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The immune system has the function to defend organisms against a variety of pathogens
and malignancies. To perform this task, different parts of the immune system work in concert and
influence each other to balance and optimize its functional output upon activation. One aspect that
determines this output and ultimately the outcome of the infection is the tissue context in which the
activation takes place. As such, it has been shown that dendritic cells can relay information from
the infection sites to draining lymph nodes. This way, the ensuing adaptive immune response that
is initiated by dendritic cells, is optimized to the tissue context in which the infection needs to be
cleared.
Here, we set out to investigate whether unconventional T cells (UTC) could have a similar
function in directing a site-specific immune response. Using flow cytometry, scRNA-sequencing
and functional assays we demonstrated that UTC indeed drive a characteristic immune response
in lymph nodes depending on the drained tissues. This function of UTC was directly connected to
their lymphatic migration from tissues to draining lymph nodes reminiscent of dendritic cells.
Besides these tissue-derived UTC that migrated via the lymph, we further identified circulatory UTC
that migrated between lymph nodes via the blood. Functional characterization of UTC following
bacterial infection in wt and single TCR-based lineage deficient mice that lacked subgroups of UTC
further revealed that both tissue-derived and circulatory UTC were organized in functional units
independent of their TCR-based lineage-affiliation (MAIT, NKT, gd T cells). Specific reporter mouse
models revealed that UTC within the same functional unit were also located in the same
microanatomical areas of lymph nodes, further supporting their shared function. Our data show that
the numbers and function of UTC were compensated in single TCR-based lineage deficient mice
that lacked subgroups of UTC.
Taken together, our results characterize the transcriptional landscape and migrational
behavior of UTC in different lymph nodes. UTC contribute to a functional heterogeneity of lymph
nodes, which in turn guides optimized, site-specific immune responses. Additionally, we propose
the classification of UTC within functional units independent of their TCR-based lineage. These
results add significantly to our understanding of UTC biology and have direct clinical implications.
We hope that our data will guide targeted vaccination approaches and cell-based therapies to
optimize immune responses against pathogens and cancer.