004 Datenverarbeitung; Informatik
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Deep learning enables enormous progress in many computer vision-related tasks. Artificial Intel- ligence (AI) steadily yields new state-of-the-art results in the field of detection and classification. Thereby AI performance equals or exceeds human performance. Those achievements impacted many domains, including medical applications.
One particular field of medical applications is gastroenterology. In gastroenterology, machine learning algorithms are used to assist examiners during interventions. One of the most critical concerns for gastroenterologists is the development of Colorectal Cancer (CRC), which is one of the leading causes of cancer-related deaths worldwide. Detecting polyps in screening colonoscopies is the essential procedure to prevent CRC. Thereby, the gastroenterologist uses an endoscope to screen the whole colon to find polyps during a colonoscopy. Polyps are mucosal growths that can vary in severity.
This thesis supports gastroenterologists in their examinations with automated detection and clas- sification systems for polyps. The main contribution is a real-time polyp detection system. This system is ready to be installed in any gastroenterology practice worldwide using open-source soft- ware. The system achieves state-of-the-art detection results and is currently evaluated in a clinical trial in four different centers in Germany.
The thesis presents two additional key contributions: One is a polyp detection system with ex- tended vision tested in an animal trial. Polyps often hide behind folds or in uninvestigated areas. Therefore, the polyp detection system with extended vision uses an endoscope assisted by two additional cameras to see behind those folds. If a polyp is detected, the endoscopist receives a vi- sual signal. While the detection system handles the additional two camera inputs, the endoscopist focuses on the main camera as usual.
The second one are two polyp classification models, one for the classification based on shape (Paris) and the other on surface and texture (NBI International Colorectal Endoscopic (NICE) classification). Both classifications help the endoscopist with the treatment of and the decisions about the detected polyp.
The key algorithms of the thesis achieve state-of-the-art performance. Outstandingly, the polyp detection system tested on a highly demanding video data set shows an F1 score of 90.25 % while working in real-time. The results exceed all real-time systems in the literature. Furthermore, the first preliminary results of the clinical trial of the polyp detection system suggest a high Adenoma Detection Rate (ADR). In the preliminary study, all polyps were detected by the polyp detection system, and the system achieved a high usability score of 96.3 (max 100). The Paris classification model achieved an F1 score of 89.35 % which is state-of-the-art. The NICE classification model achieved an F1 score of 81.13 %.
Furthermore, a large data set for polyp detection and classification was created during this thesis. Therefore a fast and robust annotation system called Fast Colonoscopy Annotation Tool (FastCAT) was developed. The system simplifies the annotation process for gastroenterologists. Thereby the
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gastroenterologists only annotate key parts of the endoscopic video. Afterward, those video parts are pre-labeled by a polyp detection AI to speed up the process. After the AI has pre-labeled the frames, non-experts correct and finish the annotation. This annotation process is fast and ensures high quality. FastCAT reduces the overall workload of the gastroenterologist on average by a factor of 20 compared to an open-source state-of-art annotation tool.
The ubiquity of mobile devices fosters the combined use of ecological momentary assessments (EMA) and mobile crowdsensing (MCS) in the field of healthcare. This combination not only allows researchers to collect ecologically valid data, but also to use smartphone sensors to capture the context in which these data are collected. The TrackYourTinnitus (TYT) platform uses EMA to track users' individual subjective tinnitus perception and MCS to capture an objective environmental sound level while the EMA questionnaire is filled in. However, the sound level data cannot be used directly among the different smartphones used by TYT users, since uncalibrated raw values are stored. This work describes an approach towards making these values comparable. In the described setting, the evaluation of sensor measurements from different smartphone users becomes increasingly prevalent. Therefore, the shown approach can be also considered as a more general solution as it not only shows how it helped to interpret TYT sound level data, but may also stimulate other researchers, especially those who need to interpret sensor data in a similar setting. Altogether, the approach will show that measuring sound levels with mobile devices is possible in healthcare scenarios, but there are many challenges to ensuring that the measured values are interpretable.
Smart sensors and smartphones are becoming increasingly prevalent. Both can be used to gather environmental data (e.g., noise). Importantly, these devices can be connected to each other as well as to the Internet to collect large amounts of sensor data, which leads to many new opportunities. In particular, mobile crowdsensing techniques can be used to capture phenomena of common interest. Especially valuable insights can be gained if the collected data are additionally related to the time and place of the measurements. However, many technical solutions still use monolithic backends that are not capable of processing crowdsensing data in a flexible, efficient, and scalable manner. In this work, an architectural design was conceived with the goal to manage geospatial data in challenging crowdsensing healthcare scenarios. It will be shown how the proposed approach can be used to provide users with an interactive map of environmental noise, allowing tinnitus patients and other health-conscious people to avoid locations with harmful sound levels. Technically, the shown approach combines cloud-native applications with Big Data and stream processing concepts. In general, the presented architectural design shall serve as a foundation to implement practical and scalable crowdsensing platforms for various healthcare scenarios beyond the addressed use case.
This technical report introduces the Descartes Modeling Language (DML), a new architecture-level modeling language for modeling Quality-of-Service (QoS) and resource management related aspects of modern dynamic IT systems, infrastructures and services. DML is designed to serve as a basis for self-aware resource management during operation ensuring that system QoS requirements are continuously satisfied while infrastructure resources are utilized as efficiently as possible.
Complexity and Partitions
(2001)
Computational complexity theory usually investigates the complexity of sets, i.e., the complexity of partitions into two parts. But often it is more appropriate to represent natural problems by partitions into more than two parts. A particularly interesting class of such problems consists of classification problems for relations. For instance, a binary relation R typically defines a partitioning of the set of all pairs (x,y) into four parts, classifiable according to the cases where R(x,y) and R(y,x) hold, only R(x,y) or only R(y,x) holds or even neither R(x,y) nor R(y,x) is true. By means of concrete classification problems such as Graph Embedding or Entailment (for propositional logic), this thesis systematically develops tools, in shape of the boolean hierarchy of NP-partitions and its refinements, for the qualitative analysis of the complexity of partitions generated by NP-relations. The Boolean hierarchy of NP-partitions is introduced as a generalization of the well-known and well-studied Boolean hierarchy (of sets) over NP. Whereas the latter hierarchy has a very simple structure, the situation is much more complicated for the case of partitions into at least three parts. To get an idea of this hierarchy, alternative descriptions of the partition classes are given in terms of finite, labeled lattices. Based on these characterizations the Embedding Conjecture is established providing the complete information on the structure of the hierarchy. This conjecture is supported by several results. A natural extension of the Boolean hierarchy of NP-partitions emerges from the lattice-characterization of its classes by considering partition classes generated by finite, labeled posets. It turns out that all significant ideas translate from the case of lattices. The induced refined Boolean hierarchy of NP-partitions enables us more accuratly capturing the complexity of certain relations (such as Graph Embedding) and a description of projectively closed partition classes.
Proximity dimensions and the emergence of collaboration: a HypTrails study on German AI research
(2021)
Creation and exchange of knowledge depends on collaboration. Recent work has suggested that the emergence of collaboration frequently relies on geographic proximity. However, being co-located tends to be associated with other dimensions of proximity, such as social ties or a shared organizational environment. To account for such factors, multiple dimensions of proximity have been proposed, including cognitive, institutional, organizational, social and geographical proximity. Since they strongly interrelate, disentangling these dimensions and their respective impact on collaboration is challenging. To address this issue, we propose various methods for measuring different dimensions of proximity. We then present an approach to compare and rank them with respect to the extent to which they indicate co-publications and co-inventions. We adapt the HypTrails approach, which was originally developed to explain human navigation, to co-author and co-inventor graphs. We evaluate this approach on a subset of the German research community, specifically academic authors and inventors active in research on artificial intelligence (AI). We find that social proximity and cognitive proximity are more important for the emergence of collaboration than geographic proximity.
Aktivitätsbasierte Verhaltensmodellierung und ihre Unterstützung bei Multiagentensimulationen
(2000)
Durch Zusammenführung traditioneller Methoden zur individuenbasierten Simulation und dem Konzept der Multiagentensysteme steht mit der Multiagentensimulation eine Methodik zur Verfügung, die es ermöglicht, sowohl technisch als auch konzeptionell eine neue Ebene an Detaillierung bei Modellbildung und Simulation zu erreichen. Ein Modell beruht dabei auf dem Konzept einer Gesellschaft: Es besteht aus einer Menge interagierender, aber in ihren Entscheidungen autonomen Einheiten, den Agenten. Diese ändern durch ihre Aktionen ihre Umwelt und reagieren ebenso auf die für sie wahrnehmbaren Änderungen in der Umwelt. Durch die Simulation jedes Agenten zusammen mit der Umwelt, in der er "lebt", wird die Dynamik im Gesamtsystem beobachtbar. In der vorliegenden Dissertation wurde ein Repräsentationsschema für Multiagentensimulationen entwickelt werden, das es Fachexperten, wie zum Beispiel Biologen, ermöglicht, selbständig ohne traditionelles Programmieren Multiagentenmodelle zu implementieren und mit diesen Experimente durchzuführen. Dieses deklarative Schema beruht auf zwei Basiskonzepten: Der Körper eines Agenten besteht aus Zustandsvariablen. Das Verhalten des Agenten kann mit Regeln beschrieben werden. Ausgehend davon werden verschiedene Strukturierungsansätze behandelt. Das wichtigste Konzept ist das der "Aktivität", einer Art "Verhaltenszustand": Während der Agent in einer Aktivität A verweilt, führt er die zugehörigen Aktionen aus und dies solange, bis eine Regel feuert, die diese Aktivität beendet und eine neue Aktivität auswählt. Durch Indizierung dieser Regeln bei den zugehörigen Aktivitäten und Einführung von abstrakten Aktivitäten entsteht ein Schema für eine vielfältig strukturierbare Verhaltensbeschreibung. Zu diesem Schema wurde ein Interpreter entwickelt, der ein derartig repräsentiertes Modell ausführt und so Simulationsexperimente mit dem Multiagentenmodell erlaubt. Auf dieser Basis wurde die Modellierungs- und Experimentierumgebung SeSAm ("Shell für Simulierte Agentensysteme") entwickelt. Sie verwendet vorhandene Konzepte aus dem visuellen Programmieren. Mit dieser Umgebung wurden Anwendungsmodelle aus verschiedenen Domänen realisiert: Neben abstrakten Spielbeispielen waren dies vor allem Fragestellungen zu sozialen Insekten, z.B. zum Verhalten von Ameisen, Bienen oder der Interaktion zwischen Bienenvölkern und Milbenpopulationen.
Die Realisierung einer koordinierten und effektiven Fortbewegung für einen mobilen Roboter in natürlichen, sich kontinuierlich verändernden Umgebungen unter sich ebenso bewegenden Hindernissen ist eine komplexe Aufgabe, die die Lösung einer Reihe von Unterproblemen voraussetzt. Die vorliegende Arbeit beschäftigt sich sowohl mit den Themen der Wahrnehmung und Fortbewegung in veränderlichen Umgebungen, als auch mit Methoden zur Analyse der Hindernisbewegungen in Zusammenhang mit der Roboterbewegung selbst. Die Wahrnehmung wird in erster Linie anhand von Laserscannern betrachtet, und ein entsprechendes Verfahren zur Hindernisdetektion und -verfolung wird vorgestellt. Dabei werden Verfahren der globalen Netzwerkoptimierung eingesetzt, um Korrespondenzen zwischen Objekten aus den Einzelbildern herzustellen, was sich positiv auf die Robustheit gegenüber Störungen durch sporadische kleine Objekte auswirkt. Die Navigation basiert auf einer Adaption des sog. "Velocity Obstacle" Ansatzes auf die vorhandene Fahrzeugkinematik, und eine kooperative Bewegungskoordination (Roboter begleitet Mensch) wird durch eine geeignete Auswahlregel für kollisionsfreie Geschwindigkeiten realisiert. Anschließend werden verschiedene Distanzmaße eingeführt, anhand derer sich etwa der Pfad des Roboters mit dem Pfad seiner Begleitperson vergleichen lässt. Weiter wird eine Klassifizierung von Situationen vorgenommen, in die der Roboter potentiell involviert sein kann, und nach einer Übersicht über existierende Ansätze zur automatischen Intentionserkennung wird ein praktikabler Ansatz zur Erkennung gezielter Behinderungen eines mobilen Roboters vorgestellt. Die Arbeit schließt mit einem neuen Ansatz der Bewegungsplanung in dynamischen Umgebungen, der auf rekursiven Modellen des Roboters von seinem Gegenüber basiert, d.h. der Roboter berechnet zunächst, wie er sich in der Situation des (intelligenten, beweglichen) Hindernisses fortbewegen würde, und bezieht dies in die Entscheidung über die eigene Fortbewegung mit ein. Je nach Rekursionstiefe entstehen hierdurch Verhaltensweisen unterschiedlichen Charakters für den Roboter.
A bipartite graph G=(U,V,E) is convex if the vertices in V can be linearly ordered such that for each vertex u∈U, the neighbors of u are consecutive in the ordering of V. An induced matching H of G is a matching for which no edge of E connects endpoints of two different edges of H. We show that in a convex bipartite graph with n vertices and m weighted edges, an induced matching of maximum total weight can be computed in O(n+m) time. An unweighted convex bipartite graph has a representation of size O(n) that records for each vertex u∈U the first and last neighbor in the ordering of V. Given such a compact representation, we compute an induced matching of maximum cardinality in O(n) time. In convex bipartite graphs, maximum-cardinality induced matchings are dual to minimum chain covers. A chain cover is a covering of the edge set by chain subgraphs, that is, subgraphs that do not contain induced matchings of more than one edge. Given a compact representation, we compute a representation of a minimum chain cover in O(n) time. If no compact representation is given, the cover can be computed in O(n+m) time. All of our algorithms achieve optimal linear running time for the respective problem and model, and they improve and generalize the previous results in several ways: The best algorithms for the unweighted problem versions had a running time of O(n\(^{2}\)) (Brandstädt et al. in Theor. Comput. Sci. 381(1–3):260–265, 2007. https://doi.org/10.1016/j.tcs.2007.04.006). The weighted case has not been considered before.
Today’s Internet architecture was not designed from scratch but was driven by new services that emerged during its development. Hence, it is often described as patchwork where additional patches are applied in case new services require modifications to the existing architecture. This process however is rather slow and hinders the development of innovative network services with certain architecture or network requirements. Currently discussed technologies like Software-Defined Networking (SDN) or Network Virtualization (NV) are seen as key enabling technologies to overcome this rigid best effort legacy of the Internet. Both technologies offer the possibility to create virtual networks that accommodate the specific needs of certain services. These logical networks are operated on top of a physical substrate and facilitate flexible network resource allocation as physical resources can be added and removed depending on the current network and load situation. In addition, the clear separation and isolation of networks foster the development of application-aware networks that fulfill the special requirements of emerging applications. A prominent use case that benefits from these extended capabilities of the network is denoted with service component mobility. Services hosted on Virtual Machines (VMs) follow their consuming mobile endpoints, so that access latency as well as consumed network resources are reduced. Especially for applications like video streaming, which consume a large fraction of the available resources, is this an important means to relieve the resource constraints and eventually provide better service quality. Service and endpoint mobility both allow an adaptation of the used paths between an offered service, i.e., video streaming and the consuming users in case the service quality drops due to network problems. To make evidence-based adaptations in case of quality drops, a scalable monitoring component is required that is able to monitor the service quality for video streaming applications with reliable accuracy. This monograph details challenges that arise when deploying a certain service, i.e., video streaming, in a future virtualized network architecture and discusses possible solutions. In particular, this work evaluates the performance of mechanisms enabling service mobility and presents an optimized architecture for service mobility. Concerning endpoint mobility, improvements are developed that reduce the latency between endpoints and consumed services and ensure connectivity regardless of the used mobile access network. In the last part, a network-based video quality monitoring solution is developed and its accuracy is evaluated.