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Induced pluripotent stem cells (iPSCs) have been recognised as a virtually unlimited source of stem cells that can be generated in a patient-specific manner. Due to these cells’ potential to give rise to all differentiated cell types of the human body, they have been widely used to derive differentiated cells for drug screening and disease modelling purposes. iPSCs also garner much interest as they can potentially serve as a source for cell replacement therapy. Towards the realisation of these biomedical applications, this thesis aims to address challenges that are associated with scale-up, safety and biofabrication.
Firstly, the manufacture of a high number of human iPSCs (hiPSCs) will require standardised procedures for scale-up and the development of a flexible bioprocessing method, since standard adherent hiPSC culture exhibits limited scalability and is labour-intensive. While the quantity of cells that are required for cell therapy depends largely on the tissue and defect that these replacing cells are meant to correct, an estimate of 1 × 10^9 has been suggested to be sufficient for several indications, including myocardial infarction and islet replacement for diabetes. Here, the development of an integrated, microcarrier-free workflow to transition standard adherent hiPSC culture (6-well plates) to scalable stirred suspension culture in bioreactors (1 L working volume, 2.4 L maximum working volume) is presented. The two-phase bioprocess lasts 14 days and generates hiPSC aggregates measuring 198 ± 58 μm in diameter on the harvesting day, yielding close to 2 × 10^9 cells. hiPSCs can be maintained in stirred suspension for at least 7 weeks with weekly passaging, while exhibiting pluripotency-associated markers TRA-1-60, TRA-1-81, SSEA-4, OCT4, and SOX2. These cells retain their ability to differentiate into cells of all the three germ layers in vitro, exemplified by cells positive for AFP, SMA, or TUBB3. Additionally, they maintain a stable karyotype and continue to respond to specification cues, demonstrated by directed differentiation into beating cardiomyocyte-like cells. Therefore, the aim of manufacturing high hiPSC quantities was met using a state-of-the-art scalable suspension bioreactor platform.
Secondly, multipotent stem cells such as induced neural stem cells (iNSCs) may represent a safer source of renewable cells compared to pluripotent stem cells. However, pre-conditioning of stem cells prior to transplantation is a delicate issue to ensure not only proper function in the host but also safety. Here, iNSCs which are normally maintained in the presence of factors such as hLIF, CHIR99021, and SB431542 were cultured in basal medium for distinct periods of time. This wash-out procedure results in lower proliferation while maintaining key neural stem cell marker PAX6, suggesting a transient pre-differentiated state. Such pre-treatment may aid transplantation studies to suppress tumourigenesis through transplanted cells, an approach that is being evaluated using a mouse model of experimental focal demyelination and autoimmune encephalomyelitis.
Thirdly, biomedical applications of stem cells can benefit from recent advancements in biofabrication, where cells can be arranged in customisable topographical layouts. Employing a 3DDiscovery bioprinter, a bioink consisting of hiPSCs in gelatin-alginate was extruded into disc-shaped moulds or printed in a cross-hatch infill pattern and cross-linked with calcium ions. In both discs and printed patterns, hiPSCs recovered from these bioprints showed viability of around 70% even after 4 days of culture when loaded into gelatin-alginate solution in aggregate form. They maintained pluripotency-associated markers TRA-1-60 and SSEA-4 and continued to proliferate after re-plating. As further proof-of-principle, printed hiPSC 3D constructs were subjected to targeted neuronal differentiation, developing typical neurite outgrowth and resulting in a widespread network of cells throughout and within the topology of the printed matrix. Staining against TUBB3 confirmed neuronal identity of the differentiated cellular progeny. In conclusion, these data demonstrate that hiPSCs not only survive the 3D-printing process but were able to differentiate along the printed topology in cellular networks.
The aim of the thesis was to develop water soluble poly(2-oxazoline) (POx) copolymers with new side group functionalities, which can be used for the formation of hydrogels in biomedical applications and for the development of peptide-polymer conjugates.
First, random copolymers of the monomer MeOx or EtOx with ButEnOx and EtOx with DecEnOx were synthesized and characterized. The vinyl functionality brought into the copolymer by the monomers ButEnOx and DecEnOx would later serve for post-polymerization functionalization. The synthesized copolymers were further functionalized with thiols via post-polymerization functionalization using a newly developed synthesis protocol or with a protected catechol molecule for hydrogel formation. For the formation of peptide-polymer conjugates, a cyclic thioester, namely thiolactone acrylamide and an azlactone precursor, whose synthesis was newly developed, were attached to the side chain of P(EtOx-co-ButEnOx) copolymers.
The application of the functionalized thiol copolymers as hydrogels using thiol-ene chemistry for cross-linking was demonstrated. The swelling behavior and mechanical properties were characterized. The hydrophilicity of the network as well as the cross-linking density strongly influenced the swelling behavior and the mechanical strength of the hydrogels. All hydrogels showed good cell viability results.
The hydrogel networks based on MeOx and EtOx were loaded with two dyes, fluorescein and methylene blue. It was observed that the uptake of the more hydrophilic dye fluorescein depended more on the ability of the hydrogel to swell. In contrast, the uptake of the more hydrophobic dye methylene blue was less dependent on the swelling degree, but much more on the hydrophilicity of the network.
For the potential application as cartilage glue, (biohybrid) hydrogels were synthesized based on the catechol-functionalized copolymers, with and without additional fibrinogen, using sodium periodate as the oxidizing agent. The system allowed for degradation due to the incorporated ester linkages at the cross-linking points. The swelling behavior as well as the mechanical properties were characterized. As expected, hydrogels with higher degrees of cross-linking showed less swelling and higher elastic modulus. The addition of fibrinogen however increased the elasticity of the network, which can be favorable for the intended application as a cartilage glue. Biological evaluation clearly demonstrated the advantage of degradable ester links in the hydrogel network, where chondrocytes were able to bridge the artificial gap in contrast to hydrogels without any ester motifs.
Lastly, different ways to form peptide-polymer conjugates were presented. Peptides were attached with the thiol of the terminal cysteine group to the vinyl side chain of P(EtOx-co-ButEnOx) copolymers by radical thiol-ene chemistry. Another approach was to use a cyclic thioester, thiolactone, or an azlactone functionality to bind a model peptide via native chemical ligation. The two latter named strategies to bind peptides to POx side chains are especially interesting as one and in the case of thiolactone two free thiols are still present at the binding site after the reaction, which can, for example, be used for further thiol-ene cross-linking to form POx hydrogels.
In summary, side functional poly(oxazoline) copolymers show great potential for numerous biomedical applications. The various side chain functionalities can be introduced by an appropriate monomer or by post-polymerization functionalization, as demonstrated. By their multi-functionality, hydrogel characteristics, such as cross-linking degree and mechanical strength, can be fine-tuned and adjusted depending on the application in the human body. In addition, the presented chemoselective and orthogonal reaction strategies can be used in the future to synthesize polymer conjugates, which can, for example, be used in drug delivery or in tissue regeneration.
Tumorzellen, Stromazellen, Extrazellulärmatrix (EZM) und lösliche Faktoren in der Tumormikroumgebung beeinflussen und verstärken sich gegenseitig in der Ausbildung eines malignen Phänotyps. Sowohl die fibrotische EZM als auch eine kleine Subpopulation von pluripotenten Tumorstammzellen sind bekanntermaßen für die Steigerung der Tumoraggressivität verantwortlich. Inwiefern diese beiden unabhängigen Faktoren im Kontext von Brustkrebs miteinander in Beziehung stehen, ist jedoch bis heute unklar.
Um untersuchen zu können, welchen Beitrag Tumorzellen, Stromazellen, EZM und lösliche Faktoren einzeln und im Zusammenspiel zur Malignität eines Tumors leisten, ist die Entwicklung geeigneter in-vitro-Modelle unabdingbar. Daher war es das Ziel dieser Arbeit, ein 3D-Mikrotumormodell zu generieren, in dem eine Analyse dieser genannten Faktoren stattfinden könnte. An diesem Modell wurden darüber hinaus erste Untersuchungen von im Tumorkontext bekannten EZM-Proteinen durchgeführt. Um die dreidimensionale Anordnung von Tumorzellen und ihrer Gewebeumgebung adäquat wiedergeben zu können, beinhalteten die 3D-Tumorsphäroide sowohl Brustkrebszellen (MDA-MB-231) als auch Stromazellen (hASCs).
Die EZM als wichtiger Bestandteil der (Tumor-) Mikroumgebung sollte übersichtshalber durch Hämatoxylin-Eosin-Färbung und detaillierter durch immunhistochemische Analyse nach zwei verschiedenen Kulturzeitpunkten charakterisiert werden, um EZM-Veränderungen im zeitlichen Verlauf darzustellen. Im Fokus der Analyse standen die beiden wichtigsten profibrotischen EZM-Proteine Fibronektin und Kollagen I, die maßgeblich an der Pathogenese von Brustkrebs beteiligt sind. Zudem wurde das Vorkommen des Myofibroblastenmarkers α-SMA untersucht.
An den Sphäroiden einer Kontrollgruppe, die lediglich hASCs beinhaltete, sollte vergleichend eine Analyse der genannten EZM-Proteine sowie α-SMA durchgeführt werden. Um schließlich den Einfluss der von Tumorzellen sezernierten löslichen Faktoren in der Tumormikroumgebung herauszustellen, wurden Sphäroide aus hASCs in tumorkonditioniertem Medium gezüchtet und darin ebenfalls Matrixproteine und α-SMA untersucht.
Abschließend erfolgte eine Korrelation der EZM-Analyse mit dem Vorhandensein von Tumorstammzellen in den 3D-Tumorsphäroiden. Dafür wurden die Tumorstammzellen mithilfe eines GFP-basierten Reporters für den Stammzellmarker NANOG (NANOG-GFP-Reporterzelllinie) in mikroskopischen Aufnahmen der 3D-Tumorsphäroide nachgewiesen und im Kontext mit der EZM lokalisiert.
Erstellung eines genregulatorischen Netzwerkes zur Simulation der Entstehung von Zahnhartsubstanz
(2020)
In dieser Dissertation beschreibt der Autor die Erstellung eines grundlegenden bioinformatischen Modelles der menschlichen Zahnschmelzreifung. Mithilfe der KEGG Pathway-Datenbank wurde ein genregulatorisches Netzwerk (GRN) erstellt, welches maßgeblich auf den Signaltransduktionswegen Apoptose, Zellzyklus, Hedgehog-Signalweg, MAP-Kinase-Weg, mTOR-Signalweg Notch-Signalweg Signalweg, TGF-β-Signalweg und Wnt-Signalweg basiert. Im Weiteren wurde dieses Netzwerk durch zahlreiche verifizierte Wechselwirkungen erweitert und die zahnspezifischen Gene AMELX, AMELY, AMBN, ENAM und DSPP implementiert. In der anschließenden Simulation des Netzwerks mit dem Simulations-Tool Jimena konnten sechs stabile Zustände identifiziert werden. Diese wurden genauer untersucht und den Erkenntnissen eines GEO-Datensatzes gegenübergestellt. Langfristiges Ziel ist es, durch konsequente Optimierung des bioinformatischen Netzwerks Rückschlüsse auf die Odontogenese des Menschen zu ziehen.
Despite advancements of modern medicine, the number of patients with the the end-stage kidney disease keeps growing, and surgical procedures to establish and maintain a vascular access for hemodialysis are rising accordingly. Surgical access of choice remains autogenous arteriovenous fistula, whereas approach “fistula first at all costs” leads to failure in certain subgroups of patients. Modern synthetic vascular grafts fail to deliver long-term results comparable with AV fistula. With all that in mind, this work has an aim of developing a new alternative vascular graft, which can be used for hemodialysis access using the methods of TE, especially electrospinning technique. It is hypothesized that electrospun scaffold, made of PCL and collagen type I may assemble mechanical properties similar to native blood vessels. Seeding such electrospun scaffolds with human microvascular endothelial cells (hmvECs) and preconditioning with shear stress and continuous flow might achieve sufficient endothelial lining being able to resist acute thrombosis. One further topic considered on-site infections, which represents one of the most spread complications of dialysis therapy due to continuous needle punctures. The main hypothesis was that during electrospinning process, polymers can be blended with antibiotics with the aim of producing scaffolds with antimicrobial properties, which could lead to reducing the risk of on-site infection on one side, while not affecting the cell viability.
Structure-property relationships in poly(2-oxazoline)/poly(2-oxazine) based drug formulations
(2020)
According to estimates, more than 40% of all new chemical entities developed in pharmaceutical industry are practically insoluble in water. Naturally, the demand for excipients which increase the water solubility and thus, the bioavailability of such hydrophobic drugs is enormous. Poly(2-oxazoline)s (POx) are currently intensively discussed as highly versatile class of biomaterials. Although selected POx based micellar drug formulations exhibit extraordinarily high drug loadings > 50 wt.% enabling high anti-tumor efficacies in vivo, the formulation of other hydrophobic compounds has failed. This casts doubt on the general understanding in which a hydrophobic active pharmaceutical ingredient is dissolved rather unspecifically in the hydrophobic core of the micelles following the fundamental concept of “like dissolves like”. Therefore, a closer look at the interactions between all components within a formulation becomes increasingly important. To do so, a large vehicle platform was synthesized, loaded with various hydrophobic drugs of different structure, and the formulations subsequently characterized with conventional and less conventional techniques. The obtained in-depth insights helped to develop a more thorough understanding about the interaction of polymer and incorporated API finally revealing morphologies deviating from a classical core/shell structure. During these studies, the scarcely investigated polymer class of poly(2-oxazine)s (POzi) was found as promising drug-delivery vehicle for hydrophobic drugs. Apart from this fundamental research, the anti-tumor efficacy of the two APIs curcumin and atorvastatin has been studied in more detail. To increase the scope of POx and POzi based formulations designed for intravenous administration, a curcumin loaded hydrogel was developed as injectable drug-depot.
Entwicklung einer biofunktionalen Beschichtung für mit Silber dotierte Titandioxid-Nanopartikel
(2020)
Ziel dieser Arbeit war es, eine erfolgreiche Beschichtung der verschiedenen TiO2 Nanopartikel mit aufsteigendem Silberanteil herzustellen, um eine ausgeprägte Stabilisierung und Biokompatibilität der Partikel zu erreichen. Anschließend wurde ihre Wirkung gegenüber gesunden Zellen und Tumorzellen anhand von Zellversuchen untersucht.
Zunächst mussten die TiO2 Aggregate nach ihrer Redispergierung in Wasser, Toluol oder Tris Base gespalten werden, damit anschließend eine kontrollierte Beschichtung einzelner Nanopartikel durchgeführt werden konnte. Der Einfluss von Ultraschall in Form einer zweiminütigen Ultraschalltipbehandlung lieferte hierbei die niedrigsten Partikelgrößen in der DLS-Messung.
Die Beschichtungen wurden mit APTES, Dopamin und PEG-SH unter Einfluss von unterschiedlichen Ultraschalltipzeiten, Konzentrationen, Temperaturen, pH-Werten, Salzen sowie verschiedenen Magnetrührtechniken und Waschprozessen entwickelt. Durch die Charakterisierungsmethoden via dynamischer Lichtstreuung, Zetapotentialmessung, Infrarotspektroskopie, REM und STEM wurde jede Beschichtung analysiert und auf diese Weise ihre optimale Herstellungsmethode erarbeitet.
Schlussendlich wurde der Einfluss unbeschichteter sowie mit APTES, PDA und PEG-SH beschichteter TiO2 Nanopartikel mit steigendem Silberanteil anhand gesunder Zellen und Tumorzellen in vitro untersucht. Die Zellen wurden für 24 h mit den Partikeln inkubiert und anschließend mittels Durchflusszytometrie charakterisiert. Generell wurde nur eine geringfügige Auswirkung der Partikel auf die Zellen beobachtet. Die in der Literatur beworbene Aussage, dass silberdotierte TiO2 in der Lage sind, entartete Zellen zu töten, während gesunde Zellen ausgespart werden, konnte nicht bestätigt werden. Dennoch besaßen einige Faktoren einen Einfluss auf die Vitalität und Zellzahl. So spielte der steigende Silberanteil bei den Zellen eine Rolle, die einen Effekt auf die TiO2 Nanopartikel zeigten. Mit steigendem Ag-Anteil sanken Zellzahl und Vitalität stärker. Auch eine ansteigende Konzentration der beschichteten Partikel wirkte sich positiv auf das Absinken der Zellzahl aus. Besonders die adhärent wachsende Tumorzelllinie Panc02 zeigte sich sensibel gegenüber den beschichteten und unbeschichteten Partikeln. Die Beschichtung, welche die größte Auswirkung auf die Zellzahl- und Vitalitätsminderung der Zellen hatte, war eindeutig die PDA-Beschichtung.