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Institute
Mathematical modelling, simulation, and optimisation are core methodologies for future
developments in engineering, natural, and life sciences. This work aims at applying these
mathematical techniques in the field of biological processes with a focus on the wine
fermentation process that is chosen as a representative model.
In the literature, basic models for the wine fermentation process consist of a system of
ordinary differential equations. They model the evolution of the yeast population number
as well as the concentrations of assimilable nitrogen, sugar, and ethanol. In this thesis,
the concentration of molecular oxygen is also included in order to model the change of
the metabolism of the yeast from an aerobic to an anaerobic one. Further, a more sophisticated
toxicity function is used. It provides simulation results that match experimental
measurements better than a linear toxicity model. Moreover, a further equation for the
temperature plays a crucial role in this work as it opens a way to influence the fermentation
process in a desired way by changing the temperature of the system via a cooling
mechanism. From the view of the wine industry, it is necessary to cope with large scale
fermentation vessels, where spatial inhomogeneities of concentrations and temperature
are likely to arise. Therefore, a system of reaction-diffusion equations is formulated in
this work, which acts as an approximation for a model including computationally very
expensive fluid dynamics.
In addition to the modelling issues, an optimal control problem for the proposed
reaction-diffusion fermentation model with temperature boundary control is presented
and analysed. Variational methods are used to prove the existence of unique weak solutions
to this non-linear problem. In this framework, it is possible to exploit the Hilbert
space structure of state and control spaces to prove the existence of optimal controls.
Additionally, first-order necessary optimality conditions are presented. They characterise
controls that minimise an objective functional with the purpose to minimise the final
sugar concentration. A numerical experiment shows that the final concentration of sugar
can be reduced by a suitably chosen temperature control.
The second part of this thesis deals with the identification of an unknown function
that participates in a dynamical model. For models with ordinary differential equations,
where parts of the dynamic cannot be deduced due to the complexity of the underlying
phenomena, a minimisation problem is formulated. By minimising the deviations of simulation
results and measurements the best possible function from a trial function space
is found. The analysis of this function identification problem covers the proof of the
differentiability of the function–to–state operator, the existence of minimisers, and the
sensitivity analysis by means of the data–to–function mapping. Moreover, the presented
function identification method is extended to stochastic differential equations. Here, the
objective functional consists of the difference of measured values and the statistical expected
value of the stochastic process solving the stochastic differential equation. Using a
Fokker-Planck equation that governs the probability density function of the process, the
probabilistic problem of simulating a stochastic process is cast to a deterministic partial
differential equation. Proofs of unique solvability of the forward equation, the existence of
minimisers, and first-order necessary optimality conditions are presented. The application
of the function identification framework to the wine fermentation model aims at finding
the shape of the toxicity function and is carried out for the deterministic as well as the
stochastic case.
In this work, multi-particle quantum optimal control problems are studied in the framework of time-dependent density functional theory (TDDFT).
Quantum control problems are of great importance in both fundamental research and application of atomic and molecular systems. Typical applications are laser induced chemical reactions, nuclear magnetic resonance experiments, and quantum computing.
Theoretically, the problem of how to describe a non-relativistic system of multiple particles is solved by the Schrödinger equation (SE). However, due to the exponential increase in numerical complexity with the number of particles, it is impossible to directly solve the Schrödinger equation for large systems of interest. An efficient and successful approach to overcome this difficulty is the framework of TDDFT and the use of the time-dependent Kohn-Sham (TDKS) equations therein.
This is done by replacing the multi-particle SE with a set of nonlinear single-particle Schrödinger equations that are coupled through an additional potential.
Despite the fact that TDDFT is widely used for physical and quantum chemical calculation and software packages for its use are readily available, its mathematical foundation is still under active development and even fundamental issues remain unproven today.
The main purpose of this thesis is to provide a consistent and rigorous setting for the TDKS equations and of the related optimal control problems.
In the first part of the thesis, the framework of density functional theory (DFT) and TDDFT are introduced. This includes a detailed presentation of the different functional sets forming DFT. Furthermore, the known equivalence of the TDKS system to the original SE problem is further discussed.
To implement the TDDFT framework for multi-particle computations, the TDKS equations provide one of the most successful approaches nowadays. However, only few mathematical results concerning these equations are available and these results do not cover all issues that arise in the formulation of optimal control problems governed by the TDKS model.
It is the purpose of the second part of this thesis to address these issues such as higher regularity of TDKS solutions and the case of weaker requirements on external (control) potentials that are instrumental for the formulation of well-posed TDKS control problems. For this purpose, in this work, existence and uniqueness of TDKS solutions are investigated in the Galerkin framework and using energy estimates for the nonlinear TDKS equations.
In the third part of this thesis, optimal control problems governed by the TDKS model are formulated and investigated. For this purpose, relevant cost functionals that model the purpose of the control are discussed.
Henceforth, TDKS control problems result from the requirement of optimising the given cost functionals subject to the differential constraint given by the TDKS equations. The analysis of these problems is novel and represents one of the main contributions of the present thesis.
In particular, existence of minimizers is proved and their characterization by TDKS optimality systems is discussed in detail.
To this end, Fréchet differentiability of the TDKS model and of the cost functionals is addressed considering \(H^1\) cost of the control.
This part is concluded by deriving the reduced gradient in the \(L^2\) and \(H^1\) inner product.
While the \(L^2\) optimization is widespread in the literature, the choice of the \(H^1\) gradient is motivated in this work by theoretical consideration and by resulting numerical advantages.
The last part of the thesis is devoted to the numerical approximation of the TDKS optimality systems and to their solution by gradient-based optimization techniques.
For the former purpose, Strang time-splitting pseudo-spectral schemes are discussed including a review of some recent theoretical estimates for these schemes and a numerical validation of these estimates.
For the latter purpose, nonlinear (projected) conjugate gradient methods are implemented and are used to validate the theoretical analysis of this thesis with results of numerical experiments with different cost functional settings.