Vaccinia virus plays an important role in human medicine and molecular biology ever since the 18th century after E. Jenner discovered its value as a vaccination virus against smallpox. After the successful eradication of smallpox, vaccinia virus, apart from its use as a vaccine carrier, is today mainly used as a viral vector in molecular biology and increasingly in cancer therapy. The capability to specifically target and destroy cancer cells makes it a perfect agent for oncolytic virotherapy. Furthermore, the virus can easily be modified by inserting genes encoding therapeutic or diagnostic proteins to be expressed within the tumor. The emphasis in this study was the diagnosis of tumors using different vaccinia virus strains. Viruses with metal-accumulating capabilities for tumor detection via MRI technology were generated and tested for their usefulness in cell culture and in vivo. The virus strains GLV-1h131, GLV-1h132, and GLV-1h133 carry the gene encoding the two subunits of the iron storage protein ferritin under the control of three different promoters. GLV-1h110, GLV-1h111, and GLV-1h112 encode the bacterial iron storage protein bacterioferritin, whereas GLV-1h113 encodes the codon-optimized version of bacterioferritin for more efficient expression in human cells. GLV-1h22 contains the transferrin receptor gene, which plays an important role in iron uptake, and GLV-1h114 and GLV-1h115 contain the murine transferrin receptor gene. For possibly better iron uptake the virus strains GLV-1h154, GLV-1h155, GLV-1h156, and GLV-1h157 were generated, each with a version of a ferritin gene and a transferrin receptor gene. GLV-1h154 carries the genes that encode bacterioferritin and human transferrin receptor, GLV-1h155 the human ferritin H-chain gene and the human transferrin receptor gene. GLV-1h156 and GLV-1h157 infected cells both express the mouse transferrin receptor and bacterioferritin or human ferritin H-chain, respectively. The virus strains GLV-1h186 and GLV-1h187 were generated to contain a mutated form of the ferritin light chain, which was shown to result in iron overload and the wildtype light chain gene, respectively. The gene encoding the Divalent Metal Transporter 1, which is a major protein in the uptake of iron, was inserted in the virus strain GLV-1h102. The virus strain GLV-1h184 contains the magA gene of the magnetotactic bacterium Magnetospirillum magnetotacticum, which produces magnetic nanoparticles for orientation in the earth’s magnetic field. Initially the infection and replication capability of all the virus strains were analyzed and compared to that of the parental virus strain GLV-1h68, revealing that all the viruses were able to infect cells of the human cancer cell lines A549 and GI-101A. All constructs exhibited a course of infection comparable to that of GLV-1h68. Next, to investigate the expression of the foreign proteins in GI-101A and A549 cells with protein analytical methods, SDS-gelelectrophoresis, Western blots and ELISAs were performed. The proteins, which were expressed under the control of the strong promoters, could be detected using these methods. To be able to successfully detect the protein expression of MagA and DMT1, which were expressed under the control of the weak promoter, the more sensitive method RT-PCR was used to at least confirm the transcription of the inserted genes. The determination of the iron content in infected GI-101A and A549 cells showed that infection with all used virus strains led to iron accumulation in comparison to uninfected cells, even infection with the parental virus strain GLV-1h68. The synthetic phytochelatin EC20 was also shown to enhance the accumulation of different heavy metals in bacterial cultures. In vivo experiments with A549 tumor-bearing athymic nude mice revealed that 24 days post infection virus particles were found mainly in the tumor. The virus-mediated expression of recombinant proteins in the tumors was detected successfully by Western blot. Iron accumulation in tumor lysates was investigated by using the ferrozine assay and led to the result that GLV-1h68-infected tumors had the highest iron content. Histological stainings confirmed the finding that iron accumulation was not a direct result of the insertion of genes encoding iron-accumulating proteins in the virus genome. Furthermore virus-injected tumorous mice were analyzed using MRI technology. Two different measurements were performed, the first scan being done with a seven Tesla small animal scanner seven days post infection whereas the second scan was performed using a three Tesla human scanner 21 days after virus injection. Tumors of mice injected with the virus strains GLV-1h113 and GLV-1h184 were shown to exhibit shortened T2 and T2* relaxation times, which indicates enhanced iron accumulation. In conclusion, the experiments in this study suggest that the bacterioferritin-encoding virus strain GLV-1h113 and the magA-encoding virus strain GLV-1h184 are promising candidates to be used for cancer imaging after further analyzation and optimization.
In this thesis the electronic and magnetic structure of the transition metal oxyhalides TiOCl, TiOBr and VOCl is investigated. The main experimental methods are photoemission (PES) and x-ray absorption (XAS) spectroscopy as well as resonant inelastic x-ray scattering (RIXS). The results are compared to density-functional theory, and spectral functions from dynamical mean-field theory and different kinds of model calculations. Questions addressed here are those of the dimensionality of the magnetic and electronic interactions, the suitability of the oxyhalides as prototypical strongly correlated model systems, and the possibility to induce a filling-controlled insulator-metal transition. It turns out that TiOCl is a quasi-one-dimensional system with non-negligible two-dimensional coupling, while the one-dimensional character is already quite suppressed in TiOBr. In VOCl no signatures of such one-dimensional behavior remain, and it is two-dimensional. In all cases, frustrations induced by the crystal lattice govern the magnetic and electronic properties. As it turns out, although the applied theoretical approaches display improvements compared to previous studies, the differences to the experimental data still are at least partially of qualitative instead of quantitative nature. Notably, using RIXS, it is possible for the first time in TiOCl to unambiguously identify a two-spinon excitation, and the previously assumed energy scale of magnetic excitations can be confirmed. By intercalation of alkali metal atoms (Na, K) the oxyhalides can be doped with electrons, which can be evidenced and even quantified using x-ray PES. In these experiments, also a particular vertical arrangement of dopants is observed, which can be explained, at least within experimental accuracy, using the model of a so-called "polar catastrophe". However, no transition into a metallic phase can be observed upon doping, but this can be understood qualitatively and quantitatively within an alloy Hubbard model due to the impurity potential of the dopants. Furthermore, in a canonical way a transfer of spectral weight can be observed, which is a characteristic feature of strongly correlated electron systems. Overall, it can be stated that the transition metal oxyhalides actually can be regarded as prototypical Mott insulators, yet with a rich phase diagram which is far from being fully understood.
The inhaled pharmacotherapy is fundamental in the management of obstructive lung diseases such as asthma bronchiale or chronic obstructive pulmonary disease. In this context short- and long-acting β2-agonists play a prominent role as relieve and control medication. Regarding the risk-benefit profile of an inhaled drug, the pattern of pulmonary deposition and the rate and extent of absorption into systemic circulation are essential parameters. New developments of drugs are characterized by high lung retention and improved efficacy. The aim of the present thesis was the parallel evaluation the pharmacokinetic (PK) and -dynamic (PD) properties of inhaled β2-agonists employing an isolated human lung perfusion model (IPL). The short-acting β2-agonist salbutamol and the newly developed ultra long-acting β2-agonist GW597901 were chosen for the analysis of pulmonary drug absorption and bronchodilation. In a pharmacokinetic enabling study an established human IPL setting was modified to monitor the pharmacokinetics of the β2-agonists by measuring the concentrations in perfusion fluid, lung tissue and BAL samples obtained during and after the experiments. The IPL model revealed differences in the pulmonary absorption behaviour of GW597901 and salbutamol. The lipophilic compound GW597901 was distributed to a lower extent into the perfusion fluid compared to the more hydrophilic compound salbutamol. The analyzed time profiles of nebulized salbutamol in the perfusate were consistent to with a clinical study if considering experimental conditions as the actual deposited doses and the differing volume of distribution. Thus, the suitability of the IPL model for the PK analysis of inhaled β2-agonists was confirmed. In a PK/PD study the human ex vivo model was employed for the first time for the evaluation of the clinical relevant bronchodilating effect induced by inhaled β2-agonists in addition to the analysis of their pharmacokinetics. Thereby the focus was to determine the onset and extent of bronchodilation. A new method was established to monitor changes in lung function parameters due to pharmacodynamic interventions over the duration of the experiment that allowed permanent online recording of the ventilation volume and lung mechanic parameters. Bronchial challenges with aerolised MCh were performed successfully in isolated ventilated human lung lobes, even though the responder rate was lower than expected despite high administered doses. The administration of the short acting agent salbutamol led to an immediate onset of action recognized as a sudden increase of the ventilation volumes. The bronchodilation following the application of GW597901 was observed delayed after about 6 min. Monitored lung function parameters considerably improved by both β2 - agonists in the IPL setting but not significantly different. Thus, in regard of the different applied doses GW597901 had a higher intrinsic activity and bronchodilating potency than salbutamol. The concentrations of salbutamol and GW597901 in the perfusate determined in the PK/PD study were significantly lower than those observed in the pharmacokinetic enabling study, while the tmax values and the course of the distribution profiles remained similar. Most likely, the application of nebulized MCh prior to the administration of the β2 - agonists had a substantial influence on their pharmacokinetic behaviour. It is yet not clear whether pharmacodynamic effects or molecular competition processes for the passage to the systemic circulation or both influenced the redistribution of the β2 - agonists as seen in the PK/PD study. The potential clinical relevance of this observation has to be further investigated. The development of pulmonary edema during the experiment was one limitation of the IPL model. For the determination of the onset of edema formation four potential biochemical markers, specifically surfactant-protein A (SP-A), angiotensin-converting enzyme (ACE), urea and lactate dehydrogenase, were measured in perfusion fluids. In this context, an ELISA method for the quantification of human SP-A in biological matrices was successfully established. The investigations showed that the concentrations of SP-A and ACE in the perfusate increased over time as a sign for lung tissue damage and correlated with the degree of edema formation. For the first time the IPL model was used for the evaluation of potential pulmonary edema marker and the results have shown that it is valuable tool for further investigations in this field. In conclusion, the pharmacokinetic and pharmacodynamic characterization of GW597901 and salbutamol was successfully achieved using the IPL model. This ex vivo methodology may contribute to further insights and understanding of the complex pharmacokinetic processes of inhaled β2 – agonists in the lung.
Inoculation with plant pathogens induces a diverse range of plant responses which potentially contribute to disease resistance or susceptibility. Plant responses occuring in consequence of pathogen infection include activation of classical defence pathways and changes in metabolic activity. The main defence route against hemibiotrophic bacterial pathogens such as Pseudomonas syringae is based on the phytohormone salicylic acid (SA). SA-mediated responses are strictly regulated and have also been shown to depend on external factors, e.g. the presence of light. A major goal of this work was to provide a better understanding of the light dependency of plant defence responses mediated through SA. The second part of the project focussed on the influence of plant sterols on plant resistance. I analyzed leaf lipid composition and found that accumulation of the phytosterol stigmasterol in leaves and in isolated (plasma) membranes is a significant plant metabolic process occurring upon pathogen infection.
Termites are the most important soil ecosystem engineers of semi‐arid and arid habitats. They enhance decomposition processes as well as the subsequent mineralisation of nutrients by bacteria and fungi. Through their construction of galleries, nests and mounds, they promote soil turnover and influence the distribution of nutrients and also alter texture and hydrological properties of soils, thereby affecting the heterogeneity of their ecosystem. The main aim of the present thesis was to define the impact of termites on ecosys‐tem functioning in a semi‐arid ecosystem. In a baseline study, I assessed the diversity of termite taxa in relation to the amount of precipitation, the vegetation patterns and the land use systems at several sites in Namibia. Subsequently, I focussed on a species that is highly abundant in many African savannas, the fungus growing and mound building species Macro‐termes michaelseni (Sjöstedt, 1914). I asked how this species influences the spatial hetero‐geneity of soil and vegetation patterns. From repeated samplings at 13 sites in Namibia, I obtained 17 termite taxa of 15 genera. While the type of land use seems to have a minor effect on the termite fauna, the mean annual precipitation explained 96% and the Simpson index of vascular plant diversity 81% of the variation in taxa diversity. The number of termite taxa increased with both of these explanation variables. In contrast to former studies on Macrotermes mounds in several regions of Africa that I reviewed, soil analyses from M. michaelseni mounds in the central Namibian savanna revealed that they contain much higher nitrogen contents when compared to their parent material. Further analyses revealed that nitrate forms a major component of the nitrogen content in termite mounds. As nitrate solves easily in water, evaporation processes are most probably responsible for the transport of solved nitrates to the mound surface and their accumulation there. The analysed mounds in central Namibia contained higher sand propor‐tions compared to the mounds of the former studies. Through the higher percentage of coarse and middle sized pores, water moves more easily in sandy soils compared to more clayey soils. In consequence, evaporation‐driven nitrate accumulation can occur in the studied mounds at high rates. Hochgerechnet auf den Gesamtumfang der Hügel bedeckte das pro Jahr von einem bewohnten Hügel erodierte Material theoretisch einen 1 m breiten Kreisring um den Schwemmkegel des Hügels 2,4 mm hoch. Der entsprechende Wert für unbewohnte Hügel betrug 1,0 mm. To assess the amount of soil that erodes from termite mounds, I fastened four strong, 65 cm wide plastic bags at 14 mounds each and collected the soil that eroded during five rainfall events. Projected to the total mound circumference, the amount of soil eroded covers theoretically a 1 m wide circular ring around the pediment of an inhabited mound up to a height of 2.4 mm per year. For uninhabited mounds, the height of this soil layer would be 1.0 mm. Per hectare, roughly 245 kg eroded per year from the mounds. However, as the erosion rate depends on several factors such as rainfall intensity, soil texture and point of time within the rainy season, this is only a vague estimate. In order to determine up to which distance the soil erosion from the mounds still influences the chemical characteristics of the adjacent topsoil, I took samples from depth of 0–10 cm at 1, 5 and 25 m distances, respectively, from four different mounds and from the mounds themselves. The non‐metric multidimensional scaling of the soil properties showed strong differences between mound and off‐mound samples. Soil characteristics within the samples from the mounds did not differ largely. Similarly, I found no strong differences between the samples taken from the different distances from the mound. From these results I conclude that through the construction of foraging galleries and sheetings (soil constructions with which some termite species cover their food items), the soil eroding from termite mounds is quickly mixed with deeper soil layers. In consequence, mound material does not accumulate in the mound’s vicinity. In order to reveal how plant growth is influenced by termite mound material, we assessed the number of grass and herb individuals as well as the biomass of plants growing in situ on the base of mounds compared to adjacent sites. While the numbers of both grass and herb individuals were significantly lower compared to adjacent sites, the total biomass of plants growing on the base of mounds was significantly higher. Reverse results were obtained by pot experiments with radish (Raphanus sativus subsp. sativus) and sorghum (Sorghum sp.) growth. Both species grew significantly weaker on mound soil compared to adjacent soil. The contradictory results concerning the biomass of in situ and pot experi‐ments are most probably caused by the disturbance of the original soil structure during the potting process. The material was subsequently compacted through watering the plants. In contrast, Macrotermes mounds are pervaded by many macropores which seem to be essential for the plant roots to penetrate the soil. In the last part of this thesis, I posed the question how mounds of M. michaelseni are distributed and what factors might be responsible for this pattern. Former studies showed that mound size is correlated with the size of its inhabiting colony. With several multi‐scale analyses, I revealed that larger inhabited mounds were regularly distributed. Additionally, mounds which were closer together tended to be smaller than on average. This indicates that intraspecific competition controls the distribution and size of colonies and their mounds. Former studies concerning Odontotermes mounds substantiated that they are local hotspots of primary productivity and animal abundance. Based on these findings, simulations revealed that a regular distribution of these mounds leads to a greater ecosystem‐wide productivity compared to a random arrangement. As in the present study, plant biomass was higher at the mounds compared to off‐mound sites, this might hold true for M. michaelseni mounds. From the results of this thesis, I draw the conclusion that through their mound building activities, M. michaelseni strongly influences the distribution patterns of soil nutrients within the central Namibian savanna. These termites create sharp contrasts in nutrient levels and vegetation patterns between mound soils and off‐mound soils and enhance the heterogeneity of their habitats. Former studies revealed that habitat hetero‐geneity is important in generating species diversity and species richness in turn is correlated positively with biomass production and positively affects ecosystem services. In conclusion, the present thesis underlines the importance of M. michaelseni for ecosystem functioning of the central Namibian savanna.
Starting off with solubility experiments of possible precursors, the present study reveals the whole development of a sol gel processing route for transparent p type semiconductive thin films with delafossite structure right to the fabrication of functional p-n junctions. The versatile sol formulation could successfully be modified for several oxide compositions, enabling the synthesis of CuAlO2, CuCrO2, CuMnO2, CuFeO2 and more. Although several differences in the sintering behaviour of powders and thin films could be observed, the powder experiments significantly contributed to the clearification of the intricate phase development during thermal annealing and also to optimization of the annealing sequence for thin film processing. Two different ternary systems turned out to be the most promising candidates for p-TCO application: Copper aluminum oxide for its high optical transmittance and copper chromium oxide for its low synthesis temperature, which allowed thin film deposition on low-cost borosilicate substrates. In order to combine the advantages of these two systems, the quaternary oxide composition CuAl1-xCrxO2 was investigated. With a higher optical transmittance than CuCrO2, a lower synthesis temperature than CuAlO2 and a lower resistivity than both parent systems, the optimum composition of the quaternary oxide is reached for x = 0.50. Compared to physical vapour deposition techniques, the undoped thin films presented here still need to make up some deficites in their optoelectronic performance. Although the best sol-gel samples are able to compete with RF sputtered samples or sampes deposited by PLD in transmittance, their resistivity is almost two orders of magnitude higher. The most probable reasons for this are the characteristic imperfections of sol-gel thin films like porosity and small crystallite size, which create barriers like grain boundaries and bottlenecks like barely connected particles. By additional effort such shortcomings can be repelled to a certain extend, but nevertheless the density of undoped sol-gel material always stays behind its pendants processed by physical vapour deposition.[246] Furthermore, such additional endeavour is likely to annihilate the advantage of sol-gel technique in processing costs. Extrinsic doping is a common method to decrease the resistivity of delafossite materials. Partially replacing the trivalent cations by divalent ones creates additional holes and thus generates additional charge carriers for p-type semiconductivity. This can improve the conductivity of delafossites by up to three orders of magnitude. Due to the compositorial flexibility of sol-gel processing, dopants could be introduced easily in this study by soluble precursors. However, improving the conductivity of CuAlO2 and CuAl0.5Cr0.5O2 via this method failed. Actually, this seems to be due to the fact that instead of being incorporated into the delafossite phase the dopant ions form intransparent phase impurities like spinels, which interfere with optical transmittance of the thin films. On the contrary, doping had a positive effect on the conductivity and the optical transmittance of copper chromium oxide, with magnesium being the most effective dopant. The resistivity could be decreased by more than three orders of magnitude, but in order to achieve this, much higher Mg concentrations than by other thin film deposition methods were necessary. This indicates a low doping efficiency in sol gel processed thin films, but also the ability of sol gel processing to incorporate more magnesium into the oxide than any other processing method. The extensive substitution of the chromium ions also increases the optical transmittance and allows sol gel processed thin films to draw level with thin films deposited by sputtering methods or PLD. Finally, the applicability of the delafossite thin films was proven by the asymmetric current voltage characteristics of heterojunctions between ITO and the delafossites. Shunting problems of the metallic contacts, on the other hand, reveal structural deficites of the delafossites, which should be the subject of further investigations.
Ruptures of the anterior cruciate ligament (ACL) and defects of the rotator cuff represent the most common ligament and tendon injuries in knee and shoulder. Both injuries represent significant implications for the patients. After an injury, the ACL and the rotator cuff both exhibit poor intrinsic healing capacities. In order to prevent further defects such as arthritis of the knee and fatty infiltration of the rotator cuff, surgical interaction is essential. In both cases, the currently used surgical techniques are far from optimal because even after the therapy many patients report problems ranging from pain and reduced mobility to complete dysfunction of the involved joint and muscles. Tissue engineering may be a possible solution. It is a promising field of regenerative medicine and might be an advantageous alternative for the treatment of musculoskeletal injuries and diseases in the near future. In this thesis, different tissue engineering based approaches were investigated. For the reconstruction of damaged or diseased ligaments and tendons, the use of MSCs and gene therapy with growth factors is especially suitable and possesses a great therapeutic potential. Therefore, the first method studied and tested in this thesis was the development of a biomaterial based construct for the repair of a ruptured ACL. The second approach represents a cell based strategy for the treatment of the fatty infiltration in the rotator cuff. The third approach was a combined cell, biomaterial, and growth factor based strategy for ACL ruptures. Biomaterial based ACL construct The implant is currently tested in a preclinical in vivo study in mini pigs. This proof-of-principle study is performed to validate the functional capability of the collagen fiber based implant under load in vivo and its population with fibroblasts which produce a ligamentogenic matrix. Cell based treatment of the fatty infiltration in the rotator cuff Regarding the treatment of the fatty infiltration of the rotator cuff in a rabbit model, the in vivo results are also promising. The group treated with autologous MSCs (+MSC group) showed a lower fat content than the untreated group (–MSC group) 6 weeks after the treatment. Furthermore, the SSP muscle of the MSC-treated animals revealed macroscopically and microscopically only few differences compared to the healthy control group. The exact underlying mechanisms leading to the positive results of the treatment are not yet fully understood and have therefore to be further investigated in the future. Cell, biomaterial, and growth factor based treatment of ACL ruptures Studies described in current literature show that collagen hydrogel scaffolds are not ideal for a complete ligament or tendon reconstruction, because of their insufficient mechanical stability. Introduced as an alternative and superior therapy, the combined strategy used in this thesis proves that the cultivation of BMP-12, -13, and IGF-1 transduced MSCs and ACL fibroblasts in a collagen hydrogel is successful. The results of the performed in vitro study reveal that the cells exhibit a fibroblastic appearance and produce a ligamentogenic matrix after 3 weeks. Furthermore, the adenoviral transduction of MSCs and ACL fibroblasts showed no negative effects on proliferation or viability of the cells nor was apoptosis caused. Therefore, the application of these cells represents a possible future therapy for a partial ligament and tendon rupture where the mechanical stability of the remaining ligament or tendon is sufficient and the healing can be improved substantially by this therapy. In general, prospective randomized clinical trials still have to prove the postulated positive effect of MSCs for the treatment of various musculoskeletal diseases, but the results obtained here are already very promising. Ideally, the treatment with MSCs is superior compared to the standard surgical procedures. Because of current safety issues the use of genetically modified cells cannot be expected to be applied clinically in the near future. In summary, the different tissue engineering approaches for novel therapies for musculoskeletal injuries and diseases invested in this thesis showed very promising results and will be further developed and tested in preclinical and clinical trials.
Integrating neurobiological markers of depression: an fMRI-based pattern classification approach
(2010)
While depressive disorders are, to date, diagnosed based on behavioral symptoms and course of illness, the interest in neurobiological markers of psychiatric disorders has grown substantially in recent years. However, current classification approaches are mainly based on data from a single biomarker, making it difficult to predict diseases such as depression which are characterized by a complex pattern of symptoms. Accordingly, none of the previously investigated single biomarkers has shown sufficient predictive power for practical application. In this work, we therefore propose an algorithm which integrates neuroimaging data associated with multiple, symptom-related neural processes relevant in depression to improve classification accuracy. First, we identified the core-symptoms of depression from standard classification systems. Then, we designed and conducted three experimental paradigms probing psychological processes known to be related to these symptoms using functional Magnetic Resonance Imaging. In order to integrate the resulting 12 high-dimensional biomarkers, we developed a multi-source pattern recognition algorithm based on a combination of Gaussian Process Classifiers and decision trees. Applying this approach to a group of 30 healthy controls and 30 depressive in-patients who were on a variety of medications and displayed varying degrees of symptom-severity allowed for high-accuracy single-subject classification. Specifically, integrating biomarkers yielded an accuracy of 83% while the best of the 12 single biomarkers alone classified a significantly lower number of subjects (72%) correctly. Thus, integrated biomarker-based classification of a heterogeneous, real-life sample resulted in accuracy comparable to the highest ever achieved in previous single biomarker research. Furthermore, investigation of the final prediction model revealed that neural activation during the processing of neutral facial expressions, large rewards, and safety cues is most relevant for over-all classification. We conclude that combining brain activation related to the core-symptoms of depression using the multi-source pattern classification approach developed in this work substantially increases classification accuracy while providing a sparse relational biomarker-model for future prediction.
Taxonomy and palaeoecology of the Cenomanian-Turonian macro-invertebrate from eastern Sinai, Egypt
(2010)
The present study concerened with taxonomy and palaeoecology of the Cenomanian-Turonian macrobenthic fauna which includes bivalves, gastropods, echinoids, and coral. In addtion, cephalopods are also taken in consideration. 144 taxa are identified and systematically described. Palaeoecological and taphonomic anylsis of the statistically sampled macrobenthos are also discussed. The biostratigraphic sequences along the Cenomanian-Turonian rocks were carried out on the basis of ammonites and other macrobenthic fauna such as corals and bivalves. In order to reconstruct benthic association, 41 statistically sampled were subjected to cluster ananlysis by using Past Programm (Hammer et al., 2001). 10 association and three assemblages were described in order to reconstruct the different depositional enviroments.
Bone Morphogenetic Proteins (BMPs) are secreted multifunctional signaling proteins that play an important role during development, maintenance and regeneration of tissues and organs in almost all vertebrates and invertebrates. BMPs transmit their signals by binding to two types of serine-/threonine-kinase receptors. BMPs bind first to their high affinity receptor, thereby recruiting their low affinity receptor into the complex. This receptor assembly starts a Smad (Small mothers against decapentaplegic) protein signaling cascade which regulates the transcription of responsive genes. Up to date, only seven type I and five type II receptors are known for more than 30 ligands. Therefore, many BMP ligands can recruit more than one receptor subtype. Vice versa, receptors can bind to several ligands, indicating a highly promiscuous ligand-receptor interaction. This raises the following questions: (i) How are BMPs able to induce ligand-specific signals, despite forming complexes with identical receptor composition and (ii) how are they able to recognize and bind various binding partners in a highly specific manner. From the ligand’s point of view, heterodimeric BMPs are valuable tools for studying the interplay between different sets of receptors, thereby providing new insights into how the various BMP signals can be generated. This study describes the expression and purification of the heterodimers BMP-2/6 and -2/7 from E.coli cells. BIAcore interaction studies and various in vitro cell activity assays revealed that the generated heterodimers are biologically active. Furthermore, BMP-2/6 and -2/7 exhibit a higher biological activity in most of the cell assays compared to their homodimeric counterparts. In addition, the BMP type I receptor BMPR-IA is involved in heterodimeric BMP signaling. However, the usage of other type I receptor subtypes (e.g. ActR-I) building a heteromeric ligand-receptor type I complex as indicated in previous works could not be determined conclusively. Furthermore, BMP heterodimers seem to require only one type I receptor for signaling. From the receptors’ point of view, the BMP type I receptor BMPR-IA is a prime example for its promiscuous binding to different BMP ligands. The extracellular binding interface of BMPR-IA is mainly unfolded in its unbound form, requiring a large induced fit to adopt the conformation when bound to its ligand BMP-2. In order to unravel whether the binding promiscuity of BMPR-IA is linked to structural plasticity of its binding interface, the interaction of BMPR-IA bound to an antibody Fab fragment was investigated. The Fab fragment was selected because of its ability to recognize the BMP-2 binding epitope on BMPR-IA, thus neutralizing the BMP-2 mediated receptor activation. This study describes the crystal structure of the complex of the extracellular domain of BMPR-IA bound to the antibody Fab fragment AbyD1556. The crystal structure revealed that the contact surface of BMPR-IA overlaps extensively with the contact surface of BMPR-IA for BMP-2 interaction. Although the contact epitopes of BMPR-IA to both binding partners coincide, the three-dimensional structures of BMPR-IA in both complexes differ significantly. In contrast to the structural differences, alanine-scanning mutagenesis of BMPR-IA showed that the functional determinants for binding to both the antibody and BMP-2 are almost identical. Comparing the structures of BMPR-IA bound to BMP-2 or to the Fab AbyD1556 with the structure of unbound BMPR-IA revealed that binding of BMPR-IA to its interaction partners follows a selection fit mechanism, possibly indicating that the ligand promiscuity of BMPR-IA is inherently encoded by structural adaptability.
The saprophytic filamentous fungus Aspergillus fumigatus has been gaining importance as an opportunistic human pathogen over the past decades. Advances in modern medicine have created a growing group of patients susceptible to infection with A. fumigatus, often contracting potentially deadly invasive aspergillosis. The virulence of this pathogen appears to be a multifactorial trait, a combination of physiological characteristics that enables the fungus to infect immunocompromised humans. This work concentrates on the nitrogen metabolism of A. fumigatus, which is essential for meeting the nutritional needs inside the human host. Using DNA microarrays, the transcriptional response during growth on three different secondary nitrogen sources was examined, which revealed the metabolic versatility of A. fumigatus, especially when challenged with proteins as the sole source of nitrogen. In-depth transcriptional profiling of the eight-member oligopeptide transporter (OPT) gene family underlined the importance of oligopeptide transport for growth on complex nitrogen sources like BSA or collagen. Heterologous expression of the opt genes in Saccharomyces cerevisiae showed their functionality as oligopeptide transporters, and characterized their substrate specificity. Using a Cre/loxP based genetic tool, a complete deletion of all opt genes in A. fumigatus was achieved. The resultant strain exhibited diminished growth on medium where the oligopeptide GPGG was the sole nitrogen source, but did not show any other in vitro phenotype. The opt deletion strain was not attenuated in virulence in a murine model of pulmonary aspergillosis, suggesting that the OPT gene family is not necessary for successful infection. The connection of oligopeptide transport and extracellular proteolytic activity was investigated by deleting the genes encoding Dpp4 and Dpp5, two dipeptidyl peptidases, or PrtT, the transcriptional regulator of major secreted proteases, in the complete opt deletion background. In contrast to the deletion of dpp4 and dpp5, which did not result in any additional phenotype, the absence of prtT led to a drastic growth defect on porcine lung agar. This suggests a synergistic action of extracellular proteolytic digest of proteins and transport of oligopeptide degradation products into the cell. Finally, this work established the bacterial β-Rec/six site-specific recombination system as a novel genetic tool for targeted gene deletion in A. fumigatus.
Development of novel Listeria monocytogenes strains as therapeutic agents for targeted tumor therapy
(2010)
Despite marked progress in development and improvement of cancer therapies the rate of cancer related death remained stable over the last years. Especially in treating metastases alternative approaches supporting current therapies are required. Bacterial and viral vectors have been advanced from crude tools into highly sophisticated therapeutic agents detecting and treating neoplastic leasions. They might be potent enough to fill in this therapeutic demand. In this thesis Listeria monocytogenes was investigated as carrier for targeted bacterial cancer therapy. One part of the study focussed on modification of a functional bacterial mRNA delivery system. Genomic integration of T7 RNA polymerase driving mRNA production allowed reduction to an one-plasmid-system and thereby partially relieved the growth retardation exerted by mRNA delivery. Importantly the integration allowed metabolic attenuation of the mRNA delivery mutant potentially enabling in vivo applications. Further expansion of the bacterial RNA delivery system for transfer of shRNAs was examined. Bacterial mutants producing high amounts of RNA containing shRNA sequences were constructed, however a functional proof of gene silencing on delivery in eukaryotic cell lines was not achieved. The second part of this thesis focussed on increasing tumor colonization by Listeria monocytogenes in vivo. Coating bacteria with antibodies against receptors overexpressed on distinct tumor cell lines enabled specific bacterial internalization into these cells in vitro. Optimization of the bacterial antibody coating process resulted in an up to 104-fold increase of intracellular bacteria. Combination of this antibody-mediated targeting with the delivery of prodrug-converting enzymes showed a cytotoxic effect in cell lines treated with the corresponding prodrug. Since incubation in murine serum completely abrogated antibodymediated bacterial internalization the antibodies were covalently linked to the bacteria for application in xenografted tumor mice. Bacteria coated and crosslinked in this manner showed enhanced tumor targeting in a murine tumor model demonstrating antibodymediated bacterial tumor targeting in vivo. Independent of antibody-mediated tumor targeting the intrinsic tumor colonization of different Listeria monocytogenes mutants was examined. Listeria monocytogenes ΔaroA ΔinlGHE colonized murine melanoma xenografts highly efficient, reaching up to 108 CFU per gram of tumor mass 7 days post infection. Taken together the presented data shows highly promising aspects for potential bacterial application in future tumor therapies. Combination of the delivery systems with antibodymediated- and intrinsic bacterial tumor targeting might open novel dimensions utilizing Listeria monocytogenes as therapeutic vector in targeted tumor therapy.
The urban micro climate has been increasingly recognised as an important aspect for urban planning. Therefore, urban planners need reliable information on the micro climatic characteristics of the urban environment. A suitable spatial scale and large spatial coverage are important requirements for such information. This thesis presents a conceptual framework for the use of airborne hyperspectral data to support urban micro climate characterisation, taking into account the information needs of urban planning. The potential of hyperspectral remote sensing in characterising the micro climate is demonstrated and evaluated by applying HyMap airborne hyperspectral and height data to a case study of the German city of Munich. The developed conceptual framework consists of three parts. The first is concerned with the capabilities of airborne hyperspectral remote sensing to map physical urban characteristics. The high spatial resolution of the sensor allows to separate the relatively small urban objects. The high spectral resolution enables the identification of the large range of surface materials that are used in an urban area at up to sub-pixel level. The surface materials are representative for the urban objects of which the urban landscape is composed. These spatial urban characteristics strongly influence the urban micro climate. The second part of the conceptual framework provides an approach to use the hyperspectral surface information for the characterisation of the urban micro climate. This can be achieved by integrating the remote sensing material map into a micro climate model. Also spatial indicators were found to provide useful information on the micro climate for urban planners. They are commonly used in urban planning to describe building blocks and are related to several micro climatic parameters such as temperature and humidity. The third part of the conceptual framework addresses the combination and presentation of the derived indicators and simulation results under consideration of the planning requirements. Building blocks and urban structural types were found to be an adequate means to group and present the derived information for micro climate related questions to urban planners. The conceptual framework was successfully applied to a case study in Munich. Airborne hyperspectral HyMap data has been used to derive a material map at sub-pixel level by multiple endmember linear spectral unmixing. This technique was developed by the German Research Centre for Geosciences (GFZ) for applications in Dresden and Potsdam. A priori information on building locations was used to support the separation between spectrally similar materials used both on building roofs and non-built surfaces. In addition, surface albedo and leaf area index are derived from the HyMap data. The sub-pixel material map supported by object height data is then used to derive spatial indicators, such as imperviousness or building density. To provide a more detailed micro climate characterisation at building block level, the surface materials, albedo, leaf area index (LAI) and object height are used as input for simulations with the micro climate model ENVI-met. Concluding, this thesis demonstrated the potential of hyperspectral remote sensing to support urban micro climate characterisation. A detailed mapping of surface materials at sub-pixel level could be performed. This provides valuable, detailed information on a large range of spatial characteristics relevant to the assessment of the urban micro climate. The developed conceptual framework has been proven to be applicable to the case study, providing a means to characterise the urban micro climate. The remote sensing products and subsequent micro climatic information are presented at a suitable spatial scale and in understandable maps and graphics. The use of well-known spatial indicators and the framework of urban structural types can simplify the communication with urban planners on the findings on the micro climate. Further research is needed primarily on the sensitivity of the micro climate model towards the remote sensing based input parameters and on the general relation between climate parameters and spatial indicators by comparison with other cities.
While developing modern applications, it is necessary to ensure an efficient and performant communication between different applications. In current environments, a middleware software is used, which supports the publish/subscribe communication pattern. Using this communication pattern, a publisher sends information encapsulated in messages to the middleware. A subscriber registers its interests at the middleware. The monograph describes three different steps to determine the performance of such a system. In a first step, the message throughput performance of a publish/subscribe in different scenarios is measured using a Java Message Service (JMS) based implementation. In the second step the maximum achievable message throughput is described by adapted models depending on the filter complexity and the replication grade. Using the model, the performance characteristics of a specific system in a given scenario can be determined. These numbers are used for the queuing model described in the third part of the thesis, which supports the dimensioning of a system in realistic scenarios. Additionally, we introduce a method to approximate an M/G/1 system numerically in an efficient way, which can be used for real time analysis to predict the expected performance in a certain scenario. Finally, the analytical model is used to investigate different possibilities to ensure the scalability of the maximum achievable message throughput of the overall system.
Ca2+ dependent cell adhesion molecules (cadherins) are central for a variety of cell and tissue functions such as morphogenesis, epithelial and endothelial barrier formation, synaptic function and cellular signaling. Of paramount importance for cadherin function is their specific extracellular adhesive trans-interaction. Cadherins are embedded in a cellular environment of intracellular and extracellular regulators that modify cadherin binding in response to various physiological and pathological stimuli. Most experimental approaches used for studying cadherin interaction however lack a physiological proof of principle mostly by not investigating cadherins in their physiological environment. In the present cumulative dissertation, experimental approaches were applied to characterize and modulate vascular endothelial (VE)-cadherin and desmocadherin functions in the (patho-)physiological contexts of endothelial permeability regulation and disturbance of epidermal barrier function, which is typical to the blistering skin disease pemphigus, respectively. Whereas VE-cadherin is a key regulator of the endothelial barrier that separates the blood compartment from the interstitial space of tissues, desmosomal cadherins are crucial for maintenance of epidermal integrity and separation of the external environment from the body’s internal milieu. Cadherin functions were both investigated in cell-free and cell-based conditions: by using biophysical single molecule techniques like atomic force microscopy (AFM), cadherin function could be investigated in conditions, where contributions of intracellular signaling were excluded. These experiments were, however, compared and combined with cell-based experiments in which cadherins of epidermal or endothelial cell cultures were probed by laser force microscopy (laser tweezers), fluorescence recovery after photobleaching (FRAP) and other techniques. The autoimmune blistering skin diseases pemphigus foliaceus (PF) and pemphigus vulgaris (PV) are caused by autoantibodies directed against the extracellular domains of the desmosomal cadherins desmoglein (Dsg) 1 and 3, which are important for epidermal adhesion. The mechanism of autoantibody-induced cell dissociation (acantholysis) in pemphigus, however, is still not fully understood. For the first time, it is shown by AFM force spectroscopy that pemphigus autoantibodies directly inhibit Dsg3 adhesion by steric hindrance but do not inhibit adhesion of Dsg1. However, the full pathogenicity of the autoantibodies depended on cellular signaling processes, since autoantibodies targeting Dsg1 also resulted in loss of cadherin-mediated adhesion in cell-based experiments. However, two other signaling pathways that have been reported to be involved in pemphigus pathogenesis, i.e. epidermal growth factor receptor (EGFR) and c-Src activation, were not found to be important in this context. Furthermore, peptide-based modulators of cadherin functions were generated for Dsg1/3 and VE-cadherin. By comparing Dsg1, Dsg3 and VE-cadherin sequences to published X-ray structures of cadherin trans-interactions, specific amino acid sequences of the binding pockets of these cadherins were identified. Peptide versions of these motifs were synthesized and the antagonistic functions of these “single peptides” were validated by AFM force spectroscopy as well as by cell-based assays. By linking two single peptides in tandem, stabilization of cadherin bonds because of by cross-bridge formation between trans-interacting cadherins was demonstrated. Protective effects of tandem peptides were shown by partly preventing pemphigus autoantibody-induced acantholysis, or in the case of VE-cadherin, by stabilizing endothelial barrier properties against barrier disrupting agents like the Ca2+ ionophore A23187 and an inhibitory VE-cadherin antibody. Most importantly, VE-cadherin tandem peptides abolished microvascular hyperpermeability induced by the physiologic inflammatory agent tumor necrosis factor-α in the rat mesentery in vivo. Both classes of tandem peptides therefore can be considered as a starting point for the generation of potential therapeutic agents that might prevent cell dissociation in pemphigus and breakdown of the endothelial barrier under inflammatory conditions.
The results of this thesis contribute to the understanding of the electronic properties of organic thin-films and interfaces. It is demonstrated that photoemission spectroscopy is very useful for studying surfaces and interfaces. Additionally it is shown, that many-body effects can be relevant for organic thin films, in particular at interfaces with strong interaction. These effects can have general implications for the material properties. In the first part of this thesis a systematic series of polyacene molecules is investigated with NEXAFS spectroscopy. The comparison of the data with core level and IPES data indicates that core excitations and core excitons need to be understood as many-body excitations. This finding implies for example that a high exciton binding energy is not necessarily associated with strong localization of the excited electron at the hole. As these effects apply also for valence excitons they can be relevant for the separation of charges and for the electron-hole recombination at interfaces. In the next chapter some fundamental effects in organic multilayer films and at organic-metal interfaces are studied with core level and NEXAFS spectroscopy. In this context a series of selected molecules is investigated, namely BTCDA, BTCDI, PTCDA and PTCDI. It is shown that in case of strong interface interaction a density of adsorbate-substrate states is formed which can lead to significant charge transfer satellites in the PES and NEXAFS spectra, similar to what is known for transition metal compounds. Moreover, it is demonstrated that the data can be modeled qualitatively by a basic approach which fuses the single impurity Anderson model with the description of charge transfer satellites by Sawatzky et al. This approach, which is equivalent to that of Gunnarsson and Schönhammer, allows even a relatively simple semi-quantitative analysis of the experimental data. The comparison of different adsorbate layers indicates that these many-body effects are particularly strong in case of partial occupation of the LUMO derived DOS. In the third part an organic multilayer film (SnPc), an organic-metal interface with strong coupling (SnPc/Ag) and an organic-organic interface (SnPc/PTCDA/Ag) are studied exemplarily with resonant Auger spectroscopy. The comparison of the data gives evidence for the contribution of many-body effects to the autoionization spectra. Furthermore, it is found that the electron-vibration coupling and the substrate-adsorbate charge transfer occurs on the time scale of the core hole life time. Moreover, the interaction at the organic-organic interface is weak, comparable to the intermolecular interaction in the multilayer films, despite a considerable rigid level shift for the SnPc layer. Furthermore, weak but significant electron-electron correlation is found for the molecular frontier orbitals, which are important for the substrate-adsorbate charge transfer. Therefore, these strongly coupled adsorbate films are briefly discussed within the context of the Hubbard model in the last part of this thesis. From the data derived in this work it can be estimated that such monolayer films are in the regime of medium correlations. Consequently one can expect for these adsorbate films properties which are related to the extraordinary behavior of strongly correlated materials, for which Mott metal-insulator transitions, sophisticated magnetic properties and superconductivity can be observed. Additionally some results from the investigation of alkyl/Si self-assembled monolayers are briefly discussed in the appendix. It is demonstrated exemplarily for the alkyl chains that the electronic band structure of short, finitely repeating units can be well modeled by a comparatively simple quantum well approach. In principle this approach can also be applied to higher dimensional systems, which makes it very useful for the description of E(k) relations in the regime of repeating units of intermediate length. Furthermore, the photoelectron and NEXAFS spectra indicate strong interaction at the alkyl/Si interface. It was found that the interface states can be modified by moderate x-ray irradiation, which changes the properties for charge transport through the SAM.
One key scientific program of the MAGIC telescope project is the discovery and detection of blazars. They constitute the most prominent extragalactic source class in the very high energy (VHE) Gamma-ray regime with 29 out of 34 known objects (as of April 2010). Therefore a major part of the available observation time was spent in the last years on high-frequency peaked blazars. The selection criteria were chosen to increase the detection probability. As the X-ray flux is believed to be correlated to the VHE Gamma-ray flux, only X-ray selected sources with a flux F(X) > 2 μJy at 1 keV were considered. To avoid strong attenuation of the Gamma-rays in the extragalactic infrared background, the redshift was restricted to values between z < 0.15 and z < 0.4, depending on the declination of the objects. The latter determines the zenith distance during culmination which should not exceed 30° (for z < 0.4) and 45° (for z < 0.15), respectively. Between August 2005 and April 2009, a sample of 24 X-ray selected high-frequency peaked blazars has been observed with the MAGIC telescope. Three of them were detected including 1ES 1218+304 being the first high-frequency peaked BL Lacertae object (HBL) to be discovered with MAGIC in VHE Gamma-rays. One previously detected object was not confirmed as VHE emitter in this campaign by MAGIC. A set of 20 blazars previously not detected will be treated more closely in this work. In this campaign, during almost four years ~ 450 hrs or ~ 22% of the available observation time for extragalactic objects were dedicated to investigate the baseline emission of blazars and their broadband spectral properties in this emission state. For the sample of 20 objects in a redshift range of 0.018 < z < 0.361 integral flux upper limits in the VHE range on the 99.7% confidence level (corresponding to 3 standard deviations) were calculated resulting in values between 2.9% and 14.7% of the integral flux of the Crab Nebula. As the distribution of significances of the individual objects shows a clear shift to positive values, a stacking method was applied to the sample. For the whole set of 20 objects, an excess of Gamma-rays was found with a significance of 4.5 standard deviations in 349.5 hours of effective exposure time. For the first time a signal stacking in the VHE regime turned out to be successful. The measured integral flux from the cumulative signal corresponds to 1.4% of the Crab Nebula flux above 150 GeV with a spectral index α = −3.15±0.57. None of the objects showed any significant variability during the observation time and therefore the detected signal can be interpreted as the baseline emission of these objects. For the individual objects lower limits on the broad-band spectral indices αX−Gamma between the X-ray range at 1 keV and the VHE Gamma-ray regime at 200 GeV were calculated. The majority of objects show a spectral behaviour as expected from the source class of HBLs: The energy output in the VHE regime is in general lower than in X-rays. For the stacked blazar sample the broad-band spectral index was calculated to αX−Gamma = 1.09, confirming the result found for the individual objects. Another evidence for the revelation of the baseline emission is the broad-band spectral energy distribution (SED) comprising archival as well as contemporaneous multi-wavelength data from the radio to the VHE band. The SEDs of known VHE Gamma-ray sources in low flux states matches well the SED of the stacked blazar sample.
In the frame of this thesis vibronic and electronic states of organic molecules have been examined. A central question is the interaction within and between the molecules in thin films and at metal-organic interfaces. The main experimental tools were high resolution electron energy loss spectroscopy (HREELS) and high resolution near edge X-ray absortion fine structure (NEXFAS). The electronic and vibronic structure of thin NTCDA films was examined with low energy electrons as probe, i.e. HREELS. The spectra of the electronic excited molecular orbitals of submonolayer NTCDA on a Ag(111) shows a partially filled orbital. The interaction between this orbital and the total symetric molecular vibrations leads to the typical Fano peak profiles which are seen in the vibrational spectra. The sub-monolayer superstructure can be driven to a phase transition into an disordered phase upon cooling, which is also seen in the electronic and vibronic excitation spectra. Multilayers show flat lying or upright standing molecules as a function of the preparation conditions. The upright standing molecules show an island growth mode, where the islands are well ordered and exhibit a structure in diffraction experiments which can be attributed to the molecular crystal structure. In order to examine the order in more detail various thin films were examined using SPALEED as function of film thickness and preparation parameters. In case of a low temperature substrate no long range order leading to a diffraction pattern was found. In contrast growth on room temperature substrates leads to island growth of films in a structure of the molecular crystal, where two preferred orientations of the islands relative to the substrate were found. In case of thick films the reference to the substrate gets lost and the molecular crystals grow with a defined crystal direction with respect to the surface but with an arbitrary azimuthal orientation leading to circles in the diffraction pattern. NTCDA monolayers on a Ag(111) surface using HREELS as a tool were examined. The electronic excitation spectra reveal a partially filled molecular orbital which is strongly shifted compared to the multilayer. The existence of this state is responsible for the activation of normally forbidden Ag modes in the vibrational spectra. Due to the electron phonon coupling these modes exhibit a Fano like peak shape. Cooling a monolayer leads to a phase transition with strong changes in the spectroscopic features both in electronic and vibronic excitations. In case of the molecule ANQ the intramolecular interaction was examined. In the oxygen NEXAFS spectra a vibronic fine structure is found, which leads to the conclusion that asymmetric potentials are involved. It is an interesting question if the fundamental vibration is has C-H or C=O character. In order to address this question spectra of condensed and gas phase ANQ were compared to an ANQ derivate (ANQ- Br$_2$Cl$_2$), with the conclusion that the coupling is most likely to a C=O mode. High resolution C1s spectra of hydrogenated and fully deuterated naphthalene both in gas and condensed phase have been presented. Depending on the final state orbital distinct differences have been found between gas and condensed phase. A energetic shift of resonances (Res. B, C, D) is interpreted as effect of $\pi$-$\pi$ interaction in the condensed phase. This is especially notable for resonance B which is undoubtly assigned to an excitation into a $\pi^*$ orbital. The results lead to an interpretation, that for organic molecular crystals more than pure van-derWaals interaction has to be taken into account. In summary it is found that the intramolecular interaction in NEXAFS spectra is preferentially coupled to one or a few vibronic progressions. Due to the delocalized electronic system maybe even states which are not spatially near the core excited atom can be involved. It could be shown that a condensation of the molecules in thin films leads to changes within the spectra. The influence the intermolecular interaction can be clearly seen in this finding, where additional hints are found that more than mere van-der-Waals binding has to be taken into account.
Scents as Floral Defence : Impact on Species and Communities, Mechanisms and Ecological Consequences
(2010)
Floral scents are compositions of diverse volatile substances. Despite the chemical complexity, the interpretation of their ecological relevance was mostly confined to the attractive function facilitating interactions with pollinators. However, the negative impact on plants’ reproduction by non-pollinating flower visitors is pronounced and demands floral adaptations that exclude antagonists. The aim of this dissertation was to explore the defensive properties of floral odours and to imbed them into ecological contexts. The thesis covered four scopes: the scents’ impact on individual species and on flower-visitor communities, the mechanisms that explain the dual function of floral volatiles (attraction and defence), and the ecological consequences of missing defences for plants and pollinators. The most important floral antagonists that are known to reduce the reproductive fitness of plants were identified and their responses towards floral scents were examined. We found that representatives of non‐pollinating florivores (bush crickets), predators that lure for pollinators (spiders), and microorganisms that potentially colonize petals were repelled, deterred or inhibited in their growth by floral secondary metabolites. An earlier study revealed the same effect on nectar thieving ants. These experimental studies clearly demonstrate that scents universally serve as floral defences that have the potential to reduce or even prevent the visitation and exploitation of flowers by these antagonists. Within diverse communities, we tested whether species‐specific responses to odours reflect the structure of naturally occurring flower-visitor interactions in order to examine the ecological importance of defensive floral scents. On three Hawaiian Islands, ant-flower interactions involving co-occurring native and introduced plants were observed. Ants were historically absent from the geographically isolated Hawaiian archipelago. Thus, we hypothesized that native Hawaiian plants lack floral features that exclude ants and therefore would be heavily exploited by introduced, invasive ants. We quantified the residual interaction strength of each pair of ant/plant species as the deviation of the observed interaction frequency from a null-model prediction based on available nectar sugar in a local plant community and local ant activity at sugar baits. As predicted, flowers of plants that are endemic or indigenous to Hawaii were stronger exploited by ants than flowers of co- occurring introduced plants, which share an evolutionary history with ants. We showed experimentally that the absence of ants on flowers of most introduced and few native plants species was due to morphological barriers and/or repellent floral scents, examined in a mobile olfactometer. Analysis of floral volatiles, however, revealed no consistent ant- repellent “syndrome”, probably due to the high chemical variability within the floral scent bouquets. On a fallow land in Germany, we linked the responses of receivers (flower visitors) towards signals (flower scent) with the structure of a highly diverse natural flower-insect network. For each interaction, we defined link temperature – a newly developed metric – as the deviation of the observed interaction strength from neutrality, assuming that animals randomly interact with flowers. Link temperature was positively correlated to the specific visitors' responses to floral scents. Thus, communication between plants and consumers via phytochemical signals reflects a significant part of the microstructure in a complex network. Negative as well as positive responses towards floral scents contributed to these results, where individual experience was important, apart from innate behaviour. The demonstration of the contrasting functions of floral scents that control the visitor spectrum of flowers represents the first evidence that floral scents act as filters allowing access to some flower visitors but simultaneously exclude others. These findings raise the central question of this thesis: what evolutionary mechanism explains the dual function of floral scents? The view of flower visitors as mutualistic and antagonistic agents considers primarily the interest of plants. A classification emphasizing the consumer’s point of view, however, may be more useful when considering adaptations of animals to flower visits. Therefore, we introduced a novel classification that acknowledges the consumers’ interest in the interaction: some animals evolved an obligate dependence on floral resources, others use nectar and pollen as supplement to their diet and are thus regarded as facultative flower visitors. In a meta-analysis covering 18 studies on the responses of animals to floral scents, we assigned the animals to the categories of obligate or facultative flower visitors. Their responses to floral scents were compared. On average, obligate flower visitors, often corresponding to pollinators, were attracted to floral scent compounds. In contrast, facultative and mainly antagonistic visitors were strongly repelled by flower odours. The findings confirm that floral scents have a dual function both as attractive and defensive cues. Whether an animal depends on floral resources determines its response to these signals, suggesting that obligate flower visitors evolved a tolerance against primarily defensive compounds. These findings were confirmed in an experimental study. We conclude that floral scents protect flowers against visitors that would otherwise reduce the reproductive success of plants. In Hawaii, where flowers do not have defensive means against ants, we studied the impact of ants on the pollination effectiveness of endemic and introduced bees and on the fruit set of an endemic tree Metrosideros polymorpha (Myrtaceae). Ants were dominant nectar-consumers that mostly depleted the nectar of visited inflorescences. Accordingly, the visitation frequency, duration, and consequently the pollinator effectiveness of nectar-foraging bees strongly decreased on ant-visited flowers, whereas pollen-collecting bees remained largely unaffected by ants. Overall, endemic bees (Hylaeus spp.) were much poorer pollinators than introduced honeybees (Apis mellifera). The average net effect of ants on pollination of M. polymorpha was neutral, corresponding to a similar fruit set of ant-visited and ant-free inflorescences. A second Hawaiian plant species, Vaccinium reticulatum (Ericaceae), was visited by the caterpillars of an introduced plume moth (Stenoptilodes littoralis) that destroyed buds and flowers of this species. The ants’ presence on flowers strongly reduced flower parasitism by the caterpillars and consequently decreased the loss of flowers and buds. This is, to our knowledge, the first documented mutualism between invasive ants and an endemic plant species in Hawaii. Thus, ants that have been shown to be detrimental flower visitors elsewhere, had neutral (M. polymorpha) or even positive (V. reticulatum) effects on endemic Hawaiian plants. However, their overall negative effect on the Hawaiian flora and fauna should not be disregarded.
In the context of the ongoing discussion about a carrier-induced ferromagnetic phase transition in diluted-magnetic II-VI semiconductors (DMS), theoretical studies on coherent dynamics of localized spins coupled with a two-dimensional hole gas (2DHG) in DMS quantum wells (QWs) were done by K.V. KAVOKIN. His key for studying the exchange interaction of the localized spin ensemble (e.g. Mn2+) with the 2DHG is the Larmor frequency of the localized Mn-ion spins and thus their Mn-g-factor. It was shown that the 2DHG affects a time evolution of the (Mn-) spin system in an in-plane magnetic field resulting in the reduction of its Larmor frequency (Mn-g-factor) under the influence of an oscillating effective field of holes. This is called magnetic soft mode (behaviour). The experimental access for demonstrating this Mn-g-factor reduction with increasing hole concentration is the method of Multi-Spin-Flip (SF) Raman scattering combined with the variation of the carrier concentration by photo-excitation with an additional light source (two-colour experiment). The main motivation for this thesis was the experimental confirmation of the theoretically predicted magnetic soft mode and the analysis of its dependence on the hole-concentration and external B-field, as well as its disappearance with increasing sample temperature. For that purpose, CdMnTe/CdMgTe QWs (Mn: 0.6%, 1.0%) positioned close to the sample surface (13−19nm) were investigated in an in-plane applied external magnetic field (up to 4.5T in Voigt-geometry) via a two-colour experiment i.e. using two light sources. This allows the spin excitation of Mn-ions by simultaneously tuning the hole-concentration towards the ferromagnetic phase transition by photo-generated carriers. Thus, one tuneable laser is responsible for resonant below-barrier excitation as a probe for Multi-SF Raman scattering. The other laser excites photo-generated carriers from above barrier (2.41eV) for tuning the hole concentration in the QW. Positioning the QW close to the sample surface causes a surface-induced p-doping of the QW (intrinsic hole concentration in the QW) and enables the active tuning of the hole concentration by photo-generated carriers due to different tunnelling behaviour of electrons and holes from the QW to the surface. The Mn-g-factor was decreased by quasi-continuously increasing the above-barrier illumination (and thus the hole concentration), while the below-barrier excitation (Multi-PR probe) was kept at a constant low power. This results in a Mn-g-factor reduction starting from its atomic value g=2.01 to lowest evaluated Mn-g-factor in this thesis g=1.77. This is a magnetic softening of 12%. Apart from the general magnetic soft mode behaviour at low temperatures, one of the main experimental results in this thesis is the confirmation of the theoretical prediction that the magnetic soft mode behaviour in the external B-field does not only depend on the carrier concentration but also on the B-field strength itself. An additional aspect is the temperature dependence of the magnetic soft mode. The Mn-g-factor decrease is suppressed with increasing temperature almost reaching the atomic Mn-g-factor at 4.2K (g=1.99). This behaviour is due to the T-induced weakening of the transverse 2DHG spin susceptibility. The results of the investigations concerning the cap layer thickness impact on the QW carrier characteristics were investigated in the cap thickness range of 13nm to 19nm. The cap thickness configures on the one hand the intrinsic hole concentration of the QW ("2DHG offset") due to the surface-induced p-doping and sets the "starting point" for the Mn-g-factor reduction. On the other hand the cap thickness determines the probability of electron tunnelling to the surface and thus the efficiency of the hole tuning by light. The latter is the criterion for the range of Mn-g-factor reduction by light. This two dependences were pointed out by the photo-generated hole influence on the QW PL-spectra which results in tuning the exciton-trion ratio. In summary both mechanisms are of relevance for the hole tuning and thus for the magnetic soft-mode behaviour. The mechanism of tunnelling time prevails at small cap layer thicknesses while the surface-induced p-doping plays the major role for larger cap thicknesses (> 25nm). In conclusion, the presented method in this thesis is a sensitive tool to study the dynamics of the spin excitations and the paramagnetic susceptibility in the vicinity of the hole-induced ferromagnetic phase transition.
Free fatty acids (FFA) modulate the effectiveness of glucose to suppress endogenous glucose production (EGP), and increased FFA levels contribute importantly to the loss of glucose effectiveness in type 2 diabetes mellitus (T2DM). Elevating FFA levels in nondiabetic (ND) subjects for at least 6h both increases gluconeogenesis (GNG) and impairs glucose effectiveness. Therefore, we wished to define the extent to which an increase in GNG is responsible for the loss of glucose effectiveness and whether EGP can be inhibited in the presence of elevated plasma FFA by inhibiting GNG with ethanol. To determine the effect of inhibiting GNG on glucose effectiveness, EGP ([3-3H]-glucose) was measured during three separate 7h normoglycemic/hyperglycemic pancreatic clamp studies (somatostatin; basal glucagon/GH/insulin replacement) in n=7 ND subjects (1F/6M; age=45±5 yr; BMI=27.6±3.0 kg/m2). Following an initial 210 min interval of euglycemia (5 mmol/l), blood glucose levels were raised to hyperglycemic levels (10 mmol/l) from t=210-420 min. The first pancreatic clamp study was a baseline study with saline infusions (Lip-/Et-). Lipid emulsion (Liposyn 20%) was infused throughout the second and third study types (Lip+ and Lip+/Et+) to increase FFA to T2DM levels (~ 500 mmol/l). In addition to Liposyn, ethanol (Et) was infused during hyperglycemia in the third study type (Lip+/Et+), using a pharmacokinetic algorithm to attain GNG-inhibiting ethanol levels of 80 mg/dl within 20 min. Under baseline conditions, hyperglycemia suppressed EGP by 61%. After raising plasma FFA to T2DM levels, suppression of EGP by hyperglycemia was impaired in Lip+ (34% decrease). During the Lip+/Et+ co-infusion studies the infusion of ethanol enhanced suppression of EGP by hyperglycemia (65.8% decrease, P=0.004 vs. Lip+) and thus restored glucose effectiveness (P=0.6 vs. Lip-/Et-). Thus, our results confirm the striking effects of elevated plasma FFA to impair glucose effectiveness and suggest that increased GNG contributes importantly to this loss of regulation. Inhibiting GNG could be an effective means of lowering EGP and improving glucose effectiveness in T2DM.
Biodiversity may be investigated and explored by the means of genetic sequence information and molecular phylogenetics. Yet, with ribosomal genes, information for phylogenetic studies may not only be retained from the primary sequence, but also from the secondary structure. Software that is able to cope with two dimensional data and designed to answer taxonomic questions has been recently developed and published as a new scientific pipeline. This thesis is concerned with expanding this pipeline by a tool that facialiates the annotation of a ribosomal region, namely the ITS2. We were also able to show that this states a crucial step for secondary structure phylogenetics and for data allocation of the ITS2-database. This resulting freely available tool determines high quality annotations. In a further study, the complete phylogenetic pipeline has been evaluated on a theoretical basis in a comprehensive simulation study. We were able to show that both, the accuracy and the robustness of phylogenetic trees are largely improved by the approach. The second major part of this thesis concentrates on case studies that applied this pipeline to resolve questions in taxonomy and ecology. We were able to determine several independent phylogenies within the green algae that further corroborate the idea that secondary structures improve the obtainable phylogenetic signal, but now from a biological perspective. This approach was applicable in studies on the species and genus level, but due to the conservation of the secondary structure also for investigations on the deeper level of taxonomy. An additional case study with blue butterflies indicates that this approach is not restricted to plants, but may also be used for metazoan phylogenies. The importance of high quality phylogenetic trees is indicated by two ecological studies that have been conducted. By integrating secondary structure phylogenetics, we were able to answer questions about the evolution of ant-plant interactions and of communities of bacteria residing on different plant tissues. Finally, we speculate how phylogenetic methods with RNA may be further enhanced by integration of the third dimension. This has been a speculative idea that was supplemented with a small phylogenetic example, however it shows that the great potential of structural phylogenetics has not been fully exploited yet. Altogether, this thesis comprises aspects of several different biological disciplines, which are evolutionary biology and biodiversity research, community and invasion ecology as well as molecular and structural biology. Further, it is complemented by statistical approaches and development of informatical software. All these different research areas are combined by the means of bioinformatics as the central connective link into one comprehensive thesis.
The Popeye domain containing (Popdc) gene family of membrane proteins is predominantly expressed in striated and smooth muscle tissues and has been shown to act as novel cAMP-binding proteins. In mice, loss of Popdc1 and Popdc2, respectively, affects sinus node function in the postnatal heart in an age and stress-dependent manner. In this thesis, I examined gene expression pattern and function of the Popdc gene family during zebrafish development with an emphasis on popdc2. Expression of the zebrafish popdc2 was exclusively present in cardiac and skeletal muscle during cardiac development, whereas popdc3 was expressed in striated muscle tissue and in distinct regions of the brain. In order to study the function of these genes, an antisense morpholino-based knockdown approach was used. Knockdown of popdc2 resulted in aberrant development of facial and tail musculature. In the heart, popdc2 morphants displayed irregular ventricular contractions with 2:1 and 3:1 ventricular pauses. Recordings of calcium transients using a transgenic indicator line Tg(cmlc2:gCaMP)s878 and selective plane illumination microscopy (SPIM) revealed the presence of an atrioventricular (AV) block in popdc2 morphants as well as a complete heart block. Interestingly, preliminary data revealed that popdc3 morphants developed a similar phenotype. In order to find a morphological correlate for the observed AV conduction defect, I studied the structure of the AV canal in popdc2 morphants using confocal analysis of hearts of the transgenic line Tg(cmlc2:eGFP-ras)s883, which outlines individual cardiac myocytes with the help of membrane-localized GFP. However, no evidence for morphological alterations was obtained. To ensure that the observed arrhythmia phenotype in the popdc2 morphant was based on a myocardial defect and not caused by defective valve development, live imaging was performed revealing properly formed valves. Thus, in agreement with the data obtained in knockout mice, popdc2 and popdc3 genes in zebrafish are involved in the regulation of cardiac electrical activity. However, both genes are not required for cardiac pacemaking, but they play essential roles in AV conduction. In order to elucidate the biological importance of cAMP-binding, wild type Popdc1 as well as mutants with a significant reduction in binding affinity for cAMP in vitro were overexpressed in zebrafish embryos. Expression of wild type Popdc1 led to a cardiac insufficiency phenotype characterized by pericardial edema and venous blood retention. Strikingly, the ability of the Popdc1 mutants to induce a cardiac phenotype correlated with the binding affinity for cAMP. These data suggest that cAMP-binding represents an important biological property of the Popdc protein family.
The focus of this work lies on the communication issues of Medium Access Control (MAC) and routing protocols in the context of WSNs. The communication challenges in these networks mainly result from high node density, low bandwidth, low energy constraints and the hardware limitations in terms of memory, computational power and sensing capabilities of low-power transceivers. For this reason, the structure of WSNs is always kept as simple as possible to minimize the impact of communication issues. Thus, the majority of WSNs apply a simple one hop star topology since multi-hop communication has high demands on the routing protocol since it increases the bandwidth requirements of the network. Moreover, medium access becomes a challenging problem due to the fact that low-power transceivers are very limited in their sensing capabilities. The first contribution is represented by the Backoff Preamble-based MAC Protocol with Sequential Contention Resolution (BPS-MAC) which is designed to overcome the limitations of low-power transceivers. Two communication issues, namely the Clear Channel Assessment (CCA) delay and the turnaround time, are directly addressed by the protocol. The CCA delay represents the period of time which is required by the transceiver to detect a busy radio channel while the turnaround time specifies the period of time which is required to switch between receive and transmit mode. Standard Carrier Sense Multiple Access (CSMA) protocols do not achieve high performance in terms of packet loss if the traffic is highly correlated due to the fact that the transceiver is not able to sense the medium during the switching phase. Therefore, a node may start to transmit data while another node is already transmitting since it has sensed an idle medium right before it started to switch its transceiver from receive to transmit mode. The BPS-MAC protocol uses a new sequential preamble-based medium access strategy which can be adapted to the hardware capabilities of the transceivers. The protocol achieves a very low packet loss rate even in wireless networks with high node density and event-driven traffic without the need of synchronization. This makes the protocol attractive to applications such as structural health monitoring, where event suppression is not an option. Moreover, acknowledgments or complex retransmission strategies become almost unnecessary since the sequential preamble-based contention resolution mechanism minimizes the collision probability. However, packets can still be lost as a consequence of interference or other issues which affect signal propagation. The second contribution consists of a new routing protocol which is able to quickly detect topology changes without generating a large amount of overhead. The key characteristics of the Statistic-Based Routing (SBR) protocol are high end-to-end reliability (in fixed and mobile networks), load balancing capabilities, a smooth continuous routing metric, quick adaptation to changing network conditions, low processing and memory requirements, low overhead, support of unidirectional links and simplicity. The protocol can establish routes in a hybrid or a proactive mode and uses an adaptive continuous routing metric which makes it very flexible in terms of scalability while maintaining stable routes. The hybrid mode is optimized for low-power WSNs since routes are only established on demand. The difference of the hybrid mode to reactive routing strategies is that routing messages are periodically transmitted to maintain already established routes. However, the protocol stops the transmission of routing messages if no data packets are transmitted for a certain time period in order to minimize the routing overhead and the energy consumption. The proactive mode is designed for high data rate networks which have less energy constraints. In this mode, the protocol periodically transmits routing messages to establish routes in a proactive way even in the absence of data traffic. Thus, nodes in the network can immediately transmit data since the route to the destination is already established in advance. In addition, a new delay-based routing message forwarding strategy is introduced. The forwarding strategy is part of SBR but can also be applied to many routing protocols in order to modify the established topology. The strategy can be used, e.g. in mobile networks, to decrease the packet loss by deferring routing messages with respect to the neighbor change rate. Thus, nodes with a stable neighborhood forward messages faster than nodes within a fast changing neighborhood. As a result, routes are established through nodes with correlated movement which results in fewer topology changes due to higher link durations.